Query 011916
Match_columns 475
No_of_seqs 925 out of 2889
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0305 Anaphase promoting com 100.0 9.4E-66 2E-70 503.6 41.4 418 39-460 37-469 (484)
2 KOG0271 Notchless-like WD40 re 100.0 5.4E-44 1.2E-48 328.1 27.2 297 167-470 114-458 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-42 6.1E-47 316.8 25.1 278 167-450 156-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-42 9.1E-47 319.6 23.8 284 160-450 167-458 (459)
5 KOG0286 G-protein beta subunit 100.0 4E-40 8.6E-45 293.4 33.1 275 169-450 56-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-39 2.4E-44 303.5 21.2 258 207-470 173-437 (459)
7 KOG0279 G protein beta subunit 100.0 1.7E-37 3.6E-42 275.2 30.6 273 171-452 18-313 (315)
8 KOG0315 G-protein beta subunit 100.0 4.2E-36 9.2E-41 262.1 29.6 273 181-462 13-298 (311)
9 KOG0273 Beta-transducin family 100.0 1.1E-35 2.5E-40 280.1 32.6 281 164-452 231-523 (524)
10 KOG0284 Polyadenylation factor 100.0 3.5E-37 7.6E-42 285.6 17.2 289 157-452 85-380 (464)
11 KOG0273 Beta-transducin family 100.0 3.5E-35 7.6E-40 276.8 29.1 304 150-466 165-496 (524)
12 KOG0295 WD40 repeat-containing 100.0 2.7E-35 5.9E-40 269.6 24.9 278 168-451 108-405 (406)
13 cd00200 WD40 WD40 domain, foun 100.0 3.7E-33 7.9E-38 264.8 37.9 276 168-450 9-289 (289)
14 KOG0284 Polyadenylation factor 100.0 2.3E-35 5.1E-40 273.5 17.0 256 209-471 96-358 (464)
15 KOG0265 U5 snRNP-specific prot 100.0 2.3E-33 4.9E-38 251.2 28.7 276 169-451 48-337 (338)
16 KOG0291 WD40-repeat-containing 100.0 6.2E-33 1.4E-37 274.5 33.6 287 167-460 306-620 (893)
17 KOG0296 Angio-associated migra 100.0 5E-33 1.1E-37 254.9 30.5 275 171-452 67-398 (399)
18 KOG0281 Beta-TrCP (transducin 100.0 3.1E-35 6.8E-40 267.4 15.6 274 170-459 199-484 (499)
19 KOG0645 WD40 repeat protein [G 100.0 1.2E-32 2.6E-37 243.4 30.9 273 170-452 16-311 (312)
20 KOG0263 Transcription initiati 100.0 5.2E-34 1.1E-38 284.6 24.5 244 208-457 377-654 (707)
21 KOG0295 WD40 repeat-containing 100.0 1.6E-33 3.4E-38 258.0 21.8 259 207-470 106-383 (406)
22 KOG0285 Pleiotropic regulator 100.0 1.3E-32 2.9E-37 251.2 27.7 280 167-455 150-442 (460)
23 KOG0266 WD40 repeat-containing 100.0 1.9E-32 4.1E-37 278.9 32.2 278 168-452 159-454 (456)
24 KOG0263 Transcription initiati 100.0 4.4E-33 9.6E-38 278.0 26.1 266 169-440 379-703 (707)
25 KOG0318 WD40 repeat stress pro 100.0 2.9E-31 6.4E-36 253.3 36.1 285 167-457 189-565 (603)
26 KOG0291 WD40-repeat-containing 100.0 1.3E-31 2.9E-36 265.1 33.9 280 170-455 191-511 (893)
27 KOG0285 Pleiotropic regulator 100.0 1E-32 2.3E-37 251.9 23.3 246 207-460 149-397 (460)
28 KOG0286 G-protein beta subunit 100.0 3.5E-31 7.6E-36 236.3 31.0 257 207-468 53-320 (343)
29 KOG0279 G protein beta subunit 100.0 2.5E-31 5.4E-36 236.0 29.8 245 207-459 13-269 (315)
30 KOG0315 G-protein beta subunit 100.0 2.7E-31 5.9E-36 232.1 27.7 258 167-431 39-309 (311)
31 KOG0266 WD40 repeat-containing 100.0 3E-31 6.6E-36 270.0 32.3 252 207-463 157-420 (456)
32 PLN00181 protein SPA1-RELATED; 100.0 2.4E-30 5.2E-35 281.9 40.6 277 167-451 482-792 (793)
33 KOG0319 WD40-repeat-containing 100.0 1.7E-31 3.7E-36 264.1 27.7 275 174-455 330-622 (775)
34 KOG0277 Peroxisomal targeting 100.0 9.3E-32 2E-36 235.6 22.4 262 186-451 36-308 (311)
35 KOG0278 Serine/threonine kinas 100.0 2.6E-32 5.6E-37 238.5 18.8 279 170-457 16-302 (334)
36 KOG0282 mRNA splicing factor [ 100.0 1.8E-32 3.9E-37 259.5 18.9 274 169-450 215-503 (503)
37 KOG0276 Vesicle coat complex C 100.0 6.9E-31 1.5E-35 255.1 27.9 294 170-469 15-316 (794)
38 KOG0316 Conserved WD40 repeat- 100.0 4.2E-31 9.1E-36 229.1 22.8 249 207-464 15-269 (307)
39 KOG0319 WD40-repeat-containing 100.0 6.3E-31 1.4E-35 260.1 27.0 290 177-473 292-599 (775)
40 KOG0306 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 257.7 28.5 283 161-453 368-665 (888)
41 KOG0318 WD40 repeat stress pro 100.0 1.6E-29 3.5E-34 241.4 33.3 282 168-459 59-357 (603)
42 KOG0274 Cdc4 and related F-box 100.0 4.4E-30 9.4E-35 261.5 30.5 282 167-460 207-490 (537)
43 cd00200 WD40 WD40 domain, foun 100.0 2.6E-29 5.6E-34 238.3 33.5 248 207-460 7-257 (289)
44 KOG0293 WD40 repeat-containing 100.0 2E-30 4.4E-35 240.9 24.7 302 140-454 200-515 (519)
45 KOG0316 Conserved WD40 repeat- 100.0 7.6E-30 1.7E-34 221.3 26.4 272 169-451 18-298 (307)
46 KOG0281 Beta-TrCP (transducin 100.0 4.4E-32 9.5E-37 246.9 13.1 235 208-458 196-434 (499)
47 KOG0292 Vesicle coat complex C 100.0 7.4E-30 1.6E-34 256.3 27.7 279 170-456 11-325 (1202)
48 KOG0276 Vesicle coat complex C 100.0 4.3E-30 9.4E-35 249.6 24.5 259 207-470 11-276 (794)
49 PTZ00421 coronin; Provisional 100.0 3.2E-28 7E-33 247.4 37.3 281 168-453 22-332 (493)
50 KOG0283 WD40 repeat-containing 100.0 9.2E-30 2E-34 256.4 23.8 242 207-456 265-580 (712)
51 KOG0313 Microtubule binding pr 100.0 1E-28 2.2E-33 227.7 27.8 279 166-453 103-419 (423)
52 KOG0275 Conserved WD40 repeat- 100.0 2.4E-30 5.2E-35 233.7 16.0 281 164-450 209-507 (508)
53 KOG0310 Conserved WD40 repeat- 100.0 8.2E-29 1.8E-33 235.1 26.8 279 169-457 27-314 (487)
54 PLN00181 protein SPA1-RELATED; 100.0 4.3E-28 9.3E-33 264.3 36.2 260 187-454 457-740 (793)
55 KOG0277 Peroxisomal targeting 100.0 1.3E-29 2.9E-34 222.1 18.1 282 112-409 1-308 (311)
56 KOG0645 WD40 repeat protein [G 100.0 1.2E-27 2.7E-32 211.7 30.1 237 207-455 12-264 (312)
57 KOG0288 WD40 repeat protein Ti 100.0 2.5E-29 5.4E-34 233.9 17.6 287 150-450 161-459 (459)
58 KOG0265 U5 snRNP-specific prot 100.0 3.3E-28 7.2E-33 218.1 24.0 247 207-460 45-304 (338)
59 KOG0643 Translation initiation 100.0 1.8E-27 3.9E-32 210.2 27.6 281 169-454 11-319 (327)
60 KOG1407 WD40 repeat protein [F 100.0 4.2E-28 9.2E-33 213.5 22.6 255 207-469 18-278 (313)
61 KOG0294 WD40 repeat-containing 100.0 2.4E-27 5.3E-32 213.9 27.3 266 181-457 4-286 (362)
62 KOG0306 WD40-repeat-containing 100.0 2E-27 4.3E-32 235.5 29.2 273 169-452 66-484 (888)
63 KOG1446 Histone H3 (Lys4) meth 100.0 2.9E-26 6.3E-31 207.6 33.6 277 168-455 14-306 (311)
64 KOG0292 Vesicle coat complex C 100.0 3.3E-28 7.1E-33 244.5 23.0 249 208-462 8-290 (1202)
65 KOG0310 Conserved WD40 repeat- 100.0 2.2E-28 4.7E-33 232.3 20.6 255 208-469 25-285 (487)
66 KOG0282 mRNA splicing factor [ 100.0 5.2E-29 1.1E-33 236.1 15.5 249 207-462 212-472 (503)
67 KOG0313 Microtubule binding pr 100.0 2E-27 4.2E-32 219.2 24.9 240 207-455 103-379 (423)
68 KOG0289 mRNA splicing factor [ 100.0 2.7E-27 5.8E-32 221.6 26.2 275 171-451 222-505 (506)
69 KOG0296 Angio-associated migra 100.0 3.9E-27 8.5E-32 216.3 26.1 246 207-460 62-364 (399)
70 KOG0973 Histone transcription 100.0 5.2E-27 1.1E-31 242.1 28.1 289 167-456 12-359 (942)
71 PTZ00421 coronin; Provisional 100.0 4.8E-26 1E-30 231.5 34.0 243 212-457 23-295 (493)
72 KOG0275 Conserved WD40 repeat- 100.0 5.5E-28 1.2E-32 218.4 17.3 252 203-460 207-475 (508)
73 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-25 2.7E-30 203.5 31.3 247 208-462 13-272 (311)
74 KOG1408 WD40 repeat protein [F 100.0 3.5E-27 7.7E-32 232.2 22.8 269 180-453 394-714 (1080)
75 PTZ00420 coronin; Provisional 100.0 1.6E-25 3.5E-30 228.9 35.3 244 186-435 52-319 (568)
76 KOG1407 WD40 repeat protein [F 100.0 8.6E-26 1.9E-30 199.0 27.9 275 170-452 22-311 (313)
77 KOG0772 Uncharacterized conser 100.0 2.9E-26 6.2E-31 218.7 25.3 292 150-450 153-485 (641)
78 KOG1539 WD repeat protein [Gen 100.0 1.1E-25 2.3E-30 225.8 30.5 299 166-471 158-625 (910)
79 KOG0639 Transducin-like enhanc 100.0 3.6E-26 7.9E-31 217.2 24.6 280 164-451 415-703 (705)
80 KOG0293 WD40 repeat-containing 100.0 1.3E-26 2.9E-31 215.6 21.2 250 207-462 222-480 (519)
81 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-24 3.2E-29 209.4 36.3 281 181-471 4-298 (300)
82 KOG0264 Nucleosome remodeling 99.9 3.9E-26 8.4E-31 215.5 23.9 247 204-453 119-405 (422)
83 KOG0640 mRNA cleavage stimulat 99.9 2.3E-26 4.9E-31 207.0 21.2 281 167-452 111-426 (430)
84 PTZ00420 coronin; Provisional 99.9 7.4E-25 1.6E-29 224.0 34.5 224 227-455 50-296 (568)
85 KOG0641 WD40 repeat protein [G 99.9 4.2E-24 9.2E-29 184.5 32.4 281 165-452 29-349 (350)
86 KOG0274 Cdc4 and related F-box 99.9 8.8E-26 1.9E-30 230.0 26.0 248 208-470 207-461 (537)
87 KOG0973 Histone transcription 99.9 9.3E-26 2E-30 232.9 25.9 246 208-456 12-316 (942)
88 KOG0300 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 202.7 23.4 283 164-455 146-479 (481)
89 KOG0268 Sof1-like rRNA process 99.9 5.7E-27 1.2E-31 214.9 14.5 244 207-459 64-309 (433)
90 KOG0299 U3 snoRNP-associated p 99.9 3.6E-25 7.8E-30 209.0 26.6 280 167-455 141-459 (479)
91 KOG0647 mRNA export protein (c 99.9 4.6E-25 9.9E-30 198.2 25.1 262 170-441 29-312 (347)
92 KOG0268 Sof1-like rRNA process 99.9 3.7E-26 7.9E-31 209.6 17.6 276 171-460 69-353 (433)
93 KOG0305 Anaphase promoting com 99.9 2.5E-25 5.4E-30 219.1 24.1 238 168-412 217-463 (484)
94 KOG0646 WD40 repeat protein [G 99.9 3.5E-25 7.6E-30 209.4 23.7 268 188-461 18-316 (476)
95 KOG0288 WD40 repeat protein Ti 99.9 1.9E-26 4E-31 214.8 14.5 246 207-461 173-426 (459)
96 KOG0269 WD40 repeat-containing 99.9 5.3E-26 1.1E-30 226.4 18.1 282 171-456 42-344 (839)
97 KOG0301 Phospholipase A2-activ 99.9 1.1E-24 2.5E-29 214.6 26.4 271 171-456 17-292 (745)
98 KOG0647 mRNA export protein (c 99.9 9E-25 1.9E-29 196.3 23.3 243 207-459 25-288 (347)
99 KOG0278 Serine/threonine kinas 99.9 5.3E-26 1.2E-30 199.0 14.0 260 202-471 8-275 (334)
100 KOG0264 Nucleosome remodeling 99.9 1.2E-24 2.5E-29 205.6 22.2 243 165-410 121-404 (422)
101 KOG1036 Mitotic spindle checkp 99.9 3.9E-24 8.5E-29 192.9 24.4 254 207-471 11-282 (323)
102 KOG0308 Conserved WD40 repeat- 99.9 5E-25 1.1E-29 215.6 19.9 270 180-455 39-330 (735)
103 KOG0640 mRNA cleavage stimulat 99.9 9.2E-25 2E-29 196.7 19.4 248 207-459 110-390 (430)
104 KOG1274 WD40 repeat protein [G 99.9 6.2E-24 1.3E-28 215.5 27.3 241 207-453 11-263 (933)
105 KOG2106 Uncharacterized conser 99.9 1.5E-22 3.2E-27 193.1 34.4 270 170-449 202-518 (626)
106 KOG0308 Conserved WD40 repeat- 99.9 7E-25 1.5E-29 214.6 18.5 238 214-456 29-289 (735)
107 KOG0641 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 174.6 29.7 248 201-455 24-306 (350)
108 KOG1036 Mitotic spindle checkp 99.9 9.1E-23 2E-27 184.1 29.1 260 170-442 15-294 (323)
109 KOG0643 Translation initiation 99.9 4.2E-23 9.1E-28 182.6 25.6 230 207-444 8-253 (327)
110 KOG2096 WD40 repeat protein [G 99.9 3.9E-23 8.4E-28 186.9 24.9 240 207-455 84-405 (420)
111 KOG0321 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 205.0 23.8 275 179-458 64-397 (720)
112 KOG1274 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 209.0 27.9 266 171-449 16-297 (933)
113 KOG0299 U3 snoRNP-associated p 99.9 1.9E-23 4E-28 197.4 23.0 244 207-457 140-415 (479)
114 KOG0269 WD40 repeat-containing 99.9 3.4E-24 7.3E-29 213.6 16.0 238 171-411 90-341 (839)
115 KOG1332 Vesicle coat complex C 99.9 2.7E-23 5.9E-28 181.7 19.5 233 174-410 19-286 (299)
116 KOG0289 mRNA splicing factor [ 99.9 7.6E-23 1.6E-27 191.9 23.7 236 209-450 219-460 (506)
117 KOG0270 WD40 repeat-containing 99.9 8.1E-23 1.8E-27 192.4 23.9 275 179-457 137-454 (463)
118 KOG0301 Phospholipase A2-activ 99.9 3.3E-23 7.1E-28 204.4 22.2 248 207-471 12-267 (745)
119 KOG1332 Vesicle coat complex C 99.9 2.1E-23 4.5E-28 182.4 18.4 248 202-453 4-287 (299)
120 KOG4283 Transcription-coupled 99.9 3.6E-22 7.9E-27 178.9 26.1 276 169-452 44-365 (397)
121 KOG4378 Nuclear protein COP1 [ 99.9 5.7E-23 1.2E-27 195.4 20.9 259 171-434 37-305 (673)
122 KOG0639 Transducin-like enhanc 99.9 1.8E-23 3.8E-28 199.1 17.4 259 203-468 413-679 (705)
123 KOG1273 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 180.7 24.4 279 171-456 26-326 (405)
124 KOG0283 WD40 repeat-containing 99.9 5.7E-23 1.2E-27 207.5 21.6 211 242-459 257-539 (712)
125 KOG2445 Nuclear pore complex c 99.9 9.4E-22 2E-26 177.4 25.2 247 203-454 7-320 (361)
126 KOG0646 WD40 repeat protein [G 99.9 1.4E-22 3E-27 191.9 20.9 247 180-433 52-330 (476)
127 KOG2106 Uncharacterized conser 99.9 5.1E-21 1.1E-25 182.6 30.7 281 167-459 153-484 (626)
128 KOG4328 WD40 protein [Function 99.9 4.1E-22 8.9E-27 188.2 23.1 279 168-452 186-495 (498)
129 KOG0267 Microtubule severing p 99.9 6.7E-24 1.4E-28 210.0 11.2 231 207-443 26-259 (825)
130 KOG0772 Uncharacterized conser 99.9 2E-22 4.3E-27 192.7 20.8 239 169-410 215-487 (641)
131 KOG1408 WD40 repeat protein [F 99.9 7.7E-22 1.7E-26 194.8 25.3 287 171-463 327-682 (1080)
132 KOG0294 WD40 repeat-containing 99.9 7.9E-22 1.7E-26 178.4 22.7 225 224-457 4-242 (362)
133 KOG2055 WD40 repeat protein [G 99.9 1.3E-21 2.7E-26 185.1 24.3 280 167-452 212-512 (514)
134 KOG2048 WD40 repeat protein [G 99.9 9.7E-21 2.1E-25 186.7 30.7 273 171-453 28-320 (691)
135 KOG4378 Nuclear protein COP1 [ 99.9 7E-22 1.5E-26 188.0 21.8 287 179-473 3-303 (673)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-20 1E-24 177.9 34.5 252 172-432 34-300 (300)
137 KOG0267 Microtubule severing p 99.9 1.9E-23 4.1E-28 206.8 10.0 215 180-401 42-259 (825)
138 KOG4283 Transcription-coupled 99.9 2.7E-21 5.9E-26 173.3 22.8 201 207-413 41-279 (397)
139 KOG2048 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 185.3 29.5 241 209-456 25-279 (691)
140 KOG0300 WD40 repeat-containing 99.9 2.4E-21 5.1E-26 175.2 20.8 244 207-457 146-433 (481)
141 KOG1034 Transcriptional repres 99.9 8.1E-21 1.7E-25 172.7 22.9 265 180-452 56-383 (385)
142 KOG0302 Ribosome Assembly prot 99.9 6.4E-21 1.4E-25 176.2 22.0 227 178-408 163-436 (440)
143 KOG1539 WD repeat protein [Gen 99.9 1.5E-19 3.3E-24 182.0 33.5 282 170-459 116-530 (910)
144 KOG0270 WD40 repeat-containing 99.9 3.6E-21 7.7E-26 181.4 20.6 232 180-415 193-454 (463)
145 KOG0302 Ribosome Assembly prot 99.9 8.2E-21 1.8E-25 175.5 19.4 191 261-455 165-381 (440)
146 KOG0307 Vesicle coat complex C 99.9 1.3E-21 2.9E-26 203.3 14.6 244 165-413 61-330 (1049)
147 KOG0307 Vesicle coat complex C 99.9 1.8E-21 3.9E-26 202.3 15.6 248 207-455 62-330 (1049)
148 KOG1063 RNA polymerase II elon 99.9 2.4E-19 5.3E-24 177.2 28.0 275 172-452 18-391 (764)
149 KOG0650 WD40 repeat nucleolar 99.9 1.6E-19 3.5E-24 175.6 24.1 269 171-449 403-732 (733)
150 KOG1538 Uncharacterized conser 99.9 1.3E-19 2.9E-24 178.0 23.1 271 170-455 14-296 (1081)
151 KOG1587 Cytoplasmic dynein int 99.8 3.8E-19 8.2E-24 180.3 26.9 267 188-459 222-523 (555)
152 KOG1063 RNA polymerase II elon 99.8 2.9E-19 6.3E-24 176.6 25.2 290 162-454 261-650 (764)
153 KOG1273 WD40 repeat protein [G 99.8 1.4E-19 2.9E-24 163.9 20.6 241 212-461 26-289 (405)
154 KOG0650 WD40 repeat nucleolar 99.8 1.1E-19 2.3E-24 177.0 21.0 236 207-450 398-678 (733)
155 KOG1188 WD40 repeat protein [G 99.8 1E-19 2.2E-24 166.6 19.5 268 181-453 43-347 (376)
156 KOG0303 Actin-binding protein 99.8 4.3E-19 9.2E-24 165.1 22.9 245 165-413 24-297 (472)
157 KOG1445 Tumor-specific antigen 99.8 5.7E-19 1.2E-23 172.6 24.1 121 334-457 627-755 (1012)
158 KOG2055 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 169.5 20.7 245 209-459 213-474 (514)
159 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.6E-23 158.4 23.2 268 171-443 52-361 (406)
160 KOG1009 Chromatin assembly com 99.8 4.6E-19 1E-23 165.5 20.6 247 208-457 12-377 (434)
161 KOG4328 WD40 protein [Function 99.8 5E-19 1.1E-23 167.5 21.1 243 208-455 185-453 (498)
162 KOG0290 Conserved WD40 repeat- 99.8 3.8E-18 8.3E-23 153.0 25.3 276 167-448 43-361 (364)
163 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.3E-21 159.9 39.1 281 168-453 155-443 (466)
164 PRK11028 6-phosphogluconolacto 99.8 1.3E-17 2.8E-22 163.9 31.7 267 182-453 6-305 (330)
165 KOG0321 WD40 repeat-containing 99.8 3.3E-19 7.1E-24 174.8 19.8 244 213-461 53-356 (720)
166 COG2319 FOG: WD40 repeat [Gene 99.8 9.5E-17 2.1E-21 160.2 38.4 281 168-455 65-362 (466)
167 KOG2919 Guanine nucleotide-bin 99.8 2.7E-18 5.9E-23 156.0 23.6 241 210-455 50-331 (406)
168 KOG0303 Actin-binding protein 99.8 3.5E-18 7.6E-23 159.0 21.8 229 220-455 43-297 (472)
169 KOG0649 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 147.8 22.3 244 211-466 12-288 (325)
170 KOG2445 Nuclear pore complex c 99.8 2.2E-17 4.7E-22 149.4 24.2 234 171-410 16-318 (361)
171 KOG0642 Cell-cycle nuclear pro 99.8 8.7E-19 1.9E-23 169.9 16.1 248 207-459 292-568 (577)
172 KOG1524 WD40 repeat-containing 99.8 5.2E-18 1.1E-22 163.2 20.7 256 172-449 18-283 (737)
173 KOG0322 G-protein beta subunit 99.8 3E-18 6.5E-23 151.8 17.3 287 153-452 3-323 (323)
174 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.7E-22 148.7 22.3 265 187-456 39-365 (370)
175 KOG2096 WD40 repeat protein [G 99.8 4.8E-18 1E-22 154.1 18.7 204 245-454 80-310 (420)
176 KOG0290 Conserved WD40 repeat- 99.8 9.4E-18 2E-22 150.5 20.2 231 163-395 91-353 (364)
177 KOG2110 Uncharacterized conser 99.8 4.4E-16 9.5E-21 144.3 29.0 238 209-455 5-251 (391)
178 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.7E-22 148.7 18.1 195 170-367 125-361 (370)
179 KOG1034 Transcriptional repres 99.8 7.6E-17 1.6E-21 147.0 22.3 242 207-457 36-342 (385)
180 KOG1517 Guanine nucleotide bin 99.8 1.8E-16 3.9E-21 163.4 25.6 277 174-456 1070-1385(1387)
181 KOG1445 Tumor-specific antigen 99.8 4.7E-17 1E-21 159.4 19.4 222 185-411 600-845 (1012)
182 PRK01742 tolB translocation pr 99.8 1.6E-16 3.5E-21 161.4 24.2 231 188-433 184-426 (429)
183 KOG1587 Cytoplasmic dynein int 99.7 2.6E-16 5.7E-21 159.7 23.6 249 153-410 232-516 (555)
184 KOG1538 Uncharacterized conser 99.7 7.1E-17 1.5E-21 158.9 18.1 247 210-470 13-270 (1081)
185 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.6E-19 134.8 31.4 273 171-454 8-332 (391)
186 KOG4227 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 144.0 22.8 281 167-453 55-388 (609)
187 KOG1188 WD40 repeat protein [G 99.7 3.3E-16 7.1E-21 143.7 20.0 227 222-452 41-297 (376)
188 KOG1009 Chromatin assembly com 99.7 3.4E-16 7.4E-21 146.5 18.6 240 171-414 16-376 (434)
189 KOG0644 Uncharacterized conser 99.7 3.4E-17 7.4E-22 164.9 12.3 283 165-459 189-475 (1113)
190 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 141.5 20.3 243 207-456 54-326 (609)
191 KOG1524 WD40 repeat-containing 99.7 2.5E-16 5.3E-21 151.9 15.7 205 179-407 76-283 (737)
192 KOG0649 WD40 repeat protein [G 99.7 3.8E-14 8.2E-19 124.6 27.2 262 174-450 16-314 (325)
193 KOG0771 Prolactin regulatory e 99.7 4.5E-15 9.7E-20 140.0 21.8 195 255-454 148-356 (398)
194 PRK03629 tolB translocation pr 99.7 3.4E-14 7.3E-19 144.2 30.0 236 189-432 180-427 (429)
195 PRK11028 6-phosphogluconolacto 99.7 7.7E-14 1.7E-18 137.1 30.9 233 173-410 39-304 (330)
196 KOG1310 WD40 repeat protein [G 99.7 6.2E-16 1.4E-20 149.5 15.3 207 207-417 48-310 (758)
197 KOG2111 Uncharacterized conser 99.7 8.8E-14 1.9E-18 126.9 28.0 237 211-456 7-260 (346)
198 KOG1963 WD40 repeat protein [G 99.7 3.1E-14 6.7E-19 145.3 27.8 275 173-454 165-540 (792)
199 KOG1963 WD40 repeat protein [G 99.7 3.1E-14 6.8E-19 145.2 27.8 280 174-459 22-382 (792)
200 KOG2139 WD40 repeat protein [G 99.7 5.5E-14 1.2E-18 130.1 26.4 278 167-452 97-431 (445)
201 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-13 3.4E-18 135.6 31.3 278 179-461 5-356 (369)
202 PRK05137 tolB translocation pr 99.7 9.2E-14 2E-18 141.6 30.5 236 188-432 182-432 (435)
203 KOG1523 Actin-related protein 99.7 8.5E-15 1.8E-19 133.4 20.1 229 209-443 10-269 (361)
204 KOG0644 Uncharacterized conser 99.7 1.5E-16 3.2E-21 160.4 9.0 238 207-460 188-434 (1113)
205 PRK02889 tolB translocation pr 99.7 4.3E-14 9.4E-19 143.4 27.0 239 188-433 176-425 (427)
206 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-15 5.6E-20 146.0 16.3 248 170-422 296-573 (577)
207 PRK01742 tolB translocation pr 99.7 1.8E-14 3.8E-19 146.5 23.2 209 230-452 183-401 (429)
208 PRK04922 tolB translocation pr 99.6 8.4E-14 1.8E-18 141.8 26.9 236 189-432 185-432 (433)
209 KOG1240 Protein kinase contain 99.6 6.6E-14 1.4E-18 146.9 26.2 293 156-450 1036-1431(1431)
210 KOG2111 Uncharacterized conser 99.6 1.6E-12 3.4E-17 118.8 31.4 273 174-454 11-324 (346)
211 KOG1310 WD40 repeat protein [G 99.6 4E-15 8.6E-20 144.0 15.5 212 243-457 42-308 (758)
212 KOG2139 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 130.7 20.9 239 209-454 98-385 (445)
213 PF08662 eIF2A: Eukaryotic tra 99.6 4.9E-14 1.1E-18 126.8 20.9 156 295-455 8-182 (194)
214 KOG1334 WD40 repeat protein [G 99.6 4.9E-15 1.1E-19 141.7 14.2 251 207-461 140-433 (559)
215 KOG1334 WD40 repeat protein [G 99.6 5.6E-15 1.2E-19 141.3 14.4 284 167-455 141-469 (559)
216 KOG1517 Guanine nucleotide bin 99.6 4.1E-14 8.9E-19 146.3 21.5 236 170-412 1111-1383(1387)
217 KOG2394 WD40 protein DMR-N9 [G 99.6 4.6E-14 1E-18 136.5 20.6 257 180-458 136-458 (636)
218 KOG1240 Protein kinase contain 99.6 1.6E-13 3.4E-18 144.1 24.6 259 193-457 1034-1339(1431)
219 PF10282 Lactonase: Lactonase, 99.6 9.2E-12 2E-16 122.9 36.0 264 188-454 13-324 (345)
220 PRK05137 tolB translocation pr 99.6 8.2E-13 1.8E-17 134.7 29.4 219 232-456 183-416 (435)
221 PRK04922 tolB translocation pr 99.6 7.2E-13 1.6E-17 134.9 26.9 218 231-456 184-415 (433)
222 PF08662 eIF2A: Eukaryotic tra 99.6 3.8E-13 8.1E-18 121.0 21.2 143 271-418 37-186 (194)
223 KOG1523 Actin-related protein 99.6 2E-13 4.4E-18 124.6 19.2 204 247-455 6-239 (361)
224 PRK03629 tolB translocation pr 99.6 4E-12 8.6E-17 129.1 31.0 220 232-459 180-413 (429)
225 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.6E-18 126.9 19.7 216 174-392 111-345 (412)
226 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.4E-19 138.5 10.9 229 211-451 131-361 (545)
227 KOG4497 Uncharacterized conser 99.6 3E-13 6.5E-18 123.7 19.2 277 174-459 14-398 (447)
228 KOG4497 Uncharacterized conser 99.6 3.1E-12 6.6E-17 117.2 25.5 278 171-457 51-436 (447)
229 KOG2315 Predicted translation 99.6 5E-12 1.1E-16 123.5 28.5 296 171-474 37-369 (566)
230 KOG3881 Uncharacterized conser 99.6 4.1E-13 9E-18 125.6 19.9 245 208-458 54-326 (412)
231 PF02239 Cytochrom_D1: Cytochr 99.5 9.9E-12 2.1E-16 122.8 30.0 243 174-419 42-356 (369)
232 TIGR02800 propeller_TolB tol-p 99.5 5.3E-12 1.1E-16 128.3 28.7 235 188-430 170-416 (417)
233 KOG1272 WD40-repeat-containing 99.5 2.5E-14 5.5E-19 136.1 10.0 260 172-444 133-401 (545)
234 KOG0771 Prolactin regulatory e 99.5 1.9E-13 4.1E-18 129.1 14.7 191 213-410 148-354 (398)
235 PRK00178 tolB translocation pr 99.5 1E-11 2.2E-16 126.6 28.9 236 189-432 180-427 (430)
236 PRK02889 tolB translocation pr 99.5 6.5E-12 1.4E-16 127.6 27.2 214 231-452 176-403 (427)
237 PRK04792 tolB translocation pr 99.5 1.5E-11 3.2E-16 125.4 29.3 233 189-432 199-446 (448)
238 KOG2321 WD40 repeat protein [G 99.5 4E-12 8.7E-17 124.2 23.0 240 206-453 48-344 (703)
239 KOG2315 Predicted translation 99.5 3.7E-12 8E-17 124.4 22.6 262 188-459 105-397 (566)
240 KOG0280 Uncharacterized conser 99.5 4.6E-12 1E-16 114.5 21.6 266 187-455 45-336 (339)
241 PRK01029 tolB translocation pr 99.5 2.5E-11 5.5E-16 122.8 28.6 243 188-434 165-426 (428)
242 KOG1354 Serine/threonine prote 99.5 3.2E-12 6.8E-17 117.8 19.1 245 208-458 24-365 (433)
243 KOG2394 WD40 protein DMR-N9 [G 99.5 6.6E-13 1.4E-17 128.7 15.0 164 180-344 187-384 (636)
244 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.4E-10 1.6E-14 107.4 35.6 261 188-460 27-338 (352)
245 TIGR02800 propeller_TolB tol-p 99.5 7.1E-11 1.5E-15 120.0 29.1 217 232-454 171-399 (417)
246 PRK00178 tolB translocation pr 99.5 1.3E-10 2.8E-15 118.6 30.1 218 232-456 180-410 (430)
247 KOG0322 G-protein beta subunit 99.4 1E-12 2.2E-17 117.0 11.8 156 208-366 149-322 (323)
248 PRK01029 tolB translocation pr 99.4 7.2E-11 1.6E-15 119.6 26.9 214 174-390 190-426 (428)
249 COG4946 Uncharacterized protei 99.4 2.3E-10 4.9E-15 109.8 27.7 210 179-394 278-504 (668)
250 COG5354 Uncharacterized protei 99.4 9.7E-11 2.1E-15 113.3 25.2 280 167-456 31-352 (561)
251 KOG1409 Uncharacterized conser 99.4 5.4E-11 1.2E-15 109.8 21.8 224 178-410 36-270 (404)
252 PRK04792 tolB translocation pr 99.4 4.8E-10 1E-14 114.4 30.0 217 232-455 199-428 (448)
253 KOG0309 Conserved WD40 repeat- 99.4 4.9E-12 1.1E-16 126.7 14.5 282 170-454 26-341 (1081)
254 KOG4547 WD40 repeat-containing 99.4 1E-10 2.2E-15 115.2 23.3 184 180-368 7-221 (541)
255 COG2706 3-carboxymuconate cycl 99.4 4E-09 8.6E-14 98.8 32.2 265 187-455 15-324 (346)
256 KOG2321 WD40 repeat protein [G 99.4 8.1E-11 1.8E-15 115.2 21.1 184 222-412 147-345 (703)
257 KOG0974 WD-repeat protein WDR6 99.3 5.2E-11 1.1E-15 124.0 19.4 264 180-455 18-291 (967)
258 KOG2041 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 115.3 21.9 282 164-454 10-339 (1189)
259 TIGR02658 TTQ_MADH_Hv methylam 99.3 3E-09 6.5E-14 103.2 29.9 231 186-419 75-339 (352)
260 KOG2314 Translation initiation 99.3 7.9E-10 1.7E-14 108.0 25.4 284 170-456 251-577 (698)
261 PF10282 Lactonase: Lactonase, 99.3 1.6E-08 3.6E-13 99.8 35.7 254 174-430 42-345 (345)
262 KOG4547 WD40 repeat-containing 99.3 9.4E-11 2E-15 115.4 19.3 213 219-459 3-227 (541)
263 KOG1912 WD40 repeat protein [G 99.3 3.3E-10 7.2E-15 114.5 21.8 280 171-457 18-369 (1062)
264 PF04762 IKI3: IKI3 family; I 99.3 4.7E-09 1E-13 114.8 31.7 276 170-455 77-459 (928)
265 TIGR03300 assembly_YfgL outer 99.3 4.9E-09 1.1E-13 105.0 28.6 264 178-460 65-346 (377)
266 KOG0974 WD-repeat protein WDR6 99.3 1.8E-10 3.9E-15 120.0 17.1 187 174-368 95-289 (967)
267 TIGR03300 assembly_YfgL outer 99.3 5.8E-09 1.3E-13 104.5 27.7 255 178-449 105-376 (377)
268 COG5354 Uncharacterized protei 99.2 1.2E-08 2.6E-13 99.1 27.9 262 187-457 107-400 (561)
269 KOG0280 Uncharacterized conser 99.2 6.7E-10 1.4E-14 100.7 17.6 224 181-409 88-332 (339)
270 KOG1064 RAVE (regulator of V-A 99.2 6.1E-11 1.3E-15 128.9 12.8 184 180-377 2222-2408(2439)
271 KOG2041 WD40 repeat protein [G 99.2 3.3E-10 7.1E-15 113.5 16.7 230 206-443 11-279 (1189)
272 KOG2314 Translation initiation 99.2 9.4E-09 2E-13 100.6 24.4 281 168-455 210-528 (698)
273 PLN02919 haloacid dehalogenase 99.2 4.5E-08 9.7E-13 109.2 31.9 236 213-456 571-892 (1057)
274 KOG1354 Serine/threonine prote 99.2 7.4E-09 1.6E-13 95.9 21.2 272 170-449 27-431 (433)
275 KOG1064 RAVE (regulator of V-A 99.1 2.9E-10 6.2E-15 123.9 12.4 197 251-462 2208-2408(2439)
276 PRK04043 tolB translocation pr 99.1 8.6E-08 1.9E-12 96.7 29.6 214 188-411 169-401 (419)
277 KOG4190 Uncharacterized conser 99.1 2E-10 4.3E-15 111.9 7.8 205 244-454 728-950 (1034)
278 PRK04043 tolB translocation pr 99.1 7E-08 1.5E-12 97.3 26.3 197 271-474 169-382 (419)
279 COG4946 Uncharacterized protei 99.1 1.1E-07 2.4E-12 91.7 25.4 173 174-352 327-506 (668)
280 KOG4532 WD40-like repeat conta 99.1 5.9E-08 1.3E-12 87.2 21.7 227 220-455 83-334 (344)
281 KOG1920 IkappaB kinase complex 99.1 8.8E-08 1.9E-12 102.0 26.4 275 169-452 69-365 (1265)
282 PF08450 SGL: SMP-30/Gluconola 99.1 7.5E-07 1.6E-11 83.6 30.5 215 214-440 4-243 (246)
283 PF13360 PQQ_2: PQQ-like domai 99.0 5.8E-07 1.2E-11 83.7 28.2 218 187-416 2-236 (238)
284 PF15492 Nbas_N: Neuroblastoma 99.0 5.7E-07 1.2E-11 82.2 26.3 231 178-422 8-271 (282)
285 COG2706 3-carboxymuconate cycl 99.0 7.4E-07 1.6E-11 83.8 27.2 223 230-455 15-277 (346)
286 PLN02919 haloacid dehalogenase 99.0 1.4E-06 3.1E-11 97.3 33.5 234 173-414 572-892 (1057)
287 KOG1912 WD40 repeat protein [G 99.0 1.4E-07 2.9E-12 96.0 22.0 236 210-453 16-305 (1062)
288 COG5170 CDC55 Serine/threonine 99.0 2.4E-08 5.2E-13 91.4 15.2 240 207-452 24-367 (460)
289 PF04762 IKI3: IKI3 family; I 99.0 9.8E-07 2.1E-11 96.9 30.7 238 211-454 211-521 (928)
290 KOG1832 HIV-1 Vpr-binding prot 98.9 7.3E-10 1.6E-14 113.4 5.6 211 207-438 1099-1317(1516)
291 PRK11138 outer membrane biogen 98.9 4.9E-07 1.1E-11 91.1 26.0 256 178-451 120-393 (394)
292 KOG4532 WD40-like repeat conta 98.9 1.8E-07 4E-12 84.1 19.3 212 180-395 86-319 (344)
293 PRK11138 outer membrane biogen 98.9 6.3E-07 1.4E-11 90.3 26.0 271 178-459 69-360 (394)
294 KOG3914 WD repeat protein WDR4 98.9 2.5E-08 5.4E-13 94.4 14.4 162 295-459 65-230 (390)
295 KOG3914 WD repeat protein WDR4 98.9 2.6E-08 5.6E-13 94.3 13.5 157 213-376 66-232 (390)
296 PF13360 PQQ_2: PQQ-like domai 98.9 9.2E-07 2E-11 82.3 23.3 215 230-456 2-234 (238)
297 KOG1409 Uncharacterized conser 98.9 1.3E-07 2.8E-12 87.9 16.7 242 207-456 22-274 (404)
298 KOG1645 RING-finger-containing 98.8 2.1E-07 4.6E-12 88.1 16.8 255 190-453 175-462 (463)
299 PF15492 Nbas_N: Neuroblastoma 98.8 1.6E-05 3.5E-10 72.8 27.8 230 215-459 3-266 (282)
300 PF08450 SGL: SMP-30/Gluconola 98.8 2.8E-05 6.1E-10 72.9 30.7 212 173-397 4-244 (246)
301 KOG1275 PAB-dependent poly(A) 98.8 1.7E-07 3.6E-12 97.0 15.6 181 220-408 146-340 (1118)
302 KOG4714 Nucleoporin [Nuclear s 98.8 1.7E-07 3.6E-12 84.0 13.5 231 212-450 39-316 (319)
303 KOG0309 Conserved WD40 repeat- 98.8 4.4E-08 9.6E-13 98.9 10.5 196 170-368 69-340 (1081)
304 KOG1275 PAB-dependent poly(A) 98.7 2.4E-07 5.3E-12 95.9 15.4 182 176-365 145-340 (1118)
305 KOG4190 Uncharacterized conser 98.7 3.7E-08 8E-13 96.4 8.7 170 284-458 727-912 (1034)
306 PF07433 DUF1513: Protein of u 98.7 4.7E-05 1E-09 71.8 29.0 228 211-445 6-278 (305)
307 KOG2695 WD40 repeat protein [G 98.7 3.6E-08 7.9E-13 91.5 8.0 154 175-332 218-386 (425)
308 KOG2695 WD40 repeat protein [G 98.7 6.5E-08 1.4E-12 89.8 9.6 157 216-379 218-388 (425)
309 PF07433 DUF1513: Protein of u 98.7 4.7E-05 1E-09 71.8 28.7 211 174-390 10-269 (305)
310 KOG4714 Nucleoporin [Nuclear s 98.7 2.8E-07 6.1E-12 82.6 12.3 144 179-323 102-255 (319)
311 cd00216 PQQ_DH Dehydrogenases 98.7 1.7E-05 3.7E-10 82.0 27.4 273 179-461 62-433 (488)
312 COG5170 CDC55 Serine/threonine 98.7 3.9E-07 8.4E-12 83.6 13.2 201 250-456 25-313 (460)
313 KOG2114 Vacuolar assembly/sort 98.7 9.7E-06 2.1E-10 84.0 24.0 214 216-439 30-270 (933)
314 KOG0882 Cyclophilin-related pe 98.6 1.1E-06 2.4E-11 84.4 14.9 235 178-418 20-313 (558)
315 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.6E-12 61.2 5.7 39 412-450 1-39 (39)
316 PF00930 DPPIV_N: Dipeptidyl p 98.6 8.1E-05 1.8E-09 73.8 27.7 252 186-440 21-345 (353)
317 PF06433 Me-amine-dh_H: Methyl 98.6 0.00013 2.8E-09 69.6 27.1 232 188-420 67-330 (342)
318 PRK02888 nitrous-oxide reducta 98.5 2.6E-05 5.6E-10 80.1 23.1 275 157-453 54-405 (635)
319 PRK02888 nitrous-oxide reducta 98.5 5.4E-05 1.2E-09 77.8 24.2 183 217-411 200-405 (635)
320 PF06433 Me-amine-dh_H: Methyl 98.5 9.5E-05 2.1E-09 70.6 24.2 262 188-461 17-329 (342)
321 COG0823 TolB Periplasmic compo 98.5 2.6E-05 5.6E-10 78.5 21.5 207 188-399 173-390 (425)
322 KOG3621 WD40 repeat-containing 98.5 2E-05 4.4E-10 80.1 20.4 274 168-456 35-357 (726)
323 PF00400 WD40: WD domain, G-be 98.4 6.2E-07 1.3E-11 57.8 5.9 38 283-320 2-39 (39)
324 KOG2066 Vacuolar assembly/sort 98.4 7.4E-06 1.6E-10 84.2 16.5 182 251-452 39-233 (846)
325 KOG1008 Uncharacterized conser 98.4 7E-08 1.5E-12 96.3 1.6 200 164-367 52-275 (783)
326 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0012 2.6E-08 59.9 27.1 104 180-287 25-130 (354)
327 PF06977 SdiA-regulated: SdiA- 98.4 0.00054 1.2E-08 63.6 25.9 194 207-407 19-247 (248)
328 PF11768 DUF3312: Protein of u 98.4 0.00081 1.7E-08 67.8 28.5 120 336-459 207-336 (545)
329 KOG0882 Cyclophilin-related pe 98.4 1.9E-06 4.1E-11 82.9 9.6 210 249-462 7-241 (558)
330 KOG2066 Vacuolar assembly/sort 98.4 4.8E-05 1E-09 78.5 20.1 180 209-410 39-233 (846)
331 PF14583 Pectate_lyase22: Olig 98.4 0.0011 2.4E-08 64.6 28.2 279 169-452 36-381 (386)
332 COG3391 Uncharacterized conser 98.3 0.0025 5.5E-08 63.8 31.8 263 190-459 13-290 (381)
333 cd00216 PQQ_DH Dehydrogenases 98.3 0.0012 2.7E-08 68.3 29.9 233 179-420 111-434 (488)
334 KOG3617 WD40 and TPR repeat-co 98.3 6E-05 1.3E-09 78.0 19.0 264 170-441 17-374 (1416)
335 KOG1920 IkappaB kinase complex 98.3 0.0002 4.4E-09 77.2 23.3 202 251-455 68-325 (1265)
336 KOG3617 WD40 and TPR repeat-co 98.3 6.8E-05 1.5E-09 77.6 18.8 109 211-322 17-131 (1416)
337 PF08596 Lgl_C: Lethal giant l 98.3 0.00017 3.7E-09 71.9 21.4 238 211-455 3-338 (395)
338 PF04053 Coatomer_WDAD: Coatom 98.2 0.00093 2E-08 67.6 25.6 218 209-453 32-263 (443)
339 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 90.2 4.8 197 241-458 1091-1297(1516)
340 PF04053 Coatomer_WDAD: Coatom 98.2 0.00073 1.6E-08 68.4 23.9 220 167-410 31-262 (443)
341 PF00780 CNH: CNH domain; Int 98.2 0.0034 7.4E-08 59.8 27.7 224 178-422 7-267 (275)
342 PF03178 CPSF_A: CPSF A subuni 98.2 0.001 2.3E-08 65.0 24.4 211 188-406 2-261 (321)
343 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0013 2.9E-08 65.1 23.9 228 170-398 44-347 (353)
344 PF02897 Peptidase_S9_N: Proly 98.1 0.01 2.2E-07 60.3 30.8 241 213-456 127-408 (414)
345 COG0823 TolB Periplasmic compo 98.1 0.0002 4.3E-09 72.1 17.7 179 272-455 174-361 (425)
346 KOG1645 RING-finger-containing 98.1 0.00065 1.4E-08 65.0 19.8 234 168-410 193-461 (463)
347 KOG1008 Uncharacterized conser 98.1 1.3E-06 2.9E-11 87.4 1.7 195 252-453 57-276 (783)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.019 4E-07 60.0 31.8 277 179-461 70-499 (527)
349 PF04841 Vps16_N: Vps16, N-ter 98.0 0.013 2.8E-07 59.2 29.7 195 189-393 62-274 (410)
350 KOG2114 Vacuolar assembly/sort 98.0 0.0011 2.3E-08 69.4 21.8 203 170-378 27-254 (933)
351 PF08553 VID27: VID27 cytoplas 98.0 0.00049 1.1E-08 73.4 19.4 140 222-366 494-646 (794)
352 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0062 1.3E-07 55.4 23.0 143 221-369 23-167 (354)
353 KOG3621 WD40 repeat-containing 97.9 0.0001 2.2E-09 75.1 12.3 131 254-387 38-179 (726)
354 PF11768 DUF3312: Protein of u 97.9 0.00016 3.4E-09 72.7 13.1 91 190-282 238-332 (545)
355 COG3391 Uncharacterized conser 97.9 0.026 5.7E-07 56.5 29.1 220 210-432 74-308 (381)
356 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0097 2.1E-07 60.1 25.9 193 232-435 62-272 (410)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.023 4.9E-07 59.3 29.1 241 177-421 119-501 (527)
358 PF08553 VID27: VID27 cytoplas 97.8 0.0019 4.1E-08 69.1 19.5 133 187-321 503-646 (794)
359 PF06977 SdiA-regulated: SdiA- 97.8 0.023 5E-07 52.9 23.8 196 246-449 16-247 (248)
360 PF00780 CNH: CNH domain; Int 97.7 0.021 4.7E-07 54.2 24.5 221 219-461 5-264 (275)
361 PF08596 Lgl_C: Lethal giant l 97.7 0.01 2.2E-07 59.3 22.4 183 209-395 86-323 (395)
362 COG3386 Gluconolactonase [Carb 97.7 0.022 4.7E-07 54.9 23.6 217 175-399 31-276 (307)
363 PF05096 Glu_cyclase_2: Glutam 97.7 0.028 6.1E-07 52.2 22.9 194 156-353 32-249 (264)
364 COG3386 Gluconolactonase [Carb 97.6 0.033 7.2E-07 53.6 23.7 218 214-442 29-275 (307)
365 PF02897 Peptidase_S9_N: Proly 97.6 0.073 1.6E-06 54.0 26.9 257 156-415 108-409 (414)
366 PF03178 CPSF_A: CPSF A subuni 97.6 0.0088 1.9E-07 58.4 19.1 132 188-322 62-202 (321)
367 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0074 1.6E-07 48.0 14.5 101 295-406 2-110 (111)
368 smart00320 WD40 WD40 repeats. 97.5 0.00032 7E-09 43.4 5.6 38 413-450 3-40 (40)
369 PRK13616 lipoprotein LpqB; Pro 97.5 0.0061 1.3E-07 64.1 17.4 151 293-452 350-525 (591)
370 PHA02713 hypothetical protein; 97.4 0.013 2.8E-07 61.7 19.6 224 189-422 273-545 (557)
371 KOG4640 Anaphase-promoting com 97.4 0.00074 1.6E-08 68.3 9.6 93 292-388 20-115 (665)
372 KOG4499 Ca2+-binding protein R 97.4 0.056 1.2E-06 48.7 19.5 204 221-432 27-263 (310)
373 KOG4640 Anaphase-promoting com 97.4 0.00091 2E-08 67.7 9.4 92 209-301 20-114 (665)
374 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.011 2.5E-07 47.0 13.7 99 212-317 2-109 (111)
375 PRK13616 lipoprotein LpqB; Pro 97.4 0.046 1E-06 57.6 22.3 203 230-447 328-563 (591)
376 KOG1897 Damage-specific DNA bi 97.3 0.049 1.1E-06 58.4 21.1 210 189-407 751-1001(1096)
377 KOG2395 Protein involved in va 97.3 0.0048 1E-07 61.4 12.9 142 220-367 344-500 (644)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.25 5.4E-06 49.5 25.3 84 333-419 306-407 (415)
379 KOG4441 Proteins containing BT 97.2 0.026 5.7E-07 59.4 19.1 216 188-412 301-548 (571)
380 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.3E-08 40.9 5.3 37 284-320 4-40 (40)
381 COG3204 Uncharacterized protei 97.1 0.21 4.6E-06 46.7 21.4 159 207-367 83-263 (316)
382 KOG2395 Protein involved in va 97.1 0.015 3.2E-07 58.1 14.5 132 187-322 355-500 (644)
383 KOG3630 Nuclear pore complex, 97.1 0.0062 1.3E-07 65.7 12.7 144 209-354 100-263 (1405)
384 PF07995 GSDH: Glucose / Sorbo 97.1 0.33 7.1E-06 47.6 27.6 230 211-447 3-330 (331)
385 COG3490 Uncharacterized protei 97.1 0.26 5.6E-06 45.8 22.7 234 212-450 70-346 (366)
386 KOG2079 Vacuolar assembly/sort 97.0 0.015 3.2E-07 62.6 14.7 97 181-279 102-203 (1206)
387 PHA02713 hypothetical protein; 97.0 0.035 7.6E-07 58.5 16.9 174 189-370 321-536 (557)
388 KOG4441 Proteins containing BT 97.0 0.06 1.3E-06 56.7 18.5 227 219-454 283-548 (571)
389 KOG2444 WD40 repeat protein [G 96.9 0.0013 2.8E-08 58.7 4.8 141 307-455 33-180 (238)
390 PF14870 PSII_BNR: Photosynthe 96.9 0.45 9.6E-06 45.7 27.1 227 168-407 61-301 (302)
391 PRK10115 protease 2; Provision 96.8 1.1 2.3E-05 48.6 32.4 249 156-413 111-397 (686)
392 PF14870 PSII_BNR: Photosynthe 96.7 0.6 1.3E-05 44.8 29.2 267 168-449 16-301 (302)
393 TIGR03074 PQQ_membr_DH membran 96.7 0.84 1.8E-05 49.7 25.2 195 221-418 194-485 (764)
394 PF05694 SBP56: 56kDa selenium 96.7 0.22 4.7E-06 49.4 18.4 197 262-458 88-348 (461)
395 COG5276 Uncharacterized conser 96.7 0.59 1.3E-05 43.8 27.5 267 174-452 92-369 (370)
396 PRK13684 Ycf48-like protein; P 96.6 0.8 1.7E-05 44.9 31.6 264 171-450 48-329 (334)
397 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0099 2.2E-07 39.6 6.0 34 209-243 11-44 (47)
398 PF10168 Nup88: Nuclear pore c 96.6 1.2 2.5E-05 48.2 24.7 96 209-325 84-182 (717)
399 KOG1897 Damage-specific DNA bi 96.5 1.6 3.5E-05 47.3 30.7 94 357-453 846-943 (1096)
400 KOG2079 Vacuolar assembly/sort 96.5 0.011 2.4E-07 63.5 8.8 111 251-366 89-202 (1206)
401 PF05096 Glu_cyclase_2: Glutam 96.4 0.78 1.7E-05 42.8 26.0 189 200-396 35-248 (264)
402 PRK10115 protease 2; Provision 96.4 1.8 3.9E-05 46.9 31.7 237 211-454 128-396 (686)
403 KOG2444 WD40 repeat protein [G 96.4 0.0073 1.6E-07 54.1 5.9 102 220-322 69-177 (238)
404 COG3490 Uncharacterized protei 96.3 0.98 2.1E-05 42.2 21.4 225 174-408 73-346 (366)
405 TIGR02604 Piru_Ver_Nterm putat 96.2 1.5 3.2E-05 43.7 25.4 140 210-352 14-200 (367)
406 PHA03098 kelch-like protein; P 96.1 0.27 5.8E-06 51.7 16.9 189 256-455 290-514 (534)
407 PF12234 Rav1p_C: RAVE protein 96.0 0.23 4.9E-06 52.2 15.5 108 295-409 32-155 (631)
408 PHA03098 kelch-like protein; P 96.0 0.26 5.6E-06 51.8 16.3 146 219-370 293-467 (534)
409 KOG3630 Nuclear pore complex, 96.0 0.096 2.1E-06 57.0 12.4 142 294-440 102-261 (1405)
410 PF14727 PHTB1_N: PTHB1 N-term 95.9 2.2 4.7E-05 43.0 30.9 268 179-458 38-366 (418)
411 PF12894 Apc4_WD40: Anaphase-p 95.9 0.028 6.1E-07 37.5 5.3 34 292-326 11-44 (47)
412 PF14583 Pectate_lyase22: Olig 95.8 2.2 4.7E-05 42.1 28.2 225 215-443 41-303 (386)
413 PF15390 DUF4613: Domain of un 95.8 0.54 1.2E-05 48.1 16.3 148 293-454 20-188 (671)
414 PF05694 SBP56: 56kDa selenium 95.7 2.6 5.6E-05 42.1 27.1 239 198-441 52-392 (461)
415 COG3292 Predicted periplasmic 95.7 2.1 4.6E-05 43.8 19.7 273 163-447 159-442 (671)
416 COG3823 Glutamine cyclotransfe 95.6 1.2 2.7E-05 39.6 15.9 181 170-353 47-247 (262)
417 PF15390 DUF4613: Domain of un 95.5 1 2.2E-05 46.2 16.9 167 210-386 20-210 (671)
418 TIGR03074 PQQ_membr_DH membran 95.4 5.3 0.00012 43.7 24.2 193 179-375 195-485 (764)
419 PF10647 Gmad1: Lipoprotein Lp 95.3 2.5 5.5E-05 39.6 22.2 151 211-366 25-196 (253)
420 COG3204 Uncharacterized protei 95.3 2.7 5.8E-05 39.6 20.3 180 171-351 88-300 (316)
421 PF10647 Gmad1: Lipoprotein Lp 95.3 0.54 1.2E-05 44.1 13.9 113 336-452 25-144 (253)
422 PHA02790 Kelch-like protein; P 95.2 1.2 2.7E-05 46.1 17.6 130 189-325 288-426 (480)
423 COG5167 VID27 Protein involved 95.2 0.29 6.3E-06 49.1 12.0 143 220-367 478-632 (776)
424 KOG4499 Ca2+-binding protein R 95.1 1.7 3.7E-05 39.4 15.4 135 210-345 109-264 (310)
425 KOG1916 Nuclear protein, conta 94.9 0.027 5.9E-07 59.6 4.2 153 187-372 152-328 (1283)
426 KOG2280 Vacuolar assembly/sort 94.9 1.9 4E-05 45.6 17.1 175 170-347 85-272 (829)
427 TIGR02604 Piru_Ver_Nterm putat 94.7 2 4.3E-05 42.8 16.8 143 293-443 14-204 (367)
428 KOG1983 Tomosyn and related SN 94.7 1.6 3.6E-05 49.0 17.5 231 207-456 33-268 (993)
429 PLN00033 photosystem II stabil 94.4 6.2 0.00014 39.6 32.1 145 295-449 241-396 (398)
430 PHA02790 Kelch-like protein; P 94.1 2.2 4.7E-05 44.2 16.1 182 259-453 270-471 (480)
431 KOG2247 WD40 repeat-containing 94.0 0.0067 1.5E-07 59.9 -2.4 147 294-447 36-183 (615)
432 PF08728 CRT10: CRT10; InterP 93.8 2.7 5.9E-05 44.9 16.0 152 169-321 39-245 (717)
433 KOG2377 Uncharacterized conser 93.8 1.4 3.1E-05 43.7 12.8 128 180-308 35-169 (657)
434 COG1520 FOG: WD40-like repeat 93.7 8.1 0.00018 38.4 25.7 195 178-378 68-279 (370)
435 KOG2280 Vacuolar assembly/sort 93.7 3.3 7.2E-05 43.8 15.9 181 231-419 64-255 (829)
436 PRK14131 N-acetylneuraminic ac 93.6 7.2 0.00016 38.9 18.5 38 404-443 314-353 (376)
437 smart00036 CNH Domain found in 93.6 7.3 0.00016 37.6 27.7 227 180-420 14-280 (302)
438 PF12657 TFIIIC_delta: Transcr 93.6 0.29 6.3E-06 43.0 7.4 70 170-239 6-121 (173)
439 TIGR03548 mutarot_permut cycli 93.5 7.8 0.00017 37.7 20.1 111 255-370 67-197 (323)
440 PRK13684 Ycf48-like protein; P 93.5 8.2 0.00018 37.9 27.2 228 168-408 89-329 (334)
441 KOG4460 Nuclear pore complex, 93.5 9.9 0.00021 38.7 20.6 99 210-330 104-206 (741)
442 TIGR03547 muta_rot_YjhT mutatr 93.5 8.4 0.00018 37.8 19.6 25 255-279 58-93 (346)
443 PF10168 Nup88: Nuclear pore c 93.4 2 4.3E-05 46.5 14.5 71 293-367 85-179 (717)
444 TIGR03118 PEPCTERM_chp_1 conse 93.3 7.6 0.00016 36.9 27.1 216 211-432 24-307 (336)
445 PF10395 Utp8: Utp8 family; I 93.3 9.8 0.00021 40.4 18.8 163 207-376 127-314 (670)
446 PF02333 Phytase: Phytase; In 93.2 9.6 0.00021 37.8 20.7 185 262-454 69-292 (381)
447 PF12234 Rav1p_C: RAVE protein 92.9 4.7 0.0001 42.7 16.1 110 211-322 31-156 (631)
448 KOG3616 Selective LIM binding 92.8 2.1 4.6E-05 45.1 12.9 86 364-456 323-409 (1636)
449 KOG4460 Nuclear pore complex, 92.7 3.6 7.8E-05 41.7 14.0 28 293-320 104-131 (741)
450 TIGR02276 beta_rpt_yvtn 40-res 92.2 0.76 1.6E-05 29.3 6.1 41 344-386 1-41 (42)
451 KOG1900 Nuclear pore complex, 92.0 2.6 5.7E-05 47.2 13.2 137 311-453 96-273 (1311)
452 COG5167 VID27 Protein involved 91.9 2.2 4.9E-05 43.0 11.4 130 187-322 489-632 (776)
453 PF14727 PHTB1_N: PTHB1 N-term 91.6 17 0.00036 36.8 25.4 142 220-366 36-203 (418)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 91.4 2.7 5.9E-05 42.2 11.7 87 288-376 303-407 (415)
455 PF10214 Rrn6: RNA polymerase 91.3 27 0.00058 38.6 25.1 155 207-368 77-277 (765)
456 PF07569 Hira: TUP1-like enhan 90.9 1.8 4E-05 39.5 9.4 70 256-326 17-99 (219)
457 KOG2247 WD40 repeat-containing 90.9 0.039 8.5E-07 54.8 -1.6 133 213-349 38-174 (615)
458 PLN02153 epithiospecifier prot 90.8 17 0.00038 35.6 19.2 91 188-280 50-168 (341)
459 KOG1896 mRNA cleavage and poly 90.8 19 0.00041 40.5 17.9 179 183-366 999-1212(1366)
460 PF12657 TFIIIC_delta: Transcr 90.6 2 4.4E-05 37.7 9.1 32 423-454 86-123 (173)
461 COG5276 Uncharacterized conser 90.4 16 0.00035 34.6 23.5 194 250-454 85-287 (370)
462 PF11635 Med16: Mediator compl 90.2 33 0.00072 37.8 23.7 68 378-447 259-345 (753)
463 PF10433 MMS1_N: Mono-function 90.0 27 0.00058 36.4 21.8 242 179-432 223-503 (504)
464 PF14761 HPS3_N: Hermansky-Pud 90.0 14 0.00031 33.3 16.2 141 305-452 29-214 (215)
465 PF10313 DUF2415: Uncharacteri 89.9 1.6 3.5E-05 28.3 5.6 32 335-368 1-34 (43)
466 PRK14131 N-acetylneuraminic ac 89.8 23 0.0005 35.3 22.3 84 187-270 49-149 (376)
467 PF10395 Utp8: Utp8 family; I 89.8 31 0.00067 36.8 24.0 239 172-419 31-314 (670)
468 PLN00033 photosystem II stabil 89.6 25 0.00054 35.4 26.3 108 290-407 278-396 (398)
469 PF08728 CRT10: CRT10; InterP 89.5 17 0.00037 39.0 16.1 99 349-451 116-245 (717)
470 TIGR03118 PEPCTERM_chp_1 conse 89.4 20 0.00044 34.2 21.3 201 254-459 25-286 (336)
471 COG4590 ABC-type uncharacteriz 89.4 4.5 9.7E-05 40.4 10.9 157 209-371 220-390 (733)
472 PF10433 MMS1_N: Mono-function 89.3 30 0.00065 36.1 22.2 228 218-457 219-481 (504)
473 KOG2377 Uncharacterized conser 89.3 15 0.00034 36.8 14.4 138 256-398 27-173 (657)
474 PF07569 Hira: TUP1-like enhan 89.3 2.9 6.2E-05 38.3 9.3 71 171-242 15-98 (219)
475 PF14761 HPS3_N: Hermansky-Pud 89.3 16 0.00035 32.9 16.1 103 262-369 29-165 (215)
476 PF10313 DUF2415: Uncharacteri 89.3 1.9 4.1E-05 28.0 5.6 31 210-240 1-34 (43)
477 PF11715 Nup160: Nucleoporin N 89.2 6.8 0.00015 41.3 13.4 71 260-330 157-256 (547)
478 COG5290 IkappaB kinase complex 88.8 24 0.00052 38.0 16.1 216 209-434 112-348 (1243)
479 TIGR03548 mutarot_permut cycli 88.8 12 0.00026 36.4 13.9 83 188-270 139-233 (323)
480 PF11725 AvrE: Pathogenicity f 88.7 23 0.0005 41.3 17.1 96 181-279 407-516 (1774)
481 PLN02153 epithiospecifier prot 88.3 27 0.00059 34.2 22.3 92 232-325 51-170 (341)
482 PF14781 BBS2_N: Ciliary BBSom 87.7 15 0.00032 30.5 13.5 114 299-418 5-133 (136)
483 PF12768 Rax2: Cortical protei 87.6 12 0.00025 35.7 12.3 116 271-388 16-146 (281)
484 PLN02193 nitrile-specifier pro 86.6 36 0.00077 35.2 16.5 92 188-280 244-352 (470)
485 PF03088 Str_synth: Strictosid 86.5 8.2 0.00018 29.6 8.8 41 356-396 34-74 (89)
486 COG1520 FOG: WD40-like repeat 86.0 38 0.00082 33.6 23.4 192 220-420 68-278 (370)
487 smart00036 CNH Domain found in 86.0 34 0.00074 33.0 23.1 228 220-461 12-279 (302)
488 PF07250 Glyoxal_oxid_N: Glyox 85.9 13 0.00028 34.5 11.4 145 191-338 49-213 (243)
489 PLN02193 nitrile-specifier pro 85.7 47 0.001 34.3 19.5 146 220-371 175-355 (470)
490 TIGR03547 muta_rot_YjhT mutatr 85.3 39 0.00085 33.1 24.0 82 188-270 29-128 (346)
491 KOG1983 Tomosyn and related SN 85.3 23 0.00051 40.1 15.1 73 332-414 196-268 (993)
492 COG3292 Predicted periplasmic 85.2 51 0.0011 34.3 17.5 285 159-456 196-495 (671)
493 KOG1916 Nuclear protein, conta 85.2 1.4 2.9E-05 47.5 5.0 48 295-343 183-233 (1283)
494 PF11715 Nup160: Nucleoporin N 85.1 8.7 0.00019 40.5 11.4 72 177-248 157-257 (547)
495 KOG1900 Nuclear pore complex, 84.5 14 0.0003 41.9 12.4 142 180-323 91-273 (1311)
496 PF14781 BBS2_N: Ciliary BBSom 84.4 22 0.00048 29.5 12.5 111 214-329 3-132 (136)
497 TIGR02276 beta_rpt_yvtn 40-res 84.1 5.9 0.00013 25.0 6.1 41 388-430 1-41 (42)
498 PF12768 Rax2: Cortical protei 83.9 25 0.00054 33.5 12.6 88 188-277 16-121 (281)
499 PF07676 PD40: WD40-like Beta 83.3 4.2 9.1E-05 25.4 5.1 33 330-364 4-38 (39)
500 PF10214 Rrn6: RNA polymerase 82.9 82 0.0018 34.8 28.1 111 293-411 146-277 (765)
No 1
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-66 Score=503.60 Aligned_cols=418 Identities=53% Similarity=0.901 Sum_probs=359.0
Q ss_pred CCCCCCCCCCCcccCCCCCc-Ccc-ccccccC----C-C---CCCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 011916 39 SPSSRSSTCSDRFIPCRSSS-RLH-TFELIEK----G-S---PVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSP 108 (475)
Q Consensus 39 ~~~~~~~~~~drfip~r~~~-~~~-~~~~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (475)
........++|||||.|... ++. .|..... . . .........+..++++|+|+... .-..+.....++.|
T Consensus 37 ~~~~~~~~~~~rf~P~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~-~~~~~~~~~~~~~~ 115 (484)
T KOG0305|consen 37 SKLSPSSKVGDRFIPSRLSSEEFNRNFKYIGSFSRPNKRSALDTGRESSSLAASLLRSELFKSNK-ITSEQSLRALPDEP 115 (484)
T ss_pred cccCcccccCCccCCcccchhhccccccccccccccccccccccccccchhhhhhhhhhhhccCc-cchhhhhhhccCCc
Confidence 33445778899999999985 553 3332111 1 0 11223455677899999998651 10111122345666
Q ss_pred C-cccccccCCCCCCC---CCCCCCCccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEE
Q 011916 109 S-KNMLRFKTDHSSGP---NSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAV 184 (475)
Q Consensus 109 ~-~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~ 184 (475)
. .+||.|+..+.... ..++...+..... ......+++..|+++..|+++||+|++.+|||.+.++|+..++||+
T Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laV 193 (484)
T KOG0305|consen 116 NRDRILTYKSKAPRPRSRTQEPDSVYPSAESS--IRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAV 193 (484)
T ss_pred cccceeEecccCCCCccccccccccccccccc--cccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEE
Confidence 5 89999998766421 1222222222211 1233447788899999999999999999999999999999999999
Q ss_pred EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCCCE
Q 011916 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNSRI 263 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~ 263 (475)
+.+..||+|+..++++..+++++ .+.|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|++..
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~ 272 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSV 272 (484)
T ss_pred EecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCce
Confidence 99999999999999999999876 89999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 264 LSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 264 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+.+|+.|+.|.++|++........+.+|.++||+++|++|+++||+|++|+.+.|||.....++..+..|.++|++++|+
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 99999999999999997776666789999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
|....|||+|||+.|++|++||+.+|+.+..+.++++|++|.|++..++|++++|+.++.|.||++++.+++..+.+|..
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|.+++++|||+.+++|+.|++++||++++.......
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~~ 469 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDERPKSTK 469 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCCCCcccc
Confidence 9999999999999999999999999999997555543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-44 Score=328.13 Aligned_cols=297 Identities=23% Similarity=0.415 Sum_probs=262.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.++.|+|+ .+++++.|.++++||+.+......+. +|...|.||+|+|||+.||+|+.||+|.+||.++++++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc
Confidence 3445788999996 57777779999999999999888887 99999999999999999999999999999999988765
Q ss_pred -EEecCCCCceEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 245 -RTFGGHQTRAGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 245 -~~~~~h~~~v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
+.+.+|...|++++|. .++|++++.||.|+|||+. .+.++..+.+|...|+|+.|--+| +|++|+.|++|
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI 270 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI 270 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence 6789999999999994 2689999999999999998 678899999999999999997665 99999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEEC-----------CCCCc------------------------EEEEecCCCCCeE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWS-----------PHQSS------------------------LLASGGGTADRCI 361 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~~------------------------ll~sg~Gs~d~~I 361 (475)
++|+...|.....+.+|...|+.|+.+ |.+.. -+++|+ .|.++
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 999999999999999999999999877 33332 366655 99999
Q ss_pred EEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 362 RFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 362 ~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
.+|+-... +++... .|..-|..+.|+||++++++ ++-|+.|++|+..+++.+.++.+|-+.|+.++|+.|.++|++
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS--aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS--ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEE--eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 99996543 355444 57788999999999999999 788999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 440 GAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
|+.|.+|++|++.+.....-+. +...|+.++
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 9999999999999998887766 666665443
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-42 Score=316.82 Aligned_cols=278 Identities=27% Similarity=0.507 Sum_probs=252.7
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~ 239 (475)
++-+|.|++|+|| .+++++.+|.|.+||..+++.....-.+|...|++++|.| ..++||+++.||.|+|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 5678999999998 4666667999999999999876655459999999999976 56799999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc-----------CCC---
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS-----------HDD--- 304 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-----------~~~--- 304 (475)
.+.++..+.+|+..|+|+.|.| .+|++|+.|++|++|+.. .+.+...+.+|...|+.|+.+ |.+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~-dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL-DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc-chhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 9999999999999999999975 899999999999999998 688899999999999999887 223
Q ss_pred ----------------------CEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 305 ----------------------RELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 305 ----------------------~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
..|++|+.|.++.+|+... .+++..+.+|..-|+.+.|+||+++ +++++ .|..|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaS--FDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-IASAS--FDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE-EEEee--cccce
Confidence 3499999999999999764 4588889999999999999999995 45544 89999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
++||-++|+.+..+. |-..|..++|+.|.+.|++ |+.|.++++|++++.+....+.+|.+.|.++.|+|||+.+++|
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecC
Confidence 999999999999997 7789999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEe
Q 011916 441 AGDETLRFWN 450 (475)
Q Consensus 441 s~Dg~I~iW~ 450 (475)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=319.57 Aligned_cols=284 Identities=21% Similarity=0.377 Sum_probs=257.6
Q ss_pred ccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Q 011916 160 LDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQV 235 (475)
Q Consensus 160 l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~i 235 (475)
|....+.++-.+..+.++.+ .+++++.+|.++||+..+...+..+. +|...|.++.|+|. +..||+|+.||++++
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceee
Confidence 34445567777888888876 57777779999999999998888876 99999999999996 679999999999999
Q ss_pred EECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 236 WDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
|++.+...+..+.+|..+|..++|+ |++|++++.|.+-++||++ .+..+....+|...|.+++|.+||.++++||.|
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccc-cchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 9999999999999999999999995 7999999999999999999 566677788999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcC-CCC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSK-NVN 391 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~-~~~ 391 (475)
..-+|||+++++++..+.+|..+|.+|+|+|+|. .+++|+ .|++++|||++...++..+. |.+-|..+.|+| .|.
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCce-EEeecC--CCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999999999999999998 555554 89999999999999888885 677899999999 455
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|++ ++-|+.++||...++.++..+.||++.|.++.+++|+++|+|++.|.++++|.
T Consensus 402 fL~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 5555 66899999999999999999999999999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-40 Score=293.40 Aligned_cols=275 Identities=23% Similarity=0.427 Sum_probs=253.7
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----- 241 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----- 241 (475)
-.|.+++|+++ .+++++.||.+.|||.-+...+..+.+ ....|..++|+|.|+++|+|+-|....||++.+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 34677999987 688888999999999998887777764 3678999999999999999999999999999854
Q ss_pred -eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 011916 242 -KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLV 318 (475)
Q Consensus 242 -~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~i 318 (475)
+..+++.+|.+.+.|+.| +...|++++.|.+..+||++ .++.+..+.+|.+.|.++.++| +++.+++|+-|+..++
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE-TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc-cceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 456778999999999999 77899999999999999999 7888899999999999999999 9999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~ 395 (475)
||++.+..++.|.+|+..|++|.|.|+|..+ ++ |+.|+++++||++..+.+..+.+. ..|++++|+..|++|++
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~af-at--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAF-AT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCee-ee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 9999999999999999999999999999854 44 459999999999999999888654 57999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
|+.|..+.+||.-.++.+..+.+|.++|.+|..+|||.-|+||+.|.+||||.
T Consensus 291 --gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 --GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=303.46 Aligned_cols=258 Identities=25% Similarity=0.421 Sum_probs=241.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+...+|..+.|+.|++.||+|+.+|.++||+..+...+.++.+|...|.++.|++ ..+++|+.||++++|++. ..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-CC
Confidence 5678999999999999999999999999999999999999999999999999964 489999999999999998 56
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
..+..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||. |+++|| .|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGG--lD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGG--LDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccC--ccchhh
Confidence 88899999999999999999999999999999999999999999988899999999999999999 888877 999999
Q ss_pred EEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEE
Q 011916 363 FWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTG 440 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~ 440 (475)
|||+++|.++..+. |..+|..+.|+|+|..|++ |+.|++++|||++....+.++.+|..-|..+.|+| .|.+|+|+
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 99999999999885 6688999999999999999 99999999999999999999999999999999998 78999999
Q ss_pred eCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+.|++++||.-.+..+.+.+. |++.|.|++
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEE
Confidence 999999999999999988865 555676654
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=275.15 Aligned_cols=273 Identities=26% Similarity=0.384 Sum_probs=237.1
Q ss_pred eeEEecC---CCCEEEEEcCCeEEEEECCC-----CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 171 LNLVDWS---SQNVLAVGLGTCVYLWTASN-----SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 171 v~~l~ws---~~~~la~~~~~~V~lw~~~~-----~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
|..++-. ++.++.++.|..+.+|++.. |...+.+. +|...|..+..++||++.++++.|+++++||+.+++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCc
Confidence 4444444 34577778899999998764 45566666 899999999999999999999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEcCC--CCEEEEEeCCCcE
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWSHD--DRELASGGNDNQL 316 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~~--~~~lasg~~Dg~I 316 (475)
..+.|.+|...|.+++++ ...+++|++|++|++|++.. .+..++.. |...|.|+.|+|+ ..+|++++.|++|
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 999999999999999995 58999999999999999973 33333333 3789999999997 6799999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++||+++.+....+.+|.+.++.++++|||. +.++|+ .||.+.+||++.++.+..+++...|.+++|+|+.-.|+++
T Consensus 175 KvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred EEEccCCcchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec
Confidence 9999999999999999999999999999999 777776 9999999999999999999999999999999998888774
Q ss_pred EecCCCeEEEEECCCCceEEEecC----C-----CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTG----H-----SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~----h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+ +..|+|||+.+...+.++.. . ......++|++||+.|++|-.|+.|++|.+.
T Consensus 252 t---~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 T---ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred c---CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3 44599999999888776652 1 3346788999999999999999999999975
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=262.08 Aligned_cols=273 Identities=22% Similarity=0.341 Sum_probs=236.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLA 258 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~ 258 (475)
++++|.|.+|++|.+.+|.....+. ..+..|..+...|+++.||+++. -.|++||+.+++ ++.++.+|...|+++.
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 5566779999999999999999986 45789999999999999999988 689999998764 5889999999999999
Q ss_pred e--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-cccc
Q 011916 259 W--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTA 335 (475)
Q Consensus 259 ~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~ 335 (475)
| +|+.+++|++||+++|||++. ...++...|..+|+++..+|+...|++|.++|.|+|||+....+...+. +...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9 689999999999999999994 4445566688999999999999999999999999999999876555443 3457
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee------eee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL------NSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~------~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
.|.++...|||+.+++.. ..|.+++|++-+.... ..+ .+.+.+..+.+||++++|++ +++|..++||+
T Consensus 169 ~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdktv~iwn 243 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDKTVKIWN 243 (311)
T ss_pred ceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCceEEEEe
Confidence 899999999999777743 7999999998775433 233 36678999999999999999 78999999999
Q ss_pred CCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 409 YPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 409 ~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
..+. +.-..+++|...+...+||.||+||+||+.|+++++|++..+++......
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 9988 66677889999999999999999999999999999999999987666543
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=280.06 Aligned_cols=281 Identities=22% Similarity=0.413 Sum_probs=252.1
Q ss_pred CCCCCCceeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
...+.-.|++++|+.+ .+||. ..+|.++||+........+- .|.++|.++.|+.+|+||++++-||++.+||..++
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 3445567999999975 45554 55999999998766544333 68999999999999999999999999999999999
Q ss_pred eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 242 KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
.....+..|......+.| +...+++++.|+.|+++.+. ...++.++.+|.++|.+|.|+|.|.+|++++.|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 999999999999889999 67899999999999999998 6778889999999999999999999999999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCC--------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCC
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQS--------SLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVN 391 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~ 391 (475)
.........+..|...|..+.|+|.|. ..+++++ .|++|++||+..+.++..+ +|..+|.+++|+|+|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCc
Confidence 999989999999999999999999764 2444444 7999999999999999999 7899999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++++ |+.||.|.+|+.++++.+..+.+ ++.|..|+|+.+|..|..+..||.+++-|+.
T Consensus 466 ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999 99999999999999999998875 4569999999999999999999999999874
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=285.56 Aligned_cols=289 Identities=22% Similarity=0.405 Sum_probs=247.8
Q ss_pred ceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 157 HKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 157 ~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
.+...+...+....|+.+.|.|+ .+++++..|.+.||+..+-....+.. .|+..|.++.|+++|.++++|..+|.|+
T Consensus 85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEE
Confidence 34444444455567899999997 68888999999999985443333333 8999999999999999999999999999
Q ss_pred EEECCCCeeeEEecCC-CCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 235 VWDGTQCKRVRTFGGH-QTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
+|+..- ..++.+..| ...|.+++|+ ...+++++.||+|+|||.. ..+....+.+|.-.|.+++|+|...++|+|+
T Consensus 164 yWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~-~~kee~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 164 YWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR-MPKEERVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred ecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc-CCchhheeccCCCCcceeccCCccceeEEcc
Confidence 999653 444555554 4899999995 5899999999999999998 5556667899999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNV 390 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~ 390 (475)
.|+.|++||.+++.++.++..|+..|.++.|+|++.+ +++++ .|..++++|+++.+.+..+. |...+.++.|+|-.
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~-Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW-LLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe-eEEcc--CCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 9999999999999999999999999999999999975 45544 99999999999888888876 78899999999988
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.-|+++ |+.||.|..|.+...+++..+. +|...|++|+|+|-|.+|++|+.|.++++|.-.
T Consensus 319 ~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 ESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 887776 7789999999998666666664 699999999999999999999999999999754
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-35 Score=276.76 Aligned_cols=304 Identities=20% Similarity=0.428 Sum_probs=256.0
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCC--cEEEEe-----------eCCCCCcEE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNS--KVTRLC-----------DLGPGDSVC 213 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~--~~~~~~-----------~~~~~~~V~ 213 (475)
..||..-.+++. +.-.|.+.+|+|- .+++++. +...++|++... ...... .......|+
T Consensus 165 ~~I~~~~~kvl~-----~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT 239 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-----HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVT 239 (524)
T ss_pred ccccccceeecc-----CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcc
Confidence 345555555554 3445788999994 4666655 778999998751 111111 112346899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+++|+.+|..||+|..||.++||+ .++.++.++..|.++|.++.|+ |++|++++.|+++.+||.. .+...+.+..|
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQFEFH 317 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEeeeec
Confidence 999999999999999999999999 5678889999999999999996 6899999999999999998 67777888889
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
..+-..+.|-. ...+++++.|+.|+|+.+....++.++.+|.+.|.+|.|+|.+. |+++++ .|++++||+.....+
T Consensus 318 s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~S--dD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 318 SAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCS--DDGTLKIWSMGQSNS 393 (524)
T ss_pred cCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEec--CCCeeEeeecCCCcc
Confidence 88878899964 45889999999999999999999999999999999999999999 666665 899999999988888
Q ss_pred eeeec-CCCCeeEEEEcCCCC---------eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 372 LNSVD-TGSQVCNLAWSKNVN---------ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 372 ~~~~~-~~~~v~~l~~s~~~~---------~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
...+. |...|..+.|+|.|. .+++ ...|+.|++||+..+.++..|..|+.+|++++|+|+|+++|+|+
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88775 666899999998763 3444 66899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCcccCCcc
Q 011916 442 GDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
.||.|.+|++..+...+.......+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred CCCeeEeccccchheeEeecCCCeE
Confidence 9999999999999988887776664
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=269.59 Aligned_cols=278 Identities=23% Similarity=0.384 Sum_probs=252.2
Q ss_pred CCceeEEecCCCC-EEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee
Q 011916 168 DFYLNLVDWSSQN-VLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKRV 244 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~~ 244 (475)
...|..+-+.|.. +++. +.+.+|++||..++++...+. +|.+.|..|+|+..|++||+++.|-.+++||.++ .+++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 3456667778874 3333 359999999999999977766 8999999999999999999999998899999987 6788
Q ss_pred EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+.+|...|.++.| .|++|+++++|.+|+.|++. .+.++.++.+|...|..+..+.||.++|+++.|.+|++|-+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 889999999999998 57999999999999999999 788899999999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCC--------------CcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEc
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQ--------------SSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWS 387 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~--------------~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s 387 (475)
++++...+++|+-+|.+++|.|.. ..++.+++ .|++|++||+.+|.++.++ .|...|+.++|+
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 999989999999999999997742 23666654 9999999999999999988 578899999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|.|++|++ ..+|+.+++||+.+.+++..+..|+.-|+++.|+.+-.+++||+-|.++++|..
T Consensus 344 p~Gkyi~S--caDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 344 PGGKYILS--CADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCeEEEE--EecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999 679999999999999999999999999999999999999999999999999974
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.7e-33 Score=264.78 Aligned_cols=276 Identities=30% Similarity=0.502 Sum_probs=245.1
Q ss_pred CCceeEEecCCC-CEE-EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVL-AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~l-a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+++ +++ +++.++.|++|+..+++...... .|...+..+.|++++++|++++.+|.|++|++.+++.+.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR 87 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE
Confidence 346889999996 444 44559999999999887666654 677889999999999999999999999999999988888
Q ss_pred EecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+..|...+.++.|++ .++++++.|+.|.+||++ .......+..|...|.++.|++++.++++++.|+.|++||++.
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 9999999999999964 788888889999999998 5666777788999999999999999999988899999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...+.+++|+|++..+++++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++ +..++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 241 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDG 241 (289)
T ss_pred cccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--EcCCC
Confidence 988888889999999999999998666654 5999999999999988888 67779999999999777776 66799
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|++||+.+++.+..+..|...|.+++|++++.+|++++.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999999999999999999999999996
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=273.47 Aligned_cols=256 Identities=23% Similarity=0.433 Sum_probs=227.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...|..|.|.|+|+.|++|+..|.+.+|+.........+..|...|.++.| ++..+++|+.+|.|++|+.. ...++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhH
Confidence 467999999999999999999999999998666666667799999999999 68999999999999999986 33444
Q ss_pred EecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 287 KLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 287 ~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+.+|. ..|.+++|+|+...+++++.||+|+|||....+....+.+|...|++++|+|... |+++|+ .|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Liasgs--kDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGS--KDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEcc--CCceeEeec
Confidence 455544 8999999999999999999999999999999998889999999999999999877 788876 999999999
Q ss_pred CCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 366 TSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 366 ~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
.++|.|+.++ .|...|..+.|++++++|++ ++.|..+++||+++++.+..+++|...|+++.|+| ...+|.+|+.|
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999988 46788999999999999999 88999999999999999999999999999999999 45678889999
Q ss_pred CCEEEEecCCCCCCCC--cccCCccccccC
Q 011916 444 ETLRFWNVFPSLKAPA--LVKDTSLWSLGR 471 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~--~~~~~~v~s~~~ 471 (475)
|.|..|.+........ ..++..|||+.-
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeec
Confidence 9999999985555444 457788999853
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=251.20 Aligned_cols=276 Identities=21% Similarity=0.334 Sum_probs=238.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
--|+.+.|+|+ -++++|.|..|.||++.....-.....+|.+.|..+.|.+|++.|++++.|.+|+.||+++++.++.
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 34667888886 3666677999999997654433332238999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+++|...|.++.. +..++.+|+.||++++||+| ....++.+ ..+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhcc-ccceeEEEEEecccccceeeccccCceeeecccc
Confidence 9999999999987 35789999999999999999 44444443 3467799999999999999999999999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC----ceeeeec-----CCCCeeEEEEcCCCCeEE
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG----HQLNSVD-----TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~----~~~~~~~-----~~~~v~~l~~s~~~~~l~ 394 (475)
...++.+.+|...|+.|..+++|.+++.- +.|.++++||++-. .++..+. .......++|+|++..+.
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~llsn---sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLSN---SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCccccc---cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 99999999999999999999999987774 38999999999753 3355443 223567789999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ |+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 283 a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 283 A--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred c--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8 999999999999999999999999999999999999999999999999987544
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-33 Score=274.47 Aligned_cols=287 Identities=20% Similarity=0.370 Sum_probs=246.5
Q ss_pred CCCceeEEecCCC-CEEEEEcC--CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLG--TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~--~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.+..+..+.|+.. .-+|.+.. |.+.||+..+...+...+ +|-..+++++++|||+++|+|+.||.|+|||...+-+
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 3455677788753 56666665 499999999888766655 8999999999999999999999999999999999999
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecC-ccCCEEEEEEcCCCCEEEEEeCCC-cEEEE
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAG-HKSEVCGLKWSHDDRELASGGNDN-QLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~lasg~~Dg-~I~iw 319 (475)
..+|..|+..|+.+.| .++.+++.+-||+|+.||+. .....+++.. ..-...|++..|.|..+..|+.|. .|++|
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk-RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK-RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec-ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 9999999999999999 58999999999999999998 5555555543 344578899999999999999886 69999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
++++|+.+-.+.+|+++|.+++|+|++. ++++++ .|.+|++||+-. ...+..++..+.+..++|.|+|++|++ .
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV--a 538 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV--A 538 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE--E
Confidence 9999999999999999999999999999 677755 999999999754 456777888999999999999999999 6
Q ss_pred cCCCeEEEEECCCCceEEEecC--------------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTG--------------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
..||+|.+||...+..+..+.+ .....+.+++++||.+|++|+....|++|++.++-..+
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 7899999999987766644432 12457899999999999999999999999999887766
Q ss_pred Cc
Q 011916 459 AL 460 (475)
Q Consensus 459 ~~ 460 (475)
++
T Consensus 619 kf 620 (893)
T KOG0291|consen 619 KF 620 (893)
T ss_pred eE
Confidence 54
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-33 Score=254.92 Aligned_cols=275 Identities=22% Similarity=0.382 Sum_probs=234.5
Q ss_pred eeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
|.+++-+|+ ++++. |.|..-+||+..++.....+. +|++.|+++.|+.+|.+||+|..+|.|+||++.++.....+.
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 555666665 44444 458899999999999776665 999999999999999999999999999999999999888887
Q ss_pred CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
..-..+.-+.|++ ++|+.|+.||.+.+|.+. .+...+.+.+|...+++=.|.|+|+.++++..||+|++|++.++.+
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 6667777888874 899999999999999998 4477888999999999999999999999999999999999999887
Q ss_pred eEEEec---------------------------------------------------cccceeEEEECCCCC--cEEEEe
Q 011916 327 TLRLTE---------------------------------------------------HTAAVKAIAWSPHQS--SLLASG 353 (475)
Q Consensus 327 ~~~~~~---------------------------------------------------h~~~v~~l~~sp~~~--~ll~sg 353 (475)
+..+.. +...+.++.+.|... -|+++|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 665531 111112222222221 155554
Q ss_pred cCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
+.||+|.|||+...+......+...|..+.|-+ ..+|++ ++.+|.|++||.++++.+.++.||...|.+++++|+
T Consensus 305 --~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 305 --SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred --cccceEEEEecccchhheeccCCCceEEEEEcC-cchhee--eccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 499999999999999999999999999999999 788888 779999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecC
Q 011916 434 GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~ 452 (475)
+++++|++.|++.+||++.
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999875
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-35 Score=267.39 Aligned_cols=274 Identities=22% Similarity=0.392 Sum_probs=241.4
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
-|.|+.+..+.++++..|++|+|||..+-.....+. +|.+.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 477899988899999999999999999988877775 999999999985 56999999999999999999999999999
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
|...|..+.|++.++++++.|.+|.+||+..+.. ....+.+|...|..+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 9999999999999999999999999999985542 345578999999999994 569999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
.++.+|...|.|+.+. ++ ++++|+ .|.+|++||+..|.++..++ |..-|.++.|. .+.+++ |.-||.|++
T Consensus 354 Rtl~gHkRGIAClQYr--~r-lvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS--GaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS--GAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc--Ce-EEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee--ccccceEEE
Confidence 9999999999888874 33 788865 99999999999999999986 55668899885 567888 889999999
Q ss_pred EECCCCc---------eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 407 WKYPSMA---------KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 407 wd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
||+..+. ++.++..|+++|..+.| |...+++++.|.+|.|||+..+.....
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccc
Confidence 9997653 34556679999999999 777899999999999999998876644
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=243.36 Aligned_cols=273 Identities=21% Similarity=0.400 Sum_probs=225.2
Q ss_pred ceeEEecCCCC---EEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C
Q 011916 170 YLNLVDWSSQN---VLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--C 241 (475)
Q Consensus 170 ~v~~l~ws~~~---~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~ 241 (475)
.+-.++|+|.. ++++|.|+.|++|+...+ .....++-+|...|.+++|+|.|++||+|+.|.++.||.-.. .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 56779999973 455566899999999853 233334447899999999999999999999999999998654 4
Q ss_pred eeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC--CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 242 KRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS--SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+++.+++||...|.+++| +|++|+++++|+.|.||.+... ..+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 788999999999999999 5899999999999999999833 356778999999999999999999999999999999
Q ss_pred EEECC---CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 318 VWNQH---SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 318 iwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
+|+-. ...+++++.+|...|.+++|++.|..|+.+ +.|++++||-..+. ....+..++..+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~---sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC---SDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe---cCCcceEeeeeccC---cchhcccceEeeeec--ccceE
Confidence 99876 346789999999999999999999866553 38999999986521 122356788999998 44566
Q ss_pred EEEecCCCeEEEEECCCC------ceEE-EecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEecC
Q 011916 395 STHGYSQNQIMVWKYPSM------AKVS-TLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~------~~~~-~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~ 452 (475)
+ +..|+.|++|.-... +.+. .-..|...|++++|+|. ...|++|+.||.|++|.+.
T Consensus 248 S--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred e--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 778999999976532 2222 22358899999999995 6789999999999999874
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-34 Score=284.64 Aligned_cols=244 Identities=23% Similarity=0.421 Sum_probs=223.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------eeeEEecCCCCceEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-------------------------------KRVRTFGGHQTRAGV 256 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-------------------------------~~~~~~~~h~~~v~~ 256 (475)
....++|..|++|+.+||.|..|..|++|.+... ...+++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3567999999999999999999999999987631 122456799999999
Q ss_pred EEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 257 LAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 257 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
+.|+ .++|++++.|+++++|.+. ....+..+.+|..+|+.+.|+|.|-++||++.|++.++|......++..+.+|-
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 9996 4899999999999999999 677788889999999999999999999999999999999999999999999999
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
+.|.|+.|+|+..++ ++| +.|.++++||+.+|..++.+ .|.++|.+++|+|+|++|++ |..||.|.+||+.++.
T Consensus 536 sDV~cv~FHPNs~Y~-aTG--SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYV-ATG--SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDGLIKIWDLANGS 610 (707)
T ss_pred cccceEEECCccccc-ccC--CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCCcEEEEEcCCCc
Confidence 999999999999854 554 59999999999999999998 47799999999999999999 9999999999999999
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+..+.+|++.|.+|.|+.||..||+|+.|.+|++||+......
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999999999999865554
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=258.03 Aligned_cols=259 Identities=22% Similarity=0.310 Sum_probs=235.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|...|+.+-|+|+-..+++++.|++|++||..++++.+.+++|...|..++|+ |.+|++++.|-.+.+||......+
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999995 799999999999999999866778
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|.-++.+.||. |+++++ .|.++++|
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s--~dqtl~vW 262 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCS--NDQTLRVW 262 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecC--CCceEEEE
Confidence 888999999999999999999999999999999999999999999999999999999999998 777765 99999999
Q ss_pred ECCCCceeeee-cCCCCeeEEEEcCC---------------CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 365 NTSNGHQLNSV-DTGSQVCNLAWSKN---------------VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 365 d~~~~~~~~~~-~~~~~v~~l~~s~~---------------~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
-+.++++...+ .|...|-+++|.|. +.++++ ++.|+.|++||+.++.++.++.+|...|..+
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV 340 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEEEEecccceeeee
Confidence 99999887776 47788899998763 235666 8899999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+|+|.|+||++++.|++|++||+....+..+.. +.+-+.+++
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 999999999999999999999999999888754 333444443
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=251.24 Aligned_cols=280 Identities=21% Similarity=0.375 Sum_probs=245.5
Q ss_pred CCCceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+--+|.|++..|.+ +++++.|+++.|||+.++++...+. +|-..|..+++++...||++++.|+.|+.||++..+.+
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 45689999999864 5555669999999999999888776 89999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+.||-..|.|++.++ +.|++|++|.++++||++ ....+..+.+|...|..+.+.|-...+++|+.|++|++||++
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR 307 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence 99999999999999985 899999999999999999 677889999999999999999988899999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.++...++..|...|.+++.+|... ++++++ ...|+-|++..|..+..+. +..-+.++..+.|+ ++++ |.++
T Consensus 308 agkt~~tlt~hkksvral~lhP~e~-~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~--G~dn 380 (460)
T KOG0285|consen 308 AGKTMITLTHHKKSVRALCLHPKEN-LFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS--GGDN 380 (460)
T ss_pred cCceeEeeecccceeeEEecCCchh-hhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE--cCCc
Confidence 9999999999999999999999876 666654 5679999999999888764 55667888887776 4455 8899
Q ss_pred CeEEEEECCCCceEEEec-----C---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 402 NQIMVWKYPSMAKVSTLT-----G---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~-----~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|.|.+||.+++...+.++ | .+..|++.+|...|..|+||..|.+|++|.-+...
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 999999999886554442 1 34568999999999999999999999999876543
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=278.91 Aligned_cols=278 Identities=24% Similarity=0.449 Sum_probs=243.1
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCe
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG-TQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~-~~~~ 242 (475)
..-+.++.++++ .+++++.++.+++|+..+.+ ..... .+|...|.+++|+|+|+++++|+.|++|+|||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 345777888886 45555679999999997776 44444 389999999999999999999999999999999 5668
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
.++++.+|...|++++|+ ++++++|+.|++|+|||++ .+.+...+.+|.+.|.+++|++++++|++++.|+.|+|||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999995 5899999999999999999 5889999999999999999999999999999999999999
Q ss_pred CCCCc--eeEEEeccccc--eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CC---CeeEEEEcCCCCe
Q 011916 321 QHSQQ--PTLRLTEHTAA--VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GS---QVCNLAWSKNVNE 392 (475)
Q Consensus 321 ~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~---~v~~l~~s~~~~~ 392 (475)
+.++. ++..+..+... +..+.|+|++.++++.. .|+.+++||+..+.++..+.. .. .+.+...++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99998 55667666555 99999999999887744 799999999999988887743 22 3344455788899
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEEe--CCCCEEEEecC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTGA--GDETLRFWNVF 452 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s--~Dg~I~iW~~~ 452 (475)
+++ |+.|+.|++|++.++..+..+.+| ...+..+.+++...++++++ .|+.|++|...
T Consensus 394 i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 998 999999999999999999999999 89999999999999999998 79999999864
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-33 Score=277.98 Aligned_cols=266 Identities=20% Similarity=0.362 Sum_probs=226.6
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcE------------------------------EEEeeCCCCCcEEEEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKV------------------------------TRLCDLGPGDSVCSVQ 216 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~------------------------------~~~~~~~~~~~V~~v~ 216 (475)
.-++|..++++ .++|+|. |..|++|.+...++ ......+|.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 34789999987 5777766 88999999873110 0111238999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 217 WTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 217 ~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
|+|+.++|++++.|++|++|.+.+..++..++||..+|+.+.|+ |.++++++.|++-++|... .....+.+.+|...
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhhhcccccc
Confidence 99999999999999999999999999999999999999999996 6899999999999999998 57788899999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
|.|+.|+|+..++|+|+.|.+|++||..+|..+..|.+|.++|.+++|+|+|++| ++| ..|+.|.+||+.++..+..
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg--~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASG--DEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eec--ccCCcEEEEEcCCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999955 454 4999999999999998887
Q ss_pred e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------eEEEecCCCcceEEEE
Q 011916 375 V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------------------KVSTLTGHSLRVLYLA 429 (475)
Q Consensus 375 ~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------~~~~l~~h~~~V~~l~ 429 (475)
+ .|.+.|+++.|+.+|..|++ |+.|++|++||+.... .+..+.....+|.++.
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~ 692 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLH 692 (707)
T ss_pred hhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEE
Confidence 6 57788999999999999999 8899999999985321 2334444455677777
Q ss_pred ECCCCCEEEEE
Q 011916 430 TSPDGQTIVTG 440 (475)
Q Consensus 430 ~spdg~~l~s~ 440 (475)
|..-.-.|++|
T Consensus 693 FtrrNl~L~~g 703 (707)
T KOG0263|consen 693 FTRRNLLLAVG 703 (707)
T ss_pred EeccceeEEec
Confidence 76655444443
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-31 Score=253.32 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=238.7
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+.-+|+|+.++|+ .+++++.|+.|++||-.+++.+..+.- .|.+.|.+++|+||++.|++++.|.+++|||+.+.+
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 3457999999997 578888999999999999998877752 689999999999999999999999999999999999
Q ss_pred eeEEecCCC---CceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 243 RVRTFGGHQ---TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 243 ~~~~~~~h~---~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+++++.... ..-..+-|..+.|++.+.+|+|..++... ......+.+|...|+++..++++.+|++|+.||.|.-|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d-~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD-PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC-CChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 999887432 23344556788999999999999999984 44889999999999999999999999999999999999
Q ss_pred ECCCCcee------------------------------------------------------------------------
Q 011916 320 NQHSQQPT------------------------------------------------------------------------ 327 (475)
Q Consensus 320 d~~~~~~~------------------------------------------------------------------------ 327 (475)
|..++..-
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 97643200
Q ss_pred -EEEec--------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEE
Q 011916 328 -LRLTE--------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 328 -~~~~~--------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
..+.. -.....+++++|++. .++.|+ .|++|++|.+..+.. ...+++.+.++.++++|++.+|++
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCC-EEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 00000 112346788889888 556665 999999999987653 345678999999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+...+.+.+||..+.+... .+.-|+.+|.+|+|+|+..++|||+-|-.|.||++....+.
T Consensus 505 --~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 505 --GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred --eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 8899999999998877633 33349999999999999999999999999999999977665
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=265.07 Aligned_cols=280 Identities=22% Similarity=0.418 Sum_probs=244.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECC------------------------CCc-----E---E-EEeeCCCCCcEEE
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTAS------------------------NSK-----V---T-RLCDLGPGDSVCS 214 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~------------------------~~~-----~---~-~~~~~~~~~~V~~ 214 (475)
+|...-|..+ .+++++.||.+.+|... ..+ . . +.+-......|++
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 4444555554 69999999999999876 111 0 0 1111123378999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC-CcEEEEECCCCCccEEEecCc
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD-RNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~h 291 (475)
.+|++.-+.||+|-.+|...+|++....+++.+.-....|..++|| |+.|+.|+.. |.+.||+.. ....+.+.++|
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH 349 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGH 349 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeecccc
Confidence 9999999999999999999999999999999999888999999998 8999998755 899999998 67788889999
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
...+.+++++|||+++|+|+.||+|+|||...+-+..+|..|.+.|+++.|+..|+.+++++ .||+|+.||+...++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRN 426 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccce
Confidence 99999999999999999999999999999999999999999999999999999999766654 799999999999999
Q ss_pred eeeecCC--CCeeEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 372 LNSVDTG--SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 372 ~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
.+++... .+..+++..|.|..+++ |..|. .|++|++.+|+.+-.+.||+++|.+++|+|+|..|++++.|.+||+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 9998655 45778888888888777 65554 7999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 011916 449 WNVFPSL 455 (475)
Q Consensus 449 W~~~~~~ 455 (475)
||++...
T Consensus 505 W~if~s~ 511 (893)
T KOG0291|consen 505 WDIFSSS 511 (893)
T ss_pred EEeeccC
Confidence 9999774
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=251.94 Aligned_cols=246 Identities=23% Similarity=0.378 Sum_probs=226.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|.||++.|.+.+|++|+.|++++|||+.++++..++.||...|..++++. .++++++.|+.|+.||++ ..+.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-~nkv 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-YNKV 227 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech-hhhh
Confidence 8999999999999999999999999999999999999999999999999999975 799999999999999998 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++.+.+|-..|.+++.+|.-..|++|+.|.+++|||+++...+..+.+|...|..+.+.|....++. |+.|++|++|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit---~S~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT---GSHDSTVRLW 304 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE---ecCCceEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999998886766 3489999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|++.|+....+. +...+.+++.+|....+++ ++ ...|+-|+++.+..+..+.+|..-|+.|+...|| ++++|+..
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fAS--as-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFAS--AS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhc--cC-CccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence 999998877764 5678999999999988887 43 4569999999999999999999999999999887 78899999
Q ss_pred CCEEEEecCCCCCCCCc
Q 011916 444 ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~~ 460 (475)
|.|.+||...+...+..
T Consensus 381 g~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eEEEEEecCcCcccccc
Confidence 99999999988776653
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=236.34 Aligned_cols=257 Identities=17% Similarity=0.342 Sum_probs=229.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC--C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS--S 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~ 282 (475)
+|.+.|.++.|++|.++|++++.||.+.|||..+...++.+.-....|..++| +++++++|+.|....||++... .
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 89999999999999999999999999999999999999999989999999999 5799999999999999999844 1
Q ss_pred ---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 ---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 ---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
...+.+.+|.+.+.++.|-. ..+|++++.|.++.+||+++++.+..|.+|.+.|.+++++|.....+++|+ .|+
T Consensus 133 g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~--cD~ 209 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG--CDK 209 (343)
T ss_pred ccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc--ccc
Confidence 34566899999999999987 558899999999999999999999999999999999999994444777765 899
Q ss_pred eEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCE
Q 011916 360 CIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~ 436 (475)
..++||++.+.+++.+. |.+.|.++.|.|+|.-+++ |++|+..++||++..+.+..+.. -...|++++||..|++
T Consensus 210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred ceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 99999999999999985 7789999999999999999 99999999999999999888863 3467999999999999
Q ss_pred EEEEeCCCCEEEEecCCCCCCCCcc-cCCcccc
Q 011916 437 IVTGAGDETLRFWNVFPSLKAPALV-KDTSLWS 468 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s 468 (475)
|++|..|.++.+||.-.++....+. |+..|..
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence 9999999999999998888776654 3444433
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-31 Score=235.99 Aligned_cols=245 Identities=19% Similarity=0.319 Sum_probs=214.0
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT-----QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~-----~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|+.++..+. ...|+.++.|.++.+|++. .|..++.+.||...|..+.. ++++.++++.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 89999999999886 5788999999999999875 46778999999999998877 6899999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--ccceeEEEECCCC-CcEEEEecC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQ-SSLLASGGG 355 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~-~~ll~sg~G 355 (475)
. .++..+.+.+|...|.+++|++|.+++++|+.|.+|++|+..... ..++..+ .+.|.++.|+|.. .-++++++
T Consensus 93 ~-~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s- 169 (315)
T KOG0279|consen 93 A-TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSAS- 169 (315)
T ss_pred c-CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-
Confidence 9 558889999999999999999999999999999999999987654 3444433 7899999999985 44666655
Q ss_pred CCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
.|+++++||+++.+....+ .+.+.++.++++|||..+++ |..||.+.+||+..++.+..+. |...|.+++|+|+.
T Consensus 170 -~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 170 -WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred -CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 9999999999998887776 57788999999999999999 9999999999999999987775 88899999999998
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
..|+.+ .+..|+|||+.++.....
T Consensus 246 ywL~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 246 YWLCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred eeEeec-cCCceEEEeccchhhhhh
Confidence 766655 456699999998876554
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=232.07 Aligned_cols=258 Identities=20% Similarity=0.312 Sum_probs=221.0
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcE--EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKV--TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~--~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.|..||.+...|+ ..||++....|++||+.++.. +..++ +|...|++|.|..+|+++++|++||+++|||+....+
T Consensus 39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 4556899999997 789999999999999998875 34444 7889999999999999999999999999999998666
Q ss_pred eEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.++ |..+|.++..++ ..|++|..+|.|++||+.........+......|.++...|||.+|+.+.+.|.+++|++
T Consensus 118 qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 66665 669999999964 689999999999999998554444445556678999999999999999999999999998
Q ss_pred CCC------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeE
Q 011916 322 HSQ------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 322 ~~~------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l 393 (475)
-.. +++.++..|.+.+....++|++++|++++ .|.+++||++.+. +....+ .+...+..++||.+|.||
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 653 46678889999999999999999777765 6999999999987 322333 355689999999999999
Q ss_pred EEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
++ |++|+.+++|++..++.+....+|.....|++..
T Consensus 274 vT--assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VT--ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred Ee--cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99 8899999999999999999999999888887764
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-31 Score=270.04 Aligned_cols=252 Identities=25% Similarity=0.420 Sum_probs=225.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.+...|.++.|+++|++|++++.++.+++|+..+.+ ..+.+.+|...|..++| ++.++++++.|++|+|||+...+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 346889999999999999999999999999998777 77778899999999999 57899999999999999997677
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
..++.+.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|.+++|++++..|++. + .|+.|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s--~d~~i~ 313 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-S--YDGTIR 313 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-C--CCccEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999966553 3 799999
Q ss_pred EEECCCCc--eeeeec-CC-C-CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc---eEEEEECCCC
Q 011916 363 FWNTSNGH--QLNSVD-TG-S-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR---VLYLATSPDG 434 (475)
Q Consensus 363 iwd~~~~~--~~~~~~-~~-~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~---V~~l~~spdg 434 (475)
+||+.++. ++..+. .. . .+..+.|+|++.++++ +..|+.+++||+..+..+..+.+|... +.+...++.+
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 99999999 445553 22 2 6899999999999999 889999999999999999999998875 3444567899
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
.++++|+.|+.|++|++.++.....+..+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 99999999999999999987777766554
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-30 Score=281.94 Aligned_cols=277 Identities=16% Similarity=0.308 Sum_probs=225.3
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCC----cE--EEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNS----KV--TRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~----~~--~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd 237 (475)
+...|.+++|+++ . +++++.|+.|+||+.... .. .....+.+...|.+++|++ ++.+||+++.||+|+|||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 4667999999986 4 566677999999997542 11 0112223456899999987 578999999999999999
Q ss_pred CCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc-CCCCEEEEEeCC
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS-HDDRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~lasg~~D 313 (475)
+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||++ .+..+..+..+ ..|+++.|+ +++.+|++|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 99999999999999999999995 4799999999999999998 45556666544 679999995 579999999999
Q ss_pred CcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC------ceeeeec-CCCCeeEEE
Q 011916 314 NQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG------HQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 314 g~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~------~~~~~~~-~~~~v~~l~ 385 (475)
|.|++||++..+ ++..+.+|...|.++.|. ++..++ +++ .|+.|++||+..+ .++..+. +...+..+.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999998765 567788899999999997 555444 444 7999999999753 4555554 566788999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-------------cCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-------------TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|++++.+|++ |+.|+.|++|+......+..+ ..|...|.+++|++++..|++|+.||.|+||++
T Consensus 716 ~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999988 889999999998655433221 235567999999999999999999999999997
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=264.11 Aligned_cols=275 Identities=23% Similarity=0.335 Sum_probs=238.0
Q ss_pred EecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEe
Q 011916 174 VDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----KRVRTF 247 (475)
Q Consensus 174 l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~~~~~~ 247 (475)
--|.|+ +.+++ +..+.+++|+..+.... ++. +|.+.|.++....+|.+|++|+.|.++++|.++++ -++...
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 334553 45555 55789999998887766 333 99999999996667899999999999999987443 344556
Q ss_pred cCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--c--cEE----EecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 248 GGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS--D--YIC----KLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 248 ~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~--~~~----~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
.+|...|.+++.+ ..+|++++.|+++++|++.... . ... ....|...|++++++|+..++|+|+.|.+.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 7999999999994 3899999999999999997521 1 111 345799999999999999999999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 395 (475)
+||++.....+.++.+|...|.++.|+|..+ ++++++ .|++|+||.+.++.|+++++ |...|..+.|-.+++.|++
T Consensus 488 KiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 488 KIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeecccCceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe
Confidence 9999999999999999999999999999988 566655 79999999999999999997 7889999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.||-|++|++.+.+++.++..|.++|++++.++++..++||+.||.|.+|.=.+..
T Consensus 565 --~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 565 --AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred --ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 8899999999999999999999999999999999999999999999999999755443
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-32 Score=235.65 Aligned_cols=262 Identities=21% Similarity=0.355 Sum_probs=222.9
Q ss_pred cCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeeeEEecCCCCceEEEEeC--
Q 011916 186 LGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAGVLAWN-- 260 (475)
Q Consensus 186 ~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~l~~~-- 260 (475)
.+|.++|.++. .+.+.......-.+.+..|+|+++ .+.+++++.||+++|||.. ..+++..++.|...|.++.|+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 46899999996 444444554566789999999994 5688899999999999964 346888999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecccccee
Q 011916 261 -SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 261 -~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
...+++++.|++|++|+.. ....+.++.+|...|...+|+| ..+.+++++.|+++++||++.......+..|...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 4788888999999999998 6778889999999999999999 778999999999999999986555555888999999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKV 415 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~ 415 (475)
++.|+....+++++|+ .|+.|+.||+++-+ ++..+ .|+-.|..+.|+|...-++++ ++-|-+++|||.... ..+
T Consensus 195 ~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-asYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-ASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh-ccccceEEecccccchhhh
Confidence 9999999999999987 99999999998754 44444 466789999999988776665 567999999999744 455
Q ss_pred EEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEec
Q 011916 416 STLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~ 451 (475)
.+...|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 66677999999999998 6789999999999999983
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-32 Score=238.49 Aligned_cols=279 Identities=18% Similarity=0.315 Sum_probs=253.6
Q ss_pred ceeEEecCC---C--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSS---Q--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~---~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
.|..++||+ + -+++++.|+.-.|-+-++|..+..+. +|.+.|.+..++.+....|+++.|=+-+|||.-++..+
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 455678875 3 35666779999999999999999997 99999999999999889999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..|. |..-|.+++|+ .++|++|+.++.++|+|+.....+...+.+|.+.|..+.|....+.+++...|++|++||.+
T Consensus 95 hsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 95 HSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 8885 88899999994 68999999999999999998888888999999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++..++.+. ....|+++..+++|++|..+ ..+.|.+||..+...++.++....|.+..++|+...+++ |..|.
T Consensus 174 Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged~ 246 (334)
T KOG0278|consen 174 TGTEVQSLE-FNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGEDF 246 (334)
T ss_pred cCcEEEEEe-cCCCCcceeeccCCCEEEEe----cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcce
Confidence 999998875 57789999999999955554 568999999999999999999999999999999988877 99999
Q ss_pred eEEEEECCCCceEEEe-cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 403 QIMVWKYPSMAKVSTL-TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.++.||+.+++.+..+ ++|.++|.|+.|+|||...++|++||+|++|.+.++...
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999886 899999999999999999999999999999999877655
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=259.47 Aligned_cols=274 Identities=18% Similarity=0.361 Sum_probs=234.7
Q ss_pred CceeEEecCCC---CEEEEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 169 FYLNLVDWSSQ---NVLAVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 169 ~~v~~l~ws~~---~~la~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
--|+++.|.|. -+|+++.|+.|+||++-+ +.+++.+. +|..+|.+++|+++|..+++++.|+.|++||+++|+++
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence 34888999983 367777799999999987 67777765 99999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 245 RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
..|. ....++|+.|+ .+.+++|+.|+.|+.||++ .++.++.+..|-+.|..+.|-++|+.+++.+.|+.++||+.
T Consensus 294 ~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 294 SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 9885 23456788884 3899999999999999999 67788888999999999999999999999999999999999
Q ss_pred CCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee---e---cCCCCeeEEEEcCCCCeEE
Q 011916 322 HSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS---V---DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 322 ~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~---~---~~~~~v~~l~~s~~~~~l~ 394 (475)
+...++..... +.....++..+|.+.++++ -+.|+.|.+|.+...-.+.. + ...+.-+.+.|||||.+|+
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a---Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAA---QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehh---hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 98876654332 3445678999999997666 34899999999754322221 1 2346678999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEe
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWN 450 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~ 450 (475)
+ |..+|.+.+||..+-+.+..++.|++.+..+.|+|. ...+|||+.||.|++|+
T Consensus 449 S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 S--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred e--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9 999999999999999999999999999999999995 45799999999999996
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-31 Score=255.09 Aligned_cols=294 Identities=18% Similarity=0.302 Sum_probs=256.1
Q ss_pred ceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.|.+++++|.. ++++--+|.|.|||.++...++.++. ..-+|.+..|-+..+++++|+.|..|+||+..+++.++.|
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 47789999973 56666699999999999999998874 4678999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 248 GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 248 ~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..|..-|.+++.++ .++++++.|-+|++||.+....+.+.+.+|...|.+++|+| |.+.+|+++-|++|+||.+...
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999987 69999999999999999988889999999999999999999 7789999999999999999999
Q ss_pred ceeEEEeccccceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+..++.+|...|+++.+-+.| +-.+++| ..|.+|+|||.++..|+.+++ |...|..+.|+|.-..+++ |++||
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsg--aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis--gsEDG 249 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISG--ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS--GSEDG 249 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEec--CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE--ecCCc
Confidence 9999999999999999998765 2244554 489999999999999999997 6788999999999999999 99999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCC-ccccc
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDT-SLWSL 469 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~-~v~s~ 469 (475)
+++||+..+.+...++.-.-++|++++-.+.+..++.|...|.| +.++-...+.-.+...+ -+|+.
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~vsMd~~gKIiwa~ 316 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAVSMDSNGKIIWAV 316 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCceeecCCccEEEEc
Confidence 99999999998888888788899999999988888888666654 45555554444433333 34544
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-31 Score=229.12 Aligned_cols=249 Identities=18% Similarity=0.320 Sum_probs=223.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.+.+.|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++. ++..|++|+.|+.+.+||+. .++.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence 67899999999999999999999999999999999999999999999988776 67899999999999999999 7889
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS--QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+++.+|.++|..++|+.+...+++|+.|.++++||.++ .++++.+......|.+|....+ .+++| +.||+++
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaG--S~DGtvR 168 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAG--SVDGTVR 168 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEee--ccCCcEE
Confidence 999999999999999999999999999999999999985 4688899888999999999755 45554 4999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce--EEEEECCCCCEEEEE
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV--LYLATSPDGQTIVTG 440 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l~s~ 440 (475)
.||++.|...... .+.+|+++.|+++++..++ +..++.|++.|-.+++.+..+++|...- ...+++.....+++|
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 9999999765544 6789999999999999999 8899999999999999999999998764 445677778899999
Q ss_pred eCCCCEEEEecCCCCCCCCcccCC
Q 011916 441 AGDETLRFWNVFPSLKAPALVKDT 464 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~~~~ 464 (475)
++||.|++||+........+....
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred cCCceEEEEEeccceeeeeeccCC
Confidence 999999999999888766654443
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-31 Score=260.09 Aligned_cols=290 Identities=19% Similarity=0.377 Sum_probs=252.9
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQW-TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~-spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
+...++++..+..+.++|.++.++.+.+- +..+.|.+++| .|+.++||++++.+.+++|+..+..+. .+.||...|.
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vl 369 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVL 369 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhee
Confidence 34579999999999999999999888775 78899999997 457799999999999999998887766 7889999999
Q ss_pred EEE-e-CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 011916 256 VLA-W-NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQP--- 326 (475)
Q Consensus 256 ~l~-~-~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~--- 326 (475)
++. | +|.+|++|+.|.++++|.+.... .++....+|...|.+++++..+ .+|++++.|.++++|++...+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 999 5 46799999999999999884222 3456678999999999998744 4899999999999999986321
Q ss_pred --eE----EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 --TL----RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 --~~----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
+. ....|...|++++.+|+.+ |+++|+ .|++.+||++.....+..+. |...|.++.|++..+.+++ ++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT--~S 524 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT--CS 524 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEe--cc
Confidence 11 2345999999999999988 888876 99999999999888888884 6788999999999999999 77
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc-ccCCccccccCcc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLGRTH 473 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~~~~ 473 (475)
.|++|+||.+.+..++.++.||+..|..+.|-.+|+.|++++.||.|++|++.++.+..++ .|...+|++..+.
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 8999999999999999999999999999999999999999999999999999999999987 4667899987654
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=257.73 Aligned_cols=283 Identities=22% Similarity=0.360 Sum_probs=248.2
Q ss_pred cCCCCCCCCceeEEecCCCC-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 161 DAPSLQDDFYLNLVDWSSQN-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 161 ~~p~~~~d~~v~~l~ws~~~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+-++++.| |..+++|.++ +++.+.++.|++|+..+.+.++.+. .+.+.+..|.|.++++++|..+|.+.+||+.
T Consensus 368 ~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 33444444 6778888885 5556668999999999999998885 3489999999999999999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC----cc--EE-----EecCccCCEEEEEEcCCCCE
Q 011916 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS----DY--IC-----KLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~----~~--~~-----~~~~h~~~V~~l~~s~~~~~ 306 (475)
....+.+.+.|.+.++.++. ++..+++|+.|.+|++||..... .. +. ....-...|.|+.+||||++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 99999999999999999998 57899999999999999975211 11 11 11123467999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLA 385 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~ 385 (475)
||++--|++|+||-+.+.+....+.+|.-+|.++..+||++ ++++|+ .|+.|++|-+.-|.|.+.+ .|+..|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999998889999999999999999999 666655 9999999999999998887 6889999999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
|.|....+++ ++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++.|.+|++|.-..
T Consensus 600 F~P~~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 600 FLPKTHLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcccceeEEE--ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9998877777 67999999999999999999999999999999999999999999999999999766
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.6e-29 Score=241.45 Aligned_cols=282 Identities=20% Similarity=0.383 Sum_probs=239.2
Q ss_pred CCceeEEecCCCC-EEEEEc-CCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCC
Q 011916 168 DFYLNLVDWSSQN-VLAVGL-GTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNL----GQVQVWDGTQ 240 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~-~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~ 240 (475)
...++...+||.. .+|.|. .|.|+|||....+.+...++ ...++|..++|+.|++.|++.++. |.+.+|| +
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--S 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--S 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--C
Confidence 3457778889874 444444 68999999887554443333 346899999999999988876652 4566665 7
Q ss_pred CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+..+..+.+|..+|.++.+. +-.+++|+.|++|.+|+=. +.+....+..|...|.++.|+|||.++|+++.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 88889999999999999994 5689999999999999876 6677778889999999999999999999999999999
Q ss_pred EEECCCCceeEEEe---ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC----CeeEEEEcCCC
Q 011916 318 VWNQHSQQPTLRLT---EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS----QVCNLAWSKNV 390 (475)
Q Consensus 318 iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~----~v~~l~~s~~~ 390 (475)
+||-.+++.+..+. .|.+.|.+++|+||+..+++++ .|.+++|||+.+.+++.++..+. +...+.|. .
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k 290 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K 290 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C
Confidence 99999999999988 7999999999999999888876 69999999999999999986543 45556676 4
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
..|++ -+.+|.|.+++...+..+..+.+|...|+++..++|+++|++|+.||.|.-|+...+.....
T Consensus 291 d~lIt--VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 291 DHLIT--VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred CeEEE--EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 46666 45789999999999999999999999999999999999999999999999999998876644
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=4.4e-30 Score=261.47 Aligned_cols=282 Identities=21% Similarity=0.319 Sum_probs=250.6
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
++..+.+..|..+.+++++.++.|.+|+..++..+..--.+|.+.|.++++..-+.+|++|+.|.+++|||..++++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 34556778888888999999999999999999988883349999999999988788999999999999999999999999
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+.+|...|.++...+..+++|+.|.+|++|++. .+..+..+.+|...|.++..+ +.++++|+.|++|++||..++++
T Consensus 287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT-NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ecCCCceEEEEEccCceEeeccCCceEEEEecc-CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 999999999999999999999999999999998 678888888899999999997 77999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+..+.+|..+|.++.+.+. . .+.+|+ .|+.|++||+.+. +++..+.+...+. -.+...++.|++ +..|+.|+
T Consensus 364 l~sl~gH~~~V~sl~~~~~-~-~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik 436 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSE-N-RLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSADGTIK 436 (537)
T ss_pred eeeecCCcceEEEEEecCc-c-eEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccccccEE
Confidence 9999999999999988775 3 566655 9999999999999 8888887655443 333446778888 88999999
Q ss_pred EEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 406 VWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 406 iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+||..+++.+..+.+ |...|..+++. ...+++++.|+++++||+..+.....+
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999 77889999886 467888999999999999999887754
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=2.6e-29 Score=238.27 Aligned_cols=248 Identities=29% Similarity=0.497 Sum_probs=220.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|.+++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|. ++.|++++.||.|.+||+. ....
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGEC 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccc
Confidence 688999999999999999999999999999999998888889999999999995 4699999999999999998 4466
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+..|...|.++.|+++++++++++.|+.|.+||+.+++....+..|...+.+++|+|++. ++++++ .|+.|++|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~~~~i~i~ 162 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSS--QDGTIKLW 162 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEc--CCCcEEEE
Confidence 777888999999999999988999988899999999998888888888999999999999976 555543 69999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|+.+++.+..+. +...+.++.|+++++.+++ +..++.|++||+..++.+..+..|...|.+++|++++.++++++.|
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999888887775 4458999999999999988 6669999999999999999888899999999999999999988889
Q ss_pred CCEEEEecCCCCCCCCc
Q 011916 444 ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~~ 460 (475)
|.|++|++..+.....+
T Consensus 241 ~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 241 GTIRVWDLRTGECVQTL 257 (289)
T ss_pred CcEEEEEcCCceeEEEc
Confidence 99999999876554443
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=240.88 Aligned_cols=302 Identities=16% Similarity=0.276 Sum_probs=242.0
Q ss_pred ccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcE---EEEeeCCCCCcEEE
Q 011916 140 SEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKV---TRLCDLGPGDSVCS 214 (475)
Q Consensus 140 ~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~---~~~~~~~~~~~V~~ 214 (475)
+.+.+-.+.++.+|....++|.. +.+. |--+.||++ .+++++.|.+..+|.+..... .+.+. +|..+|..
T Consensus 200 sll~Dh~c~~~qip~qt~qil~~--htdE--VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~y 274 (519)
T KOG0293|consen 200 SLLSDHFCGRLQIPSQTWQILQD--HTDE--VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSY 274 (519)
T ss_pred hhhhhcccCcccCCchhhhhHhh--CCCc--EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEE
Confidence 34556667788888888888874 3444 444667665 566666799999999765544 33333 89999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+.||||.++|++++.+..+.+||+.+|.+...+. ++...+.+++| ++..+++|+.|++|..||+. +.......+-
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gv 352 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGV 352 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhccccc
Confidence 9999999999999999999999999999988886 45788999999 57899999999999999997 3333333332
Q ss_pred -cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 292 -KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 292 -~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
...|.+++..+||+++++.+.|..|++++..+......+. ...+|+++..+.++++.++.- .+..|++||+....
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENK 428 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhh
Confidence 2569999999999999999999999999998765543333 457899999999999777754 79999999999877
Q ss_pred eeeeecCC---CCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCC
Q 011916 371 QLNSVDTG---SQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDET 445 (475)
Q Consensus 371 ~~~~~~~~---~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~ 445 (475)
.+..+... .-+..-+|--.. ..+++ |++|++|+||+..+++++.++.||...|++++|+| |-.++|+|+.||+
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 77766432 234445555433 55555 99999999999999999999999999999999999 5568999999999
Q ss_pred EEEEecCCC
Q 011916 446 LRFWNVFPS 454 (475)
Q Consensus 446 I~iW~~~~~ 454 (475)
||||.....
T Consensus 507 IRIWg~~~~ 515 (519)
T KOG0293|consen 507 IRIWGPSDN 515 (519)
T ss_pred EEEecCCcc
Confidence 999998755
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.6e-30 Score=221.30 Aligned_cols=272 Identities=21% Similarity=0.318 Sum_probs=235.2
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|+++.++-+ ..+++|.|.+|+|||...+.+++.+. +|+..|..++.+.|...|++|+.|..|++||+++|+.++.
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 45777888864 68999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCC-CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVS-SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+.+|.+.|..+.||. ..+++|+.|.++++||-+.. .++++.+......|.++..+ +..++.|+.||+++.||++.
T Consensus 97 ~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec
Confidence 999999999999974 79999999999999999854 36778888888999999985 66899999999999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CC--CeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GS--QVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~--~v~~l~~s~~~~~l~~~~g~~ 400 (475)
|...... ...+|+++.|++++...+++. .|++|++.|-.+|+.+..+.. .. .-...+++.....++. |++
T Consensus 175 G~l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s--gSE 247 (307)
T KOG0316|consen 175 GTLSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSE 247 (307)
T ss_pred ceeehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe--ccC
Confidence 9865444 456899999999999888854 899999999999999988753 22 2344566666677777 999
Q ss_pred CCeEEEEECCCCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
||.|++||+.....+..+..|... |..+.++|.-..|++++. +.+.+|--
T Consensus 248 DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 999999999999999999988887 899999998888887754 45666643
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=4.4e-32 Score=246.92 Aligned_cols=235 Identities=24% Similarity=0.439 Sum_probs=207.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
....|.|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.++...|++|+.|.+|++||+. .++++.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~-tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVN-TGEPLNT 272 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEecc-CCchhhH
Confidence 4578999987 456799999999999999999999999999999999999999999999999999999999 7888899
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+.+|...|..+.|+ ..++++++.|.++.+||+..... ...+.+|.++|+.+.|+.. ++++++ .|++|++|
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsAS--gDRTikvW 345 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTIKVW 345 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEec--CCceEEEE
Confidence 99999999999996 45999999999999999986543 3456789999999999654 455544 69999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
++.+++.+..+. |...|.|+.+ .++.+++ |++|++|++||+..|.++..++||+.-|.++.| |.+.+++|+.|
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 999999999985 5667777776 4667777 999999999999999999999999999999999 77899999999
Q ss_pred CCEEEEecCCCCCCC
Q 011916 444 ETLRFWNVFPSLKAP 458 (475)
Q Consensus 444 g~I~iW~~~~~~~~~ 458 (475)
|+|++||+..+....
T Consensus 420 GkikvWdl~aaldpr 434 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPR 434 (499)
T ss_pred ceEEEEecccccCCc
Confidence 999999998876653
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=256.27 Aligned_cols=279 Identities=18% Similarity=0.282 Sum_probs=244.6
Q ss_pred ceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+..++|+|.. ++++-..|.|.+||..-+.++..++ +|+++|..|+|+|++.++++|+.|-.|+||+..+.+++.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 45668999974 6666669999999999998888887 89999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.||-..|..+.|+. ..|++++.|.+|+||+.. ...++..+.+|...|.|..|+|....+++++-|.+|+|||+...+
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 99999999999975 689999999999999998 788999999999999999999999999999999999999985311
Q ss_pred -----------------------------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---ee
Q 011916 326 -----------------------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LN 373 (475)
Q Consensus 326 -----------------------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~ 373 (475)
..+.+.+|...|+-++|+|.-. |+++|+ .|+.|++|.+...+. -.
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccccceeehh
Confidence 1245678999999999999888 777766 999999999765432 22
Q ss_pred eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 374 SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 374 ~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
...|...|.++.|+|..+.+++ .++|+.|+|||+...+.+.++....++.+.++-+|..++++.| .|+-+.+|.+..
T Consensus 246 crgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred hhcccCCcceEEecCccceeEe--cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 3357789999999999999999 7899999999999999999998888999999999999877755 677788898875
Q ss_pred CCC
Q 011916 454 SLK 456 (475)
Q Consensus 454 ~~~ 456 (475)
..+
T Consensus 323 Erp 325 (1202)
T KOG0292|consen 323 ERP 325 (1202)
T ss_pred cCc
Confidence 443
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-30 Score=249.60 Aligned_cols=259 Identities=20% Similarity=0.348 Sum_probs=235.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.+.+.|.+|.|+|...+++++-.+|.|.||+.++...++.+.-...+|.+..| ..+.+++|+.|..|+||++. ....
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~ek 89 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TGEK 89 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-ccee
Confidence 46789999999999999999999999999999999999999988889999888 45899999999999999998 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..+.+|...|.+|+.+|...++++++.|-+|++||.+. ..+.++|.+|...|.+++|+|....-+++++ -|++|++
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LDrTVKV 167 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LDRTVKV 167 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee--ccccEEE
Confidence 999999999999999999999999999999999999985 4678899999999999999999988899876 9999999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCC--CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNV--NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~--~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
|.+....+..+++ |...|.++.+-+.| .+|++ |.+|..|+|||+.+..++.++.||+..|..+.|+|.-.+++||
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 9999988888885 66789999999866 46766 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
++||+||||+-.+-.....+. .-+.+|.+.
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 999999999998877766643 334566654
No 49
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.2e-28 Score=247.37 Aligned_cols=281 Identities=15% Similarity=0.257 Sum_probs=217.6
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEE----------E---EeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVT----------R---LCDLGPGDSVCSVQWTR-EGSYISVGTNLGQV 233 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~----------~---~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v 233 (475)
++.+....|...+++++..+.....|+...+..+ . .+ .+|.+.|.+++|+| ++++|++|+.||+|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 3445556677677777777766667765544321 1 12 27899999999999 88999999999999
Q ss_pred EEEECCCC-------eeeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 234 QVWDGTQC-------KRVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 234 ~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
+|||+.++ +.+..+.+|...|.+++|++ ++|++|+.|++|+|||++ .+.....+.+|...|.+++|+|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEEEcCCCCceEEEEEECC
Confidence 99999765 35677889999999999963 689999999999999998 56677788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeccccc-eeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc-eeeeec--CC
Q 011916 304 DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA-VKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGH-QLNSVD--TG 378 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~-~~~~~~--~~ 378 (475)
|.+|++++.|+.|+|||+++++.+..+..|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. ++.... ..
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 999999999999999999999998888888765 457889999887777652 2368999999998754 333332 33
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+....|+++++.|+++ |..|+.|++||+.+++.+..... +...+.+++|.|.-. +-...-+..|++.+..
T Consensus 260 ~~~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALTY 332 (493)
T ss_pred CceEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEecC
Confidence 456667899999988873 44699999999999887776644 456678889988532 2222234456666643
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.2e-30 Score=256.36 Aligned_cols=242 Identities=19% Similarity=0.339 Sum_probs=201.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------------------
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ---------------------------------------------- 240 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~---------------------------------------------- 240 (475)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6899999999999999999999999999998644
Q ss_pred --------------CeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CC
Q 011916 241 --------------CKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DD 304 (475)
Q Consensus 241 --------------~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~ 304 (475)
.+++..+.||.+.|..|+|+ .++|++++.|++|++|++. ...++..+ .|...|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~-~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG-RKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC-CcceeeEE-ecCCeeEEEEecccCC
Confidence 01224457999999999996 6899999999999999998 56666655 4999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------- 376 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------- 376 (475)
+++++|+-|+.|+||++...+.+.- ..-..-|++++|.|+|++.++ |+.+|.+++|++...+......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 9999999999999999988765543 344588999999999996666 5699999999998877665542
Q ss_pred -CCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 377 -TGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 377 -~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+..|+.+.|.|... .+++ .+.|.+|+|||.++...+..++|+.. .-....|+.||++|+++++|..|++|++.
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCceeeeeEecCCCCCeEEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 123799999998655 3555 45899999999998888888887532 34567899999999999999999999986
Q ss_pred CCCC
Q 011916 453 PSLK 456 (475)
Q Consensus 453 ~~~~ 456 (475)
....
T Consensus 577 ~~~~ 580 (712)
T KOG0283|consen 577 SFNS 580 (712)
T ss_pred CCcc
Confidence 5554
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1e-28 Score=227.72 Aligned_cols=279 Identities=22% Similarity=0.395 Sum_probs=231.6
Q ss_pred CCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCe
Q 011916 166 QDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG---SYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 166 ~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg---~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+|-+|..+.-.++.+|+++.||.+++|+...... .+.. +|.+.|.+++|.-.. ..|++++.|.++++|..+.+.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~-~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI-KTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceE-EEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 35567888888888999999999999999866554 4443 899999999986533 369999999999999987764
Q ss_pred ee----EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCC------------------------CCccEEEecCcc
Q 011916 243 RV----RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRV------------------------SSDYICKLAGHK 292 (475)
Q Consensus 243 ~~----~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~------------------------~~~~~~~~~~h~ 292 (475)
.. ....||...|-+++. ++..+++|+.|.+|.||+... ...++..+.+|.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 43 334499999999997 579999999999999999321 112456788999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-- 370 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-- 370 (475)
+.|.++.|++ ...+++++.|.+|+.||+.++..+..+.. ...+.++..+|... |+++|+ .|..|++||.+++.
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gs--sdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK-LLASGS--SDRHIRLWDPRTGDGS 335 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc-eeeecC--CCCceeecCCCCCCCc
Confidence 9999999987 66899999999999999999998877764 56789999999776 777755 99999999998763
Q ss_pred ee--eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 371 QL--NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 371 ~~--~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.+ ..+.|.+.|..+.|+|...++++. |+.||++++||+++.. ++..+.+|...|.++.|+ ++..|++|+.|.+|+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 22 233678899999999988887765 8899999999999887 999999999999999997 456899999999999
Q ss_pred EEecCC
Q 011916 448 FWNVFP 453 (475)
Q Consensus 448 iW~~~~ 453 (475)
|+.-.+
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 987543
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=233.65 Aligned_cols=281 Identities=17% Similarity=0.293 Sum_probs=246.5
Q ss_pred CCCCCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeC-------CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 164 SLQDDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDL-------GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~-------~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
.+...-++.|..|||+ + +++++.||-|.+||..+|++.+-+.. -+++.|.|++|+.|..+||+|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 3444556788899997 3 55556699999999999987654432 3568999999999999999999999999
Q ss_pred EEECCCCeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 235 VWDGTQCKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 235 iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
||.+.+|.+++.|. .|+..|+|+.| ++..+++++.|.++++.-++ .++.+..+++|.+.|+...|.+||..+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999999999998 89999999999 57899999999999999998 7888999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEE
Q 011916 312 NDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLA 385 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~ 385 (475)
.||+|++|+.++.+++.+|+. ...+|..+..-|.+.--++.+. ..++|+|.++. |+.++.+. .++...+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999999999999999888864 5577888888887655455543 78999999974 77777774 346778889
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+|.|.++++ ...|+.++.|.+.+++...++.-|...|..++-+|..+.|++-++||.+++|.
T Consensus 445 lSpkGewiYc--igED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYC--IGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEE--EccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999 56899999999999999999999999999999999999999999999999995
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.2e-29 Score=235.11 Aligned_cols=279 Identities=23% Similarity=0.342 Sum_probs=238.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|..++|+|. .=+|++..-.|.||+..+....+.+. ...+.|.++.|-.||++||+|...|.|+|||+.+...++.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 34778999985 46788888899999999888777554 5678999999999999999999999999999777778889
Q ss_pred ecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 247 ~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+|+.+|..+.| ++..|++|+.|+.+++||+.. ......+.+|+..|.|.+|+| ++..+++|+.||.|++||++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999998 468999999999999999984 344668999999999999999 56699999999999999999
Q ss_pred CC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEec
Q 011916 323 SQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 323 ~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.. ..+..+ .|..+|..+.+-|.|..++.+| ...+++||+.+|. .+... .|...|+|+.+..++..|++ |+
T Consensus 185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS--~s 257 (487)
T KOG0310|consen 185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS--GS 257 (487)
T ss_pred cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee--cc
Confidence 87 445554 5999999999999998555543 5889999998654 44444 38889999999999999999 88
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
-|+.+++||+.+.+.+..+. -.++|.+++.+||++.++.|-.||.+.+=+....++.
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 99999999999988888886 6789999999999999999999999877755444433
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.3e-28 Score=264.32 Aligned_cols=260 Identities=16% Similarity=0.317 Sum_probs=214.3
Q ss_pred CCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----e----eeEEecCCCCce
Q 011916 187 GTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----K----RVRTFGGHQTRA 254 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~----~~~~~~~h~~~v 254 (475)
+|.+++|+............ .|.+.|++++|+|+|++||+|+.||.|+||+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56678888877665444332 47889999999999999999999999999997542 1 122333 34678
Q ss_pred EEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 255 GVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 255 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
.+++|+ +.+|++++.||+|++||+. .+..+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 899995 5799999999999999998 5677788899999999999997 7899999999999999999999888887
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
..+ ..|.++.|++....++++|+ .|+.|++||++++. .+..+ .|...|..+.|. ++.+|++ ++.|+.|++||
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs--~s~D~~ikiWd 688 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS--SSTDNTLKLWD 688 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE--EECCCEEEEEe
Confidence 654 67999999654444666665 89999999998765 34343 567789999997 6778887 77899999999
Q ss_pred CCC------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 409 YPS------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 409 ~~~------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+.. ...+..+.+|...+..++|++++.+|++|+.|+.|++|+....
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 974 3567889999999999999999999999999999999997644
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=222.10 Aligned_cols=282 Identities=26% Similarity=0.442 Sum_probs=222.1
Q ss_pred cccccCCCCCCCCCCCCC--------------CccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecC
Q 011916 112 MLRFKTDHSSGPNSPYSP--------------SILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWS 177 (475)
Q Consensus 112 ~~~~~~~~~~~~~~~~s~--------------~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws 177 (475)
|+.|+++.+++++..||| ++.|+++++..+...++ .+-+...+.-.--+..++|+
T Consensus 1 m~~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-----------gi~e~~s~d~~D~LfdV~Ws 69 (311)
T KOG0277|consen 1 MQTHTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-----------GIQECQSYDTEDGLFDVAWS 69 (311)
T ss_pred CcceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCC-----------CeEEEEeeecccceeEeeec
Confidence 567888888888888887 44555555444333111 11111111111124459999
Q ss_pred CC---CEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC
Q 011916 178 SQ---NVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 178 ~~---~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 252 (475)
+. .+++++.||+++|||..-.. .+..+. +|...|.++.|++ +++.+++++.||+|++|+....+.+.++.+|..
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc
Confidence 74 47788889999999965433 333333 8999999999999 667888999999999999999999999999999
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cee
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ-QPT 327 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~-~~~ 327 (475)
.|....|+ ++++++++.|+++++||++..++.+. +..|..+|.++.|+. +.+.|++|+.|+.|++||+++. .++
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 99999996 58999999999999999998777665 889999999999998 7789999999999999999965 468
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
..+.+|.-+|+.++|+|....++++++ .|-+++|||...+. .+...+ |..-++.+.|++.....++. ..-|+.++
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs-~gWDe~l~ 304 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS-TGWDELLY 304 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-ccccccee
Confidence 888999999999999999999999987 99999999987544 444444 44568999999865555544 44799999
Q ss_pred EEEC
Q 011916 406 VWKY 409 (475)
Q Consensus 406 iwd~ 409 (475)
||+-
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9983
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=211.70 Aligned_cols=237 Identities=25% Similarity=0.439 Sum_probs=202.5
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECC
Q 011916 207 GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ---CKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 207 ~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~---~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~ 279 (475)
+|.+.+..++|+|- |..||+|+.|..|+||+... -.+...+. +|+..|..++| +|++|++++.|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 78889999999997 89999999999999999874 34444443 79999999999 57999999999999999754
Q ss_pred C-CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 280 V-SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 280 ~-~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
. ..+++..+.+|..+|.+++|+++|++||+++.|..|.||.+..+ +++..+..|...|+.+.|+|... ||++++
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S- 169 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS- 169 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec-
Confidence 2 23678899999999999999999999999999999999999844 45678889999999999999877 777765
Q ss_pred CCCCeEEEEECC---CCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEE
Q 011916 356 TADRCIRFWNTS---NGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLAT 430 (475)
Q Consensus 356 s~d~~I~iwd~~---~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~ 430 (475)
.|++|++|.-. ..+++.+++ +...|.+++|++.|..|++ ++.|+.++||.+.+ .+. .|...++.+.|
T Consensus 170 -YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 170 -YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--CSDDGTVSIWRLYT-----DLSGMHSRALYDVPW 241 (312)
T ss_pred -cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--ecCCcceEeeeecc-----CcchhcccceEeeee
Confidence 99999999866 346777775 4568999999999999999 88999999998652 222 37788999999
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
. ...|+++++|+.|+++.-....
T Consensus 242 ~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 242 D--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred c--ccceEeccCCCEEEEEEecCCC
Confidence 7 4589999999999999887543
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=233.89 Aligned_cols=287 Identities=17% Similarity=0.276 Sum_probs=239.9
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~ 226 (475)
-.+|.....++++++ .-++.+.|-++ .+.++|.|..|.+|+...++....-.+ +..+.|+++.|.++++++++
T Consensus 161 ~~lpS~~~~~ld~h~----gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHE----GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred cccchhhhhhhhccc----cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe
Confidence 445666666777653 44677899875 677888899999999988873332222 66788999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
++.|+.+++|++...+...++.+|+..|+++.|. ...+++|+.|.+|++||+.. ..+..... ....+..|..+ .
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec--c
Confidence 9999999999999999999999999999999993 34499999999999999983 44433332 23345555554 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCC
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGS 379 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~ 379 (475)
..+++|..|++|++||.+...+......+. .|+++..++++..+++++ .|.++.+.|+++.+....+. ..+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecccccccc
Confidence 578999999999999999999988887665 999999999999998874 79999999999998877763 456
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..+.+.|||++.|+++ |+.||.|+||++.+++....+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 389 DwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 7899999999999999 99999999999999998888876444 599999999999999999999999994
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=218.14 Aligned_cols=247 Identities=20% Similarity=0.365 Sum_probs=214.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDG-TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+|.+.|..+.|+|+|.+||+|+.|..|.+|++ ...+....+++|.+.|..+.| +++.|++++.|++++.||++ .++
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~ 123 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGK 123 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cce
Confidence 88999999999999999999999999999995 455677788899999999999 68999999999999999999 788
Q ss_pred cEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+.++++|..-|..+.-+.-|. ++.+|+.|+++++||+++...++++. ....++++.|...+..++..| -|+.|+
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg---Idn~ik 199 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG---IDNDIK 199 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc---ccCcee
Confidence 8999999999999998554444 67788899999999999988887764 467899999999998766643 899999
Q ss_pred EEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC----CceEEEecCCCc----ceEEEEECCC
Q 011916 363 FWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS----MAKVSTLTGHSL----RVLYLATSPD 433 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----~~~~~~l~~h~~----~V~~l~~spd 433 (475)
+||++.+..+..+. +...|+.+..+++|.++++ .+.|+.+++||++. ..++..+.+|.. ..+.++|+|+
T Consensus 200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls--nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS--NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeccccCcceEEeecccCceeeEEeccCCCcccc--ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999988885 6788999999999999999 88999999999864 344777777543 3567899999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+..+..|+.|..+++||.........+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred CCccccccccceEEEeecccccEEEEc
Confidence 999999999999999999886655443
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-27 Score=210.19 Aligned_cols=281 Identities=14% Similarity=0.247 Sum_probs=232.9
Q ss_pred CceeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+.-+.++- +-+++++.|....||-..+|+.+..+. +|.+.|.|+....+.++|++|+.|.++++||+++|+++.+
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence 3455566664 457888889999999999999999887 9999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEe--CCCEEEEEeC-----CCcEEEEECCCC------CccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 247 FGGHQTRAGVLAW--NSRILSSGSR-----DRNILQHDLRVS------SDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 247 ~~~h~~~v~~l~~--~~~~l~sgs~-----dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
++ -...|..+.| ++++++.... .+.|.++|++.. ..+..++..+...++.+-|.|-++.|++|..|
T Consensus 90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 87 3456777777 4676666543 467999999843 24567777888999999999999999999999
Q ss_pred CcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCe
Q 011916 314 NQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 314 g~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
|.|.+||+++++. +.....|...|+.|.++++..+++. |+.|.+-++||..+-++++++.+..+|.+.+++|....
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT---~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT---GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEe---cccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 9999999999854 4455679999999999999996665 34899999999999999999999999999999999888
Q ss_pred EEEEEecCCCeE------------EEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 393 LVSTHGYSQNQI------------MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 393 l~~~~g~~dg~I------------~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++...|.+-..| ++|++-..+.+..+++|-++|+.++|+|||+..++|++||.||+.-++..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 887322111122 22333333567788999999999999999999999999999999877643
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.2e-28 Score=213.51 Aligned_cols=255 Identities=16% Similarity=0.338 Sum_probs=220.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~ 281 (475)
+|...|.+|+|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+ ++.|++++.|++|++||++ .
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-S 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-c
Confidence 6778999999999999999999999999999988765554 45899999999995 6899999999999999999 5
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
++++.......+.| -+.|+|+|+++++++.|..|.+.|.++.+.+.... ....+..++|+.++..++.+.| -|+|
T Consensus 97 ~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G---lG~v 171 (313)
T KOG1407|consen 97 GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG---LGCV 171 (313)
T ss_pred CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC---CceE
Confidence 66666655444444 57899999999999999999999999887665543 4567888999988887777653 7999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
.|.....-+++..++ |.....++.|+|+|+++++ |+.|..+.+||+...-++..+..+.-+|..|.||.||++||+|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 999999989998885 7788999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEecCCCCCCCCcccCCccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALVKDTSLWSL 469 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~ 469 (475)
++|..|-|=++.++.+...+...++.+++
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPCEGPTFTV 278 (313)
T ss_pred CccceEEeEecccCCeEEEeeccCCceeE
Confidence 99999999999998888777666655443
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=213.87 Aligned_cols=266 Identities=19% Similarity=0.314 Sum_probs=222.0
Q ss_pred EEEEEcCCeEEEEECCCC----------cEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 181 VLAVGLGTCVYLWTASNS----------KVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~----------~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+++++....|+=+++.-. .+..++.. .|.+.|++++. ++.++|+|+.|-+|+|||+.+.+.+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 455555666665554321 12223322 68899999998 489999999999999999999999999999
Q ss_pred CCCceEEEEeCC----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 250 HQTRAGVLAWNS----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 250 h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
|.+.|+++.|.+ ..|++|+.||.|.+|+.. ....+..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.|+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 999999999954 389999999999999998 678899999999999999999999999999999999999999887
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.-..+.- ......|.|+|.|.++++.+ ...|-+|.+.+......+.....+.++.|- ++.+|++ |.+++.|.
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~v--G~d~~~i~ 232 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLV--GGDNEWIS 232 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEE--ecCCceEE
Confidence 6555442 22234499999999877764 688999999998888888777777777776 4556666 88999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+||..+..+...+.+|..+|-++.+ .|++.+|+|++.||.|+|||++...+.
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9999999999999999999999984 567899999999999999999877443
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=235.53 Aligned_cols=273 Identities=23% Similarity=0.395 Sum_probs=240.1
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.+.|+.-+++ .++|+|. ||.|+||+..++...-.+. +|...|+++.|...|..||+|+.|+.|.+||+-...-...
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeec-ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 56788888787 4566665 9999999999886665554 8999999999999999999999999999999988888888
Q ss_pred ecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 011916 247 FGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~- 323 (475)
+.||...|+..-| + .+++++.+.|+.|++||+. .+.+..+...|.++|.++++.+ +.+++++.|+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~-tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE-TQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecc-cceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence 9999999999988 3 5899999999999999999 7888899999999999999976 7899999999999999810
Q ss_pred -----------------------Cc-------------------------------------------------------
Q 011916 324 -----------------------QQ------------------------------------------------------- 325 (475)
Q Consensus 324 -----------------------~~------------------------------------------------------- 325 (475)
++
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ---------------------------------e------------------------------eEEEeccccceeEEEE
Q 011916 326 ---------------------------------P------------------------------TLRLTEHTAAVKAIAW 342 (475)
Q Consensus 326 ---------------------------------~------------------------------~~~~~~h~~~v~~l~~ 342 (475)
. ...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0 0123457788899999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
+.+.. ++++| ..+.|++|+..+.++++++..+ .+.+..|.|.++++++ |...|.+.+||+.+...+.++++|+
T Consensus 382 S~d~~-~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~--G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 382 SSDSI-LLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL--GTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred ecCce-eeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE--eccCCceEEEEeehhhhhhhhhccc
Confidence 98776 66665 4799999999999999999877 7888999999999999 9999999999999999999999999
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.|+.++.+||+..++|||.|.+|++|++.
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 999999999999999999999999999975
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-26 Score=207.60 Aligned_cols=277 Identities=17% Similarity=0.208 Sum_probs=228.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~ 243 (475)
.-.+++++|+.+ .+++++.|..|.|||..+++..+.+. .+.-.|..++|......++.++. |.+|+..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 446889999986 45666778899999999999988886 55667888999887777777776 88999999999999
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
++.|.||...|..|+.+ ++.+++++.|++|++||++. .++...+..... ..++|.|+|-++|++...+.|++||+
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999996 48999999999999999994 444444433333 34679999999999988889999999
Q ss_pred CCC--ceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC----CeeEEEEcCCCCe
Q 011916 322 HSQ--QPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS----QVCNLAWSKNVNE 392 (475)
Q Consensus 322 ~~~--~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~----~v~~l~~s~~~~~ 392 (475)
+.- .+..++.- -....+.|.|+|+|++++.+. ..+.+++.|.-+|..+..+.... -.....|+|++++
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 854 34444433 367789999999999999864 68999999999999888875322 2357889999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++ |..||.|.+|+++++.++..+.+ +.+++.++.|+|.-..++++ +..+.+|=.....
T Consensus 247 vl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 247 VLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999 99999999999999999999998 79999999999987777665 5678899765433
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-28 Score=244.52 Aligned_cols=249 Identities=20% Similarity=0.368 Sum_probs=222.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
....|..++|+|...+++++-.+|.|++||..-+.++..|..|.++|..++|++ .++++|+.|..|++|++. ..+++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceeh
Confidence 356788999999999999999999999999999999999999999999999974 799999999999999998 67888
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.++.+|-..|..+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|..|+|... ++++++ -|.+|++||
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaS--LDQTVRVWD 163 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSAS--LDQTVRVWD 163 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEec--ccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999877 677765 999999999
Q ss_pred CCCCc----------------------------eeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--
Q 011916 366 TSNGH----------------------------QLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-- 413 (475)
Q Consensus 366 ~~~~~----------------------------~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-- 413 (475)
+..-+ .++.+ .|...|.-++|+|.-..+++ |.+|.+|++|.+..-+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKAW 241 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEeccccce
Confidence 85311 01111 25567899999999999998 9999999999986543
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
.+-+..+|.+.|.++.|+|...++++.|+|++|+|||+......+...+
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 3556789999999999999999999999999999999998887777644
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=232.28 Aligned_cols=255 Identities=19% Similarity=0.333 Sum_probs=218.4
Q ss_pred CCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSY-ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~-la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
..+.|.+++|+|...+ +|+.+. -.++||+..+....+++......|.++.| +|.+|++|...|.|+|+|+. ....
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK-SRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-cHHH
Confidence 3578999999996543 444444 58999999998888888888899999999 69999999999999999965 5567
Q ss_pred EEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|++.|.+.+|+|-...++++|+ .||+|++
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg~vrl 180 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS--YDGKVRL 180 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC--CCceEEE
Confidence 788999999999999999 5557888899999999999998876688999999999999999999999987 9999999
Q ss_pred EECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 364 WNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 364 wd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
||++.. ..+.+++|+.+|..+.+-|.|..++++ ..+.|++||+-++.+ +..+..|...|+||.+..++..|++++
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA---gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASA---GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEc---CCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 999987 888999999999999999999999985 347899999986554 455555999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCcccCCccccc
Q 011916 442 GDETLRFWNVFPSLKAPALVKDTSLWSL 469 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~~~~~~v~s~ 469 (475)
-|+.|++||+..-+......-.+++.|+
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWKYPGPVLSI 285 (487)
T ss_pred cccceEEEEccceEEEEeeecccceeeE
Confidence 9999999997766655554445554443
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.2e-29 Score=236.08 Aligned_cols=249 Identities=21% Similarity=0.350 Sum_probs=217.3
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+|...|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+ |..+++++.|+.|++||++ .+
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG 290 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TG 290 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-cc
Confidence 8999999999999 899999999999999999876 89999999999999999995 7899999999999999999 56
Q ss_pred ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+...+.. ...+.++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.++.+. .|+.+
T Consensus 291 ~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~ 366 (503)
T KOG0282|consen 291 QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSV 366 (503)
T ss_pred eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccE
Confidence 66666643 4568999999988 8999999999999999999999999999999999999999999888865 79999
Q ss_pred EEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEecCCC--cceEEEEECCCC
Q 011916 362 RFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---AKVSTLTGHS--LRVLYLATSPDG 434 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~~h~--~~V~~l~~spdg 434 (475)
+||+.+.+..+..+. ......++..+|+++.+++ -+.++.|.+|.+... .+...+++|. +.-..+.|||||
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999988877664 3345778999999999999 789999999987543 3344567775 345778999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
.+|++|+.||.+.+||..+......+..
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhcccc
Confidence 9999999999999999998877666543
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-27 Score=219.21 Aligned_cols=240 Identities=26% Similarity=0.427 Sum_probs=208.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe---C--CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW---N--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~---~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|.+|... ++++++|++||.++||| ..|+...++.+|.++|.+++| + ...|++++.|.++++|.++..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 577888888876 78999999999999999 458899999999999999999 2 247999999999999998744
Q ss_pred Cc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------------CceeEEEecc
Q 011916 282 SD---YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-------------------------QQPTLRLTEH 333 (475)
Q Consensus 282 ~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-------------------------~~~~~~~~~h 333 (475)
.. .+....+|...|-++...++|..+++|+.|..|.||+..+ ..++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 32 2334459999999999999999999999999999999321 2356778899
Q ss_pred ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 334 TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 334 ~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
..+|.++.|++.+ .+.+++ .|.+|+.||+.++.++..+.+...+.++..+|..+.|++ |+.|..|++||.+++.
T Consensus 260 t~~Vs~V~w~d~~--v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 260 TEPVSSVVWSDAT--VIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeEEEcCCC--ceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeecCCCCCC
Confidence 9999999999843 556655 999999999999999999999999999999999999998 9999999999998753
Q ss_pred ---eEEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecCCCC
Q 011916 414 ---KVSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 414 ---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
...++.+|.+.|..+.|+|.. ..|++++.|+++++||+....
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 456788999999999999965 568899999999999999776
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=221.56 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=237.8
Q ss_pred eeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+..++-.+ +.++++|.|..+.++|...+++..++. +|...|+.+.++++...+++++.|-.|+||.+..........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc
Confidence 45566666 578888889999999999999999887 999999999999999999999999999999998888888888
Q ss_pred CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 249 GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 249 ~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.|..+|+.+.. +|.||++++.||+....|++.......... ...-.+++.+|+|||.+|.+|..|+.|+|||+.++.
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 99999999988 479999999999999999995444333322 233468999999999999999999999999999999
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
.+..|.+|.++|+.|+|+.+|.+|++.+ .|+.|++||++.-+...++... ..+.++.|...|.+|++ ++.+=+
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~l~ 455 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSDLQ 455 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--ecceeE
Confidence 9999999999999999999998776654 7999999999998888877544 46999999999999999 555555
Q ss_pred EEEEEC--CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 404 IMVWKY--PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 404 I~iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|++++- .++..+..+..|.+..+++.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 555553 367788888889999999999999999999999999998865
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=216.31 Aligned_cols=246 Identities=17% Similarity=0.286 Sum_probs=207.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.|.+.|.+++.+|+.+++|+|+.|..-.||++.++.....+.+|+..|+++.| ++.+|++|+.+|.|+||+.. .+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-tg~~ 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-TGGE 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-cCce
Confidence 79999999999999999999999999999999999999999999999999999 58999999999999999998 4555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+...-..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+.+.+|..++++=.|.|+|+.++. |..|++|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t---gy~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT---GYDDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE---EecCceEEEE
Confidence 5555556677889999999999999999999999999998888999999999999999999996666 3489999999
Q ss_pred ECCCCceeeeecC--CC---------------------Ce-----------------------------eEEE---EcCC
Q 011916 365 NTSNGHQLNSVDT--GS---------------------QV-----------------------------CNLA---WSKN 389 (475)
Q Consensus 365 d~~~~~~~~~~~~--~~---------------------~v-----------------------------~~l~---~s~~ 389 (475)
|..+++++..+.. +. .+ .++. |+..
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 9999988776641 00 00 0011 1111
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
-.. +++|+-||.|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||..++...-..
T Consensus 298 lpL--~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 298 LPL--AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred cch--hhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 112 2348899999999998877666554 888999999988 679999999999999999999887664
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.2e-27 Score=242.12 Aligned_cols=289 Identities=19% Similarity=0.332 Sum_probs=232.5
Q ss_pred CCCceeEEecCCC--CEEEEE--cCCeEEEEECCCC--------c--EEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVG--LGTCVYLWTASNS--------K--VTRLCDL-GPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~--~~~~V~lw~~~~~--------~--~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
++..+..++-+|+ .+.++| .|+.+.||+.+.- . ...++.. .|.+.|.|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 4455778999998 455555 5778889987521 1 1122222 7899999999999999999999999
Q ss_pred eEEEEECCC------------------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 232 QVQVWDGTQ------------------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 232 ~v~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
.|.||+... .+.+..+.+|...|..++|+ +.+|++++.|++|.||+.++ .+.+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeecc
Confidence 999998662 24667788999999999995 78999999999999999995 4899999999
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc------ccceeEEEECCCCCcEEEEec-CCCCCeEEEE
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH------TAAVKAIAWSPHQSSLLASGG-GTADRCIRFW 364 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iw 364 (475)
.+.|.++.|.|-|++||+-+.|++|+||++.+....+.+.++ ...+..+.|+|||++|++..+ ...-.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999999999999999999999999998877666666543 335789999999998776542 0023568888
Q ss_pred ECCCCcee-eeecCCCCeeEEEEcCC------C---------CeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEE
Q 011916 365 NTSNGHQL-NSVDTGSQVCNLAWSKN------V---------NELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLY 427 (475)
Q Consensus 365 d~~~~~~~-~~~~~~~~v~~l~~s~~------~---------~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~ 427 (475)
+-.+.+.- .-+.|..++.++.|+|. . .|.+++.|+.|+.|.||.....+++..... ....|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 88777744 44578899999999971 1 233555599999999999988888766543 4567999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|+|+|||..|+.++.||+|.+..+...+.
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99999999999999999999999987654
No 71
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.8e-26 Score=231.54 Aligned_cols=243 Identities=21% Similarity=0.294 Sum_probs=186.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eee---EEecCCCCceEEEEeC---CCEEEEEeCCCcEEE
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQC----------KRV---RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQ 275 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~----------~~~---~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~i 275 (475)
|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+ +++|++|+.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333344445554555555555555554332 211 2467899999999995 479999999999999
Q ss_pred EECCCCC------ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCc
Q 011916 276 HDLRVSS------DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 276 wd~~~~~------~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
||+...+ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.+++.+..+..|...|.+++|+|++.
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~- 181 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS- 181 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-
Confidence 9997432 3567789999999999999975 6999999999999999999999889999999999999999998
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC-C-CeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce-EEEecCC-C
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG-S-QVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMAK-VSTLTGH-S 422 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~-~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~-~~~l~~h-~ 422 (475)
++++++ .|+.|++||+++++.+..+... + .+..+.|.+++..++++.. ..|+.|++||+++... +.....+ .
T Consensus 182 lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 182 LLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred EEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 455544 8999999999999988877533 2 3457889999888876521 3479999999987653 3333333 3
Q ss_pred cceEEEEECCCCCEEEEEe-CCCCEEEEecCCCCCC
Q 011916 423 LRVLYLATSPDGQTIVTGA-GDETLRFWNVFPSLKA 457 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~~~~~ 457 (475)
..+....|++++.+|++++ .|+.|++||+..+...
T Consensus 260 ~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 4566678999999999887 5999999999876643
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.5e-28 Score=218.44 Aligned_cols=252 Identities=17% Similarity=0.273 Sum_probs=215.1
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec--------CCCCceEEEEeC--CCEEEEEeCCCc
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG--------GHQTRAGVLAWN--SRILSSGSRDRN 272 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--------~h~~~v~~l~~~--~~~l~sgs~dg~ 272 (475)
.+.++....+.|..|+|||+||++|+-||-|.+|+..+|+..+.++ .+...|.|++|+ ...|++|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 3445677888999999999999999999999999999988765443 577899999994 689999999999
Q ss_pred EEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 273 ILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
|++|.++ .+.+++.+. +|...|+++.|+.|+..+++++.|.+++|.-+++|+++..+++|...|+...|.++|.+++.
T Consensus 287 IKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 287 IKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEEe-cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 9999999 566666665 89999999999999999999999999999999999999999999999999999999998887
Q ss_pred EecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---CCcce
Q 011916 352 SGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---HSLRV 425 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V 425 (475)
+. .||+|++|+.++.+|+.++.. ..+|.++..-|....-+++ +...+.|+|.++. ++.+..+.. ..+..
T Consensus 366 aS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 AS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred ec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 65 699999999999999998863 4578888887765543333 5678899999974 666666653 33456
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.+.+.||.|.++++.++|+.++-|.+..+.....+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 67789999999999999999999999988876653
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-25 Score=203.51 Aligned_cols=247 Identities=17% Similarity=0.283 Sum_probs=208.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSD 283 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~ 283 (475)
....|.++.|+.+|.+|++++.|.+++|||..++++++++..+.-.+..++| ..+.++.++. |.+|+..++. ..+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCc
Confidence 4688999999999999999999999999999999999999988878888888 4566666665 8899999998 788
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.++-+.+|...|.+|+.+|-+..+++++.|++|++||++..++...+.. ..-..++|.|.|- ++|++. ....|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GL-ifA~~~--~~~~IkL 166 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGL-IFALAN--GSELIKL 166 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCc-EEEEec--CCCeEEE
Confidence 9999999999999999999889999999999999999998777655543 3334579999997 455543 3449999
Q ss_pred EECCCC--ceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce---EEEEECCCC
Q 011916 364 WNTSNG--HQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV---LYLATSPDG 434 (475)
Q Consensus 364 wd~~~~--~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V---~~l~~spdg 434 (475)
||++.. .+...+. .......+.|+|+|++++. +...+.+++.|.-+|..+.++.++...- ...+|+||+
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl--sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL--STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE--EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 999864 3334432 3467899999999999999 7789999999999999999988765443 678899999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
+++++|+.||+|.+|++.++.+......
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999998887665543
No 74
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=232.18 Aligned_cols=269 Identities=19% Similarity=0.296 Sum_probs=228.5
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEe------------------------------e------CCCCCcEEEEEEcCCCCE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLC------------------------------D------LGPGDSVCSVQWTREGSY 223 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~------------------------------~------~~~~~~V~~v~~spdg~~ 223 (475)
-+++++.|++|+||+++.+..-.++ + .+....+.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788899999999999763111110 0 123347899999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 224 ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
||+|..-|.++||++...+....++.|...|.|+.++ ..+|+++++|+.|+|+|+......++++.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 9999999999999999999999999999999999995 37899999999999999997788899999999999999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 299 KWSHDD--RELASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 299 ~~s~~~--~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
+|-..| ..++++|.|..|.+--.+.......+.. ....+..++..|..+++++.+ .|+.|+|||+.+|+.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEEEeccccce
Confidence 998877 6899999998876544332222222222 245689999999999666654 899999999999999
Q ss_pred eeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 372 LNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 372 ~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.+.++ +.+....+...|.|.|+++ .++|.++.++|+.++++++...||...|++|.|.+|.+.|++.+.||.|.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEE--eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 99985 4567889999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 011916 448 FWNVFP 453 (475)
Q Consensus 448 iW~~~~ 453 (475)
||.+..
T Consensus 709 vW~lp~ 714 (1080)
T KOG1408|consen 709 VWKLPL 714 (1080)
T ss_pred EEECch
Confidence 999865
No 75
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=228.89 Aligned_cols=244 Identities=12% Similarity=0.189 Sum_probs=186.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------eeEEecCCCCceEE
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCK--------RVRTFGGHQTRAGV 256 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~ 256 (475)
..+.|.+|+.........+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred ceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 35678999987766555554 89999999999996 7899999999999999997542 34467899999999
Q ss_pred EEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc
Q 011916 257 LAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH 333 (475)
Q Consensus 257 l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h 333 (475)
++|++ .+|++++.|++|++||++. +.....+. |...|.+++|+++|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99974 3568999999999999984 44444444 5678999999999999999999999999999999999999999
Q ss_pred ccceeEE-----EECCCCCcEEEEecC-CCCCeEEEEECCC-CceeeeecCCCC--eeEEEEcC-CCCeEEEEEecCCCe
Q 011916 334 TAAVKAI-----AWSPHQSSLLASGGG-TADRCIRFWNTSN-GHQLNSVDTGSQ--VCNLAWSK-NVNELVSTHGYSQNQ 403 (475)
Q Consensus 334 ~~~v~~l-----~~sp~~~~ll~sg~G-s~d~~I~iwd~~~-~~~~~~~~~~~~--v~~l~~s~-~~~~l~~~~g~~dg~ 403 (475)
.+.+... .|++++.+++++|.. ..++.|+|||+++ ++++..+..... +....|.+ ++.++++ |..|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~t 286 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGN 286 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCe
Confidence 8765433 345888877777641 1125899999995 566666544433 22234444 4666666 889999
Q ss_pred EEEEECCCCceEEEecC--CCcceEEEEECCCCC
Q 011916 404 IMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQ 435 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~ 435 (475)
|++|++..+. +..+.. +..++.+++|.|+..
T Consensus 287 Ir~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 9999997663 333322 567788999999743
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=8.6e-26 Score=199.01 Aligned_cols=275 Identities=15% Similarity=0.244 Sum_probs=230.6
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..++|+.+ .++.++.|+.+.+|+++.......... +|.+.|-.++|.| ....|++++.|.+|++||+..++++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 4677999875 577777799999999998865444333 7888999999998 56799999999999999999999999
Q ss_pred EecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 246 TFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 246 ~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
......+.+....+ +|.+++.++.|..|...|.+. .+.. .-.....++.-+.|+.++.+++....-|+|.|......
T Consensus 102 ~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~-~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 102 RIETKGENINITWSPDGEYIAVGNKDDRITFIDART-YKIV-NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecc-ccee-ehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence 88766665554433 689999999999999999983 3332 23334567888999987777776666799999999999
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
++++.+..|.....+|.|+|+|+++++ |+.|-.+.+||+..--|++.+. +.-+|..+.|+.+|++|++ +++|..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~---GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--aSEDh~ 254 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFAT---GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--ASEDHF 254 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEee---ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec--cCccce
Confidence 999999999999999999999996655 4599999999999998988884 6789999999999999999 899999
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---------CCEEEEecC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---------ETLRFWNVF 452 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---------g~I~iW~~~ 452 (475)
|-|=++++|..+.+++ ++++...++|+|...+||-++.| |+|++|-+.
T Consensus 255 IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 255 IDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999987 78899999999999999987765 566666543
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=218.73 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=225.8
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcE----EEEeeCCCCCcEEEEEEcCCCCE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKV----TRLCDLGPGDSVCSVQWTREGSY 223 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~----~~~~~~~~~~~V~~v~~spdg~~ 223 (475)
..||..-+-.|. ...--|.++...|. .+++++.|..|++||+..-.. .+.+.-.....|.+++|++.|..
T Consensus 153 ~~IP~shEi~l~----hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 153 KLIPGSHEIQLK----HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred hcCCccceEecc----CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 345554443333 13344677777764 799999999999999976422 22222244678999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE------------ecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 224 ISVGTNLGQVQVWDGTQCKRVRT------------FGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
|++.+.....+|+|-...+.+.. -+||...++|.+|++ ..+++++.||+++|||+.......+.+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 99988889999999655444332 248999999999965 789999999999999998655444433
Q ss_pred c-----CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeE-EEecccc--ceeEEEECCCCCcEEEEecCCCC
Q 011916 289 A-----GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ--PTL-RLTEHTA--AVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 289 ~-----~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~--~~~-~~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
. +..-.++.++|++||++||+|..||.|.+|+..... +.. .-..|.. .|++|+|+++|++|+.=| .|
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D 385 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FD 385 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CC
Confidence 3 233468999999999999999999999999986432 222 2345776 899999999999777754 79
Q ss_pred CeEEEEECCCCc-eeeee---cCCCCeeEEEEcCCCCeEEEEEec------CCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 359 RCIRFWNTSNGH-QLNSV---DTGSQVCNLAWSKNVNELVSTHGY------SQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 359 ~~I~iwd~~~~~-~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
+++++||++..+ ++... .....-+.++|+|+.+.|++ |. ..|.+++||..+.+.+..+.-.+..|..+
T Consensus 386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T--GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT--GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe--cccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 999999998754 33332 34456788999999999998 54 35689999999999999998888899999
Q ss_pred EECCCCCEEEEEeCCCCEEEEe
Q 011916 429 ATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|+|.=+.|..|+.||+++++=
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eecchhhheeeecCCCceEEEE
Confidence 9999988899999999998874
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=225.83 Aligned_cols=299 Identities=18% Similarity=0.251 Sum_probs=243.3
Q ss_pred CCCCceeEEecCC---CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 166 QDDFYLNLVDWSS---QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 166 ~~d~~v~~l~ws~---~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+++ +.++.--+ +.++.++.+|.+.|||+.+++.+..+. ++...|+++.=+|-=..+|+|..+|+|.|+++..++
T Consensus 158 ~~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 158 EGDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred cCCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCc
Confidence 3444 55555333 368888899999999999999999887 777999999999988899999999999999999999
Q ss_pred eeEEecCCCCceEEEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccC--------------------------
Q 011916 243 RVRTFGGHQTRAGVLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKS-------------------------- 293 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-------------------------- 293 (475)
.+.+|+...++|+.++| +| .++++|+..|.+.+||++...........|.+
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999866799999999 46 57888888899999999733222111222322
Q ss_pred --------------------------------------------------------------------------------
Q 011916 294 -------------------------------------------------------------------------------- 293 (475)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (475)
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence
Q ss_pred ------------------------------------------------------CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 294 ------------------------------------------------------EVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 294 ------------------------------------------------------~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
.+++++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 34455555566666666666666666
Q ss_pred ECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 320 NQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 320 d~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++++|-....+ ..|..+|++++...-++.++++| .+|.+++||..+...+..+..+..+..+..+.....+++
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~- 551 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI- 551 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh-
Confidence 66666555555 36899999999988887555543 799999999999999999999999999999999888888
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
+.++-.|.++|..+.+.+..+.+|.++|++++|||||++|++++.|++|++||+.++.....+.-+..+.+++.
T Consensus 552 -~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 552 -ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred -hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 77899999999999999999999999999999999999999999999999999999988777665555555443
No 79
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3.6e-26 Score=217.24 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=234.0
Q ss_pred CCCCCCceeEEecCCC-CEEEEEcCCeEEEEECCCCc---EEEEee-CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---VTRLCD-LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---~~~~~~-~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
.+.+.-.|+++..|.. .-+..|..|+|+|||+.... .+..++ +..+..|.++.+.|||+.|++|+.-.+|.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4455666888888764 67777888999999997532 122222 245689999999999999999999999999998
Q ss_pred CCCee--eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC
Q 011916 239 TQCKR--VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN 314 (475)
Q Consensus 239 ~~~~~--~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg 314 (475)
..... ...+......+.+++. +.+..+++..||.|.|||++ ....+..+.+|...+.||.+++||..|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76533 2333333345555655 45899999999999999999 7888999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
+|+.||+++++.+++. .....|.++..+|.+.++++ |.+.+.+.+..+...+......+.+.|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccCceee
Confidence 9999999998876654 35688999999999998777 5689999999988777777778899999999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ -..|+.+..|..+-+..+...+ ....|+++.+|.|.++|+||+.|..-.||.+
T Consensus 650 S--tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 S--TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred e--cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9 5589999999999999988876 4568999999999999999999999998876
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=215.60 Aligned_cols=250 Identities=16% Similarity=0.274 Sum_probs=212.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|.-+.||++|+|||+++.|.+..||++... +..+++.+|..+|..+.|+ .++|++|+.|..+.+||+.++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 78999999999999999999999999999987543 4577888999999999995 589999999999999999844
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.....--.+|...+.+++|.|||..+++|+.|+.+..||+.... +....+ ....|.+++.++||+++++++ .|..
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~ 377 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKK 377 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe---cccc
Confidence 33322233456789999999999999999999999999997543 333333 235689999999999999987 6999
Q ss_pred EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc--eEEEEECC-CCCEE
Q 011916 361 IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR--VLYLATSP-DGQTI 437 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~--V~~l~~sp-dg~~l 437 (475)
|++++..+......+....+|+++.++.+++++++ .-.+..|++||+.....+..+.||... |..-+|.- +..++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 99999998888888888999999999999999998 778999999999998889999998755 44455654 55899
Q ss_pred EEEeCCCCEEEEecCCCCCCCCccc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
++|++|+.|+||+-..+.....+..
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecC
Confidence 9999999999999999887766543
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.5e-24 Score=209.40 Aligned_cols=281 Identities=12% Similarity=0.140 Sum_probs=213.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
+++.+.++.|++||..+++....+.. ...+.+++|+|+|+.+ +++..++.|++||..+++.+..+..+.. +..++|
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~--~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPV--GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEEC--CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 34556699999999999988777753 3446789999999876 5667789999999999988877765443 456677
Q ss_pred C--CCEEEE-EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEecccc
Q 011916 260 N--SRILSS-GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN-QLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 260 ~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg-~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+ ++.+++ ++.++.|.+||++. ...+..+. +...+.+++|+|++++++++..++ .+.+||..+++.+..+. ...
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 4 565654 45689999999984 44444444 234578899999999999988765 56788998877655443 234
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+..++|+|++..+++++. .++.|++||+.+++.+..+... .....++|+|+++.++++ ...++.|.+|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-~~~~~~i~v~ 234 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-LGPANRVAVV 234 (300)
T ss_pred CccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE-cCCCCeEEEE
Confidence 5678999999998877653 6899999999999887765421 124568899999997764 3356789999
Q ss_pred ECCCCceEEEecCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 408 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
|..+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+..+.....+..+...|++..
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 999888776553 44578999999999999886 4589999999999888777666666777654
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.9e-26 Score=215.52 Aligned_cols=247 Identities=24% Similarity=0.482 Sum_probs=207.1
Q ss_pred eeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe----------eeEEecCCCCceEEEEeC---CCEEEEEeC
Q 011916 204 CDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCK----------RVRTFGGHQTRAGVLAWN---SRILSSGSR 269 (475)
Q Consensus 204 ~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~l~~~---~~~l~sgs~ 269 (475)
..+.|.+.|+.+..-|+. ..+|+++..+.|.|||..+.. .-..+.+|...-..|+|+ ...|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 344789999999999955 677788889999999976432 222677999988899996 468999999
Q ss_pred CCcEEEEECCCCCc------cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEeccccceeEE
Q 011916 270 DRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH--SQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 270 dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l 340 (475)
|++|.+||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||++ +.++......|.+.|.++
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 99999999975443 3566889999999999999 66789999999999999999 566677788899999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011916 341 AWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------ 412 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 412 (475)
+|+|.+.+++|+|+ .|++|.+||+++-. ++..+ .|...|.++.|+|+...+++++| .|+.+.|||+..-
T Consensus 279 ~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 279 AFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEeccccccccCh
Confidence 99999999999977 99999999999753 45555 57789999999999888887755 8999999998532
Q ss_pred --------ceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCC
Q 011916 413 --------AKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 413 --------~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~ 453 (475)
+.+..--||+..|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 33566678999999999999765 577889999999999873
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=206.99 Aligned_cols=281 Identities=16% Similarity=0.303 Sum_probs=227.9
Q ss_pred CCCceeEEecCCC-CEEEEE-cCCeEEEEECCC------------C------cEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASN------------S------KVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~------------~------~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+...+.+-+|+++ .++|.| .|-.|+|.|++. + -+++.+ ..|.+.|+++.|+|....|++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEe
Confidence 3445788899998 455544 488999999871 1 122222 278899999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE--ecCccCCEEEEEE
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKW 300 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~ 300 (475)
|+.|++|++||+......+.++ .....|.+++|+ |.+|+.|....++++||+.+.+..+.. -..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 9999999999987654444433 345688999995 699999999999999999854433322 3468999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEec-cc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
++.+++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+|++++.+| .|..+++|.+.+++++..+...
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEEecC
Confidence 99999999999999999999999999887764 43 5799999999999999887 7999999999999999988532
Q ss_pred C------CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 379 S------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 379 ~------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ --+...|+....+++.. ....+.++-||.++...+..+. +|++.+..+.-||.+.-++||+.|-.+|+|--
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~p-DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFP-DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CcccchhhhhhhhhcCccceEEcc-ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 1 23556788888888774 3456789999999988776654 79999999999999999999999999999964
Q ss_pred C
Q 011916 452 F 452 (475)
Q Consensus 452 ~ 452 (475)
.
T Consensus 426 r 426 (430)
T KOG0640|consen 426 R 426 (430)
T ss_pred c
Confidence 3
No 84
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.4e-25 Score=224.02 Aligned_cols=224 Identities=18% Similarity=0.334 Sum_probs=176.8
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCc-------cEEEecCccCCEE
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSD-------YICKLAGHKSEVC 296 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 296 (475)
|+.+|.|++|+......+..+.+|...|.+++|+ +++|++|+.|++|++||+..... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 5667899999988888888999999999999996 46999999999999999974322 3446788999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|..|++ ++ .|+.|+|||+++++.+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat-~s--~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG-TC--VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE-Ee--cCCEEEEEECCCCcEEEEE
Confidence 9999998875 5789999999999999998777765 6678999999999995544 43 7999999999999998877
Q ss_pred c-CCCCee-----EEEEcCCCCeEEEEEecCC---CeEEEEECCC-CceEEEec--CCCcceEEEEECCCCCEEEEEeCC
Q 011916 376 D-TGSQVC-----NLAWSKNVNELVSTHGYSQ---NQIMVWKYPS-MAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 376 ~-~~~~v~-----~l~~s~~~~~l~~~~g~~d---g~I~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
. |.+.+. ...|++++.+|+++ |.++ +.|+|||+++ .+.+..+. .+.+.+......++|.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 5 333332 23456888888885 4333 4799999985 44554443 333444444445679999999999
Q ss_pred CCEEEEecCCCC
Q 011916 444 ETLRFWNVFPSL 455 (475)
Q Consensus 444 g~I~iW~~~~~~ 455 (475)
++|++|++..+.
T Consensus 285 ~tIr~~e~~~~~ 296 (568)
T PTZ00420 285 GNCRYYQHSLGS 296 (568)
T ss_pred CeEEEEEccCCc
Confidence 999999997653
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.2e-24 Score=184.54 Aligned_cols=281 Identities=20% Similarity=0.312 Sum_probs=223.6
Q ss_pred CCCCCceeEEecCCC-CEEEEEcC-CeEEEEECC------CCc------EEEEe--eCCCCCcEEEEEEcCCCCEEEEEe
Q 011916 165 LQDDFYLNLVDWSSQ-NVLAVGLG-TCVYLWTAS------NSK------VTRLC--DLGPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-~~la~~~~-~~V~lw~~~------~~~------~~~~~--~~~~~~~V~~v~~spdg~~la~g~ 228 (475)
+.+..-+.+++|.|. .+.|+|.+ .+++|-... .+. ...++ ...|.+.|.|.+|+|+|.+||+|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 345667889999996 78888875 456554322 111 01111 226789999999999999999999
Q ss_pred CCCeEEEEECCCC--ee---eEEecCCCCceEEEEe-C-----CCEEEEEe-CCCcEEEEECCCCCccEEEecCccCCEE
Q 011916 229 NLGQVQVWDGTQC--KR---VRTFGGHQTRAGVLAW-N-----SRILSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVC 296 (475)
Q Consensus 229 ~dg~v~iwd~~~~--~~---~~~~~~h~~~v~~l~~-~-----~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 296 (475)
+|.+|++.-+... .. -.++..|.+.|..++| + +.+|++++ .|..|++-|.. .++....+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCcceeecCCcccEE
Confidence 9999999765432 22 2356789999999999 2 35677665 56778888877 6778889999999998
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
++- +-++-.+++|+.|.+|++||++-..++.++.. ...+|.+++..|.|+ |+++|. .|....+||++.+
T Consensus 188 aly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 ALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCC
Confidence 873 44788999999999999999998887776643 236799999999999 777755 9999999999999
Q ss_pred ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 370 HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 370 ~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
+.++.+ .+...|.++.|+|...++++ ++-|..|++-|+... -.+..+..|...+..+.|+|..-.+++.+.|.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999988 47788999999999999999 888999999998642 22344456999999999999998999999999
Q ss_pred CEEEEecC
Q 011916 445 TLRFWNVF 452 (475)
Q Consensus 445 ~I~iW~~~ 452 (475)
++.+|-+.
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999864
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=8.8e-26 Score=230.02 Aligned_cols=248 Identities=25% Similarity=0.367 Sum_probs=220.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|.++++. +.+|++|+.|.++++||.. .+.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcE
Confidence 45678888887 66899999999999999999999988 99999999999997 8999999999999999987 7899
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+.+|...|.++... +..+++|+.|.+|++|++.++..+..+.+|.++|.++..+ +. ++++|+ .|+.|++|
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs--~d~~v~VW 356 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGS--YDGTVKVW 356 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEe--cCceEEEE
Confidence 99999999999998874 5588889999999999999999999999999999999998 44 666654 99999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
|+.+++++..+. |...|.++.+... ..++. |..|+.|++||+.+. +++.++.+|...|..+.+ .+++|++++.
T Consensus 357 ~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S--gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 357 DPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS--GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred EhhhceeeeeecCCcceEEEEEecCc-ceEEe--eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc
Confidence 999999999985 6788999988776 77777 889999999999999 999999999999977766 6889999999
Q ss_pred CCCEEEEecCCCCCCCCcccC--Ccccccc
Q 011916 443 DETLRFWNVFPSLKAPALVKD--TSLWSLG 470 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~~~~~--~~v~s~~ 470 (475)
|++|++||...+....++... ..++.+.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALA 461 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEee
Confidence 999999999999988876652 4454443
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.3e-26 Score=232.93 Aligned_cols=246 Identities=24% Similarity=0.406 Sum_probs=211.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCC
Q 011916 208 PGDSVCSVQWTREGSYISVGT--NLGQVQVWDGTQ------------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDR 271 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~--~dg~v~iwd~~~------------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg 271 (475)
++..|.+|..+|||..+|+|+ .||.+.||+.+. .+.+.++..|.+.|.|+.| ||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998542 3456677899999999999 689999999999
Q ss_pred cEEEEECCC------CC-----------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 272 NILQHDLRV------SS-----------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 272 ~I~iwd~~~------~~-----------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
.|.||+... .+ +.+..+.+|...|..++|+|++.+|++++.|++|.||+.++.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999872 11 2567789999999999999999999999999999999999999999999999
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeeEEEEcCCCCeEEEEEecCCC--eEE
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-------GSQVCNLAWSKNVNELVSTHGYSQN--QIM 405 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~~g~~dg--~I~ 405 (475)
+.|..+.|.|-|+++++-+ .|++|+||++.+..+.+.+.. ..-...+.|+|||.+|++.++...+ .+.
T Consensus 172 s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 9999999999999766654 799999999888777777642 2458899999999999997665443 688
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCC-----CC------------EEEEEeCCCCEEEEecCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPD-----GQ------------TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~------------~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|.+-.+.+.-..+.||.+++.++.|+|. .. .+|+|+.|++|.||.......
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 9998888888999999999999999982 11 678899999999999854443
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=202.68 Aligned_cols=283 Identities=17% Similarity=0.290 Sum_probs=233.4
Q ss_pred CCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-----
Q 011916 164 SLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG----- 238 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~----- 238 (475)
++.|.++-.+.+-...-+-+++.|.+-.||.++++.+...+. +|.+.|.+|+|++.+.++++++.|++..||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 344444433333222234445569999999999999988886 99999999999999999999999999999961
Q ss_pred -CC----------------------------------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC
Q 011916 239 -TQ----------------------------------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 239 -~~----------------------------------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.. ..++..+.+|.+.|.+..| .++.+++++.|.+..+||++ .
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-t 303 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-T 303 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec-c
Confidence 11 0133456789999999999 57999999999999999999 7
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
+..+..+.+|..+.+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+.+ +++| +.|.+
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSg--SDDrT 379 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSG--SDDRT 379 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeec--CCCce
Confidence 8899999999999999999999999999999999999999843 34678999999999999998875 4454 49999
Q ss_pred EEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-----ecCCCcceEEEEECCCC
Q 011916 361 IRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-----LTGHSLRVLYLATSPDG 434 (475)
Q Consensus 361 I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-----l~~h~~~V~~l~~spdg 434 (475)
|++||+++. .++.++...+++..++.+..+..|+. --++.+|++||+... .+.. -++|...|.|++|..+.
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCceEEe--ccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccC
Confidence 999999875 47888999999999999999989888 667889999999644 3333 35799999999998653
Q ss_pred --CEEEEEeCCCCEEEEecCCCC
Q 011916 435 --QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 435 --~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.-|++++.|..+.=|++....
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 358899999999999987543
No 89
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.7e-27 Score=214.94 Aligned_cols=244 Identities=19% Similarity=0.352 Sum_probs=218.6
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|+++...+++++.|++|+.|.+.. ...
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~--~p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG--PPL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC--Ccc
Confidence 889999999999976 78999999999999999999999999999999999999889999999999999999874 344
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+. ....+.+|.-+..+..+|++|. .|.|||.....++..+......|.++.|+|-...++++++ .|+.|.+||
T Consensus 142 ~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIVLYD 216 (433)
T ss_pred eeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--cCCceEEEe
Confidence 4444 3456788888778889999986 5999999999999999988899999999999999999987 899999999
Q ss_pred CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
++++.+++.+-....-..++|+|.+-.+++ +.+|..++.||++.. .++....+|...|.++.|||.|+-+++|+.|.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 999999999988888899999996666666 889999999999886 45677789999999999999999999999999
Q ss_pred CEEEEecCCCCCCCC
Q 011916 445 TLRFWNVFPSLKAPA 459 (475)
Q Consensus 445 ~I~iW~~~~~~~~~~ 459 (475)
+|+||.+..+.....
T Consensus 295 sIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDI 309 (433)
T ss_pred eEEEeecCCCcchhh
Confidence 999999998776543
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=208.95 Aligned_cols=280 Identities=22% Similarity=0.360 Sum_probs=231.3
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEE-EEee----------------CCCCCcEEEEEEcCCCCEEEEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVT-RLCD----------------LGPGDSVCSVQWTREGSYISVG 227 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~-~~~~----------------~~~~~~V~~v~~spdg~~la~g 227 (475)
+...+.++..+++ .++.++.++.|.-|++.+++.. ..+. ..|...+.+++.++||+|||+|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 3455778888887 7888899999999999988743 1111 1466789999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 228 TNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
+.|..|+||+..+.+.++.+.+|.+.|.+++| ..+.|++++.|+.|++|++. ....+.++.+|...|.+|....-++
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~v~~IdaL~reR 299 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVETLYGHQDGVLGIDALSRER 299 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHHHhCCccceeeechhcccc
Confidence 99999999999999999999999999999999 35899999999999999998 6677888999999999999988888
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--C------
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--T------ 377 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~------ 377 (475)
.+-+|+.|.++++|++... ....+.+|.+.+.|++|-.+.+ +++ |+.+|.|.+|++.+.+++.... |
T Consensus 300 ~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H--fvs--GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH--FVS--GSDNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc--eee--ccCCceEEEeeecccCceeEeeccccccCCc
Confidence 8888889999999999543 3457788999999999988776 444 4499999999999988877652 1
Q ss_pred -----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEE
Q 011916 378 -----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLR 447 (475)
Q Consensus 378 -----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~ 447 (475)
...|++++..|....+++ |+.+|.|++|.+..+ .++..+. -.+.|+.|+|+++|+.|++|. ....+-
T Consensus 375 ~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred cccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 127899999999999998 999999999999776 4455554 678899999999999776664 444455
Q ss_pred EEecCCCC
Q 011916 448 FWNVFPSL 455 (475)
Q Consensus 448 iW~~~~~~ 455 (475)
-|-....-
T Consensus 452 RW~~~k~~ 459 (479)
T KOG0299|consen 452 RWWCLKSG 459 (479)
T ss_pred eeeEeecc
Confidence 56554433
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.6e-25 Score=198.18 Aligned_cols=262 Identities=17% Similarity=0.254 Sum_probs=206.7
Q ss_pred ceeEEecCCC--CEE-EEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ--NVL-AVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~--~~l-a~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.|.+|+|||. +++ |++.|++|++|+++. +.........|.++|.+++|+.||..+++|+.|+.+++||+.++ ++.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~ 107 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVS 107 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Cee
Confidence 3667999983 666 556699999999987 45554444478999999999999999999999999999999999 666
Q ss_pred EecCCCCceEEEEeC-C---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN-S---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~-~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+..|.++|.++.|- + ..|++|+.|++|+.||.| ....+.++. -...+.++.. ...+++++..+..|.+|++
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEc
Confidence 788899999999992 2 588999999999999999 444444443 2445666655 3447888899999999999
Q ss_pred CCCceeEEE--eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ec-C---------CCCeeEEEEc
Q 011916 322 HSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--VD-T---------GSQVCNLAWS 387 (475)
Q Consensus 322 ~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~~-~---------~~~v~~l~~s 387 (475)
+++...... ..-.-.+++|+..++.... +.| +.+|.+.+..+..+..... +. | -..|.+++|+
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alG--siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALG--SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCce-Eee--eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 876432211 1234568899999988866 444 4899999999887633222 21 1 1247889999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
|....|++ .++||.+.+||-....++.+.+.|..+|++..|+.+|.++|-+.
T Consensus 261 P~hgtlvT--aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 261 PVHGTLVT--AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cccceEEE--ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999998 56899999999999999999999999999999999999988653
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.7e-26 Score=209.64 Aligned_cols=276 Identities=17% Similarity=0.239 Sum_probs=217.8
Q ss_pred eeEEecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
|.|++=+|+ .+++++.||.|+|||+........+. .|.+.|..|++.. ..+++++.|.+|+.|.++. ..++++
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti 144 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI 144 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee
Confidence 455666665 46777789999999999998888887 7899999999986 6788889999999999775 355555
Q ss_pred cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 248 GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 248 ~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
-+ ...+..+.- -++.++++|. .|.|||.. ...++..+.--...|.++.|+| ....|++|+.|+.|.+||++.+
T Consensus 145 lg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 145 LG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ec-cccccccccccccccccccCc--eeeecccc-cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 43 233344443 3567788774 58999998 6677888888888899999999 4558888889999999999999
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.++..+.- .-.-+.|+|+|. .+.++++ ++|..++.||++.-+. +... +|.+.|.++.|+|.|+++++ |+-|.
T Consensus 221 ~Pl~KVi~-~mRTN~IswnPe-afnF~~a--~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs--gsyDk 294 (433)
T KOG0268|consen 221 SPLKKVIL-TMRTNTICWNPE-AFNFVAA--NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS--GSYDK 294 (433)
T ss_pred Cccceeee-eccccceecCcc-ccceeec--cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc--ccccc
Confidence 98876642 445678999994 4456664 4999999999987543 3332 57889999999999999999 88999
Q ss_pred eEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 403 QIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.|+||.+..+........ --..|.++.||.|.+++++|+.|+.|++|.-...++...+
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 999999987654333211 2245999999999999999999999999998877766543
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-25 Score=219.09 Aligned_cols=238 Identities=24% Similarity=0.413 Sum_probs=208.8
Q ss_pred CCceeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
..++.++.|+++ ..||+| .+|.|.|||..+.+.+..+...|...|-+++|. +..+.+|+.+|.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 578999999986 555555 589999999999988888775589999999998 6789999999999999998876655
Q ss_pred E-ecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEe--CCCcEEEE
Q 011916 246 T-FGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGG--NDNQLLVW 319 (475)
Q Consensus 246 ~-~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~--~Dg~I~iw 319 (475)
. +.+|...|..+.| ++.+|++|+.|+.+.|||.. .......+..|...|.+++|+| ...+||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 5 8899999999999 57999999999999999996 6677888999999999999999 677999975 68999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
|..+++.+..+. -.+.|..|.|++..+.|+++. |..++.|.||+..+.+.+..+ .|...|..++++|+|..+++ |
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t--~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT--G 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE--e
Confidence 999999887765 468899999999998777776 688999999999998877776 57788999999999999999 8
Q ss_pred cCCCeEEEEECCCC
Q 011916 399 YSQNQIMVWKYPSM 412 (475)
Q Consensus 399 ~~dg~I~iwd~~~~ 412 (475)
..|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 88999999998654
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=209.42 Aligned_cols=268 Identities=19% Similarity=0.289 Sum_probs=217.4
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRIL 264 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l 264 (475)
..+.+||+.+|.....+.-+....-.++..- .+.|++++.. ...|.+|.+...........-.+.|.+++-+ |.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 4699999999987666642211111111111 3356666654 4578999987766655444567789999873 6788
Q ss_pred EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEEecccc
Q 011916 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH---------SQQPTLRLTEHTA 335 (475)
Q Consensus 265 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~---------~~~~~~~~~~h~~ 335 (475)
+.|+..|.|++|.+. .+..+..+.+|-+.|+++.|+.||.+|++|+.||.|.+|++. +-++++.+..|.-
T Consensus 97 ~ag~i~g~lYlWels-sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 97 LAGTISGNLYLWELS-SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL 175 (476)
T ss_pred EeecccCcEEEEEec-cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence 888899999999998 778888889999999999999999999999999999999864 3467889999999
Q ss_pred ceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---
Q 011916 336 AVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--- 411 (475)
Q Consensus 336 ~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--- 411 (475)
+|+++...+.| ...+.+.+ .|.++++||+..|..+.++.....+.+++.+|.+..+++ |.++|.|.+.++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKLSG 251 (476)
T ss_pred eeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcCCc
Confidence 99999987763 22344443 899999999999999999999999999999999999999 99999999988743
Q ss_pred -------------CceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 412 -------------MAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 412 -------------~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+..+..+.||.+ .|+|++.+-||..|++|+.||.|+|||+...+...++.
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 234567788988 89999999999999999999999999999988777665
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=214.81 Aligned_cols=246 Identities=21% Similarity=0.345 Sum_probs=214.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.++ +..+++.+.|+.+++|++. ..
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~ 251 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SL 251 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-ch
Confidence 578899999999998899999999999999987766 677888889999999995 6899999999999999998 67
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
....++.+|+..|+++.|......+++|+.|.+|++||+....+..++. ....+.+|..++ ..+++|. .|++|+
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH--~DkkvR 325 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGH--FDKKVR 325 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEecc---eeeeecc--cccceE
Confidence 7888999999999999998877779999999999999999987766553 245566777662 2666655 999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC----CcceEEEEECCCCCEEE
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH----SLRVLYLATSPDGQTIV 438 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~ 438 (475)
+||+++..+...+..++.|+++..++++..|++ ...|..+.+.|+++.+....+... ....+.+.|||++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999999999999999999999999 678999999999999887777542 22378899999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+|+.||.|+||++++++....+.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred eccCCCcEEEEEccCceEEEEec
Confidence 99999999999999998876644
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=226.39 Aligned_cols=282 Identities=21% Similarity=0.347 Sum_probs=225.7
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC--CC----CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC--
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL--GP----GDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-- 240 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~--~~----~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-- 240 (475)
.++++-..+ +-++++....+.||.+........+.+ +. .-.+..|+|.. +.++||+++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 455555565 556666667777777665432222211 11 13455788876 668999999999999999987
Q ss_pred -CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCc
Q 011916 241 -CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQ 315 (475)
Q Consensus 241 -~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~ 315 (475)
.+++..|..|...+.++.|+ +++|++|+.||+|++||++ .......+.+....|..++|+| .+.+++++...|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-cccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 67777889999999999995 6999999999999999999 5566677777888999999999 7789999999999
Q ss_pred EEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCe
Q 011916 316 LLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 316 I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
|++||++.. ++..++..|.++|.++.|+|++. ++|+|| .|+.|+|||..+. ..+.++.+..++..+.|-|...+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999965 46778889999999999999665 777776 9999999999865 45677789999999999999887
Q ss_pred EEEEE-ecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCC
Q 011916 393 LVSTH-GYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 393 l~~~~-g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.++++ --.|-.|+|||++.. -+..++..|+..++.++|-. |...|.+++.||+|..-.+.....
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 66543 235778999999754 45678888999999999965 567899999999998777765543
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=214.59 Aligned_cols=271 Identities=18% Similarity=0.299 Sum_probs=224.8
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEE-EEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCS-VQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~-v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
|..++..++ -+++++.|+++++|+-..++......+ ++.+-|.. +++.+ ++-.|++|+.|+.|.+|......++.+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 455555555 477777799999999988877664333 56676766 88875 555699999999999999999999999
Q ss_pred ecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 247 FGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 247 ~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
+.+|...|.+++. +...+++|+.|.++++|-+. ++...+.+|...|.+++.-|++ .+++|+.|.+|++|.- ++
T Consensus 97 LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred hhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cc
Confidence 9999999999996 44559999999999999864 5566699999999999999987 8999999999999986 67
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.+.+|.+|..-|+++++-+++. ++.++ .||.|++|++.....+....|.+-+.++....++..+++ .++|++++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~-flScs---NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSH-FLSCS---NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVS--TGEDRTLR 244 (745)
T ss_pred hhhhhccchhheeeeEEecCCC-eEeec---CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEE--ecCCceEE
Confidence 8889999999999999999877 55544 799999999944444445578888999998888888888 66999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
||+.. ++.+.+.-.+..|+++.+-++|. |++|+.||.||||.......
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 99987 67777765566899999988886 67788999999999885544
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9e-25 Score=196.30 Aligned_cols=243 Identities=21% Similarity=0.278 Sum_probs=197.5
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ceee-EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-CKRV-RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-~~~~-~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
...+.|.+|+||| ...++++|+.||+|++|+++. +..+ +....|.++|.+++| +|..+++|+.|+.+++||+...
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5678999999999 556777999999999999987 3333 345579999999999 5799999999999999999843
Q ss_pred CccEEEecCccCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDR--ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~--~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
.+..+..|.++|..+.|-+... .|++|+.|.+|+.||.+...++.++. -...+.++..-.. +++.+. .++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p---m~vVat--a~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP---MAVVAT--AER 176 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc---eeEEEe--cCC
Confidence 5677888999999999988655 89999999999999999999888775 3566776665432 555543 799
Q ss_pred eEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceEEEecCCCc---------ce
Q 011916 360 CIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AKVSTLTGHSL---------RV 425 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~---------~V 425 (475)
.|.+|+++++...... ...-++.+++..++....+. |+-+|.+.|..+..+ +.-.+++.|.. .|
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 9999999876543322 24567899999998888877 889999999988765 55566666652 47
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++++|+|.-..|+|++.||++.+||-+...+...
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 8899999999999999999999999887766655
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=199.04 Aligned_cols=260 Identities=18% Similarity=0.317 Sum_probs=226.3
Q ss_pred EEeeCCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEE
Q 011916 202 RLCDLGPGDSVCSVQWTR---EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQH 276 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iw 276 (475)
..|. +|..+|..++|+| +|-+|++++.||.-.+-+-+++.-+.+|.+|.+.|+....|. ...++++.|-+-++|
T Consensus 8 l~c~-ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCH-GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEc-CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 3443 8999999999986 889999999999999999999999999999999999999864 567888999999999
Q ss_pred ECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 277 DLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 277 d~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
|.- .+..+..+ .|+.-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|+.+.|+...+.++.+.
T Consensus 87 ~a~-tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-- 162 (334)
T KOG0278|consen 87 DAV-TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-- 162 (334)
T ss_pred hhh-hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec--
Confidence 987 44444444 488889999999999999999999999999998653 5678889999999999999888888863
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|++|++||.+++..++.+...++|.++..+++|.+|.++. .+.|.+||..+...+..++. ...|.+...+|+..
T Consensus 163 -dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 163 -DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE 237 (334)
T ss_pred -cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec---CceeEEeccccccceeeccC-ccccccccccCCCc
Confidence 89999999999999999999999999999999999998853 46799999999998887763 45688999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCC--cccCCccccccC
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPA--LVKDTSLWSLGR 471 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~--~~~~~~v~s~~~ 471 (475)
.+++|++|..++.||..++..... ..+.++|.++.+
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF 275 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence 999999999999999999988765 345566665544
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-24 Score=205.57 Aligned_cols=243 Identities=21% Similarity=0.401 Sum_probs=196.0
Q ss_pred CCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEE---------eeCCCCCcEEEEEEcCC-CCEEEEEeCCC
Q 011916 165 LQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRL---------CDLGPGDSVCSVQWTRE-GSYISVGTNLG 231 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~---------~~~~~~~~V~~v~~spd-g~~la~g~~dg 231 (475)
+.++--||.+..-|+ +++|+.. ++.|+|||.....-... .-.+|.+.-++++|++. .-+|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 344555777777775 5666654 78999999875322111 11277777788999994 45799999999
Q ss_pred eEEEEECCCCe-------eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCC-CCccEEEecCccCCEEEEEE
Q 011916 232 QVQVWDGTQCK-------RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV-SSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 232 ~v~iwd~~~~~-------~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~ 300 (475)
+|.+||+.... ....+.+|...|..++|+ ..+|++++.|+.+.|||+|. ..+......+|.++|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999986532 345678999999999995 58999999999999999996 45566778899999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-----
Q 011916 301 SH-DDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN----- 373 (475)
Q Consensus 301 s~-~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~----- 373 (475)
+| ++..||+|+.|++|.+||+++. ++++.+.+|...|..|.|+|+...++++++ .|+.+.+||+..-....
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhh
Confidence 99 7779999999999999999975 468899999999999999999999999987 99999999986422111
Q ss_pred -------ee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 374 -------SV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 374 -------~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.+ .|...|..+.|+|+...++++ ...|+.+.||++.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 12 355789999999999998886 5689999999975
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.9e-24 Score=192.92 Aligned_cols=254 Identities=20% Similarity=0.248 Sum_probs=205.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...+.|.+|.|+|.+..|++++.||++++||+........+ .|..++.+++| +...+++|+.||.|+.+|+... ..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCC--cc
Confidence 55789999999999999999999999999999988555555 48999999999 5689999999999999999743 34
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+..|...|.||.+++....+++|+.|++|++||.+....+..+.. ...|.++....+ .|++ | +.|.++.+||
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~--~LvV-g--~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN--RLVV-G--TSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC--EEEE-e--ecCceEEEEE
Confidence 45677999999999999888999999999999999997555555543 447888887644 3555 3 3899999999
Q ss_pred CCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCC---------cceEEEE
Q 011916 366 TSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHS---------LRVLYLA 429 (475)
Q Consensus 366 ~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~---------~~V~~l~ 429 (475)
+++....... ...-++.++++.|++.-.++ ++-+|.|.+=.+... +....++.|. -+|++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 9987655533 34568999999998888888 788999988666554 4455666664 3589999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC-CccccccC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD-TSLWSLGR 471 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~-~~v~s~~~ 471 (475)
|+|-...||||+.||.|.+||+++.+....+.+- ..|-++++
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 9999999999999999999999999888776554 44544443
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5e-25 Score=215.59 Aligned_cols=270 Identities=20% Similarity=0.346 Sum_probs=228.6
Q ss_pred CEEEEEcCCeEEEEECCCCcE------EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEecCCC
Q 011916 180 NVLAVGLGTCVYLWTASNSKV------TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFGGHQ 251 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~------~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~~h~ 251 (475)
.++++|.||.|++|+.....- ...++ .|.+.|..+....+|+.|++++.|-+|++|+...+ -+..++..|.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 388999999999999875433 22222 67899999999999999999999999999999877 6778889999
Q ss_pred CceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc---------cEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 252 TRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD---------YICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 252 ~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
..|.|+++ +..++++|+-|+.|.+||+..... ....+. ++...|.+++.++.|..+++|+..+.|++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 99999998 568999999999999999984321 122333 78899999999999999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~ 397 (475)
||.++.+.+..+.+|...|+.+..++||..++.++ .||+|++||+...+|+.++. |...|.++..+|+-..+++
T Consensus 198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs-- 272 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS-- 272 (735)
T ss_pred eccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe--
Confidence 99999999999999999999999999999888754 69999999999999998874 6667999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|+.||.|+.=|+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|......
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999999999998864443333456678888877655555777889999999887654
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.2e-25 Score=196.66 Aligned_cols=248 Identities=18% Similarity=0.316 Sum_probs=205.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CeeeEEecCCCCceEEEEeCC--CEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------------------CKRVRTFGGHQTRAGVLAWNS--RILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~--~~l~s 266 (475)
.|...+.+.+|++||.++|+|+.|..|+|.|++. .-.++++-.|...|.++.|++ .+|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 7899999999999999999999999999999862 135677889999999999986 79999
Q ss_pred EeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEE
Q 011916 267 GSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAW 342 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~ 342 (475)
|++|++|+++|+..... ...+.......|.+|.|+|.|.+|++|....++++||+.+.++...- ..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 99999999999974321 11122234567999999999999999999999999999987765432 358999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++.++ ++++++ .||.|++||--+++|+.++. .++.||+..|..+|+++++ .+.|..+++|.+.++..+.++.
T Consensus 270 s~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceEEEEe
Confidence 99999 777765 99999999999999999884 4578999999999999999 7799999999999999999887
Q ss_pred CC--Ccc---eEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 420 GH--SLR---VLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 420 ~h--~~~---V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
|- +++ -+...|+....+++.-.+ .+.+.-||-.+..+...
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 63 222 345668877777776544 46788999888776654
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.2e-24 Score=215.46 Aligned_cols=241 Identities=19% Similarity=0.277 Sum_probs=209.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-KRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
.|....+.|+|.|+|.+|++++.||.|++|+.... +.-.++..+...|.+++-...+|++|+.+++|.+|.+. ....-
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp-s~~~~ 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP-SGEED 89 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCC-CCCcc
Confidence 67778999999999999999999999999997665 44445555888999999999999999999999999997 44444
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+....-++.+++++.+|+++|.|+.|-.|++.++........+.+|.++|.+|.|+|.+..|+++. .||.|++||
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG~v~iw~ 166 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDGKVQIWD 166 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---cCceEEEEE
Confidence 44555677899999999999999999999999999999999999999999999999999999666654 699999999
Q ss_pred CCCCceeeeec---------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCC
Q 011916 366 TSNGHQLNSVD---------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDG 434 (475)
Q Consensus 366 ~~~~~~~~~~~---------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg 434 (475)
+.++.+...+. ....++.++|+|++..+++ -..++.|.+|+..+++....+.. |...+.+++|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99998776653 1345677999999888888 56899999999999999888865 44559999999999
Q ss_pred CEEEEEeCCCCEEEEecCC
Q 011916 435 QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~ 453 (475)
+|||+++.||.|.|||+++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9999999999999999995
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.5e-22 Score=193.05 Aligned_cols=270 Identities=19% Similarity=0.316 Sum_probs=219.7
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
-+....|.|. +++.....+.++.|+.+++.+.+...+ .....|.|++|.++|+ +++|..+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 3556888884 788888899999999999987766443 3347899999999997 789999999999999988888
Q ss_pred EEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCc---------------------------------------c
Q 011916 245 RTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSD---------------------------------------Y 284 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~---------------------------------------~ 284 (475)
+....|.+.|.+++. ....|++|+.|+.|..||-.-... .
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 888899999999998 334555599999999998421110 0
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.....+|..+...++.+|+.+++++++.|+.+++|+ ..+++.... ...++.++.|+|.| .++. |+..|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~--Gt~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAV--GTATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEE--eeccceEEEE
Confidence 122346788899999999999999999999999999 444444432 46788999999999 4555 4599999999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEec-CCCcceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLT-GHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
|+.+...+.......++..+.|+|+|.+|++ |+.|+.|+||.+.... ...... .|..+|+.|.||+|+++|.+-+.
T Consensus 434 d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred ecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 9999777777666899999999999999999 9999999999986543 332222 24488999999999999999999
Q ss_pred CCCEEEE
Q 011916 443 DETLRFW 449 (475)
Q Consensus 443 Dg~I~iW 449 (475)
|-.|.+|
T Consensus 512 d~eiLyW 518 (626)
T KOG2106|consen 512 DYEILYW 518 (626)
T ss_pred ceEEEEE
Confidence 9999999
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7e-25 Score=214.60 Aligned_cols=238 Identities=20% Similarity=0.334 Sum_probs=206.1
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC-c
Q 011916 214 SVQWT-REGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS-D 283 (475)
Q Consensus 214 ~v~~s-pdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~-~ 283 (475)
.+..+ |.++||++|+.||.|++|++.... .+..++.|...|..+.. +++.|++++.|-+|++|+..... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33443 467889999999999999986432 36678899999998877 67899999999999999998554 5
Q ss_pred cEEEecCccCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCc--eeE--------EEe-ccccceeEEEECCCCCcEEE
Q 011916 284 YICKLAGHKSEVCGLKW-SHDDRELASGGNDNQLLVWNQHSQQ--PTL--------RLT-EHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~-s~~~~~lasg~~Dg~I~iwd~~~~~--~~~--------~~~-~h~~~v~~l~~sp~~~~ll~ 351 (475)
+...+..|...|.|+++ -++..++|+||-|+.|.+||+.++. .+. .+. ++...|.+++.++.|. +++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEE
Confidence 67788999999999999 7788899999999999999999772 222 222 6788999999999985 777
Q ss_pred EecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 352 SGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
+|+ ..+.|++||.++++.+..+ .|...|..+..++||..+++ +++||.|++||+....++.++..|...|+++..
T Consensus 188 sGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 188 SGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 765 8999999999999888777 57788999999999999999 889999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+|+=..+++|+.||.|..=|+....+
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCchh
Confidence 99999999999999999999988543
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-22 Score=174.64 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=204.8
Q ss_pred EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------C---------eeeEEecCCCCceEEEEeC--CCE
Q 011916 201 TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------C---------KRVRTFGGHQTRAGVLAWN--SRI 263 (475)
Q Consensus 201 ~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------~---------~~~~~~~~h~~~v~~l~~~--~~~ 263 (475)
..+..++....|.+++|+|.|.+.|+|++..+++|-.... + -..+.-+.|.+.|.|.+|+ |.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 3344446678899999999999999999999998864321 1 0112234688999999995 799
Q ss_pred EEEEeCCCcEEEEECCCCCc----cEEEecCccCCEEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCceeEEEeccc
Q 011916 264 LSSGSRDRNILQHDLRVSSD----YICKLAGHKSEVCGLKWSH----DDRELASGG-NDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 264 l~sgs~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~s~----~~~~lasg~-~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
|++|+.|++|++........ .-..+..|.+.|..++|-. .+.+|++++ .|..|++-|...++..+.+.+|.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987753221 2245677999999999965 355788765 46788999999999999999999
Q ss_pred cceeEE-EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 335 AAVKAI-AWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 335 ~~v~~l-~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+-|.++ .|+ ..++++|+ .|.+|++||++-..++..+.. .+.|..++..|.|+.|++ |..|....
T Consensus 184 ghilalyswn---~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~dssc~ 256 (350)
T KOG0641|consen 184 GHILALYSWN---GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHADSSCM 256 (350)
T ss_pred ccEEEEEEec---CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCCCceE
Confidence 998776 454 33788765 999999999999999888742 257999999999999999 88999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+||++.+..+..+..|...|.++.|+|.-.+|++++.|..|++=|+....
T Consensus 257 lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 99999999999999999999999999999999999999999999997653
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.1e-23 Score=184.14 Aligned_cols=260 Identities=15% Similarity=0.215 Sum_probs=208.7
Q ss_pred ceeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+..+.|++ +.+|+++.||.+++|++........+ .|..++.+.+|.+ ...+++|+-||.|+.+|+.++... .+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-ee
Confidence 466788886 47888899999999999988655555 6889999999986 567999999999999999887654 45
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..|...|.|+... ...+++|+.|++|++||.+. ......+. ....|.++.. .|+.|++|+.|..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 6799999999996 68999999999999999984 33333333 2347888876 47799999999999999999876
Q ss_pred eeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eeeec----------CCCCeeEEEEcCC
Q 011916 326 PTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ----LNSVD----------TGSQVCNLAWSKN 389 (475)
Q Consensus 326 ~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~----~~~~~----------~~~~v~~l~~s~~ 389 (475)
...+.. ..+..+++|++-|++..++++. -||.|.+=.+...+. ...++ ...+|.+++|+|-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 544332 2456789999999887777643 799988765554421 11121 1247999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
.+.+++ |+.||.|.+||..+.+.+..+......|..++|+.||..||+++.
T Consensus 244 ~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999 999999999999999999999888888999999999999999864
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.2e-23 Score=182.65 Aligned_cols=230 Identities=19% Similarity=0.350 Sum_probs=201.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|..+++.|.++.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+|+.. +...+++|+.|.++++||+. .++.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~ 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQ 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcE
Confidence 89999999999999999999999999999999999999999999999999886 46899999999999999999 5666
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC-------CCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQH-------SQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+..+. ....|..+.|+.+|++++.... .+.|.++|++ ..++...+..+...++.+.|.|-++.|++
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~- 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA- 164 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE-
Confidence 66665 4678999999999998887654 4679999998 45678888889999999999999997666
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
|-.||.|.+||+++|+.+..- .|...|+.++++++..++++ ++.|.+-++||+.+.+.+.++. -..+|++.++
T Consensus 165 --Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 165 --GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred --ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-ecccccceec
Confidence 338999999999998766544 47789999999999999999 8999999999999999999887 4568999999
Q ss_pred CCCCCEEEEEeCCC
Q 011916 431 SPDGQTIVTGAGDE 444 (475)
Q Consensus 431 spdg~~l~s~s~Dg 444 (475)
+|....++.|+...
T Consensus 240 sP~~d~VilgGGqe 253 (327)
T KOG0643|consen 240 SPLLDHVILGGGQE 253 (327)
T ss_pred ccccceEEecCCce
Confidence 99887777776543
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.9e-23 Score=186.92 Aligned_cols=240 Identities=23% Similarity=0.324 Sum_probs=187.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------------------------------eeEEe---
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------------------------------------RVRTF--- 247 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------------------------------------~~~~~--- 247 (475)
+|.+.|++++|+.||++||+++.|++|+||++.... .+..+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 899999999999999999999999999999976411 01111
Q ss_pred --------------------cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 248 --------------------GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 248 --------------------~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
+.|...+..+-. ++.+|++++.|..|.+|+++ ++.+..+......-+..+.||+|+
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCc
Confidence 012222333322 35789999999999999997 677777777777778889999999
Q ss_pred EEEEEeCCCcEEEEECC---CC-----ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----C---c
Q 011916 306 ELASGGNDNQLLVWNQH---SQ-----QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN----G---H 370 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~----~---~ 370 (475)
++|+++-.-.|++|..- .| ..+..+.+|.++|..++|+++...+++.. .||++++||+.- + +
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS---kDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS---KDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe---cCCcEEEeeccceEecCCCch
Confidence 99999999999999863 22 34668899999999999999998766654 899999999852 1 1
Q ss_pred eeeee-----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCC
Q 011916 371 QLNSV-----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 371 ~~~~~-----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
.++.. ..++..+.+..+|.|+.|++++| ..|.+|..++++...+++ .|...|.+++|+++|++++|++ |.
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 22222 23456679999999999999654 469999999988877775 4999999999999999999985 77
Q ss_pred CEEEEecCCCC
Q 011916 445 TLRFWNVFPSL 455 (475)
Q Consensus 445 ~I~iW~~~~~~ 455 (475)
.+++..-.++.
T Consensus 395 ~vrv~~ntpg~ 405 (420)
T KOG2096|consen 395 YVRVIRNTPGW 405 (420)
T ss_pred eeeeecCCCch
Confidence 88887644443
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=204.99 Aligned_cols=275 Identities=21% Similarity=0.310 Sum_probs=210.4
Q ss_pred CCEEEEEc-CCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ecCC
Q 011916 179 QNVLAVGL-GTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FGGH 250 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h 250 (475)
..+|+++. +|.|.++|....... ...-+.|...|..+.|.|....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 36788777 799999998765443 111237899999999999767899999999999999999998877 8899
Q ss_pred CCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--------------------------cEEEecCccCCEEE---E
Q 011916 251 QTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--------------------------YICKLAGHKSEVCG---L 298 (475)
Q Consensus 251 ~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--------------------------~~~~~~~h~~~V~~---l 298 (475)
...|.+++| ++..|++|++||.|.|||++.... .+....++...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999 578999999999999999985441 01112234445555 5
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCCceeEE--------Eecc---ccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 299 KWSHDDRELASGGN-DNQLLVWNQHSQQPTLR--------LTEH---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 299 ~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~--------~~~h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+..|...||+++. |+.|+|||++....... +..| ...+.++.....|.+|++++ .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 56678889999887 99999999996543221 2223 34577888888899999988 5999999999
Q ss_pred CCCce--eeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCC-CCEEEE
Q 011916 367 SNGHQ--LNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPD-GQTIVT 439 (475)
Q Consensus 367 ~~~~~--~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~l~s 439 (475)
.+-.. +..+.+ ...-..-..+|++.++++ |+.|.+.++|.+.+.+ ....+.+|.-.|++++|.|. -.-++|
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 76432 222221 112233457899999999 9999999999998764 45667899999999999883 335778
Q ss_pred EeCCCCEEEEecCCCCCCC
Q 011916 440 GAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~ 458 (475)
++.|-.++||++..+....
T Consensus 379 cSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eccCcceEEEeccCchhhc
Confidence 8999999999997766544
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=208.99 Aligned_cols=266 Identities=18% Similarity=0.273 Sum_probs=216.3
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNS-KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+.++|.++ .+++++.++.|++|+.... +....+.. ++..|.+++. ++.+|++|+.+++|.+|.+..++.-..+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee
Confidence 556777765 6888888999999998776 44444432 5677777765 4569999999999999999888776666
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
....-++.+++++ |.+++.|+.|-.|++.++. .......+.+|.++|.++.|+|++++||+.+-||.|+|||+.++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 6667788888885 5799999999999999998 566778899999999999999999999999999999999999887
Q ss_pred eeEEEec--------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEE
Q 011916 326 PTLRLTE--------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 326 ~~~~~~~--------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 394 (475)
...++.+ ....+..++|+|++..+++.+ .|+.|++|+..+++....+. +.+.++.++|+|+|+||+
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 7665543 134567899999988788876 69999999999999888774 334599999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+ ++.+|+|.|||..+.+. ......|.+++|.|+..-|-....-|...+|
T Consensus 249 A--s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 249 A--STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred e--eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9 88999999999988332 2234579999999998866655555555554
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=197.44 Aligned_cols=244 Identities=23% Similarity=0.362 Sum_probs=210.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----E-------------e-cCCCCceEEEEe--CCCEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR----T-------------F-GGHQTRAGVLAW--NSRILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~--~~~~l~s 266 (475)
.|.-+|++++++|++++.++++.+|+|.=|++.+++..+ . - ++|...+.+++. ++.+|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 688899999999999999999999999999998876431 1 0 267778888887 5899999
Q ss_pred EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
|+.|..|.||+.+ ....+..+.+|.+.|.+++|-.....|++++.|..|++|++.....+.++.+|...|.+|....-+
T Consensus 220 gg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCc-ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence 9999999999999 667778899999999999999888899999999999999999998899999999999999988777
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-C----
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-H---- 421 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h---- 421 (475)
+ ++++|+ .|+++++|++.....+....+.+.+-|++|-.+ .++++ |+++|.|.+|++...+++.+... |
T Consensus 299 R-~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~Hfvs--GSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 299 R-CVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVS--GSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred c-eEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceee--ccCCceEEEeeecccCceeEeeccccccC
Confidence 6 777776 999999999966666655667778999998865 45666 99999999999998888876642 2
Q ss_pred -------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 422 -------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 422 -------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...|++|+..|...++++|+.+|.|++|.+.++...
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 227899999999999999999999999999988543
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.4e-24 Score=213.59 Aligned_cols=238 Identities=18% Similarity=0.347 Sum_probs=193.2
Q ss_pred eeEEecCC--CCEEEE-EcCCeEEEEECCC---CcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee
Q 011916 171 LNLVDWSS--QNVLAV-GLGTCVYLWTASN---SKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 171 v~~l~ws~--~~~la~-~~~~~V~lw~~~~---~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
++.+.|+. ++++|. +..|.|.+||+.. .+....+. +|...|.++.|++ ...+|++|+.||+|++||+...+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 55688985 255555 5589999999987 33333343 8999999999998 557899999999999999999999
Q ss_pred eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
..++.+....|..+.|. +.+++++...|.+++||+|....+..++.+|.+.|.|+.|+|++.+||+||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 99999999999999995 589999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEE
Q 011916 321 QHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 321 ~~~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~ 396 (475)
+.+.+. +.++. ..++|..|+|-|...+.+++++--.|-.|+|||++..-. ...+ .|...++.++|......++-.
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986654 33332 457899999999999988887655789999999987543 3344 567788889997643433332
Q ss_pred EecCCCeEEEEECCC
Q 011916 397 HGYSQNQIMVWKYPS 411 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~ 411 (475)
++.||.|..-.+++
T Consensus 328 -~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 328 -CSKDGTVLQHLFKN 341 (839)
T ss_pred -ecCccHHHHhhhhc
Confidence 66788776554443
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-23 Score=181.68 Aligned_cols=233 Identities=21% Similarity=0.402 Sum_probs=188.5
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcE-EEEeeC-CCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee--eEEe
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKV-TRLCDL-GPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCKR--VRTF 247 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~-~~~~~~-~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~~--~~~~ 247 (475)
+++...++++++.|+.|+|+....... ..+.++ +|.++|..++|.. -|.+||+++.||.|.||.-++++- ....
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 667788999999999999999987653 333333 8999999999976 899999999999999999887743 3455
Q ss_pred cCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCCEEEEEEcCC---C-----------CEE
Q 011916 248 GGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHD---D-----------REL 307 (475)
Q Consensus 248 ~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~---~-----------~~l 307 (475)
..|...|++++|- |-.|++++.||.|.|.+++..+. .......|.-.|++++|.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 6899999999994 46899999999999999986532 33456789999999999985 4 569
Q ss_pred EEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCcee--eee--cCC
Q 011916 308 ASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQL--NSV--DTG 378 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~--~~~ 378 (475)
++|+.|+.|+||+..++. ...++.+|.+.|+.++|+|.- +..+++++ .||++.||-....... .++ +..
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCC
Confidence 999999999999998753 334588999999999999964 44577765 9999999987632111 111 245
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
..+..+.|+..|+.|++ ++.|+.|.+|.-.
T Consensus 257 ~~~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred cceEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 67999999999999999 7789999999854
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=7.6e-23 Score=191.87 Aligned_cols=236 Identities=15% Similarity=0.224 Sum_probs=204.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...++++...+....+++|+.|..+.++|...++.+.+++||...|+.+.+++ ..+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 45678888888778899999999999999999999999999999999999975 7889999999999999974 44667
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
....|..+|+.+..+|.|.||+++++|++..+.|++++..+..... ..-.+++++|+|||- |+.+ |+.|+.|+||
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgt--gt~d~~vkiw 374 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGT--GTPDGVVKIW 374 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEec--cCCCceEEEE
Confidence 7888999999999999999999999999999999999988776554 234589999999997 6666 4599999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~ 442 (475)
|+..+..+..+. |.++|..++|+.+|-+|++ +.+|+.|++||++..+...++.-.+ ..|..+.|.+.|++|+.++.
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc
Confidence 999999888885 7789999999999999999 7789999999999888777776432 36999999999999999977
Q ss_pred CCCEEEEe
Q 011916 443 DETLRFWN 450 (475)
Q Consensus 443 Dg~I~iW~ 450 (475)
|=.|++++
T Consensus 453 ~l~Vy~~~ 460 (506)
T KOG0289|consen 453 DLQVYICK 460 (506)
T ss_pred eeEEEEEe
Confidence 64444444
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.1e-23 Score=192.39 Aligned_cols=275 Identities=20% Similarity=0.387 Sum_probs=205.9
Q ss_pred CCEEEEEcC--C----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCe---
Q 011916 179 QNVLAVGLG--T----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-------EGSYISVGTNLGQVQVWDGTQCK--- 242 (475)
Q Consensus 179 ~~~la~~~~--~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-------dg~~la~g~~dg~v~iwd~~~~~--- 242 (475)
++++.++.. + .||||+-....+-...++--...-.|++|.. .|+|+|+|+.|-.|.|||+.-..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 577777652 2 5788876653322111111123446777753 36899999999999999975211
Q ss_pred ------------------eeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc
Q 011916 243 ------------------RVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301 (475)
Q Consensus 243 ------------------~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 301 (475)
.-....+|+..|.+|+||. +.|++|+.|.+|++||+. .+++...+..|...|.++.|+
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWH 295 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEec
Confidence 0011337999999999974 899999999999999999 778888899999999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CC
Q 011916 302 H-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVD-TG 378 (475)
Q Consensus 302 ~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~-~~ 378 (475)
| ....|++|+.|++|.+.|++........-...+.|..++|.|.....+.++. .||.++-+|++.. +++.++. |.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEecc
Confidence 9 6679999999999999999953332222235678999999999998888864 9999999999875 7887774 78
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..|.+|+++..-..++++ ++.++.|++|++..... +..-.-.-++..|+++.|+-. +|+.|+..+.++|||+....
T Consensus 374 ~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCcceEEecCCCCcceee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 899999999998888877 77999999999865433 211111223466777777654 56677778889999998765
Q ss_pred CC
Q 011916 456 KA 457 (475)
Q Consensus 456 ~~ 457 (475)
..
T Consensus 453 ~V 454 (463)
T KOG0270|consen 453 PV 454 (463)
T ss_pred hH
Confidence 43
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.3e-23 Score=204.38 Aligned_cols=248 Identities=27% Similarity=0.402 Sum_probs=207.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EecCCCCceEE-EEeC---CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR--TFGGHQTRAGV-LAWN---SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~-l~~~---~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|...|..++..+. ..++.++.||++++|+-...+.+. .+.+|.+.|.. +++. +..|++|+.|++|.+|...
T Consensus 12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~- 89 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS- 89 (745)
T ss_pred cCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-
Confidence 88999999887654 479999999999999976555443 46678887776 7773 4679999999999999998
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
...+...+.+|++.||++....++. +++|+.|.++++|... ++...+.+|.+.|.+++.-|++ .+++|+ .|.+
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~--~~vTgs--aDKt 162 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN--TYVTGS--ADKT 162 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC--cEEecc--Ccce
Confidence 6788899999999999999888886 9999999999999865 4556689999999999999998 455554 8999
Q ss_pred EEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 361 IRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
|++|.- ++.++++. |...|..+++-+++..+- ++.||.|++|++ +++.+.++.+|+.-|+++....++..+++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS---csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS---CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEe---ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 999985 67777774 678899999998876554 458999999999 89999999999999999998888899999
Q ss_pred EeCCCCEEEEecCCCCCCCCccc-CCccccccC
Q 011916 440 GAGDETLRFWNVFPSLKAPALVK-DTSLWSLGR 471 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~~-~~~v~s~~~ 471 (475)
+++|++++||+.. .+.+.+.. ...+|+..+
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 9999999999998 55555444 347887653
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=182.41 Aligned_cols=248 Identities=20% Similarity=0.350 Sum_probs=196.5
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEe-C---CCEEEEEeCCCcEE
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAW-N---SRILSSGSRDRNIL 274 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~-~---~~~l~sgs~dg~I~ 274 (475)
+.++..|.+.|..+...--|+.||+++.|++|+|+.+... +++.++.+|.++|..++| + |.+|++++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3444478888999888889999999999999999998754 567889999999999999 4 68999999999999
Q ss_pred EEECCCCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCC---
Q 011916 275 QHDLRVSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPH--- 345 (475)
Q Consensus 275 iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~--- 345 (475)
||.-.... ........|...|++++|.|. |-.||+++.||.|.|.+.+.. ........|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99987431 233446679999999999984 568999999999999998754 122344579999999999986
Q ss_pred CC----------cEEEEecCCCCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEEEEE
Q 011916 346 QS----------SLLASGGGTADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 346 ~~----------~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd 408 (475)
|. +-+++|| .|+.|+||+...++- ...+ .|...|..++|.|.- .+|++ ++.||.+.||.
T Consensus 164 g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt 239 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWT 239 (299)
T ss_pred ccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEE
Confidence 31 2367766 899999999988632 2223 477889999999965 34555 88999999998
Q ss_pred CCCC--c-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 409 YPSM--A-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 409 ~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.... + ....++.....+..+.||..|..|+.++.|..|.+|.=..
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7522 1 1222334567799999999999999999999999997553
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.6e-22 Score=178.89 Aligned_cols=276 Identities=20% Similarity=0.327 Sum_probs=214.6
Q ss_pred CceeEEecCCC---CEEEEEcCCeEEEEECCCCc--------EEEEe------eCCCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 169 FYLNLVDWSSQ---NVLAVGLGTCVYLWTASNSK--------VTRLC------DLGPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 169 ~~v~~l~ws~~---~~la~~~~~~V~lw~~~~~~--------~~~~~------~~~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
-.||.++..+. .+|.++.||.|.+||++... ....+ +.+|.-.|.++.|-| |.-++.+++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 34666776653 57888889999999997643 11112 125667899999999 66789999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeCC-----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS-----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.+++|||..+.+....|+ ..+.|..-+|++ .++++|.+|-.|++.|+. .+.....+.+|.+.|.++.|+|...
T Consensus 124 htlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred ceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeeccccCceEEEEeccCce
Confidence 999999999988887776 345677666643 578888999999999999 7888999999999999999999665
Q ss_pred -EEEEEeCCCcEEEEECCCC-ceeEE--------------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 306 -ELASGGNDNQLLVWNQHSQ-QPTLR--------------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 306 -~lasg~~Dg~I~iwd~~~~-~~~~~--------------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.||+|+.||.|++||++.. .+... -..|.+.|..++|+.++.+++.+| .|..+++|+..+|
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G 278 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESG 278 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccC
Confidence 6889999999999999853 22222 234788999999999999888876 6999999999887
Q ss_pred ceeee-e---cC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 370 HQLNS-V---DT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 370 ~~~~~-~---~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+.... + -+ .+.-..+. +-+...++. --.++.+.++.+-+++.+..+..|-..|.+.++-|+=+...+|..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~--~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL--FPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEE--EecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 64322 1 11 11111122 334444444 224589999999999999999999989999999999999999999
Q ss_pred CCCEEEEecC
Q 011916 443 DETLRFWNVF 452 (475)
Q Consensus 443 Dg~I~iW~~~ 452 (475)
|+.|..|-..
T Consensus 356 d~ni~~w~p~ 365 (397)
T KOG4283|consen 356 NGNIYMWSPA 365 (397)
T ss_pred CCcccccccc
Confidence 9999999883
No 121
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.7e-23 Score=195.39 Aligned_cols=259 Identities=20% Similarity=0.327 Sum_probs=210.5
Q ss_pred eeEEecCCCC-EEEEEc--CCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 171 LNLVDWSSQN-VLAVGL--GTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~--~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.+.|+..+ +++++. |..|.+|.-... ++..+-. ...+.-.||+......|+++|+..|.|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 5668999886 444433 567888865433 3333222 223355566665666899999999999999999888888
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd~~ 322 (475)
.+++|...|+++.+| ..+|++++..|.|.|..+.+.......-.+..+.|.-+.|++..+ +|.+++.+|.|.+||..
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 899999999999985 589999999999999999854333222233355677999999666 56678999999999999
Q ss_pred CCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
...+.+.+. .|.++...|+|+|.+..|+++-| .|..|.+||+...+....+....+...++|.++|.+|++ |...
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a--G~s~ 271 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA--GNSK 271 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe--ecCC
Confidence 888877654 59999999999999999999987 999999999999888888888899999999999999999 9999
Q ss_pred CeEEEEECCCC-ceEEEecCCCcceEEEEECCCC
Q 011916 402 NQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 402 g~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg 434 (475)
|.|..||++.. .++..+..|...|++++|-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999864 6788888999999999997764
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.8e-23 Score=199.06 Aligned_cols=259 Identities=24% Similarity=0.317 Sum_probs=213.8
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecC--CCCceEEEEe--CCCEEEEEeCCCcEEE
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGG--HQTRAGVLAW--NSRILSSGSRDRNILQ 275 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~--h~~~v~~l~~--~~~~l~sgs~dg~I~i 275 (475)
+..+.|++-|.++.++...+++++|+. |.|+|||+... ..+..+.. ....|.++.. +++.|++|+.-.++.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 334578999999999999999999988 88999998643 23333332 2344555444 7899999999999999
Q ss_pred EECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 276 HDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 276 wd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
||+......+. .+.........++.+||.+..+++..||.|.|||+.+...+..|.+|...+.||..++||..|.+ ||
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT-GG 570 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT-GG 570 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec-CC
Confidence 99986543332 23333345677899999999999999999999999999999999999999999999999996655 44
Q ss_pred CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
-|++|+.||++++..+...+..++|.++..+|++.+|++ |-.++.+.|...... ....+..|+..|.++.|.+.|
T Consensus 571 --lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp-~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 571 --LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred --CccceeehhhhhhhhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCc-cceeecccccEEEEEEecccC
Confidence 899999999999999999999999999999999999999 999999999886543 345667799999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcccCCcccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWS 468 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s 468 (475)
+++++.+.|..+..|....+...-...+...|.+
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE~SsVls 679 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 679 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccccCccee
Confidence 9999999999999999988877665555555543
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=180.72 Aligned_cols=279 Identities=15% Similarity=0.217 Sum_probs=214.1
Q ss_pred eeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.+|+.|+.- .+||+|. +|.|.|||..+..+-+.+. .|-.+|++++||+||+.|++++.|..|.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 678889874 5566555 9999999999988777775 889999999999999999999999999999999999888776
Q ss_pred CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 249 GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 249 ~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
...+|+...|++ +..++.-.+..-.+-++..+.+.+....... ....+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 567899999964 4444444444455555542221111111111 112223588899999999999999999999
Q ss_pred CCceeEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------cee--eee---cCCCCeeEEEEcCC
Q 011916 323 SQQPTLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-------HQL--NSV---DTGSQVCNLAWSKN 389 (475)
Q Consensus 323 ~~~~~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-------~~~--~~~---~~~~~v~~l~~s~~ 389 (475)
+.+++..++-.. ..|+.|.++..|+.++. .+.|+.|+.|+++.- +.. +.+ -..-+-.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~lii---NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLII---NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEE---ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988887655 78999999999997777 347999999998621 111 111 12345577889999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|.++++++ .....++||....|..+..+.|.. .....+.|+|-...+++- ..|.|+||.+...+.
T Consensus 261 geYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 261 GEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 99998853 467789999999999999999877 567889999999888888 678999999876544
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=207.53 Aligned_cols=211 Identities=18% Similarity=0.313 Sum_probs=177.8
Q ss_pred eeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC-------------------------------C-----
Q 011916 242 KRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS-------------------------------S----- 282 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~-------------------------------~----- 282 (475)
...+.+. .|.+.|+++.| +|++||+||.|+.|+||.+... .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3444556 89999999999 6899999999999999987640 0
Q ss_pred -----------------------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeE
Q 011916 283 -----------------------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKA 339 (475)
Q Consensus 283 -----------------------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~ 339 (475)
+++..+.+|.+.|..|.||.++ +|++++.|.+|++|++...+++..|. |...|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1134467899999999999765 99999999999999999999998885 9999999
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
|+|+|-...++++|+ -|++|+||++...+.+...+...-|++++|.|+|++.++ |.-+|.+++|+....+......
T Consensus 415 VaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred EEecccCCCcEeecc--cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeee
Confidence 999998888888865 999999999999999998898999999999999999999 9999999999998877655443
Q ss_pred ---------CCCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 420 ---------GHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 420 ---------~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.|. +|+++.|.|. ...|++.+.|..|||+|........+
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence 133 7999999974 33566778999999999966554444
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.4e-22 Score=177.35 Aligned_cols=247 Identities=17% Similarity=0.332 Sum_probs=190.6
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeEEecCCCCceEEEEe-C---CCEEEEEeCCCcEE
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ----CKRVRTFGGHQTRAGVLAW-N---SRILSSGSRDRNIL 274 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~l~~-~---~~~l~sgs~dg~I~ 274 (475)
.++.+|.+-|.++.|.+.|+.+|+|+.|++|+|||... ..+....+.|.+.|..+.| + |+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34447889999999999999999999999999999643 3566778899999999999 2 68999999999999
Q ss_pred EEECCCC--------CccEEEecCccCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC------ceeEEEe-------
Q 011916 275 QHDLRVS--------SDYICKLAGHKSEVCGLKWSH--DDRELASGGNDNQLLVWNQHSQ------QPTLRLT------- 331 (475)
Q Consensus 275 iwd~~~~--------~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~~~------~~~~~~~------- 331 (475)
||.-... -....++....+.|+.++|.| -|-.||+++.||.|+||+.-.. .....+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9976211 123455677788999999999 5779999999999999987542 2222222
Q ss_pred ccccceeEEEECCCC--CcEEEEecCCCC-----CeEEEEECCCCc-ee---eee-cCCCCeeEEEEcCCC----CeEEE
Q 011916 332 EHTAAVKAIAWSPHQ--SSLLASGGGTAD-----RCIRFWNTSNGH-QL---NSV-DTGSQVCNLAWSKNV----NELVS 395 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~--~~ll~sg~Gs~d-----~~I~iwd~~~~~-~~---~~~-~~~~~v~~l~~s~~~----~~l~~ 395 (475)
.+.....|+.|+|.. ..+++.|+ .+ +.++||....+. .. .++ ++..+|+.++|.|+- ..|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 356677899999742 34677764 22 378888765433 22 222 578899999999963 23444
Q ss_pred EEecCCCeEEEEECCC--------------------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 396 THGYSQNQIMVWKYPS--------------------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~--------------------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++.|| |+||++.. -+.+..+.+|.+.|..+.|+-.|..|++.|.||.||+|...-.
T Consensus 245 --A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 245 --ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred --eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 77888 99999862 1345667789999999999999999999999999999986543
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-22 Score=191.89 Aligned_cols=247 Identities=19% Similarity=0.251 Sum_probs=204.4
Q ss_pred CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 180 NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 180 ~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
.++++.. -..|.+|.+.......... --.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+|+.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred heeeecccCccccccccCchhhhhhhc-ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 3444444 3478889887655444221 2367899999999999999999999999999999999999999999999999
Q ss_pred e--CCCEEEEEeCCCcEEEEECCC--------CCccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce
Q 011916 259 W--NSRILSSGSRDRNILQHDLRV--------SSDYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 259 ~--~~~~l~sgs~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
| |+.+|++|+.||.|.+|++.. ...+...+..|.-.|+++...+. ...|++++.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 9 579999999999999998731 23567889999999999998774 35899999999999999999988
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------------eeeee-cCC--CCeeEEEEc
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----------------QLNSV-DTG--SQVCNLAWS 387 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----------------~~~~~-~~~--~~v~~l~~s 387 (475)
+.++. ....+.+++..|-+..+++ |+.+|.|.+.++.+.. .+..+ .+. .+|+|++++
T Consensus 211 Llti~-fp~si~av~lDpae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 211 LLTIT-FPSSIKAVALDPAERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred eEEEe-cCCcceeEEEcccccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 87775 5788999999999986666 5699999998875432 11111 233 489999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
-||..|++ |+.||+++|||+.+.+++.++..-.++|+.+.+.|-
T Consensus 287 ~DgtlLlS--Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 287 TDGTLLLS--GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cCccEEEe--eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999 999999999999999999988877889999998664
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.1e-21 Score=182.63 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=220.0
Q ss_pred CCCceeEEecCCC---CEEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ---NVLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~---~~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~ 240 (475)
.+--|.|++|++- .++++-. +.-+.+||...+....-.. ..++.|....|+|.+..|++....|.+.+|+.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 3455899999962 4555543 3468999998776544332 3467889999999776666666679999999998
Q ss_pred CeeeEE---ecCC-CCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 241 CKRVRT---FGGH-QTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 241 ~~~~~~---~~~h-~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+...+. ++.+ ...|.|++|. +.-+++|..+|.|.||+.. .....+....|.+.|.+++.-.+|.+| +|+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEecCccEe-ecCccce
Confidence 866554 4433 3579999995 4678999999999999997 444444555999999999999999655 4999999
Q ss_pred EEEEECCCCc----------------------------------------eeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 316 LLVWNQHSQQ----------------------------------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 316 I~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
|..||-.-.+ ......+|......++.+|+...++++|
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-- 387 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-- 387 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc--
Confidence 9999932100 0112345778889999999988666665
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|+.+++|+ ..+++.......++.++.|+|.| .+++ |...|...+.|.++...+..-+. ..++..+.|+|+|.
T Consensus 388 -qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 -QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred -CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 799999999 67777888888999999999999 7777 99999999999999666655555 88999999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCC
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+||.|+.|+.|+||.+........
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEE
Confidence 999999999999999987665443
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=4.1e-22 Score=188.20 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=211.8
Q ss_pred CCceeEEecCCC---CEEEEEc-CCeEEEEECCCC----cEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 011916 168 DFYLNLVDWSSQ---NVLAVGL-GTCVYLWTASNS----KVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 168 d~~v~~l~ws~~---~~la~~~-~~~V~lw~~~~~----~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~ 238 (475)
+-.+.+++|+|. +++++|. .|.|-+||+.+. .-+.++. .|..+|.++.|+| +-..+++.+.||+|++-|+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeee
Confidence 345889999984 5677666 899999999522 1223332 7899999999999 4578999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCC
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGND 313 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~D 313 (475)
++......+.. ....+..+.++ ...++.|..=|...+||.+..+.....+.-|...|++++++| ...+||+++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 87654443333 33444555553 456666666679999999988887888888999999999999 56689999999
Q ss_pred CcEEEEECCCCc----eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC----CCceeeeecCCC------
Q 011916 314 NQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS----NGHQLNSVDTGS------ 379 (475)
Q Consensus 314 g~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~----~~~~~~~~~~~~------ 379 (475)
++++|||++... ++.....|...|.+..|+|.+..|++++ .|..|+|||.. .-.+...+.|..
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999998532 2344457999999999999999888776 79999999983 444555555432
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc-ceEE-EEECCCCCEEEEE-eCCCCEEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL-RVLY-LATSPDGQTIVTG-AGDETLRFWNVF 452 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~-~V~~-l~~spdg~~l~s~-s~Dg~I~iW~~~ 452 (475)
......|.|+..++++ |.--..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--.
T Consensus 422 T~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 2456789999999988 77778899999988888888765443 4544 4799988755555 456788887543
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.7e-24 Score=209.98 Aligned_cols=231 Identities=21% Similarity=0.390 Sum_probs=210.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|...|-++.|+ ..+|++|+.+|+|++||+. ..+.
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~ 104 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKI 104 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhh
Confidence 567788888887788999999999999999998888888899999999999996 4789999999999999999 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++.+.+|...++++.|+|-+.+.|+|+.|..+++||.+...+.+.+.+|...|..+.|+|+|. ++++|+ .|..++||
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~--ed~tvki~ 181 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-WVASGG--EDNTVKIW 181 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-eeeccC--Ccceeeee
Confidence 889999999999999999999999999999999999998889999999999999999999999 455554 79999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|...|+.+..+. +.+.+..+.|+|..-.+.. |+.|+.+++||+++.+.+.........|.++.|+|++..+++|..+
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999997 7789999999998877777 9999999999999999999888889999999999999988887654
No 130
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2e-22 Score=192.67 Aligned_cols=239 Identities=18% Similarity=0.330 Sum_probs=189.2
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEee-----------CCCCCcEEEEEEcCCC-CEEEEEeCCCeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCD-----------LGPGDSVCSVQWTREG-SYISVGTNLGQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~-----------~~~~~~V~~v~~spdg-~~la~g~~dg~v~ 234 (475)
-.++.+.|++. .+|+++.....+|+|-...++...+. .+|...++|.+|+|+. ..+++++.||+++
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 35788999974 68888989999999988777665542 2688899999999955 6899999999999
Q ss_pred EEECCCCee-eEEec-----CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccC--CEEEEEEcC
Q 011916 235 VWDGTQCKR-VRTFG-----GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKS--EVCGLKWSH 302 (475)
Q Consensus 235 iwd~~~~~~-~~~~~-----~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~--~V~~l~~s~ 302 (475)
|||+...+. ...++ +....++.++|+ +..|++|+.||.|.+|+..... .....-.+|.. .|+||.||+
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 999986543 22222 344578899995 6899999999999999985322 22344556776 999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-eeEEEec--cccceeEEEECCCCCcEEEEec----CCCCCeEEEEECCCCceeeee
Q 011916 303 DDRELASGGNDNQLLVWNQHSQQ-PTLRLTE--HTAAVKAIAWSPHQSSLLASGG----GTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 303 ~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~----Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
||++|++-+.|+++++||++..+ ++....+ ...+-+.++|+|+.+ |+++|. |...+.+.+||..+...+..+
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 99999999999999999999754 4554444 234557899999998 666654 335678999999999999888
Q ss_pred cC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 376 DT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 376 ~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.. ...|..+.|+|.-+.|++ |+.||.+++|--+
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDP 487 (641)
T ss_pred cCCCceEEEEeecchhhheee--ecCCCceEEEECc
Confidence 64 567999999999999999 8889999987543
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=7.7e-22 Score=194.83 Aligned_cols=287 Identities=18% Similarity=0.329 Sum_probs=219.9
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEee--CCCCCcEEEEEEcCC-----------CCEEEEEeCCCeEEE
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCD--LGPGDSVCSVQWTRE-----------GSYISVGTNLGQVQV 235 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~--~~~~~~V~~v~~spd-----------g~~la~g~~dg~v~i 235 (475)
..++.|++. .+..+-.|..+||||+.+-..+..+. +-|...|++|.--|- ...+.+++.||+|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 445677764 57777789999999998754332221 257777777765541 135899999999999
Q ss_pred EECCCCeeeEEe-------------------------------------cCCCCceEEEEe--CCCEEEEEeCCCcEEEE
Q 011916 236 WDGTQCKRVRTF-------------------------------------GGHQTRAGVLAW--NSRILSSGSRDRNILQH 276 (475)
Q Consensus 236 wd~~~~~~~~~~-------------------------------------~~h~~~v~~l~~--~~~~l~sgs~dg~I~iw 276 (475)
||++.+..-..+ -+....+.+++. ++.+|++|.+-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998752110000 011234566666 67999999999999999
Q ss_pred ECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCC--CcEE
Q 011916 277 DLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQ--SSLL 350 (475)
Q Consensus 277 d~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~--~~ll 350 (475)
++. .......+.+|..+|.|+.|+. ..++||+++.|..|+|||... -.+++++.+|...|+++.|.-.| ..++
T Consensus 487 ~Lq-~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQ-ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred Eeh-hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 998 6677788899999999999986 456899999999999999874 45678899999999999998766 4455
Q ss_pred EEecCCCCCeEEEEECCC---Cceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---C
Q 011916 351 ASGGGTADRCIRFWNTSN---GHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---H 421 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~---~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h 421 (475)
.+| .|+.|.+--.+. |...... -....+..++..|..+++++ ++.|..|+||++.+++++..+++ |
T Consensus 566 scG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t--~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 566 SCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT--VCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE--EecccceEEEeccccceeeeecccccC
Confidence 554 688776543332 2222111 12356889999999999999 78999999999999999999986 6
Q ss_pred CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 422 SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 422 ~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
++....+...|.|-||++.+.|.+|.|+|+..+++....-.+
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 778889999999999999999999999999999988775443
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.9e-22 Score=178.40 Aligned_cols=225 Identities=21% Similarity=0.336 Sum_probs=186.3
Q ss_pred EEEEeCCCeEEEEECCC------------CeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 224 ISVGTNLGQVQVWDGTQ------------CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
|++|++...|.-+++.- ..++..+..|.+.+++++.++.++++|+.|-+|+|||++ .......+..|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~-k~~qlg~ll~H 82 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMR-KRKQLGILLSH 82 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEecc-chhhhcceecc
Confidence 56677666555555421 122445678999999999999999999999999999998 56667778889
Q ss_pred cCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 292 KSEVCGLKWSHDDR--ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 292 ~~~V~~l~~s~~~~--~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+.|+++.|.+.-. .|++|+.||.|.+|+......+..++.|.+.|+.++.+|.++.-++.| .|+.++.||+-+|
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRG 159 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc---CCceeeeehhhcC
Confidence 99999999998665 999999999999999999999999999999999999999999555555 5999999999999
Q ss_pred ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 370 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+.-...........+.|+|.|.++++ + ..+.|-+|.+.+......+.. ..++.++.|- ++..|++|+.|+.|++|
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v--~-~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVV--S-GRNKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEE--E-eccEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 98888777777777999999998887 3 367899999988776665553 3567777775 56689999999999999
Q ss_pred ecCCCCCC
Q 011916 450 NVFPSLKA 457 (475)
Q Consensus 450 ~~~~~~~~ 457 (475)
|.+.....
T Consensus 235 D~ds~~~~ 242 (362)
T KOG0294|consen 235 DTDSDTPL 242 (362)
T ss_pred ccCCCccc
Confidence 99975443
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=185.10 Aligned_cols=280 Identities=15% Similarity=0.246 Sum_probs=220.6
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~ 242 (475)
..--++++.|+|. -++++|.|+.++||.++...-..+..+ -...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3445899999997 478888899999999876544333222 1257899999999998 88899988999999998876
Q ss_pred eeE--EecCCCC---ceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 243 RVR--TFGGHQT---RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~--~~~~h~~---~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
..+ .+.++.. .-..++-++++|+..+..|.|.+.... .+..+..++ -.+.|..++|+.|++.|++++.+|.|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 543 2334432 233445578999999999999999877 455555554 456799999999999999999999999
Q ss_pred EEECCCCceeEEEeccccce--eEEEECCCCCcEEEEecCCCCCeEEEEECCC------Cceeeee-cCCCCeeEEEEcC
Q 011916 318 VWNQHSQQPTLRLTEHTAAV--KAIAWSPHQSSLLASGGGTADRCIRFWNTSN------GHQLNSV-DTGSQVCNLAWSK 388 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~------~~~~~~~-~~~~~v~~l~~s~ 388 (475)
+||++...+++.+.. .+.| +.++.++++. ++|+| +..|.|.|||..+ .+++..+ .....|.++.|++
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~-ylA~G--S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS-YLATG--SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc-eEEec--cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 999999988888865 3333 5677778988 56665 4999999999654 3445554 3456799999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCC---CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++.|+.++...++.+++..+++......+... -+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999876667889999999988877766543 3568999999999999999999999999975
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.7e-21 Score=186.74 Aligned_cols=273 Identities=21% Similarity=0.304 Sum_probs=218.2
Q ss_pred eeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEE-EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTR-LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~-~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
+.+++++.+ +.||++. +|.|.||++..+-... .+..+.+..|.+++|++.+ .|.+.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEe
Confidence 567888875 6666665 8999999999875443 3443567899999999555 5777777899999999999999999
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
....+.|++++.+ +..++.|+.||.+..+++. .+.. ...+...++.|.+++|++++..|+.|+.||.|++||...
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 9999999999996 4899999999977777776 3322 223445568999999999999999999999999999999
Q ss_pred CceeEEEe-------c-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEE
Q 011916 324 QQPTLRLT-------E-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 324 ~~~~~~~~-------~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~ 394 (475)
+..++... . ...-|.++.|-.++ .+++| ...|+|.+||...|..+..+. +.+.|.+++..++++.++
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sg--DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASG--DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecC--cEEEe--cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 88766222 1 23457788887666 46664 489999999999999998885 778999999999999999
Q ss_pred EEEecCCCeEEEEECCCCce----EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 395 STHGYSQNQIMVWKYPSMAK----VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+ ++.|+.|..|...+... ......|...|.+++..++ .|++|+.|.++.+-....
T Consensus 262 s--aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 262 S--AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred E--ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9 77899998888765533 2333468888999999877 899999999998876554
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=7e-22 Score=188.03 Aligned_cols=287 Identities=18% Similarity=0.226 Sum_probs=222.8
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEee-CCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCC--e--eeEEecCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCD-LGPGDSVCSVQWTREGSYISVG--TNLGQVQVWDGTQC--K--RVRTFGGHQ 251 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~-~~~~~~V~~v~~spdg~~la~g--~~dg~v~iwd~~~~--~--~~~~~~~h~ 251 (475)
.++.+++.+..++|||+...+....+. ......+.+++|+.... |+++ +.|..+++|.-... + .++...+.
T Consensus 3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD- 80 (673)
T ss_pred cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc-
Confidence 367888889999999998765443332 12234489999987664 5444 44677888974322 1 12222232
Q ss_pred CceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 011916 252 TRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 252 ~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~ 329 (475)
.-.|++. -..++++|+..+.|+|||++ ...+.+.+.+|...|+++.++....+||+++..|.|.|..+.++.....
T Consensus 81 -~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 81 -NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 3333333 24799999999999999999 6777888999999999999999999999999999999999999887777
Q ss_pred Eecc-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 330 LTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 330 ~~~h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
|... ...|.-+.|+|..+.++.+.+ .+|.|.+||+....++... .|..+...++|+|....|+++.| .|..|.+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~ 235 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINI 235 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEE
Confidence 7654 345668999999999999987 9999999999988887766 47788999999999888887755 6899999
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc--ccCCccccccCcc
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL--VKDTSLWSLGRTH 473 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~--~~~~~v~s~~~~~ 473 (475)
||..+......+. ...+...++|+++|.+|+.|...|.|..||+...+..-.. .++..|.++.+++
T Consensus 236 yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 236 YDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred eecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999877666665 4557889999999999999999999999999876655443 3455566665543
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.8e-20 Score=177.85 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=188.9
Q ss_pred eEEecCCC-C-EEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEe
Q 011916 172 NLVDWSSQ-N-VLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 172 ~~l~ws~~-~-~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~ 247 (475)
..++|+++ . ++++ +.++.|++||..+++....+.. ...+..++|+|+++.++++ ..++.|.+||+.+.+.+..+
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 45888887 3 4344 4578999999999987765542 2345688999999977665 45899999999998887777
Q ss_pred cCCCCceEEEEe--CCCEEEEEeCCC-cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 011916 248 GGHQTRAGVLAW--NSRILSSGSRDR-NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVWNQHS 323 (475)
Q Consensus 248 ~~h~~~v~~l~~--~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~ 323 (475)
..+ ..+.+++| ++.+++++..++ .+.+||.+. ........ ....+.++.|++++++|+++ ..++.|++||+.+
T Consensus 112 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 112 PVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 532 34567777 468888888775 466779873 33333322 23346789999999988655 4689999999999
Q ss_pred CceeEEEeccc-------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 324 QQPTLRLTEHT-------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 324 ~~~~~~~~~h~-------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++.+..+..+. .....++|+|+++.++++.+ .++.|.+||+.+++.+..+..+..+.++.|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence 87766554221 12356899999998766544 5678999999999888777667789999999999999874
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+..+|.|.+||+.+++.+..++.. ...+.++++|
T Consensus 267 -~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 267 -NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred -cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 346899999999999999988754 5568888765
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.9e-23 Score=206.82 Aligned_cols=215 Identities=25% Similarity=0.444 Sum_probs=190.9
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
.++.+|.+..+-||.+..-..+..+. +|...|.+|.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred eeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 45556667788899887654444443 89999999999999999999999999999999999999999999999999999
Q ss_pred CC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccce
Q 011916 260 NS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 260 ~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
++ .++++|+.|+.+++||++ ...+...+.+|...|..+.|+|+|+++++|+.|..++|||+..|+.+..|..|.+.+
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIR-KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV 199 (825)
T ss_pred ccceEEeccccccccceehhhh-ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccc
Confidence 85 788999999999999999 567788899999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCC
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
..+.|+|..- |+++|+ .|+++++||+++.+.+...+. ...|.++.|++++..+++ |...
T Consensus 200 ~sle~hp~e~-Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~--G~q~ 259 (825)
T KOG0267|consen 200 QSLEFHPLEV-LLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS--GEQI 259 (825)
T ss_pred cccccCchhh-hhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec--Cchh
Confidence 9999999865 788866 999999999999888877754 467999999999999888 6543
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.7e-21 Score=173.29 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=166.1
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------eeE-----EecCCCCceEEEEe---CCCEEEEE
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCK----------RVR-----TFGGHQTRAGVLAW---NSRILSSG 267 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~----------~~~-----~~~~h~~~v~~l~~---~~~~l~sg 267 (475)
.|.+.|.++...+ .|+|+++|+.||.|.|||++... .+. .-.+|.-.|..+.| +..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6789999999988 78999999999999999987532 111 11367889999999 56899999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp 344 (475)
+.|.++++||..+ .+....+. ..+.|.+-+||| ..-++|+|..|-.|++.|+.+|...+.+.+|...|.++.|+|
T Consensus 121 SFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999984 33333333 456788888988 344788888999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCC-ceeeee---------------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 345 HQSSLLASGGGTADRCIRFWNTSNG-HQLNSV---------------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~---------------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
...+++++|+ .||.|++||++.. -+...+ .+.+.+..++|+.++.++++ ...|..+++|+
T Consensus 199 ~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gtd~r~r~wn 274 (397)
T KOG4283|consen 199 SSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGTDDRIRVWN 274 (397)
T ss_pred CceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccCccceEEee
Confidence 9999999977 9999999999864 233222 24567999999999999999 66899999999
Q ss_pred CCCCc
Q 011916 409 YPSMA 413 (475)
Q Consensus 409 ~~~~~ 413 (475)
..+++
T Consensus 275 ~~~G~ 279 (397)
T KOG4283|consen 275 MESGR 279 (397)
T ss_pred cccCc
Confidence 98764
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=185.32 Aligned_cols=241 Identities=17% Similarity=0.334 Sum_probs=204.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEecCC-CCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-KRVRTFGGH-QTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h-~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...|.+++++.+.+.||++-.+|.|.||++..+ -+...+.++ ...|-+++|. +..|++.+.+|.|.-||+. ..+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~-~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH-TLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc-cCcee
Confidence 578999999999999999999999999999865 344455554 4589999996 8899999999999999998 67777
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..+....+.|.+++.+|.+..++.|+.||.++.++...++..+ .+....+.|.+++|+|++..++. |+.||.|++
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~---Gs~Dg~Iri 180 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG---GSIDGVIRI 180 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe---cccCceEEE
Confidence 7888888999999999999999999999988888887776543 33345789999999999986665 569999999
Q ss_pred EECCCCceeeeecC---------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 364 WNTSNGHQLNSVDT---------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 364 wd~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
||..++..+..+.. ..-|.++.|-.+ ..|++ |.+.|.|.+||...+..+..+..|.+.|.+|+..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 99999988773321 123667777755 45666 8999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.++++++.|+.|..+...+...
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999998887754
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=175.22 Aligned_cols=244 Identities=16% Similarity=0.293 Sum_probs=207.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC------
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL------ 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~------ 278 (475)
+|.+.|..++-......+.+++.|.+.+||.+++++++.++.||.+.|.++.|+ +.++++++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 899999999988777899999999999999999999999999999999999995 589999999999999972
Q ss_pred CC-----------------------------CC----ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 279 RV-----------------------------SS----DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 279 ~~-----------------------------~~----~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.. .+ .++..+.+|...|.+..|-..|+++++++.|.+..+||+++++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 10 00 1245678899999999999999999999999999999999999
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
++..+.+|....+.++-+|.++ |+++.+ .|.+.++||++..- .+..+ .|...|++..|..+.+ +++ |++|..
T Consensus 306 ~v~~LtGHd~ELtHcstHptQr-LVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS--gSDDrT 379 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQR-LVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS--GSDDRT 379 (481)
T ss_pred eeccccCcchhccccccCCcce-EEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee--cCCCce
Confidence 9999999999999999999988 555554 89999999998432 23333 3667899999987765 455 889999
Q ss_pred EEEEECCCCc-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 404 IMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 404 I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|++||++++. ++.++. -..+++.++.+..+..|+.--.+..|++||+......
T Consensus 380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred EEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 9999999874 566665 5667899999988889998888899999999876543
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=8.1e-21 Score=172.75 Aligned_cols=265 Identities=20% Similarity=0.376 Sum_probs=203.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEee----CCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCD----LGPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~----~~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
.++|...++.|.+|.....--+.+++ ..+.+....++|+-+ ..+||+|+.-|.|+|.|+.++++...+.+|.
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG 135 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG 135 (385)
T ss_pred ceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC
Confidence 57788888899999887654333332 246778888999864 3589999999999999999999999999999
Q ss_pred CceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 252 TRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 252 ~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..|..+.+. ++++++++.|..|++|+++ ...++.. ..+|..+|.++.|+.+|.+|+++|.|.+|++|++...+
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 999999995 5799999999999999998 5555555 46799999999999999999999999999999997321
Q ss_pred ---------------------------eeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC-CCCceee---
Q 011916 326 ---------------------------PTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT-SNGHQLN--- 373 (475)
Q Consensus 326 ---------------------------~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~-~~~~~~~--- 373 (475)
+.. +-..|...|.|+.|-- . ++.+-+ -++.|..|.. +-++.+.
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSks--cenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKS--CENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecc--cCceEEEEecchhhhhhhccC
Confidence 011 1234778888888864 4 444443 5889999987 2222211
Q ss_pred ----------eecC-CCC--eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--EEecC--CCcceEEEEECCCCCE
Q 011916 374 ----------SVDT-GSQ--VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV--STLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 374 ----------~~~~-~~~--v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~--~~l~~--h~~~V~~l~~spdg~~ 436 (475)
.++. ... ....+|.+.++.|++ |...|.|++||+...++. .++.. ....|...+|+.||.+
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI 367 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcE
Confidence 1211 122 334566788889998 999999999999876653 22222 2356899999999999
Q ss_pred EEEEeCCCCEEEEecC
Q 011916 437 IVTGAGDETLRFWNVF 452 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~ 452 (475)
|+..+.|++|.-||.-
T Consensus 368 lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 368 LVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeCCCcEEEEEee
Confidence 9999999999999853
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=6.4e-21 Score=176.22 Aligned_cols=227 Identities=24% Similarity=0.473 Sum_probs=170.9
Q ss_pred CCCEEEEE--cCCeEEEEECCCC--------------cEEEEeeC-CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 011916 178 SQNVLAVG--LGTCVYLWTASNS--------------KVTRLCDL-GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 178 ~~~~la~~--~~~~V~lw~~~~~--------------~~~~~~~~-~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~ 239 (475)
++..++++ ..|.|+||++... +...++.+ +|...=++++|||- ...|++|..-+.|++|...
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 34444443 3789999998531 11112222 67777889999992 2348888888999999988
Q ss_pred CCeee---EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 240 QCKRV---RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 240 ~~~~~---~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
++.-. ..+.+|+..|-.|+|+ ...|++|+.||+|+|||+|... +.....++|.+.|+-|.|+.+..+||+|+.
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 86543 3456899999999995 4799999999999999999652 334445889999999999998889999999
Q ss_pred CCcEEEEECCC---CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------------------
Q 011916 313 DNQLLVWNQHS---QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------------- 370 (475)
Q Consensus 313 Dg~I~iwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------------- 370 (475)
||+++|||++. ++++..|+.|..+|++|.|+|....+++++| .|.+|.+||+....
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ 400 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ 400 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence 99999999984 5688899999999999999999888888876 89999999985321
Q ss_pred eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 371 QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 371 ~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
++.....+..+..+.|+++-.-++++++ .+| +.||.
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lvsTa-~dG-fnVfk 436 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLVSTA-IDG-FNVFK 436 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEEEec-ccc-eeEEE
Confidence 1111123345778889887776666433 344 44443
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-19 Score=181.97 Aligned_cols=282 Identities=19% Similarity=0.346 Sum_probs=218.5
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCe
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREG--SYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg--~~la~g~~dg~v~iwd~~~~~ 242 (475)
-+..+.--++.++++..++.+++|+..+.+.. ...... .+.|+++ ++|.- +.++.|+.+|.++||++.+++
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~-~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K 193 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE-GDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGK 193 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeecc-CCceeeE-ecchhheeeEEEeecCCcEEEEEeccCc
Confidence 34555555778999999999999999885211 122222 2338887 46643 578999999999999999999
Q ss_pred eeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 011916 243 RVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVW 319 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iw 319 (475)
.+.+++++...|+++.-.+ +.++.|..+|+|.+++++ ..+.+..++...+.|+.++|..||+ .||+|+..|.+.+|
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 9999999999999999887 899999999999999999 5667777775579999999999998 56677777999999
Q ss_pred ECCCCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--C---------------------------
Q 011916 320 NQHSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--G--------------------------- 369 (475)
Q Consensus 320 d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~--------------------------- 369 (475)
|++..+.+..+. .|.+.|..+.|.|... ++++.+ .|+.+++|=..+ |
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~--~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAG--ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCc-eEeecc--CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999877666555 4777777777777766 444433 455544442210 0
Q ss_pred --------------------------------------------------------------------------------
Q 011916 370 -------------------------------------------------------------------------------- 369 (475)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (475)
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence
Q ss_pred ---ce-eeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe---cCCCcceEEEEECCCCCE
Q 011916 370 ---HQ-LNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL---TGHSLRVLYLATSPDGQT 436 (475)
Q Consensus 370 ---~~-~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~ 436 (475)
.. ...+++ ...+.+++.++.|+..+. |++.|.|-+|++.++-....+ ..|..+|++++...-++.
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence 00 000111 134678888999999988 999999999999999888888 579999999999888899
Q ss_pred EEEEeCCCCEEEEecCCCCCCCC
Q 011916 437 IVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+++++.||.+++|++........
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred EEEccCcceEEEEecCCcceeee
Confidence 99999999999999998775444
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=181.38 Aligned_cols=232 Identities=19% Similarity=0.353 Sum_probs=185.0
Q ss_pred CEEEEEc-CCeEEEEECCCCc-EEEEe-------------------eCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 011916 180 NVLAVGL-GTCVYLWTASNSK-VTRLC-------------------DLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 180 ~~la~~~-~~~V~lw~~~~~~-~~~~~-------------------~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd 237 (475)
|++|+|. +..|.|||+.=-. +...+ ..+|.+.|.+++|+.. .+.||+|+.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 6777766 8999999986211 11111 1157788889999874 46899999999999999
Q ss_pred CCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCC
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~D 313 (475)
+.++++..++..|...|.++.|+ +.+|++|+.|++|.+.|.|.....-.... ..+.|-.++|.+. ...++++..|
T Consensus 273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999996 58999999999999999995333322232 4577999999994 4577888899
Q ss_pred CcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCC
Q 011916 314 NQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKN 389 (475)
Q Consensus 314 g~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~ 389 (475)
|+|+-+|++.. +++.++..|.+.|.+|++++.-..++++++ .|+.+++|++..-.......+ -+...|+++.|+
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 99999999965 899999999999999999999999999976 999999999875443222211 134788888998
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceE
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
-..+++. |+..+.++|||+.+...+
T Consensus 430 ~a~~la~-GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 430 VAFTLAF-GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEe-cCccceEEEeecccChhH
Confidence 8887776 667779999999776543
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=8.2e-21 Score=175.47 Aligned_cols=191 Identities=23% Similarity=0.426 Sum_probs=160.8
Q ss_pred CCEEEEEeCCCcEEEEECCC---------------CCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 261 SRILSSGSRDRNILQHDLRV---------------SSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..+.++-+..|.|.|||+.. ....+.++.+|.++=.+|+||| ....|++|.--+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 45666667889999998852 2245778889999999999999 2336888888889999999886
Q ss_pred cee---EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC---ceeeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 325 QPT---LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG---HQLNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 325 ~~~---~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.-. ..|.+|...|..++|+|....++++|+ .|+.|+|||++.+ .++..-.+.+.|..+.|+.....|++ |
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas--G 320 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS--G 320 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee--c
Confidence 532 245679999999999999999999987 9999999999998 56666678899999999999997777 9
Q ss_pred cCCCeEEEEECCC---CceEEEecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCC
Q 011916 399 YSQNQIMVWKYPS---MAKVSTLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 399 ~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+|.+.|||+++ ++++++++.|..+|+++.|+|. ...|++++.|..|.+||+.-..
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999975 5788999999999999999994 5678888999999999997544
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-21 Score=203.25 Aligned_cols=244 Identities=23% Similarity=0.425 Sum_probs=192.5
Q ss_pred CCCCCceeEEecCCC-----CEEEEEc-CCeEEEEECCCC---c---EEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCC
Q 011916 165 LQDDFYLNLVDWSSQ-----NVLAVGL-GTCVYLWTASNS---K---VTRLCDLGPGDSVCSVQWTREG-SYISVGTNLG 231 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-----~~la~~~-~~~V~lw~~~~~---~---~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg 231 (475)
++.+...+.++|.+. .++++|. ||.|.+||...- . ++..+. .|.+.|..+.|++.+ ++||+|+.||
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCC
Confidence 345556678999862 3677766 899999998752 2 122222 689999999999955 5999999999
Q ss_pred eEEEEECCCCeeeEEec--CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccC--CEEEEEEcCCC
Q 011916 232 QVQVWDGTQCKRVRTFG--GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKS--EVCGLKWSHDD 304 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~s~~~ 304 (475)
.|.|||+.+-+.-.+.. .....|.+++|| .++|++++.+|.+.|||++. .+.+..+..|.. .+..++|+|+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCC
Confidence 99999998754444432 245789999997 48999999999999999994 455555555544 47799999965
Q ss_pred C-EEEEEeCCC---cEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C
Q 011916 305 R-ELASGGNDN---QLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-G 378 (475)
Q Consensus 305 ~-~lasg~~Dg---~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~ 378 (475)
. .|+++++|. .|.+||++. ..+++.+.+|...|.++.|++.+..++.+++ .|+.|.+||..+++.+..+.. +
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCC
Confidence 4 677776654 699999985 4567788899999999999999977777776 899999999999999999965 5
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
..+..+.|+|...-++++ .+-+|.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 679999999988866554 6789999999986553
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.8e-21 Score=202.30 Aligned_cols=248 Identities=19% Similarity=0.366 Sum_probs=200.4
Q ss_pred CCCCcEEEEEEcCCCCE----EEEEeCCCeEEEEECCCC------eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcE
Q 011916 207 GPGDSVCSVQWTREGSY----ISVGTNLGQVQVWDGTQC------KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNI 273 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~----la~g~~dg~v~iwd~~~~------~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I 273 (475)
........++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|| +++|++|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 44567889999997765 888999999999997652 3455677899999999997 5799999999999
Q ss_pred EEEECCCCCccEEE-ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecccc--ceeEEEECCCCCcE
Q 011916 274 LQHDLRVSSDYICK-LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA--AVKAIAWSPHQSSL 349 (475)
Q Consensus 274 ~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l 349 (475)
.|||+........- -....++|.+++|+. ..+.||+++.+|.+.|||++..+++..+..+.+ .+..++|+|++..-
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99999854333222 223557899999988 456889999999999999999998888877665 47799999998765
Q ss_pred EEEecC-CCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE
Q 011916 350 LASGGG-TADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426 (475)
Q Consensus 350 l~sg~G-s~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 426 (475)
++++++ ...-.|.+||++.. ..++.+ .|...|.++.|++.+..++.+ +..|++|.+|+.++++.+.++......+.
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPAQGNWCF 300 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc-ccCCCCeeEecCCCceEeeecCCCCccee
Confidence 555442 23357999998864 345555 477889999999988555554 55899999999999999999998888999
Q ss_pred EEEECCCCC-EEEEEeCCCCEEEEecCCCC
Q 011916 427 YLATSPDGQ-TIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 427 ~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.|+|... .++.++-||.|.|+.+....
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999655 78888999999999998766
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.4e-19 Score=177.17 Aligned_cols=275 Identities=19% Similarity=0.353 Sum_probs=208.7
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCC--eeeEE
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS---YISVGTNLGQVQVWDGTQC--KRVRT 246 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~---~la~g~~dg~v~iwd~~~~--~~~~~ 246 (475)
+..+|.+..++|.|.+..|.+||.....+..... +|...|+|+.|-|+.+ ++++|+.||.|.+|.++.. .++.+
T Consensus 18 ~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~-GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 18 KVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLD-GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred ccccccccceEEecCCceEEEeCcccceeEEecc-CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 3477888999999999999999998875555544 9999999999999877 8999999999999998843 44556
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC--------------------------------------------
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-------------------------------------------- 282 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~-------------------------------------------- 282 (475)
+.+|...+.|+.-......+...|+.+.+||.....
T Consensus 97 ~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 97 IQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred ecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 667666655554433333334688888888873222
Q ss_pred -----ccEEEecCccCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc-----------------e----eEE----
Q 011916 283 -----DYICKLAGHKSEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQ-----------------P----TLR---- 329 (475)
Q Consensus 283 -----~~~~~~~~h~~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~-----------------~----~~~---- 329 (475)
..+..+.+|...|.+++|...+. +||++++|..|+||.+.-+. + ...
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 11345678999999999987443 89999999999999875221 0 111
Q ss_pred ------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeee--ec-C---CCCeeEEEEcCCCCeEEE
Q 011916 330 ------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNS--VD-T---GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 330 ------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~--~~-~---~~~v~~l~~s~~~~~l~~ 395 (475)
+.+|.+.|.++.|+|.+..|+++. .|.++.+|.-.+.. =+.. +. . ........|+|+++.+++
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSAS---aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSAS---ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecc---cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 237999999999999997677754 79999999865542 2222 21 1 234788999999988887
Q ss_pred EEecCCCeEEEEECCC---CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 396 THGYSQNQIMVWKYPS---MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
-+..|..++|.... ......+.||.+.|..++|+|.|++|++.+.|.+-|+|--.
T Consensus 334 --~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 334 --HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred --ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 56788999998332 23445567899999999999999999999999999998766
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.6e-19 Score=175.64 Aligned_cols=269 Identities=16% Similarity=0.255 Sum_probs=208.5
Q ss_pred eeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCC-----
Q 011916 171 LNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS--YISVGTNLGQVQVWDGTQC----- 241 (475)
Q Consensus 171 v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~--~la~g~~dg~v~iwd~~~~----- 241 (475)
|.+++-.+ .-++.++.||+|+||.+.++..+..+.+ .+.|.||+|+|.+. .||++.... +.|.+..-|
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV 479 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh
Confidence 55555554 4566667799999999999999999864 57899999999664 555555433 444432111
Q ss_pred --------------------------------eeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCcc
Q 011916 242 --------------------------------KRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSDY 284 (475)
Q Consensus 242 --------------------------------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~ 284 (475)
+-++..-.|...|..+.|+ |++|++...+ ..|.|+++. ....
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~s 558 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKS 558 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccc
Confidence 0122333577889999995 7899988654 578999987 3333
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
..-+....+.|.++.|+|...+|++++. ..|+|||+..+..+..+......|..++.+|.|..|++ |+.|+.+..|
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~---gs~d~k~~Wf 634 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL---GSYDKKMCWF 634 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE---ecCCCeeEEE
Confidence 3445556678999999999999999887 68999999998888777777888999999999998888 4589999999
Q ss_pred ECCCC-ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC---------CCceEEEecCCCcc----eEEEE
Q 011916 365 NTSNG-HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP---------SMAKVSTLTGHSLR----VLYLA 429 (475)
Q Consensus 365 d~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~---------~~~~~~~l~~h~~~----V~~l~ 429 (475)
|+.-. ++.+.+. |...+++++|++.-..+++ |+.||.+.||.-. -.-++..+++|... |+...
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 99765 4455554 5678999999999998888 8899999988531 12456778888766 99999
Q ss_pred ECCCCCEEEEEeCCCCEEEE
Q 011916 430 TSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW 449 (475)
|+|...+|++++.||+|++|
T Consensus 713 wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCCCceEEecCCCceEEee
Confidence 99999999999999999998
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=177.95 Aligned_cols=271 Identities=18% Similarity=0.344 Sum_probs=211.1
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.++.++|-|+ .-+..+.++.+++||.+.|...+.+. +|.+.|.||+|+.||+.+|+|+.|..|.||...- ...++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 5677999997 67777889999999999999888876 9999999999999999999999999999998442 22333
Q ss_pred -CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 249 -GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 249 -~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.|...|.|+.||+ +.|++++-+ ..-+|... .+.+.+. .....|++++|..||++|+.|-.+|+|.|-+-. ++
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~--qK~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gE 164 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPE--QKSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GE 164 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh-hccccChh--hhhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CC
Confidence 6999999999996 777777643 45577654 2222222 234568999999999999999999999998644 33
Q ss_pred eeEEEe---ccccceeEEEECCCCC----cEEEEecCCCCCeEEEEECCCCceee-eecCCCCeeEEEEcCCCCeEEEEE
Q 011916 326 PTLRLT---EHTAAVKAIAWSPHQS----SLLASGGGTADRCIRFWNTSNGHQLN-SVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 326 ~~~~~~---~h~~~v~~l~~sp~~~----~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+...+. +...+|.+++|+|... .++++.. ...++.+|.+. |+.+. .-..+-..+|+.+.++|.+++.
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li-- 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL-- 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE--
Confidence 333333 3678999999998642 2333332 55666666654 44443 3345567889999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|+.++.+.+|- +.|-.+.++-.....|+.++..|++++++.|+.||+|--|++-...
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 99999999997 4577777777778899999999999999999999999999986543
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.8e-19 Score=180.29 Aligned_cols=267 Identities=19% Similarity=0.286 Sum_probs=204.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--eEE----ecCCCCceEEEEeC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKR--VRT----FGGHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~--~~~----~~~h~~~v~~l~~~ 260 (475)
+.++||++......+.. +.....|++++|+| +..+||.|+.+|.|.+||+..+.. ... ...|...++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999887433333 25678999999999 678899999999999999987655 222 23688999999992
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCCccEEEe----c-------CccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 261 ----SRILSSGSRDRNILQHDLRVSSDYICKL----A-------GHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 261 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~-------~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
+.-+++++.||.|..|+++.-..+...+ . .-...+++++|.+ +-..+++|+.+|.|+.-.....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3569999999999999987433221111 1 1123588999988 6678999999999987443322
Q ss_pred c--------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecC-CCCeeEEEEcCCCCeEE
Q 011916 325 Q--------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVDT-GSQVCNLAWSKNVNELV 394 (475)
Q Consensus 325 ~--------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~-~~~v~~l~~s~~~~~l~ 394 (475)
+ .+..+..|.+.|.++.++|.+..++.+++ |.+++||... ...++..+.. ...+.+++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 1 23355678999999999999998888885 9999999987 6666666654 44599999999988877
Q ss_pred EEEecCCCeEEEEECCC--CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPS--MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++ +..+|.|.+||+.. ..++.+...+....+.+.|+++|+.|+.|...|++.+|++......+.
T Consensus 458 ~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~ 523 (555)
T KOG1587|consen 458 AT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVPS 523 (555)
T ss_pred EE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhccC
Confidence 76 77899999999954 345555555666678888999999999999999999999976554443
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=2.9e-19 Score=176.64 Aligned_cols=290 Identities=20% Similarity=0.314 Sum_probs=227.1
Q ss_pred CCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeC---C-CCCcEEEEEEcCCCCEEEEEeCCCeE
Q 011916 162 APSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDL---G-PGDSVCSVQWTREGSYISVGTNLGQV 233 (475)
Q Consensus 162 ~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~---~-~~~~V~~v~~spdg~~la~g~~dg~v 233 (475)
+--.-++-+|..+.|+|. .+|+++.|+++.+|...+. -......+ + ......+..|+|+++.+++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 333457789999999997 5899999999999988765 33333333 2 23457888999999999999999999
Q ss_pred EEEECCC---CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC---CccEEEecCccCCEEEEEEcCCCC
Q 011916 234 QVWDGTQ---CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 234 ~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
++|..+. ......+.||...|..++|+ |.+|++.+.|.+-+++---.. -+.+.+-+-|...++|+++-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9998332 13444567999999999997 799999999999999865311 134455566888999999988777
Q ss_pred EEEEEeCCCcEEEEECCC-------------------------------------------Cc-----------------
Q 011916 306 ELASGGNDNQLLVWNQHS-------------------------------------------QQ----------------- 325 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~-------------------------------------------~~----------------- 325 (475)
.+++|.....+++|+... +.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 889999989999998531 00
Q ss_pred ----------------eeEEEeccccceeEEEECCCCCcEEEEecCC---CCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 326 ----------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT---ADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 326 ----------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs---~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
.++++.+|...|.+++.+|+++ |++++.-+ ....|++|++.+...+..+. |.-.|+.++
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 1123457899999999999999 55543211 23469999999988888664 666899999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|+|||++|++ .+.|..+.+|...... .....+.|+--|....|+||+.+++|++.|.+|+||.....
T Consensus 580 FSpdg~~LLs--vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLS--VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEE--eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999 6689999999874432 23346789999999999999999999999999999999877
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=163.89 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=184.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|.+++| +|+.|+++++|..|.+||+. .+.+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~-~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL-KGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc-CCCceeEEE
Confidence 779999999999999999999999999999999999999999999999 58999999999999999998 455666655
Q ss_pred CccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 290 GHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
...+|....|+|.. +..++.-.+..-.+-++..+. +.+-. ......+..|.+.|+++++ |+..|.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 57889999999943 344333344445555555422 22211 1112233468899997777 66899999
Q ss_pred EEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---------EEEecC--CCcceEEEE
Q 011916 363 FWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK---------VSTLTG--HSLRVLYLA 429 (475)
Q Consensus 363 iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---------~~~l~~--h~~~V~~l~ 429 (475)
++|..+.+++..+.. ...|..+.++..|+.++. .+.|..|+.|++..... ...++. ....-.+++
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 999999999988753 367999999999999999 88999999999863211 111111 122345688
Q ss_pred ECCCCCEEEEEeC-CCCEEEEecCCCCCCCCcc
Q 011916 430 TSPDGQTIVTGAG-DETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 430 ~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~~~ 461 (475)
|+.||.|++.++. -..++||.-..+...+.+.
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 9999999988765 4579999998888776653
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-19 Score=176.95 Aligned_cols=236 Identities=18% Similarity=0.319 Sum_probs=193.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CEEEEEeCCCcEEEEECCCC-
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RILSSGSRDRNILQHDLRVS- 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~- 281 (475)
+|.+.|.+|...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.|++|++ .+|+++-.+. +.|.+...+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccc
Confidence 899999999999999999999999999999999999999886 345899999964 3444443333 433332111
Q ss_pred -----------------------------------CccEEEecCccCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 011916 282 -----------------------------------SDYICKLAGHKSEVCGLKWSHDDRELASGGND---NQLLVWNQHS 323 (475)
Q Consensus 282 -----------------------------------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---g~I~iwd~~~ 323 (475)
..-+.....|...|..+.|+..|.+|++...+ ..|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 01123444577889999999999999997654 4799999987
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+...-|....+.|.++.|+|...+++++ ....|+|||+..+..++.+.++ ..|..++.+|.|..|++ |+.|+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~--gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL--GSYDK 629 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--ecCCC
Confidence 77666666677889999999999988886 5799999999998888877655 46889999999999999 89999
Q ss_pred eEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.++.||+.-. ++..++..|...|+.++|++.-.++++|+.||++.|+.
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999754 56778888999999999999999999999999998874
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=166.56 Aligned_cols=268 Identities=17% Similarity=0.271 Sum_probs=195.1
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEE--ecCCC-CceE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCKRVRT--FGGHQ-TRAG 255 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h~-~~v~ 255 (475)
++++-+.|.|++||..+++..+.+. ++...+..+.|.. ....+.+|+.||+|++||+........ +..+. .+..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 4444558999999999999888886 7788888999977 457889999999999999987655443 34555 4566
Q ss_pred EEEeC--CCEEEEEe----CCCcEEEEECCCCCccEE-EecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc--
Q 011916 256 VLAWN--SRILSSGS----RDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQ-- 325 (475)
Q Consensus 256 ~l~~~--~~~l~sgs----~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~-- 325 (475)
+++-+ ++++++|. .+-.|.+||+|...+.+. -...|...|+++.|+| +.++|++|+.||.|.++|++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 77764 57777775 467899999997766443 4567999999999999 67799999999999999998542
Q ss_pred -eeEEEeccccceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCC
Q 011916 326 -PTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNV 390 (475)
Q Consensus 326 -~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~ 390 (475)
.+...-.|...|..+.|..++. .+.+.. ......+|++..+.+...+... ..+... .+|.+
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~ 277 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGD 277 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCC
Confidence 2333445788899999998882 244432 7999999999988866554322 112222 22333
Q ss_pred CeEEEEEecCCCeEEEEECC------CCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP------SMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~------~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.-+..+.|..-|...++-+. ..+.+..+.+ |..-|.++.|...+..+.||++||.|.+|....
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 33333324435555554432 2355666776 777789999998899999999999999999643
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.3e-19 Score=165.08 Aligned_cols=245 Identities=19% Similarity=0.327 Sum_probs=190.6
Q ss_pred CCCCCceeEEecCCC------CEEEEE---c-CCeEEEEEC-CCCcEEEEeeC--CCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 165 LQDDFYLNLVDWSSQ------NVLAVG---L-GTCVYLWTA-SNSKVTRLCDL--GPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~------~~la~~---~-~~~V~lw~~-~~~~~~~~~~~--~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
..+++.|....|.+. .++|+- . +|...+.-+ ++|++.....+ +|.+.|..++|+| +...||+|+.|
T Consensus 24 CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD 103 (472)
T KOG0303|consen 24 CYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSED 103 (472)
T ss_pred hhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCC
Confidence 346777888888753 344442 2 233333322 33443332222 8999999999999 66789999999
Q ss_pred CeEEEEECCCC-------eeeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE
Q 011916 231 GQVQVWDGTQC-------KRVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 231 g~v~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 300 (475)
.+|.||.+..+ +.+..+.+|..+|.-++|++ +.|++++.|.+|.+|++. .+..+..+. |...|.++.|
T Consensus 104 ~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l~-hpd~i~S~sf 181 (472)
T KOG0303|consen 104 TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITLD-HPDMVYSMSF 181 (472)
T ss_pred ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeecC-CCCeEEEEEe
Confidence 99999998654 45677889999999999985 899999999999999998 455555555 9999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc-eeEEEECCCCCcEEEEec-CCCCCeEEEEECCCC---ceeeee
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA-VKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNG---HQLNSV 375 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~---~~~~~~ 375 (475)
+.||.+|++.+.|..|+|||.++++.+..-..|.+. -..+.|-.++. ++++|. ...++.+.+||..+- -.+..+
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 999999999999999999999999998887777653 45667888888 777753 234789999986653 345667
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
++.+.|.---|.++.+.++.+ |-.|+.|+.|.+.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 788888888888888888776 8899999999987654
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=5.7e-19 Score=172.65 Aligned_cols=121 Identities=22% Similarity=0.384 Sum_probs=98.6
Q ss_pred ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-------eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 334 TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-------LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 334 ~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...|+.+.|.|....-++.++ .||.|++|.+..+-. ...+ .|...|+.+.|+|-...++++ ...|-+|+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~-asyd~Ti~ 703 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV-ASYDSTIE 703 (1012)
T ss_pred CceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh-hhccceee
Confidence 346788999997766666654 899999999876432 2222 367789999999965544433 66799999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+||+.+++....+.+|++.|.+++|||||+.+++.+.||+|++|+-..++..
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998766543
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=169.55 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=201.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEECCCCCc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~~~~~~ 283 (475)
.+.|++|.|+|....|++++.||+++||.+.. ...+..+.-...+|.+.+| +|+ .++++++...++.||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999998763 4556666666778888877 566 899999999999999974332
Q ss_pred -cEEEecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 284 -YICKLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 284 -~~~~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+..+.++. ..+.....++++++||..|..|.|.+....+++.+..++ -.+.|..++|+.+++.|+++|+ +|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~---~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG---TGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC---CceE
Confidence 223334443 357788899999999999999999999999999888876 4788999999999999999874 8999
Q ss_pred EEEECCCCceeeeecCCCCe--eEEEEcCCCCeEEEEEecCCCeEEEEECCC------CceEEEecCCCcceEEEEECCC
Q 011916 362 RFWNTSNGHQLNSVDTGSQV--CNLAWSKNVNELVSTHGYSQNQIMVWKYPS------MAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~v--~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~------~~~~~~l~~h~~~V~~l~~spd 433 (475)
.+||++...+++.+...+.| +.++.++++.+|++ |+..|.|.|||..+ .+++..+..-...|+.|+|++|
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999999999998766655 55777799999999 99999999999753 4667777777888999999999
Q ss_pred CCEEEEEeC--CCCEEEEecCCCCCCCC
Q 011916 434 GQTIVTGAG--DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 434 g~~l~s~s~--Dg~I~iW~~~~~~~~~~ 459 (475)
+++||.++. +..+|+-.+..-.....
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeecc
Confidence 999988765 67888888765554433
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=158.39 Aligned_cols=268 Identities=19% Similarity=0.316 Sum_probs=208.5
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCc------------EEEEeeCCCCCcEEEEEEc-------CCCCEEEEEeC
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSK------------VTRLCDLGPGDSVCSVQWT-------REGSYISVGTN 229 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~------------~~~~~~~~~~~~V~~v~~s-------pdg~~la~g~~ 229 (475)
+..+.|+|+ -+|+-+.++.+.+|++...- ....+.....+.|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 445889998 37888889999999985321 1122222446788888886 56789999999
Q ss_pred CCeEEEEECCCCeeeEEecC--CCC---ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE--EE-----ecCccCCE
Q 011916 230 LGQVQVWDGTQCKRVRTFGG--HQT---RAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI--CK-----LAGHKSEV 295 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~--h~~---~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~--~~-----~~~h~~~V 295 (475)
+.-|++||.-+|+....+.+ |.. ...+++| +|.+|++| ....|+++|+...+... .. ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998887763 443 4457888 46777765 56899999994344321 11 22336779
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceee
Q 011916 296 CGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLN 373 (475)
Q Consensus 296 ~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~ 373 (475)
.+++|+| +...+|+|+....+-||.-..+.+++.+.+|.+.|+.+.|+++|..|++-+ -.|..|..||++.- .++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEeehhccchhh
Confidence 9999999 566999999999999999999999999999999999999999999776643 37899999999864 3444
Q ss_pred eec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 374 SVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 374 ~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.+. ...+-.-+...|+++.|++ |..+|.|++||+.. +..+..+..|...|+.++++|--.+++|++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 442 2234445667899999999 99999999999988 66688888899999999999998889888765
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=4.6e-19 Score=165.53 Aligned_cols=247 Identities=18% Similarity=0.314 Sum_probs=188.5
Q ss_pred CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEE
Q 011916 208 PGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQC---------KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQ 275 (475)
Q Consensus 208 ~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~---------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~i 275 (475)
...+|..+.|.++.. .||+|+.|..|+||.+..+ +.+..+..|...|+++.|+ |++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 457899999998765 9999999999999987543 2234567899999999996 579999999999999
Q ss_pred EECC--------C-----C--CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEE
Q 011916 276 HDLR--------V-----S--SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 276 wd~~--------~-----~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l 340 (475)
|... . . ......+.+|..+|..++|+++++++++++.|+.+++||+..|..+..+.+|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 1 1 12345678899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------------C----CCCeeEEEEcCCCCeEEEE
Q 011916 341 AWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------------------T----GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------------------~----~~~v~~l~~s~~~~~l~~~ 396 (475)
+|.|.+++++.-+ .|+..+.+.+...+.+..+. + ..-...++|+|+|..|++-
T Consensus 172 awDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 172 AWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 9999999776654 57766666654332222111 0 0113344566666554431
Q ss_pred E-------------------------------------------------------------------ecCCCeEEEEEC
Q 011916 397 H-------------------------------------------------------------------GYSQNQIMVWKY 409 (475)
Q Consensus 397 ~-------------------------------------------------------------------g~~dg~I~iwd~ 409 (475)
. -...+.|+|||.
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 1 012456677777
Q ss_pred CCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 410 PSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 410 ~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
++..++..+.+ |-..|+.++|++||.+|+..+.||...+-.+++.+.-
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 77666666654 8889999999999999999999999888877766544
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5e-19 Score=167.46 Aligned_cols=243 Identities=19% Similarity=0.251 Sum_probs=194.9
Q ss_pred CCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCC----eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEEC
Q 011916 208 PGDSVCSVQWTREG--SYISVGTNLGQVQVWDGTQC----KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 208 ~~~~V~~v~~spdg--~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~ 278 (475)
+.+.|++++|+|.. +++|+|...|.|-+||+.+. ..+..+..|...|.++.|+ ...+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 46899999999944 68999999999999999532 3345677899999999995 479999999999999999
Q ss_pred CCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 279 RVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 279 ~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
+... ..+..+......++++.|+.+...++.++.=|...+||+++... ...+.-|...|..|+++|-..+++++++
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s-- 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS-- 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc--
Confidence 7322 22333333556688899999888888888878999999997655 5566678889999999999999999987
Q ss_pred CCCeEEEEECCCCc-----eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceEEEecCCCc----
Q 011916 357 ADRCIRFWNTSNGH-----QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP----SMAKVSTLTGHSL---- 423 (475)
Q Consensus 357 ~d~~I~iwd~~~~~-----~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~---- 423 (475)
.|++.+|||++.-. .+..+.|...|.+..|||.+..|++ .+.|+.|+|||.. ...+..++. |..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T--T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R 419 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT--TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGR 419 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe--eccCCceEEeecccccccCCccceee-ccCcccc
Confidence 99999999997532 3666789999999999999999888 5689999999983 344444443 322
Q ss_pred --ceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 424 --RVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 424 --~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
......|.||..++++|..-..|-|+|-..++
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 13456899999999999888888888877666
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=3.8e-18 Score=153.01 Aligned_cols=276 Identities=15% Similarity=0.277 Sum_probs=203.1
Q ss_pred CCCceeEEecCC----CCEEEEEc-----CCeEEEEE--CCCCcEEEEeeCCCCCcEEEEEEcCCC-----CEEEEEeCC
Q 011916 167 DDFYLNLVDWSS----QNVLAVGL-----GTCVYLWT--ASNSKVTRLCDLGPGDSVCSVQWTREG-----SYISVGTNL 230 (475)
Q Consensus 167 ~d~~v~~l~ws~----~~~la~~~-----~~~V~lw~--~~~~~~~~~~~~~~~~~V~~v~~spdg-----~~la~g~~d 230 (475)
..+.+.+++|+. +..+|+|. .+.|.|-. .++++.+....+.|.-+++.+.|.|+. ++||+.+.
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D- 121 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD- 121 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC-
Confidence 345677799993 44566654 35555554 456676666667889999999999976 35666544
Q ss_pred CeEEEEECCCC--eee--EEe-----cCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC--CccEEEecCccCCEE
Q 011916 231 GQVQVWDGTQC--KRV--RTF-----GGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS--SDYICKLAGHKSEVC 296 (475)
Q Consensus 231 g~v~iwd~~~~--~~~--~~~-----~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~~~V~ 296 (475)
.+++|.+... +.. ..+ ..+..+++++.|| +++|.+++-|-+..|||++.. +.....+.+|..+|.
T Consensus 122 -~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 122 -FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred -eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 7999998632 111 111 2466789999995 699999999999999999963 345677889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-e
Q 011916 297 GLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-Q 371 (475)
Q Consensus 297 ~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~ 371 (475)
.|+|...+ +.+|+.|.||.|+++|++..+.-..+.+ ...+...++|++...+++++-. .....|.|.|++... .
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTP 279 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcc
Confidence 99999855 4899999999999999997654333322 2567889999998888777763 356789999998643 4
Q ss_pred eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 372 LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 372 ~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
+..+ .|.+.|..++|.|....-+++ +++|.++.+||+.+.-. +..+. ..+.|+.+.|++ .+..|+.+..
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~- 356 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG- 356 (364)
T ss_pred eehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-
Confidence 4444 588999999999988777666 55899999999976533 22222 567899999996 5667777654
Q ss_pred CCEEE
Q 011916 444 ETLRF 448 (475)
Q Consensus 444 g~I~i 448 (475)
..+.+
T Consensus 357 kklei 361 (364)
T KOG0290|consen 357 KKLEI 361 (364)
T ss_pred CeeeE
Confidence 44444
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.1e-16 Score=159.85 Aligned_cols=281 Identities=29% Similarity=0.534 Sum_probs=222.4
Q ss_pred CCceeEEecCCCC-EEEEEc--CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQN-VLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~--~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~ 243 (475)
.-.+..++|+++. .++.+. ++.+++|+...+....... +|...|.+++|+|++. .++.++.|+.|++||...+..
T Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence 3456689999874 444443 8999999999977777765 5889999999999998 555558999999999888888
Q ss_pred eE-EecCCCCce-EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VR-TFGGHQTRA-GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~-~~~~h~~~v-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
+. .+.+|...+ ..+..++..+++++.|+.+++|+++........+..|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred EeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 87 688888874 3333356788899999999999998555434444678999999999998888888999999999999
Q ss_pred CCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 322 HSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 322 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.......... .|...+..+.|.+++..++..+. .|+.+.+|++..............+..+.+.+ . ......+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEec
Confidence 9887766665 78888999999433244555433 67999999998887444444444488999999 6 55443357
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 889999999998888777765547899999999999999999999999999987
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.3e-17 Score=163.94 Aligned_cols=267 Identities=12% Similarity=0.147 Sum_probs=179.5
Q ss_pred EEEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Cee--eEEecCCCCceEE
Q 011916 182 LAVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQ-CKR--VRTFGGHQTRAGV 256 (475)
Q Consensus 182 la~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~-~~~--~~~~~~h~~~v~~ 256 (475)
++.+.++.|++|++.+ ++...+..+...+....++++|++++|++++. ++.|.+|++.. ++. +.... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 3445689999999964 44333333344566788999999999887754 78899999863 332 22222 2234567
Q ss_pred EEeC--CCEEEEEe-CCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEE
Q 011916 257 LAWN--SRILSSGS-RDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 257 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~~~~ 329 (475)
++++ +++|++++ .++.|.+|++...+. .+..+ .+.....+++++|+++++++++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 7775 66777665 488999999974332 22222 2334567789999999886554 568999999976332211
Q ss_pred -----Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cc--eeeeecC-------CCCeeEEEEcCCCCe
Q 011916 330 -----LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GH--QLNSVDT-------GSQVCNLAWSKNVNE 392 (475)
Q Consensus 330 -----~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~--~~~~~~~-------~~~v~~l~~s~~~~~ 392 (475)
.. ........++|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 12334678999999998888754 589999999973 33 2333321 112346889999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecCCC---cceEEEEECCCCCEEEEEeC-CCCEEEEecCC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---LRVLYLATSPDGQTIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~ 453 (475)
++++ ...++.|.+|++.......++.++. .....+.++|||++|+++.. +++|.+|+++.
T Consensus 242 lyv~-~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 242 LYAC-DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEe-cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9984 3457899999986543222222221 24567899999999998775 89999999864
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=3.3e-19 Score=174.79 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=181.4
Q ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEECCCCee------eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC
Q 011916 213 CSVQWTR---EGSYISVGTNLGQVQVWDGTQCKR------VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 213 ~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~------~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.+..|++ ....||++.+||.|.++|...... +.....|...|..+.|- ...|++++.|.++++||+. .
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-T 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-c
Confidence 3456655 346899999999999999765432 34556899999999994 4789999999999999998 4
Q ss_pred CccEEE--ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc--------------------e-------eEEEe
Q 011916 282 SDYICK--LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQ--------------------P-------TLRLT 331 (475)
Q Consensus 282 ~~~~~~--~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~--------------------~-------~~~~~ 331 (475)
...+.. +.+|.+.|.+++|.+ +...|++|+.||.|.|||++-.. + +....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 444444 889999999999999 55689999999999999987321 1 11112
Q ss_pred ccccceeE---EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---------C---CCCeeEEEEcCCCCeEEEE
Q 011916 332 EHTAAVKA---IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------T---GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 332 ~h~~~v~~---l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------~---~~~v~~l~~s~~~~~l~~~ 396 (475)
.+...|.+ +.+..|...|+.+|+ .|+.|+|||+++.......+ + ...+.++.....|.+|++
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A- 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA- 288 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-
Confidence 24444544 555567675666654 79999999999765543321 1 235788888899999999
Q ss_pred EecCCCeEEEEECCCC--ceEEEecCCCcce--EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 397 HGYSQNQIMVWKYPSM--AKVSTLTGHSLRV--LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V--~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.+.|+.|++|++.+. .++..+.++...- ..-..+||+.+|++|+.|+..++|.+..........
T Consensus 289 -sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 289 -SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred -EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 667999999999765 3455555543221 122468999999999999999999999887766543
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=9.5e-17 Score=160.20 Aligned_cols=281 Identities=29% Similarity=0.490 Sum_probs=219.7
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQW-TREGS-YISVGTN-LGQVQVWDGTQ- 240 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~-spdg~-~la~g~~-dg~v~iwd~~~- 240 (475)
...+..+.+.+. .++..+.++.+.+|+...+. ....+...+...+..+.+ ++++. +++..+. |+.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 344566666654 45555669999999999886 444443222246777777 88887 5555445 89999999998
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQL 316 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I 316 (475)
......+..|...|..++|. +..+++++. |+.+.+|++. ....+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 88888999999999999994 467888875 9999999998 4667778888999999999999998 55555999999
Q ss_pred EEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeE
Q 011916 317 LVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 317 ~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l 393 (475)
++||...+..+. .+..|...+ ...|+|++..++ +++ .|+.+++|++..... +..+ .+...+.++.|.|++..+
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLA-SGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCCEEE-Eec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 999998777777 577788775 448999995444 544 899999999987665 4444 457889999999988888
Q ss_pred EEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCCCC
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFPSL 455 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~~~ 455 (475)
++ +..++.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 300 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 300 AS--GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EE--eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88 5556889999998887777665 788889999994343566666 688999999998877
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=2.7e-18 Score=156.02 Aligned_cols=241 Identities=19% Similarity=0.352 Sum_probs=183.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------eeeEEec-CCCCceEEEEeC---------CCEEEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQC------------KRVRTFG-GHQTRAGVLAWN---------SRILSSG 267 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~------------~~~~~~~-~h~~~v~~l~~~---------~~~l~sg 267 (475)
.......|+|||..|++-+.|..+.+|++... +...++. .....|...+|- ..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 44557899999999999999999999997421 1111222 234567888881 3789999
Q ss_pred eCCCcEEEEECCCCCccEEEecC--ccC---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCce--eEEEe-----ccc
Q 011916 268 SRDRNILQHDLRVSSDYICKLAG--HKS---EVCGLKWSHDDRELASGGNDNQLLVWNQ-HSQQP--TLRLT-----EHT 334 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~--h~~---~V~~l~~s~~~~~lasg~~Dg~I~iwd~-~~~~~--~~~~~-----~h~ 334 (475)
+++.-|++||.- .++....+.+ |.. ...+++|+|||.+|+.|.. ..|+++|+ +.|+. +.... +..
T Consensus 130 sr~~PIh~wdaf-tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAF-TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeecc-ccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999997 4554444433 433 3468999999999998765 79999999 55532 22211 236
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-C
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-M 412 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~ 412 (475)
+-+.+++|+|....++++|+ ....+-||.-..+.++..+ .+++.|+.++|.++|+.|++. +..+-.|..||++. .
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSR 284 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhcc
Confidence 77899999999998899876 8999999998888888776 578899999999999999983 33577899999975 4
Q ss_pred ceEEEecCCCc-c--eEEEEECCCCCEEEEEeCCCCEEEEecCC-CC
Q 011916 413 AKVSTLTGHSL-R--VLYLATSPDGQTIVTGAGDETLRFWNVFP-SL 455 (475)
Q Consensus 413 ~~~~~l~~h~~-~--V~~l~~spdg~~l~s~s~Dg~I~iW~~~~-~~ 455 (475)
..+..+..|.+ . -......|+|++|++|+.||.|++||+.. +.
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 56677777755 2 22345578999999999999999999987 44
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.5e-18 Score=159.03 Aligned_cols=229 Identities=20% Similarity=0.359 Sum_probs=176.5
Q ss_pred CCCEEEEEe---CCCeEEEEECC-CCee---eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC------c
Q 011916 220 EGSYISVGT---NLGQVQVWDGT-QCKR---VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS------D 283 (475)
Q Consensus 220 dg~~la~g~---~dg~v~iwd~~-~~~~---~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~ 283 (475)
+.++||+.. ..|...+.-+. +|+. .-.+.+|.+.|..++|+ .+.|++|+.|.+|.||++...+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 455665532 22344444332 3332 33466999999999994 5899999999999999996433 4
Q ss_pred cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+..+.+|...|.-++|+| -.+.|++++.|++|.+|++.+++.+.++. |...|.++.|+-+|..+++++ .|..|+
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvR 198 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVR 198 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec---ccceeE
Confidence 5788999999999999999 45689999999999999999999988887 999999999999999666655 899999
Q ss_pred EEECCCCceeeeec-C-CCCeeEEEEcCCCCeEEEEEec---CCCeEEEEECCCCceE---EEecCCCcceEEEEECCCC
Q 011916 363 FWNTSNGHQLNSVD-T-GSQVCNLAWSKNVNELVSTHGY---SQNQIMVWKYPSMAKV---STLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~-~~~v~~l~~s~~~~~l~~~~g~---~dg~I~iwd~~~~~~~---~~l~~h~~~V~~l~~spdg 434 (475)
|||.++++.+..-. | +..-....|-.+|. ++++ |+ ++.++-+||..+.+.- .++. ....|.---|.+|.
T Consensus 199 v~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTT-GFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDT 275 (472)
T ss_pred EEcCCCCcEeeecccccCCCcceeEEeccCc-eeee-ccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCC
Confidence 99999999988763 2 34566677888888 4443 65 4678999998776543 3333 34457767788998
Q ss_pred CEEEEEe-CCCCEEEEecCCCC
Q 011916 435 QTIVTGA-GDETLRFWNVFPSL 455 (475)
Q Consensus 435 ~~l~s~s-~Dg~I~iW~~~~~~ 455 (475)
..|+.++ +|+.||.|.+....
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CEEEEEecCCcceEEEEecCCC
Confidence 8777655 69999999998766
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.9e-18 Score=147.84 Aligned_cols=244 Identities=16% Similarity=0.248 Sum_probs=185.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQ----------CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~ 280 (475)
.|.+-+|+|.+++|++|..+|.|.+..+.. ...+...++|.++|..++|...+|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 456668999999999999999999998753 23445567999999999999888888876 9999998763
Q ss_pred CCccE-------EEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCc
Q 011916 281 SSDYI-------CKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 281 ~~~~~-------~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
..+.. .....|. -+|+++-..|..+-++.++.|+.++-||+++|+...++++|.+.|.+++--.....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 22210 1111222 46899999998888888889999999999999999999999999999998544444
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC-----------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG-----------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
++. |.+||++++||+++++++..++.. ..|.+++ -+...+++ | ....+.+|.+++.+....
T Consensus 171 ils---G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvC--G-gGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 171 ILS---GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVC--G-GGPKLSLWHLRSSESTCV 242 (325)
T ss_pred eee---cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEe--c-CCCceeEEeccCCCceEE
Confidence 555 449999999999999999888522 2344444 44557776 4 356799999999988877
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcc
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
+. -..+|..+.|- ...+++++....|.-|.+..-...........+
T Consensus 243 fp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 243 FP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTAC 288 (325)
T ss_pred Ee-cccceeEeeee--cceEEEeccccceeeeeeccEEEEeccCCccce
Confidence 75 45567788884 447788888888999988766555554444433
No 170
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.2e-17 Score=149.37 Aligned_cols=234 Identities=16% Similarity=0.339 Sum_probs=175.4
Q ss_pred eeEEecC--CCCEEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC---
Q 011916 171 LNLVDWS--SQNVLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT--- 239 (475)
Q Consensus 171 v~~l~ws--~~~~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~--- 239 (475)
++++.|. +.++++++.|+.|.|||..... +..... .|.+.|..|.|.+ -|+.+|+++.|+++.||.-.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 5556665 5689999999999999964432 233333 6899999999976 68999999999999999842
Q ss_pred ------CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc-----EEEe-------cCccCCEEE
Q 011916 240 ------QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY-----ICKL-------AGHKSEVCG 297 (475)
Q Consensus 240 ------~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~-------~~h~~~V~~ 297 (475)
......++......|+.+.|. |-.|++++.||.++||+.-..... ...+ ..+...-.|
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 112345666778899999995 568999999999999987533221 1112 246677889
Q ss_pred EEEcC---CCCEEEEEeCC-----CcEEEEECCCCc----eeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEE
Q 011916 298 LKWSH---DDRELASGGND-----NQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIR 362 (475)
Q Consensus 298 l~~s~---~~~~lasg~~D-----g~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~ 362 (475)
+.|++ ...+||+|+.+ +.++||...... .+.++.+|..+|++|+|.|.- .++++++. .|| |+
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~ 251 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VR 251 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EE
Confidence 99998 34578888765 588999876432 345677899999999999963 35777765 899 99
Q ss_pred EEECCCCc--------------------eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 363 FWNTSNGH--------------------QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 363 iwd~~~~~--------------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
||++.... .+..+ +|.++|..+.|+-.|..|.+ .+.||.|++|...
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS--tGdDG~VRLWkan 318 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS--TGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee--cCCCceeeehhhh
Confidence 99987311 12222 47789999999999999988 6689999999863
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.7e-19 Score=169.89 Aligned_cols=248 Identities=15% Similarity=0.202 Sum_probs=194.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQH 276 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iw 276 (475)
.|.+.|..++|.+....|++++.||+|.+|+++. .+++.+|.+|.++|.|++. +++.+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 6778999999999999999999999999999832 3577889999999999998 68999999999999999
Q ss_pred ECCCCC---------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec--cccceeEEEECCC
Q 011916 277 DLRVSS---------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPH 345 (475)
Q Consensus 277 d~~~~~---------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~ 345 (475)
++.... .....+.+|...|..+++|.....|++++.||+++.|+.....+ .+|.. ..+.-..+.+-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 664221 23456889999999999999999999999999999999887666 33332 2233355555443
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
......+.. .-+.--+++...+..+..+.. ...+..+.++|.+...+. +..++.|+++|..++..+..
T Consensus 451 ~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~--~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 451 RPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT--AHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred hhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe--cccCCceecccccccccchh
Confidence 322222111 233333444444444444421 135778899999988888 77999999999999999999
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
...|...++++++.|+|-+|++++.|+.+++|++....+...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999999999999999999999987665543
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=5.2e-18 Score=163.25 Aligned_cols=256 Identities=15% Similarity=0.264 Sum_probs=194.2
Q ss_pred eEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCee
Q 011916 172 NLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-------EGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-------dg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+++.|+.+ .++.++.|..+.+|+-.+........+..+.--+.+-.-+ ....|++++.||.+.|.+ ..++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rV 96 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARV 96 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchh
Confidence 58999876 7888888888888765554433333322222112221111 235799999999999987 66788
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+..|.+.+.+-.|+ |.-|+++++||.|++|.-. +.....+......|.|++|.|+.+.++.+.. +.+.|=.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeec
Confidence 88899999999999995 7899999999999999864 4444445556778999999998877666544 57888888
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.....+...+.|.+-|.++.|++... ++++|| +|-..++||.........-.+..+|++++|.|+ +.+++ | +-
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v--~-S~ 246 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSN-IIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL--W-SY 246 (737)
T ss_pred ccccceeEEeccCcEEEEeecCcccc-ceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceee--e-ee
Confidence 87777888999999999999999887 788877 999999999876666666678899999999999 44443 3 22
Q ss_pred CeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+.+++ -+...+.|..++||+||..++.|+..|.|.+=
T Consensus 247 nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 247 NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 33331 12356789999999999999999999987653
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3e-18 Score=151.81 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=200.2
Q ss_pred CCCCceeccCCCCCCCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 153 PKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 153 ~~~p~~~l~~p~~~~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
|..|+-+|. .+.-.++++.|..+ .++++...|.|++|.+.+......+++.+...|+.+.-.|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLR----p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLR----PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEec----cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 344566665 34455777888765 77888889999999999998888887667889999999887 5688888999
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCC-cEEEEECCC--------CCc--cEEE----ecCccCCEE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDR-NILQHDLRV--------SSD--YICK----LAGHKSEVC 296 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg-~I~iwd~~~--------~~~--~~~~----~~~h~~~V~ 296 (475)
.+.+|++..+..+.. |.-.+.++.|...-+...+... ....++-+. .+. .+.. -.+..+.+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 999999887554433 3334444444222222221111 111121111 001 1111 112345677
Q ss_pred EEEEcC-CCC--EEEEEeCCCcEEEEECCCCcee----------EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 297 GLKWSH-DDR--ELASGGNDNQLLVWNQHSQQPT----------LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 297 ~l~~s~-~~~--~lasg~~Dg~I~iwd~~~~~~~----------~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..|.. ++. +|+.|.++|.+.+||+.++..+ .....|..+|.++.+.+.-..= ++| ..+..+..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isg--ga~dkl~~ 231 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISG--GADDKLVM 231 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCC--Ccccccee
Confidence 777544 233 5677889999999999987433 3334588999999998643322 233 37888889
Q ss_pred EECCC--Cceee--eec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 364 WNTSN--GHQLN--SVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 364 wd~~~--~~~~~--~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
|++.. +.+.. .+. ..-.+..+.+-||++.+++ ++-|+.|+||..+++.+++.++.|.+.|.+++|+||...+|
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlAT--AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILAT--AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEee--cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 98764 33221 121 3345788999999999999 66899999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEecC
Q 011916 439 TGAGDETLRFWNVF 452 (475)
Q Consensus 439 s~s~Dg~I~iW~~~ 452 (475)
.++.|+.|.+|++.
T Consensus 310 aaskD~rISLWkLY 323 (323)
T KOG0322|consen 310 AASKDARISLWKLY 323 (323)
T ss_pred hccCCceEEeeecC
Confidence 99999999999974
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=148.73 Aligned_cols=265 Identities=18% Similarity=0.270 Sum_probs=197.3
Q ss_pred CCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCC-------CeEEEEECCCC---------eeeEEe
Q 011916 187 GTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNL-------GQVQVWDGTQC---------KRVRTF 247 (475)
Q Consensus 187 ~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~d-------g~v~iwd~~~~---------~~~~~~ 247 (475)
++.|.+.+++.+ .+....-..+.+.|..++-+| +.+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 567777766544 333222236789999999999 55677776553 23679987542 233344
Q ss_pred c-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec-----CccCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011916 248 G-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA-----GHKSEVCGLKWSH--DDRELASGGNDNQLL 317 (475)
Q Consensus 248 ~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~--~~~~lasg~~Dg~I~ 317 (475)
. .+-+.|.|+.|. +..+++-. |..|.+|++....+.+..+. .|....++-+|+| +++.+++.+ |+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence 3 455689999994 56666665 88999999986555333322 3566788899999 788888765 68999
Q ss_pred EEECCCCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEE
Q 011916 318 VWNQHSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 318 iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~ 394 (475)
.||+++.+....+. .|...|..+.|+|+..++++++| .|+.|+|||++.- .++..+ .|...|.++.|+|....|+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999888776665 48888999999999999999998 9999999999864 455555 4678899999999888777
Q ss_pred EEEecCCCeEEEEECCCC-----------------------------ceEEEecCCCcceEEEEECC-CCCEEEEEeCCC
Q 011916 395 STHGYSQNQIMVWKYPSM-----------------------------AKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDE 444 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg 444 (475)
.+ |++|..|.+|-..+- ..+.++..|...|++++||. |--.+|+-+.||
T Consensus 275 Ls-~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 275 LS-GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred Ee-cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 66 778999998865311 12446677999999999987 555678889999
Q ss_pred CEEEEecCCCCC
Q 011916 445 TLRFWNVFPSLK 456 (475)
Q Consensus 445 ~I~iW~~~~~~~ 456 (475)
.+.|=++....+
T Consensus 354 RviIs~V~r~~k 365 (370)
T KOG1007|consen 354 RVIISSVPRFLK 365 (370)
T ss_pred eEEeecCChhhh
Confidence 999877765443
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.8e-18 Score=154.14 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=154.0
Q ss_pred EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE---EEecCccCCEEEEEEcCCCCEEE-EEeCCCcEEE
Q 011916 245 RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI---CKLAGHKSEVCGLKWSHDDRELA-SGGNDNQLLV 318 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~~~~~la-sg~~Dg~I~i 318 (475)
..+++|...|++++| +|..|++++.|+.|++|+++.-.... ....-.-+..+.+.|.||-+-++ +.-..+++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 357799999999999 68999999999999999997321110 01111123467899999877554 4455668999
Q ss_pred EECCCCc---eeE---------EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEE
Q 011916 319 WNQHSQQ---PTL---------RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLA 385 (475)
Q Consensus 319 wd~~~~~---~~~---------~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~ 385 (475)
|.+...+ ... .-..|...+..+-....+.+|+. ++ .|..|.+|+++ |+.+..+++. ..-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-AS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ec--CCCcEEEEecC-Cceeeeecccccccccee
Confidence 9875321 111 11236677777888777775554 43 89999999998 9999998754 5677789
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECC--------CCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYP--------SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~--------~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.+|+|++++++ .-.-.|++|..- .-..+..++||...|+.++|+++.+.++|.+.||+++|||++-.
T Consensus 236 vSP~GRFia~~--gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 236 VSPDGRFIAVS--GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eCCCCcEEEEe--cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 99999999984 445679999862 23457789999999999999999999999999999999998743
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=9.4e-18 Score=150.53 Aligned_cols=231 Identities=19% Similarity=0.343 Sum_probs=178.1
Q ss_pred CCCCCCCceeEEecCCCC-----EEEEEcCCeEEEEECCC--CcEEEEeeC------CCCCcEEEEEEcC-CCCEEEEEe
Q 011916 163 PSLQDDFYLNLVDWSSQN-----VLAVGLGTCVYLWTASN--SKVTRLCDL------GPGDSVCSVQWTR-EGSYISVGT 228 (475)
Q Consensus 163 p~~~~d~~v~~l~ws~~~-----~la~~~~~~V~lw~~~~--~~~~~~~~~------~~~~~V~~v~~sp-dg~~la~g~ 228 (475)
+.+...+.++.+-|.|+. -+.++.+..++||.+.. .++.....+ .+..++++..|+. +-++|.+.+
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 335566778889998863 24556677999999884 332221111 3567899999998 778999999
Q ss_pred CCCeEEEEECCCCe---eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCc--cCCEEEEEE
Q 011916 229 NLGQVQVWDGTQCK---RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGH--KSEVCGLKW 300 (475)
Q Consensus 229 ~dg~v~iwd~~~~~---~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~ 300 (475)
-|-+..|||++++. ....+-.|...|..++|. -+.+++.+.||.++++|+|.-.+....+..- ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999863 355677999999999994 3799999999999999999655544444332 457888999
Q ss_pred cC-CCCEEEEEeCC-CcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------e
Q 011916 301 SH-DDRELASGGND-NQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------Q 371 (475)
Q Consensus 301 s~-~~~~lasg~~D-g~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------~ 371 (475)
++ |-+++|+-..| ..|.|.|++.. .++..+.+|.+.|++|+|.|+...-++++| .|....+||+...- +
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCCCc
Confidence 98 56788876554 57999999954 578899999999999999999998899887 89999999997532 2
Q ss_pred eeeecCCCCeeEEEEcCC-CCeEEE
Q 011916 372 LNSVDTGSQVCNLAWSKN-VNELVS 395 (475)
Q Consensus 372 ~~~~~~~~~v~~l~~s~~-~~~l~~ 395 (475)
+.....++.|..+.|++. ...+++
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEE
Confidence 333456788999999964 455555
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=4.4e-16 Score=144.29 Aligned_cols=238 Identities=13% Similarity=0.239 Sum_probs=187.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCc--EEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRN--ILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~--I~iwd~~~~~~~~~ 286 (475)
...+..+.|+.+...|.+|+.|| .++|..+..............|..+-|+..+++..+.+.. +++++.+ ....+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~K-k~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFK-KKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcc-cCceEE
Confidence 34567777999999999999998 6788776554433333344567778888888888876544 8888887 333333
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.+. ...+|.++.++.+ .|+++-.+ .|+|||+++.+.++++.. +...+.++++++.+.+++.-++ ...|.|.+
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~GdV~l 157 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGDVVL 157 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-CCCceEEE
Confidence 333 4567999998643 66666654 499999999999887754 4556777777777777777654 56799999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEecCCC--cceEEEEECCCCCEEEE
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPSMAKVSTLTGHS--LRVLYLATSPDGQTIVT 439 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~l~s 439 (475)
||+.+-+.+..+. |.+.+.+++|+++|..|++ +++.|+ |+||.+++++++.++.... ..|.+++|++|+++|++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llAT--ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLAT--ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEE--eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999999988885 7899999999999999999 666775 7999999999999997543 45899999999999999
Q ss_pred EeCCCCEEEEecCCCC
Q 011916 440 GAGDETLRFWNVFPSL 455 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~ 455 (475)
.+..++|.+|++....
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999998766
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=148.70 Aligned_cols=195 Identities=23% Similarity=0.320 Sum_probs=161.5
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcE-EEEee----CCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKV-TRLCD----LGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~-~~~~~----~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~ 241 (475)
.++|+.|.|+ .-+++-.++.|.+|+++.+.. ..... .++....++-+|+| +|+.+++.+ |++++.||+.+.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence 6899999997 455555699999999988765 22221 14456788999999 788777755 589999999998
Q ss_pred eeeEEec-CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcE
Q 011916 242 KRVRTFG-GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQL 316 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I 316 (475)
++...+. .|...|..+.||+ .+|++|+.||.|++||.|.....++.+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 8777665 7889999999986 68999999999999999998999999999999999999999 56688999999999
Q ss_pred EEEECCCC-----------------------------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 317 LVWNQHSQ-----------------------------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 317 ~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
.+|-...- ..+.++..|...|.+++|+.-..+++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 99975321 123467789999999999999999999976 99999886654
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=7.6e-17 Score=147.05 Aligned_cols=242 Identities=14% Similarity=0.282 Sum_probs=179.6
Q ss_pred CCCCcEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCe---eeEEec--CCCCceEEEEe----C--CCEEEEEeCC
Q 011916 207 GPGDSVCSVQWTR----E-GSYISVGTNLGQVQVWDGTQCK---RVRTFG--GHQTRAGVLAW----N--SRILSSGSRD 270 (475)
Q Consensus 207 ~~~~~V~~v~~sp----d-g~~la~g~~dg~v~iwd~~~~~---~~~~~~--~h~~~v~~l~~----~--~~~l~sgs~d 270 (475)
+|+.+|..++|++ + -..+|+.+. ..+.+|...... .++.+. .|......++| + ..++++|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 7788999999985 2 245555555 578999876443 333332 46777888888 1 3588999999
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCC
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~ 346 (475)
|.|+|.|+. ..+....+.+|...|..|.++|+ .+++++++.|..|++|++++..++..|. +|.+.|.++.|+++|
T Consensus 115 GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 115 GVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred eEEEEEecc-hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 999999998 67888899999999999999995 4799999999999999999999998875 499999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeeEEEEcCCCCeEEEEE
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVD-----------------------------TGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~~~~ 397 (475)
.+++.+| .|..|++|++...+....++ |...|-|+.|- |+++++
T Consensus 194 d~i~ScG---mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS-- 266 (385)
T KOG1034|consen 194 DRIASCG---MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS-- 266 (385)
T ss_pred CeeeccC---CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee--
Confidence 9655544 89999999998433221111 22233344443 456666
Q ss_pred ecCCCeEEEEECCCC--------------ceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 398 GYSQNQIMVWKYPSM--------------AKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 398 g~~dg~I~iwd~~~~--------------~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
-+-+|.|..|..... ..+.++.-....|+.+.| .+-++.||.|...|.|.+||+...+..
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 455789999987211 123344444556666655 556889999999999999999987764
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.8e-16 Score=163.38 Aligned_cols=277 Identities=16% Similarity=0.221 Sum_probs=198.8
Q ss_pred EecCC-CCEEEEEc-CCeEEEEECCCCcEEEEeeCC--CCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEC-----CCCe
Q 011916 174 VDWSS-QNVLAVGL-GTCVYLWTASNSKVTRLCDLG--PGDSVCSVQWTR--EGSYISVGTNLGQVQVWDG-----TQCK 242 (475)
Q Consensus 174 l~ws~-~~~la~~~-~~~V~lw~~~~~~~~~~~~~~--~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~-----~~~~ 242 (475)
+.+++ ...++++. ...|.+||.+.++...-++.+ ....|+.+.+.. |..++++|+.||.|+||+- .+.+
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 44444 23445544 678999999999987777653 356899999876 5578999999999999973 2234
Q ss_pred eeEEecC-------CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeC
Q 011916 243 RVRTFGG-------HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGN 312 (475)
Q Consensus 243 ~~~~~~~-------h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~ 312 (475)
.+..+.+ ..+.-.-+.|. ..+|++++.-..|+|||......+.-...+....|+++.-+- .|+.++.|..
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 4443321 11222445673 345555555899999999844433333444556677776544 5789999999
Q ss_pred CCcEEEEECCCCc---eeEEEeccccc--eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--e----cCCCCe
Q 011916 313 DNQLLVWNQHSQQ---PTLRLTEHTAA--VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--V----DTGSQV 381 (475)
Q Consensus 313 Dg~I~iwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~----~~~~~v 381 (475)
||.|++||.+... .+...+.|... |..+.+.+.|-.-+++|+ .+|.|++||++....... + +.++..
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccc
Confidence 9999999998543 46677788887 999999987766566654 999999999998422221 1 235569
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++..+++...+++ |+. +.|.||++. ++.+..++. ..+.+.|++|+|-.-.||+|+.|.+|.||....+
T Consensus 1308 Tal~VH~hapiiAs--Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIAS--GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeeeccCCCeeee--cCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999999998 766 999999985 333433332 2355799999999999999999999999998765
Q ss_pred CC
Q 011916 455 LK 456 (475)
Q Consensus 455 ~~ 456 (475)
..
T Consensus 1384 ~~ 1385 (1387)
T KOG1517|consen 1384 RL 1385 (1387)
T ss_pred CC
Confidence 43
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=4.7e-17 Score=159.42 Aligned_cols=222 Identities=19% Similarity=0.346 Sum_probs=169.1
Q ss_pred EcCCeEEEEECCCC-c-----EEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeEEecCC
Q 011916 185 GLGTCVYLWTASNS-K-----VTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQC-------KRVRTFGGH 250 (475)
Q Consensus 185 ~~~~~V~lw~~~~~-~-----~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h 250 (475)
|.+|.|-||++... + +..+ -.+..|+.+.|.| |...||+++.||.|++|.+..+ .....+..|
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l---~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL---FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc---ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 44789999998753 2 2222 2467899999999 8889999999999999998653 345677899
Q ss_pred CCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-
Q 011916 251 QTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP- 326 (475)
Q Consensus 251 ~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~- 326 (475)
...|+++.|++ +.|++++.|-+|.+||++ .......+.+|.+.|.+++|||+|+.+|+.+.||+|++|+.+.++.
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehh-hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 99999999986 899999999999999999 5667778999999999999999999999999999999999987643
Q ss_pred eEEEec-cccceeEEEECCCCCcEEEEecC-CCCCeEEEEECCCC--ceeeee--cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 327 TLRLTE-HTAAVKAIAWSPHQSSLLASGGG-TADRCIRFWNTSNG--HQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 327 ~~~~~~-h~~~v~~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~--~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.-.+ -...--.|.|.-+|++++++|-. ...+.|.+||..+- ..+... +..-++.--.+.+|.+.|+.+ |-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt-GKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT-GKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe-cCC
Confidence 332221 11233568899999988888631 12467889987653 333332 333334444566777777665 888
Q ss_pred CCeEEEEECCC
Q 011916 401 QNQIMVWKYPS 411 (475)
Q Consensus 401 dg~I~iwd~~~ 411 (475)
|..|.+|.+-.
T Consensus 835 D~~v~~yEv~~ 845 (1012)
T KOG1445|consen 835 DRFVNMYEVIY 845 (1012)
T ss_pred CceEEEEEecC
Confidence 99999998743
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.6e-16 Score=161.36 Aligned_cols=231 Identities=16% Similarity=0.111 Sum_probs=164.3
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCee--eEEecCCCCceEEEEe--C
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKR--VRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~--~~~~~~h~~~v~~l~~--~ 260 (475)
..|++||........+. .+...+.+++|+|||+.|+.++.+ ..|++||+.+++. +..+.+|. ..++| +
T Consensus 184 ~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence 58999999877644333 567789999999999999987654 3699999988754 33344443 35677 5
Q ss_pred CCEEEEE-eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEEeccccce
Q 011916 261 SRILSSG-SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQ-QPTLRLTEHTAAV 337 (475)
Q Consensus 261 ~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~-~~~~~~~~h~~~v 337 (475)
++.|+.+ +.+|.+.||.+.........+..+...+....|+|||+.|+.++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 6777765 46887766654433444566777777888999999999877655 5677888876532 222222 3333
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKV 415 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~ 415 (475)
..+.|+|+|+.+++++ .+ .+.+||+.+++....... .....+.|+|+|+.|+. +..++.+.+|++ .++..+
T Consensus 336 ~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 336 YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEEEECCCCce
Confidence 4678999999877764 24 466699998876543322 23466889999999998 556777777765 457788
Q ss_pred EEecCCCcceEEEEECCC
Q 011916 416 STLTGHSLRVLYLATSPD 433 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spd 433 (475)
..+..|.+.+...+|+|-
T Consensus 409 ~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEccCCCCCCCCcccCCC
Confidence 888889988999999984
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.6e-16 Score=159.74 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=184.7
Q ss_pred CCCCceeccCCCCCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCC--
Q 011916 153 PKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGS-- 222 (475)
Q Consensus 153 ~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~-- 222 (475)
|..|+.+++.+ ..+.++.+++. +++++|. +|.|.+||+..+... ......|.++++.+.|..+..
T Consensus 232 p~~Pe~~~~~~-----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 232 PNTPELVLESP-----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCCceEEEecC-----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCC
Confidence 45677777755 34677777763 5666655 899999999877652 222237889999999987544
Q ss_pred EEEEEeCCCeEEEEECCCCee-eE-----Eec------CCCCceEEEEe---CCCEEEEEeCCCcEEEEECC---CCC--
Q 011916 223 YISVGTNLGQVQVWDGTQCKR-VR-----TFG------GHQTRAGVLAW---NSRILSSGSRDRNILQHDLR---VSS-- 282 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~-~~-----~~~------~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~---~~~-- 282 (475)
-+++++.||.|..|+++.-.. .. ... .....+++++| ++..++.|+.+|.|..-+-. ...
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 499999999999998764322 11 111 12346788888 57899999999999874332 122
Q ss_pred --ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 --DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 --~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
+....+..|.+.|.++.++|=+..++..+.|-+|+||... ...++..+..+...|.+++|||....+++++. .||
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G 464 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDG 464 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCC
Confidence 2234566788999999999955544444448999999998 77788888888888999999999999999975 899
Q ss_pred eEEEEECCCC--ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 360 CIRFWNTSNG--HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 360 ~I~iwd~~~~--~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.|.+||+... .++.+.. .....+.+.|++.|+.|++ |...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcC
Confidence 9999998653 3333332 2445677888888999999 9999999999985
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=7.1e-17 Score=158.95 Aligned_cols=247 Identities=13% Similarity=0.290 Sum_probs=184.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
..|..++|-|||..|+.+..+ .+.|||...|..+.++++|...|.+++| +|..+++|+.|+.|.+|.-...+. .
T Consensus 13 hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---L 88 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---L 88 (1081)
T ss_pred cchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---e
Confidence 478999999999988887764 7999999999999999999999999999 689999999999999998763332 2
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
-..|...|.|+.|+|-.+.|++++- +..-+|........ .. .....+.+.+|..||.+++. |-.+|+|.+-+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylal---G~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLAL---GMFNGTISIRNK- 161 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEE---eccCceEEeecC-
Confidence 3469999999999999999999886 45778876643322 11 23567889999999996665 448999999874
Q ss_pred CCceeeeec----CCCCeeEEEEcCCCC-----eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 368 NGHQLNSVD----TGSQVCNLAWSKNVN-----ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 368 ~~~~~~~~~----~~~~v~~l~~s~~~~-----~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
+|+....++ ..++|.+++|+|... .+++ ..-..++.+|.+. |+.+..-+.-.-...|+.+.++|++++
T Consensus 162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV--~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV--ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE--EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEE
Confidence 455444443 356899999999643 2333 3445566666653 444443333444567899999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcccCCcccccc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALVKDTSLWSLG 470 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~ 470 (475)
.|+.|+.+.+|--+.-..-..-..++.+|++.
T Consensus 239 iGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~ 270 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ 270 (1081)
T ss_pred EccCCCceEEEeecCeEEeeccccceeEEEEE
Confidence 99999999998755433333333566777764
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.2e-14 Score=134.83 Aligned_cols=273 Identities=16% Similarity=0.252 Sum_probs=199.9
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~~~ 247 (475)
++.+.|..+ .++++|......+++.+.-....... ..+..|..+-|+ ..++|..+.+ ..+++++.+....+..+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~-~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD-TEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHHhhccc-CCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEE
Confidence 455668887 68888988888888877654311111 223455566665 3466665554 34899998887777666
Q ss_pred cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec---CccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 011916 248 GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA---GHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQH 322 (475)
Q Consensus 248 ~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~ 322 (475)
. ....|.++..|.+.|+++-.+. |.|||++ .-+.+.++. .+...++++..+..+.+||.-+ ..|.|.+||..
T Consensus 85 ~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~-~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 85 F-FPTSILAVRMNRKRLVVCLEES-IYIYDIK-DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred e-cCCceEEEEEccceEEEEEccc-EEEEecc-cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 4 4568999999988888887766 9999998 445444433 4566788888888888998743 45899999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEe
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g 398 (475)
+-+++..+..|.+.+-+++|+++|. ++|+++ +.|+ ||++.+.+|+.+.++..+ ..|.+++|++++++|.+ .
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--s 236 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA--S 236 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE--e
Confidence 9999999999999999999999999 666654 5555 899999999999999655 56899999999999998 6
Q ss_pred cCCCeEEEEECCCCc-------------------------------------eEEEecCCCcce-EEEEEC--CCCCEEE
Q 011916 399 YSQNQIMVWKYPSMA-------------------------------------KVSTLTGHSLRV-LYLATS--PDGQTIV 438 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~-------------------------------------~~~~l~~h~~~V-~~l~~s--pdg~~l~ 438 (475)
++.++|+||++.... ...+.+...... ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 688999999875211 001111111111 222333 4678899
Q ss_pred EEeCCCCEEEEecCCC
Q 011916 439 TGAGDETLRFWNVFPS 454 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~ 454 (475)
.++.||.++.|.+...
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999999864
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.9e-16 Score=143.98 Aligned_cols=281 Identities=14% Similarity=0.227 Sum_probs=208.8
Q ss_pred CCCceeEEecCCC-CEEEE-EcCCeEEEEECCC------CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASN------SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~------~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+-..||++.|+.+ .+|+. |.|..+.||+++. .+.+.+....|...|.|++|.-..+.|++|..+|+|.+.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 3457999999976 44444 5578999999864 35555555467789999999999999999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccE--EEecCccCCEEEEEEcC-CCCEEEEEe
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYI--CKLAGHKSEVCGLKWSH-DDRELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~s~-~~~~lasg~ 311 (475)
++.+.+..+.. ..+.|..+..++ +.|++.+.+|.|.+||++.....+ ..+.........+.|+| ...+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 99988877652 345888888764 899999999999999998654322 22333455678899999 456888899
Q ss_pred CCCcEEEEECCCCc-eeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeecCCC----
Q 011916 312 NDNQLLVWNQHSQQ-PTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVDTGS---- 379 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~-~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~~~~---- 379 (475)
..+-+-+||.+... ++..... ....-.++.|+|.|..+++.- ....-.+||+....+ +...++..
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcce
Confidence 99999999998653 2222211 122346789999999888863 345566788776443 34444322
Q ss_pred ---CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceEEEecCCCcceEEEEECCC
Q 011916 380 ---QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-----------------------AKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 380 ---~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~spd 433 (475)
.+.+++|..+.. +++ |+.+-.|++|.++.. ..+..+++|..-++.+.|+|.
T Consensus 292 N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred eeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 355667766544 555 888999999998621 234567899999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCC
Q 011916 434 GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+|++.+....++||.-..
T Consensus 369 ~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cceEeccchhhheecccccc
Confidence 99999999999999997543
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.3e-16 Score=143.68 Aligned_cols=227 Identities=16% Similarity=0.288 Sum_probs=172.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCCCccE-EEecCcc-CCE
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVSSDYI-CKLAGHK-SEV 295 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~-~~V 295 (475)
..+|++..+|.|++||..+++.+..++++...+..+.| .++.+.+|+.||+|++||+|...+.. .....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57999999999999999999999999999999998888 25899999999999999999655433 3344454 467
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCce-eEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 296 CGLKWSHDDRELASGGN----DNQLLVWNQHSQQP-TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+++.+..++.+++|.. |-.|.+||++..+. +..+ ..|...|+++.|+|....++++|+ .||.|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCCC
Confidence 77887778889988863 56899999998765 4444 359999999999999999999976 9999999999754
Q ss_pred c----eeeeecCCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCC------------cceEEEEECC
Q 011916 370 H----QLNSVDTGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS------------LRVLYLATSP 432 (475)
Q Consensus 370 ~----~~~~~~~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------------~~V~~l~~sp 432 (475)
. ++..+.+++.|..+.|..++ +.|.+ -+..+...+|+++.+.....+.... ..+.......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~c--lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMC--LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEE--EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 3 45667788999999999887 33544 3457889999998877554443211 1122222223
Q ss_pred CCCEEEEEeC-CCCEEEEecC
Q 011916 433 DGQTIVTGAG-DETLRFWNVF 452 (475)
Q Consensus 433 dg~~l~s~s~-Dg~I~iW~~~ 452 (475)
++..++.++. -++..++-+.
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred CcceEEEeccccCceeEEEee
Confidence 5556666655 5666666655
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=3.4e-16 Score=146.49 Aligned_cols=240 Identities=22% Similarity=0.363 Sum_probs=174.2
Q ss_pred eeEEecCCC---CEEEEEcCCeEEEEECCCC-------cEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQ---NVLAVGLGTCVYLWTASNS-------KVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~---~~la~~~~~~V~lw~~~~~-------~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..+++.++ .+.++|.|..|+||.+..+ ++..+-.+ .|...|+++.|+|+|+.||+|+.+|.|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 444555543 4667777999999987643 22222223 688999999999999999999999999999765
Q ss_pred --------C--------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc
Q 011916 240 --------Q--------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301 (475)
Q Consensus 240 --------~--------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 301 (475)
+ ....+.+.+|...|..++| ++.++++++-|..+++||+. .+.....+..|...|..++|.
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEeeccccccccceeecc
Confidence 2 2344567789999999999 57899999999999999999 788889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEe-------------------ccc----cceeEEEECCCCCcEEEEecCC--
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLT-------------------EHT----AAVKAIAWSPHQSSLLASGGGT-- 356 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-------------------~h~----~~v~~l~~sp~~~~ll~sg~Gs-- 356 (475)
|-++++++-+.|...+++.+.....++... -|. .-...++|+|+|..|+. ..|.
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt-Pag~~~ 253 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT-PAGLFK 253 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc-ccceee
Confidence 999999998888877766654322211110 011 12345566777663332 2110
Q ss_pred -----------------------------------------------------------------CCCeEEEEECCCCce
Q 011916 357 -----------------------------------------------------------------ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 357 -----------------------------------------------------------------~d~~I~iwd~~~~~~ 371 (475)
..+.+++||.++-.+
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 234556666666555
Q ss_pred eeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011916 372 LNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414 (475)
Q Consensus 372 ~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 414 (475)
+.... |-..++.++|+++|..|++ .+.||...+.-++..+.
T Consensus 334 ~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 334 LAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcchhc
Confidence 55442 4567999999999999999 77899888777766554
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=3.4e-17 Score=164.91 Aligned_cols=283 Identities=15% Similarity=0.222 Sum_probs=218.6
Q ss_pred CCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 165 LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+....|+..++=+..++++++.|..|+||..+++.....+. +|.+.|+.++.+.+..++|+++.|..|++|.+.++.++
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 34456666666667789999999999999999999888886 99999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC-ccE-EEe-cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 245 RTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYI-CKL-AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~-~~~-~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
..+.+|++.|++++|.+.. +.+.||++++||.+... ..+ .-+ ......+.++.|...+.-+++|+.|+.-..|.+
T Consensus 268 svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 9999999999999998865 78899999999998211 100 001 112356788888888999999999999888876
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
.... .+...+.-+..+.+-..+..+.- .+-.+.+|++.+|..++.. .+...+..+.++|-...++.. ..-
T Consensus 346 ~~l~------~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms-ag~ 416 (1113)
T KOG0644|consen 346 EQLA------WRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS-AGY 416 (1113)
T ss_pred hHhh------hhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh-ccC
Confidence 5321 12222222222223333444432 6888999999999888776 466789999999988887766 447
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
||.+.|||+-.+.++.........+..-+||+||+.++....-|.++|.....+.....
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence 99999999988877665543345667779999999999888889999998876655443
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=141.52 Aligned_cols=243 Identities=14% Similarity=0.229 Sum_probs=182.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------CKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHD 277 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd 277 (475)
+|.+.|.++.|+.++++||+|+.|..+++|+++. .+++..+. .|...|.|++|+ ...+++|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 7899999999999999999999999999999753 35566555 355899999996 47999999999999999
Q ss_pred CCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-e--eEEEeccccceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-P--TLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~--~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+.+. +.+..+. ...+.|..+..+|-.+.|++.+.++.|.+||.+... + +............+.|+|....|+++
T Consensus 134 iEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9843 3333322 234589999999999999999999999999998654 2 22333455677889999999999998
Q ss_pred ecCCCCCeEEEEECCCCce-eeee----cC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecCCC-
Q 011916 353 GGGTADRCIRFWNTSNGHQ-LNSV----DT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTGHS- 422 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~-~~~~----~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~h~- 422 (475)
.. ..+-+-+||.+..+. +... .. ...-....|+|.|+.+++. -....-.+||+.+..+ +..+ .|.
T Consensus 213 ~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi--RR~~~P~~~D~~S~R~~V~k~-D~N~ 287 (609)
T KOG4227|consen 213 NS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI--RRGKCPLYFDFISQRCFVLKS-DHNP 287 (609)
T ss_pred cc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh--hccCCCEEeeeecccceeEec-cCCC
Confidence 76 788899999876532 1111 11 1234678899999999873 3344556788876443 2332 232
Q ss_pred ------cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 423 ------LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 423 ------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
..+.+++|.-|. .+++|+.+=.|++|.+.....
T Consensus 288 ~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred Ccceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 246677887665 489999999999999975443
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=151.85 Aligned_cols=205 Identities=19% Similarity=0.324 Sum_probs=160.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
+.++.++.||.+.|.+- .+++....+ .|.+.|.+-.|+|||.-|++++.||.|++|. .+|-+..++......|.|++
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 34777788999888874 455555554 7889999999999999999999999999998 55555555666778999999
Q ss_pred eCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccc
Q 011916 259 WNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 259 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~ 335 (475)
|.+ +.+++.+ +.+.|=.+. ....+...++|.+-|.++.|++..+++++||+|-..+|||.. |..++.-..|..
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc
Confidence 953 4555444 566666666 455667789999999999999999999999999999999965 566777788999
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
+|++++|.|+ + +++.++ -+++++= -...+.|.+++|++||..+++ |+..|.+.+-
T Consensus 229 ~ITSva~npd-~-~~~v~S---~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~--gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE-K-DYLLWS---YNTARFS----------SPRVGSIFNLSWSADGTQATC--GTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc-c-ceeeee---eeeeeec----------CCCccceEEEEEcCCCceeec--cccCceEEEe
Confidence 9999999999 3 555543 4444421 123467999999999999998 7788877653
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.8e-14 Score=124.58 Aligned_cols=262 Identities=13% Similarity=0.177 Sum_probs=183.9
Q ss_pred EecCCC--CEEEEEcCCeEEEEECCC---------CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 174 VDWSSQ--NVLAVGLGTCVYLWTASN---------SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~~~~V~lw~~~~---------~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
-+|+|. .++++...|.|.+..+.+ ++........|+++|..++|. ..+|++|+. |.|+-|......
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 456764 455666689999998753 233333334789999999998 446666665 999999754322
Q ss_pred e------eEEe--cCCC-----CceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 243 R------VRTF--GGHQ-----TRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 243 ~------~~~~--~~h~-----~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
. +..+ ..|. ..|.++..+ .+-++.++.|+.++.||++ .+.....+++|+..|.++.--.....+
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEEcCCcceeeeeeecccCcce
Confidence 1 1111 1222 356666665 3555566689999999999 788899999999999999985556689
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec---------c-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE---------H-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~---------h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
++|++||+++|||+++++.+..+.. | ...|.+++-+.+ .+++|+ ...+.+|+++..++...+..
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEec
Confidence 9999999999999999998877643 1 234566666544 556664 67899999999999999999
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE-EeCCCCEEEEe
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT-GAGDETLRFWN 450 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-~s~Dg~I~iW~ 450 (475)
...+..+.|..+ .+++ +...+.|.-|.+. +.............+...|+..--.+++ ++....+.|+.
T Consensus 246 pa~v~~v~F~~d--~vl~--~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 246 PARVHLVDFVDD--CVLI--GGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccceeEeeeecc--eEEE--eccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 999999988754 4555 5567788888874 4444555554445666666655444444 45555666654
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.5e-15 Score=139.97 Aligned_cols=195 Identities=21% Similarity=0.224 Sum_probs=153.6
Q ss_pred EEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 255 GVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 255 ~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
.++++ +|..|++|+.||++++|+.. ....+.....|..+|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 35555 57899999999999999976 455566677899999999999999999999999 999999999977766542
Q ss_pred --cccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCce------eeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 333 --HTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQ------LNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 333 --h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
-......+.|+.++ ..++++. -..-+.|+.|++....- .+.+.....|.+++.+++|++++. |+.+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al--GT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL--GTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE--eccC
Confidence 23445667777665 3233322 12456677777654322 112233457999999999999999 9999
Q ss_pred CeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 402 NQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|.|.|++..+.+.+...+ .|...|+.+.|+||.+++++.+.|.+..+..+.-.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999999999998887765 59999999999999999999999999999988763
No 194
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.4e-14 Score=144.16 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=162.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|++||........+. .+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ......+..+.| +|+.
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 7999999877665554 35678999999999999987643 35799999988754332 222233445677 5666
Q ss_pred EEEE-eCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeccccce
Q 011916 264 LSSG-SRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~sg-s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+.. +.+| .|.+||+.. +. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..+....
T Consensus 257 La~~~~~~g~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 6654 4455 488889873 33 34455555678889999999998877754 3 466667776654 3444444556
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 416 (475)
....|+|+|+.+++++.......|.+||+.+++... +..........|+|||+.|+.++... ...+.++++ ++....
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeE
Confidence 778999999988877642223568999998886543 33333345788999999999853211 124777787 455667
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+.+|.+.+...+|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 7778888899999987
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=7.7e-14 Score=137.12 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=156.0
Q ss_pred EEecCCC-CEE-EEE-cCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC----ee
Q 011916 173 LVDWSSQ-NVL-AVG-LGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQC----KR 243 (475)
Q Consensus 173 ~l~ws~~-~~l-a~~-~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~----~~ 243 (475)
.+.++++ +.| +++ .++.|.+|++. ++++...-.....+....++|+|+|++|++++. ++.|.+|++++. +.
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4677776 444 433 36889999987 444433322233446778999999999888775 789999998642 22
Q ss_pred eEEecCCCCceEEEEeC--CCEEE-EEeCCCcEEEEECCCCCccE------EEecCccCCEEEEEEcCCCCEEEEEeC-C
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILS-SGSRDRNILQHDLRVSSDYI------CKLAGHKSEVCGLKWSHDDRELASGGN-D 313 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~s~~~~~lasg~~-D 313 (475)
+..+.+ .....+++++ +++++ +...++.|.+||+...+... .... .......+.|+|+|++++++.. +
T Consensus 119 ~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCC
Confidence 232322 2334556664 56665 55567999999997533221 1111 2234678999999999988876 8
Q ss_pred CcEEEEECCC--Cc--eeEEEecc------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----eeeeecCCC
Q 011916 314 NQLLVWNQHS--QQ--PTLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----QLNSVDTGS 379 (475)
Q Consensus 314 g~I~iwd~~~--~~--~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~~~~~ 379 (475)
+.|.+||+.. ++ .+..+..+ ......+.++|++++++++.. .++.|.+|++.... .+..+..+.
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~~~~~ 274 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQPTET 274 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEEeccc
Confidence 9999999973 22 23333221 112346889999998888754 68999999986432 233344455
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
....+.|+|+|++|+++ ...++.|.+|++.
T Consensus 275 ~p~~~~~~~dg~~l~va-~~~~~~v~v~~~~ 304 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAA-GQKSHHISVYEID 304 (330)
T ss_pred cCCceEECCCCCEEEEE-EccCCcEEEEEEc
Confidence 66789999999999996 3458899999874
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=149.49 Aligned_cols=207 Identities=19% Similarity=0.349 Sum_probs=163.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.| +..++++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999999999999999999999999888888775 89999999999 5689999999999999999741
Q ss_pred ---------CccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----------EEEeccccceeEEE
Q 011916 282 ---------SDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPT----------LRLTEHTAAVKAIA 341 (475)
Q Consensus 282 ---------~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~----------~~~~~h~~~v~~l~ 341 (475)
.........|...|..|+-.|++ +.+.++++||+|+-+|++....- ..+...--..+++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 12344456788899999999988 79999999999999999863210 01111223568999
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCC--------Cc----------eeeeecCC-------------CCeeEEEEcCCC
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSN--------GH----------QLNSVDTG-------------SQVCNLAWSKNV 390 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~--------~~----------~~~~~~~~-------------~~v~~l~~s~~~ 390 (475)
.+|...+++++|+ .|-..++||.+. +. ++..+..+ ..++-+.|+|+|
T Consensus 208 isp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 208 ISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred ecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 9999999999987 899999999431 11 22222110 114567899999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
.+|++ ......|+++|+...+....
T Consensus 286 tElLv--s~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 286 TELLV--SWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cEEEE--eeCCeEEEEEeecCCCCcee
Confidence 99999 66677899999987765443
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=8.8e-14 Score=126.85 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=170.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEEEEeCCCEEEE-EeCC------CcEEEEECCCC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVLAWNSRILSS-GSRD------RNILQHDLRVS 281 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s-gs~d------g~I~iwd~~~~ 281 (475)
...+++|+.|...+++|..+| .+||+.+--+.......+. -.+..+-|..++|+. |+.+ ..+.|||-. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 455699999999999999987 8999987644432222222 334444454555544 3333 479999943 4
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCC-cEEEEecCCCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADR 359 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~ 359 (475)
..++..+. ...+|.++.+.++ .|++.- .+.|+||... +.+.++.+.....+---.+.+|... .+++.- |..-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP-g~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP-GFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC-CCccc
Confidence 45555444 6788999999765 555554 4799999988 5566666654332222334444333 244433 56889
Q ss_pred eEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEecC--CCcceEEEEECCC
Q 011916 360 CIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPSMAKVSTLTG--HSLRVLYLATSPD 433 (475)
Q Consensus 360 ~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~~~~~~~l~~--h~~~V~~l~~spd 433 (475)
.|+|-|+...+. .....|.+.|.+++++.+|..+++ ++..|+ |+|||..+++++.++.. ....|.+|+||||
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT--aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT--ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE--eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 999999876655 445578999999999999999999 666775 89999999999999975 3456999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
..+|+++|.-|+|.|+.+.....
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCCC
Confidence 99999999999999999987553
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=145.28 Aligned_cols=275 Identities=13% Similarity=0.197 Sum_probs=191.0
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEe----eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----Cee
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLC----DLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ----CKR 243 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~----~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~----~~~ 243 (475)
++..++. .+.....+..+++|+...+. .... ...|...+++++++|+++++|+|..||.|.+|.--. ...
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 3455554 67777888899999998865 2221 225666789999999999999999999999997322 233
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
...+.-|...|.+++| +|.+|++|+..|.+.+|.+.+.. .+-+..-.+.|..+.++||+.+.+....|+.|.+...
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 4556679999999999 68999999999999999998544 4556667789999999999999999999999999987
Q ss_pred CCCceeEEEec-----------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------
Q 011916 322 HSQQPTLRLTE-----------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------------- 376 (475)
Q Consensus 322 ~~~~~~~~~~~-----------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------------- 376 (475)
.+......+.+ ..+-.+.++++|--..++..| ..+.|.+||+.+.+.+..+.
T Consensus 322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 65443333222 234467788888444344433 68888888876543332221
Q ss_pred -------------------------------------------------------CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 377 -------------------------------------------------------TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 377 -------------------------------------------------------~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
|+..+...++.+..+..-+++.+.|
T Consensus 399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 1111111122221111011225688
Q ss_pred CeEEEEECCCC----------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 402 NQIMVWKYPSM----------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 402 g~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|.++||-+... .+...-.-|..+++.++|+.||..| +.+.|++|.+||..+.
T Consensus 479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred CeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 99999987322 2222222378889999999999655 5667889999999883
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=145.21 Aligned_cols=280 Identities=18% Similarity=0.261 Sum_probs=207.7
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG---SYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg---~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
-.+|++ ..+.+..+..|.||...++..+..+. +|..+++.+.+.|.. .++++++.+|.|++||...+.+++++..
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 456666 67888889999999999999888765 889999999998854 4788999999999999999888877653
Q ss_pred CCCc-------------eEEEEeCC----------------------------------------------CEEEEEeCC
Q 011916 250 HQTR-------------AGVLAWNS----------------------------------------------RILSSGSRD 270 (475)
Q Consensus 250 h~~~-------------v~~l~~~~----------------------------------------------~~l~sgs~d 270 (475)
+... +....+.+ ..+.....+
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 2110 00000000 011111223
Q ss_pred CcEEEEECCCCCccEE---EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--ceeEEEeccccceeEEEEC
Q 011916 271 RNILQHDLRVSSDYIC---KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS--Q--QPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~--~--~~~~~~~~h~~~v~~l~~s 343 (475)
..+.+|+.....+... .-..|.-.+++.++||+++++|+|..||.|.+|.--. . .....+.-|...|.+++|+
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 3455565553221110 1123556689999999999999999999999997443 1 2245667799999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC--
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-- 421 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-- 421 (475)
++|.+|+. || ..+.+.+|.+.+++....-..++.|..+.++||+....+ ...|++|.+....+++...++.+-
T Consensus 261 ~~G~~LlS-GG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl--~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 261 SDGAYLLS-GG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL--VLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred cCCceEee-cc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE--EecCceEEEEeccchhhhhhccCccC
Confidence 99997666 44 899999999999995555578899999999999999888 457999999999887766655542
Q ss_pred ---------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 422 ---------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 422 ---------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.+-.+.++++|.-+.++-.+..|.|.+||+.+......
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 23367889999777888889999999999987765543
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.5e-14 Score=130.07 Aligned_cols=278 Identities=18% Similarity=0.288 Sum_probs=183.3
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ--- 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~--- 240 (475)
....+..++|++. .++.++.|..|++|+........+.. .....|+|++|-| .+..|++|+.. -|.||....
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 3456778999986 35556679999999988844444332 4467899999999 45788888885 599998643
Q ss_pred -CeeeE----------EecCCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 241 -CKRVR----------TFGGHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 241 -~~~~~----------~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
+..++ ...+| ..|+++.|+ |..+++++ .|..|.|||...... +.......+.+.-+.||||+.+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCCE
Confidence 12111 22244 689999995 67777776 567899999985433 3223344567889999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----C--------ce---
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN----G--------HQ--- 371 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~----~--------~~--- 371 (475)
|+.+.-|+..++|......-........+.|....|+|+|+.|+.+.+ +.-++|.+.- + +.
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccceeeee
Confidence 999999999999965433222222234568999999999999998875 3333333221 0 00
Q ss_pred eeee----------cCCCCeeEEEEcCCCCeEEEEEecCC------CeEEEEECCCCceEEEec-C--CCcceEEEEECC
Q 011916 372 LNSV----------DTGSQVCNLAWSKNVNELVSTHGYSQ------NQIMVWKYPSMAKVSTLT-G--HSLRVLYLATSP 432 (475)
Q Consensus 372 ~~~~----------~~~~~v~~l~~s~~~~~l~~~~g~~d------g~I~iwd~~~~~~~~~l~-~--h~~~V~~l~~sp 432 (475)
+..+ ...+.+.+++|.|.|.+|+++--..+ ..|.+||.+..-.+.-.. + .......+.|+|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 1111 02467889999999999999532221 246677765443332221 1 111245566665
Q ss_pred ---CCCEEEEEeCCCCEEEEecC
Q 011916 433 ---DGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 433 ---dg~~l~s~s~Dg~I~iW~~~ 452 (475)
+|.+|..+=..|.+.-|.+.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 56677777677888777764
No 201
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.6e-13 Score=135.58 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=183.8
Q ss_pred CCEEEEE--cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 179 QNVLAVG--LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 179 ~~~la~~--~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
.+++.+. .++.|.+.|..+.+.+..+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+.+.++..... ...
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cce
Confidence 3555443 4799999999999999988643 23345578999999999999999999999999999998874333 344
Q ss_pred EEe--CCCEEEEEe-CCCcEEEEECCCCCccEEEecC-------ccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCc
Q 011916 257 LAW--NSRILSSGS-RDRNILQHDLRVSSDYICKLAG-------HKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQ 325 (475)
Q Consensus 257 l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~ 325 (475)
+++ +|++++++. .++.+.++|.+ ..+.++.+.. ....+.+|..++....++..-. .+.|.+.|....+
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 555 788887665 68999999998 4555555443 2346888888998886665544 4888888987765
Q ss_pred eeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----------------------------
Q 011916 326 PTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------------------------- 376 (475)
Q Consensus 326 ~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------------------------- 376 (475)
.+. .............|+|++++++++.. .++.|.++|..+++.+..++
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 443 23334456778999999998888654 57788888887765443221
Q ss_pred ---------------------------CCCCeeEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCceEEEecCCC-cceE
Q 011916 377 ---------------------------TGSQVCNLAWSKNVNELVSTH--GYSQNQIMVWKYPSMAKVSTLTGHS-LRVL 426 (475)
Q Consensus 377 ---------------------------~~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~ 426 (475)
..+.-.-+..+|+++++.+.. +...+.|.++|..+.+.+.++.... .++.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 111223445688999988830 1346799999999998888775322 3599
Q ss_pred EEEECCCCCEEEEEeCC--CCEEEEecCCCCCCCCcc
Q 011916 427 YLATSPDGQTIVTGAGD--ETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 427 ~l~~spdg~~l~s~s~D--g~I~iW~~~~~~~~~~~~ 461 (475)
++.|++||+.+..+..+ +.|.+||..+.+....+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999999977665544 369999999887766543
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=9.2e-14 Score=141.62 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=164.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|++||..+.....+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+| +|+
T Consensus 182 ~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 37999999777665554 56778999999999999988764 468999999887653 34455666777788 466
Q ss_pred EE-EEEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeccccc
Q 011916 263 IL-SSGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND---NQLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 263 ~l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---g~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
.| ++.+.++. |.+||+. ......+..+........|+|||+.|+..+.. ..|++||+..++. ..+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~--~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLR--SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEEecCCCceEEEEECC--CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 55 46666665 6666776 33345566666667789999999998887642 3688889876654 344444556
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC----CeEEEEECCCC
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ----NQIMVWKYPSM 412 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~ 412 (475)
+....|+|+|+.++.+.....+..|.+||+.++.. ..+.....+....|+|+|+.|+.+..... ..|+++|+..+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77789999999888875322235789999865543 34444445778999999999887543222 36888888665
Q ss_pred ceEEEecCCCcceEEEEECC
Q 011916 413 AKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~sp 432 (475)
.. ..+. ..+.+...+|+|
T Consensus 415 ~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 415 NE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ce-EEcc-CCCCccCcccCC
Confidence 44 3443 244466677776
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=8.5e-15 Score=133.42 Aligned_cols=229 Identities=17% Similarity=0.268 Sum_probs=177.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC-
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS- 282 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~- 282 (475)
.++|+|.+|++|+..+|++..+..|.||..... +..+++..|...|+.+.|+ .+.|++|+.|..-++|.....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 478999999999999999999999999997654 5778899999999999996 4789999999999999985344
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT----LRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
+....+..++..++++.|+|.++.+|+|+.-..|.||-++....= +.-+.+...|.++.|+|++- |+++|+ .
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs--~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS--T 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc--c
Confidence 344556678999999999999999999999999999988754321 12234678899999999987 566644 9
Q ss_pred CCeEEEEECC-----C-------------Cceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEE
Q 011916 358 DRCIRFWNTS-----N-------------GHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVST 417 (475)
Q Consensus 358 d~~I~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~ 417 (475)
|+++++|..- . |+.+.+. ..++.+..+.|+|+|..|+- -..|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCchhccc
Confidence 9999999742 1 1223333 35678999999999999998 5578999999986654 3444
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+....-+.+++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444446677777765543 3333344
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.5e-16 Score=160.39 Aligned_cols=238 Identities=19% Similarity=0.334 Sum_probs=184.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|...|.|+.|...|.++++|+.|..|+||..+++.++....||.+.|+.++.+ ..++++++.|..|++|.+. .+..
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~p 266 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAP 266 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC-CCch
Confidence 788999999999999999999999999999999999999999999999999984 5788999999999999998 7888
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-----RLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+. ....+..+.|...+..+++ |+.|+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~T---gs~d~ 338 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLT---GSRDG 338 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccccccccc---ccCCc
Confidence 89999999999999999954 77889999999998211111 111 2355667777777764444 45888
Q ss_pred eEEEEECCCCceeeeecCCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEE
Q 011916 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTI 437 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l 437 (475)
.-..|.+...... ...+.-+.++.+. .+.++ .-.+-.+++|++.++..+..+.+|...+..|.++|-+ ...
T Consensus 339 ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~--ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 339 EARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVT--ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccchhhHhhhh-----ccceEEEecccccccccee--eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 8777765421110 0011111111122 23333 4567789999999999999999999999999999954 556
Q ss_pred EEEeCCCCEEEEecCCCCCCCCc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.+++.||...|||+-.+.+.+..
T Consensus 412 msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhccCCCceEeeecccCCcceee
Confidence 68899999999999988776653
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.3e-14 Score=143.45 Aligned_cols=239 Identities=13% Similarity=0.063 Sum_probs=161.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|+++|........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+.+.+| +++
T Consensus 176 ~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 46888888655544443 456789999999999999887753 3599999998865433 333345567788 456
Q ss_pred EEE-EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEE--CCCCceeEEEecccccee
Q 011916 263 ILS-SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWN--QHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 263 ~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd--~~~~~~~~~~~~h~~~v~ 338 (475)
.|+ +.+.+|...||.+.........+..+...+....|+|||+.|+..+. ++...||. +.++.. ..+..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 665 56788887777665444445566666666677899999998887654 45555554 444443 22222333345
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVS 416 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~ 416 (475)
..+|+|+|++++.+.....+..|.+||+.+++..... .........|+|+|+.|+.+.. ..| .+++.+. ++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~-~~g~~~l~~~~~-~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQ-QGGRSVLAAVSS-DGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEe-cCCCEEEEEEEC-CCCceE
Confidence 6899999998887653111237999999888755433 3334567899999999988632 333 4666666 455566
Q ss_pred EecCCCcceEEEEECCC
Q 011916 417 TLTGHSLRVLYLATSPD 433 (475)
Q Consensus 417 ~l~~h~~~V~~l~~spd 433 (475)
.+..+.+.+...+|+|-
T Consensus 409 ~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 409 RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EeecCCCCCCCCccCCC
Confidence 66667777888888873
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.6e-15 Score=146.04 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=175.9
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCC------CcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASN------SKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~------~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~ 240 (475)
.+..+.+.+- .+++++.++.+.+|++.. ..+..++.+ +|.++|.|++..+++.++++|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 3555666553 688888899999999932 234444444 8999999999999999999999999999996532
Q ss_pred ----------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEE
Q 011916 241 ----------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-REL 307 (475)
Q Consensus 241 ----------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l 307 (475)
......+.||...|+.++++ ...|++++.||++++|+......+........+.-.++.+-... ...
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 12345678999999999996 47899999999999999873333111111112223444443222 122
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGS 379 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~ 379 (475)
++...-+.-.++++.....+..+.. ....+..+.++|.+. +..++. .|+.|+++|..++..+... .+..
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAH--EDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecc--cCCceecccccccccchheeeccc
Confidence 2222223333444444443333321 124577889999997 555544 8999999999999988776 5778
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
.++++++.|+|.+|++ |..|+.+++|.+....++.....|.
T Consensus 533 svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence 8999999999999999 9999999999998877777666664
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.8e-14 Score=146.45 Aligned_cols=209 Identities=18% Similarity=0.177 Sum_probs=146.2
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCc-cEEEecCccCCEEEEEEcCC
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~ 303 (475)
+..|.+||..... .+.+..|...+...+|+ ++.|+.++.+ ..|.+||+..... .+..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986554 45677788889999994 6778777643 4699999974322 22223333 446899999
Q ss_pred CCEEEEEe-CCCcEE--EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCC
Q 011916 304 DRELASGG-NDNQLL--VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGS 379 (475)
Q Consensus 304 ~~~lasg~-~Dg~I~--iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~ 379 (475)
|+.|+.+. .+|.+. +||+.++. ...+..+...+....|+|||+.+++++. .++...||++.. +.....+.+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEecCCC
Confidence 99888765 577655 45666655 4556667777889999999998887754 567777776543 22223333322
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
....|+|+|+.|+++ .. ..+.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|.+.
T Consensus 336 --~~~~~SpDG~~ia~~--~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 --YSAQISADGKTLVMI--NG-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred --CCccCCCCCCEEEEE--cC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 467899999999884 23 45777999888654322222 23567899999999999999999888864
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.4e-14 Score=141.76 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=162.4
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|++||........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...++.| +++.
T Consensus 185 ~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 6999998766655554 456789999999999999988743 469999998876543 3333444556777 4665
Q ss_pred E-EEEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeccccce
Q 011916 264 L-SSGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DN--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
| ++.+.+| .|.+||+.. + ....+..+.......+|+|||++|+.++. +| .|+++|+.+++.. .+..+....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGS-R-QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 5 4556666 588889873 3 34455556656678899999998887764 34 4777787776543 333333445
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 416 (475)
..++|+|+|+.++.+........|.+||+.+++.. .+..+.......|+|+|+.++.+... ..+.|++++.. +....
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 57899999998887653112347999999888765 34344345678999999998875332 23468888884 44556
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+..+.+.+...+|+|
T Consensus 417 ~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVSADGEVREPAWSP 432 (433)
T ss_pred EcccCCCCCCCCccCC
Confidence 6666667777888876
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=6.6e-14 Score=146.88 Aligned_cols=293 Identities=18% Similarity=0.215 Sum_probs=197.6
Q ss_pred CceeccCCCCCCCCceeEEecCCC---CEEEEEcCCeEEEEECCCC-----cEEEEeeCC-CCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQ---NVLAVGLGTCVYLWTASNS-----KVTRLCDLG-PGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~---~~la~~~~~~V~lw~~~~~-----~~~~~~~~~-~~~~V~~v~~spdg~~la~ 226 (475)
|..++-|.-+.+.--++.++-+++ -+++++.||+|++|+...- .....+... .+..+.++...+.++.+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 555666655555555666666654 3677777999999998642 111222222 5678999999999999999
Q ss_pred EeCCCeEEEEECCCC-------eeeEEecCC-CCce-EEEEeC---C-CEEEEEeCCCcEEEEECCCCCc-cEEEecCcc
Q 011916 227 GTNLGQVQVWDGTQC-------KRVRTFGGH-QTRA-GVLAWN---S-RILSSGSRDRNILQHDLRVSSD-YICKLAGHK 292 (475)
Q Consensus 227 g~~dg~v~iwd~~~~-------~~~~~~~~h-~~~v-~~l~~~---~-~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~ 292 (475)
|+.||.|++.+++.. .+.+....+ .+.+ ...++. . ..|+.+...+.|..||++.... ...+.....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 122222222 2233 333442 3 4888899999999999984322 122233345
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECCCCC--cEEEEecCCCCCeEEEEECCCC
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+.|++++.+|.++++++|+..|.+.+||++-+.++.... .+..++..+..+|--. ...++++-+..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 779999999999999999999999999999888876654 2557888888877544 4444443236889999999999
Q ss_pred ceeeeecCCCC--------------------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--------------
Q 011916 370 HQLNSVDTGSQ--------------------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV-------------- 415 (475)
Q Consensus 370 ~~~~~~~~~~~--------------------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~-------------- 415 (475)
.+...+-.... .....+...+..+++ |++|..|+.||....+..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCcccccccc
Confidence 77665532211 112223333444555 889999999997421110
Q ss_pred ----------------------------------EEe--------cCCCcceEEEEECCCC-CEEEEEeCCCCEEEEe
Q 011916 416 ----------------------------------STL--------TGHSLRVLYLATSPDG-QTIVTGAGDETLRFWN 450 (475)
Q Consensus 416 ----------------------------------~~l--------~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~ 450 (475)
..+ ..|...|++|++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1367788888876543 5888999999999995
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.6e-12 Score=118.80 Aligned_cols=273 Identities=14% Similarity=0.228 Sum_probs=189.2
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCC------CeEEEEECCCCeeeE
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNL------GQVQVWDGTQCKRVR 245 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~d------g~v~iwd~~~~~~~~ 245 (475)
++|..| ..++++.+...+||+.+--+....-+.. .+.+.-+..--..++||. |+.+ ..|.|||-...+++.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 899987 7999999999999998763322111111 111222222223445554 4333 469999976677777
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~~~~~las-g~~Dg~I~iwd~~ 322 (475)
++. ....|.++....+.|++.- .+.|.||.....-+.+..+.. ....+++++-..+..+||. |-.-|.|.|-|+.
T Consensus 90 el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 90 ELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred EEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 765 5678999999888877775 468999988754444444332 2234666654445556665 3456899999998
Q ss_pred CCce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEE
Q 011916 323 SQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 323 ~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~ 396 (475)
..+. ...+..|...|.+++.+-+|. ++|+++ ..|+ |+|||..+|..+.++..+ ..|++++|+|++.+|++
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav- 243 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV- 243 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence 6655 467789999999999999998 666664 5555 899999999999999644 57999999999999999
Q ss_pred EecCCCeEEEEECCCCc---e---------------------EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMA---K---------------------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~---~---------------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.++.|+|+||.++... . +..++-..+...-++|..+.+.++..+.||+.+-+.+.
T Consensus 244 -sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 244 -SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred -EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 7789999999875421 1 11122223445567787776677777788987766665
Q ss_pred CC
Q 011916 453 PS 454 (475)
Q Consensus 453 ~~ 454 (475)
+.
T Consensus 323 ~~ 324 (346)
T KOG2111|consen 323 PK 324 (346)
T ss_pred cc
Confidence 44
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4e-15 Score=144.00 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=161.3
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH--DDRELASGGNDNQLLV 318 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~i 318 (475)
+...+.||++.|.|+.| +|.+|++|+.|-.+.|||.-..+.....-.+|.+.|.+++|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44568899999999999 5899999999999999999844444455678999999999999 5679999999999999
Q ss_pred EECCC----------CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-e----------cC
Q 011916 319 WNQHS----------QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS-V----------DT 377 (475)
Q Consensus 319 wd~~~----------~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~-~----------~~ 377 (475)
+|+.. ......+..|...|+.|+-.|++...+-+++ +||+|+-+|++....-.. . ..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas--EDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS--EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec--CCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99984 2344556679999999999999988888876 999999999986321111 0 01
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--------Cc----------eEEEe-cCCC-----------cceEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--------MA----------KVSTL-TGHS-----------LRVLY 427 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--------~~----------~~~~l-~~h~-----------~~V~~ 427 (475)
--...++.++|...+++++ |.++-..++||.+. +. ++..+ .+|- ..++.
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1346788999988776665 88899999999421 11 12222 1222 12577
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+.|+|+|.-|+..-....|+++|+...+..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 899999987776666678999999876654
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.4e-14 Score=130.69 Aligned_cols=239 Identities=18% Similarity=0.296 Sum_probs=168.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+-.+..++|++.-..+|++..|-.|++||-.. +....++ ..+..|+|++|. ...|+.|++. -|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34677899999777889999999999999766 4444444 345689999994 4778888775 4889977533221
Q ss_pred -------------EEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEE
Q 011916 285 -------------ICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 285 -------------~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
+....+| ..|+++.|++||..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223344 57999999999999999875 56899999998876654445567889999999999988
Q ss_pred EEecCCCCCeEEEEE-CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------------ceEE
Q 011916 351 ASGGGTADRCIRFWN-TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-------------AKVS 416 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd-~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-------------~~~~ 416 (475)
++. -|+..++|+ .++.....-.-..+.|...+|+|+|+.|+.++ +..-.|+-..+... ..+.
T Consensus 255 aAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 255 AAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred Eec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeeeec
Confidence 864 699999995 44555555555667999999999999988753 22222322222110 0111
Q ss_pred Eec------C---CCcceEEEEECCCCCEEEEEeCCC--------CEEEEecCCC
Q 011916 417 TLT------G---HSLRVLYLATSPDGQTIVTGAGDE--------TLRFWNVFPS 454 (475)
Q Consensus 417 ~l~------~---h~~~V~~l~~spdg~~l~s~s~Dg--------~I~iW~~~~~ 454 (475)
.+. + -.+.+.+|+|.|.|.+||+.-..+ .|.+||....
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 111 1 146688999999999999874433 3556665543
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=4.9e-14 Score=126.75 Aligned_cols=156 Identities=19% Similarity=0.365 Sum_probs=115.7
Q ss_pred EEEEEEcCCCCEEEEEeC----------CCcEEEEECCC-CceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 295 VCGLKWSHDDRELASGGN----------DNQLLVWNQHS-QQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~----------Dg~I~iwd~~~-~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
-..+.|+++|++|+.-.. -+...+|.++. ..++..+.- ..+.|.+++|+|+|..++++. |..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 457889999987776433 12344555432 223333332 345799999999999887665 35778999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+||++ ++.+..+. ...+..+.|+|+|++|+++. +...|.|.+||..+.+.+.+.. |. .++.++|+|||++|++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 99996 67777765 45678899999999999852 2345789999999988887765 33 478999999999999986
Q ss_pred C------CCCEEEEecCCCC
Q 011916 442 G------DETLRFWNVFPSL 455 (475)
Q Consensus 442 ~------Dg~I~iW~~~~~~ 455 (475)
. |..++||++....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999987554
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.9e-15 Score=141.67 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=197.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|..|.|+..|..|++|+.|..|.+||...++....+. +|...|..-.| +...+++++.||.+++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 789999999999999999999999999999999888777765 79888887777 2478999999999999887655
Q ss_pred Ccc--EEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec---ccc---ceeEEEECCCCCcEEEE
Q 011916 282 SDY--ICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE---HTA---AVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 282 ~~~--~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~---~v~~l~~sp~~~~ll~s 352 (475)
+.+ ...+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++...+...+.. +.. ...+|+..|-..+.+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 443 35577899999999999854 5789999999999999998765443322 233 56889999999999999
Q ss_pred ecCCCCCeEEEEECCCCce------eeee-------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--C-----
Q 011916 353 GGGTADRCIRFWNTSNGHQ------LNSV-------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--M----- 412 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~------~~~~-------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~----- 412 (475)
|+ .|..+++||.+.-.. +..+ +..-.|++++|+.++..|++ .+.|-.|++|.-.- +
T Consensus 300 gG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 300 GG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred CC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccccCCCCCC
Confidence 87 999999999875322 1222 23356999999999999998 78899999995321 2
Q ss_pred -----ceEE-EecCCCcc--eEEEE-ECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 413 -----AKVS-TLTGHSLR--VLYLA-TSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 413 -----~~~~-~l~~h~~~--V~~l~-~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..+. .++||... |.++- |-|..+|+++|+.-|.|.||+-.+++....+.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 1222 26788644 66665 57888999999999999999988877654433
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.6e-15 Score=141.30 Aligned_cols=284 Identities=17% Similarity=0.229 Sum_probs=214.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT-QC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~-~~ 241 (475)
+...++.|.|... .+++++.|..|.+||...++....+.-+|...|..-.|-| +...+++++.||.|++=.+. ++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 3456788888864 4555566889999999999988888778999999889988 45789999999999987754 33
Q ss_pred ee--eEEecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccC---CEEEEEEcCC-CCEEEEE
Q 011916 242 KR--VRTFGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKS---EVCGLKWSHD-DRELASG 310 (475)
Q Consensus 242 ~~--~~~~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~---~V~~l~~s~~-~~~lasg 310 (475)
.+ ...+..|.+.|..++. ++..|.+++.|+.+...|++.... .......+.. ....|+..|. ..++|+|
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 33 3445679999998887 468999999999999999985432 2222333333 5678888884 4599999
Q ss_pred eCCCcEEEEECCCCce------eEEEe------ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--------
Q 011916 311 GNDNQLLVWNQHSQQP------TLRLT------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------- 370 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~------~~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------- 370 (475)
+.|-.+++||.+.-.. +.++. .....|++++|+.++.-|+++- .|-.|++++-..+.
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCCc
Confidence 9999999999874321 22222 2345689999998888888876 69999999543221
Q ss_pred ----eeee-ec-C--CCCeeEEEE-cCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 371 ----QLNS-VD-T--GSQVCNLAW-SKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 371 ----~~~~-~~-~--~~~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.+.. ++ | ...|..+-| -|...++++ |+.=|.|.||+-.+++.+..+++....|+||.=+|--..||+++
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 1122 11 1 123555554 567778877 98899999999999999999988777999999999999999999
Q ss_pred CCCCEEEEecCCCC
Q 011916 442 GDETLRFWNVFPSL 455 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~ 455 (475)
-|..|+||--...+
T Consensus 456 id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 456 IDHDVKIWTPLTAE 469 (559)
T ss_pred CccceeeecCCccc
Confidence 99999999874433
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.1e-14 Score=146.30 Aligned_cols=236 Identities=20% Similarity=0.364 Sum_probs=172.5
Q ss_pred ceeEEecCCC----CEEEEEcCCeEEEEECCCC--cEEEEee----C-----CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 170 YLNLVDWSSQ----NVLAVGLGTCVYLWTASNS--KVTRLCD----L-----GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 170 ~v~~l~ws~~----~~la~~~~~~V~lw~~~~~--~~~~~~~----~-----~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
+|..+..-.+ -+++++.||.|+||+-.-. +..++.. + +..+.=.-+.|.....+|++++.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 4555555432 4788888999999975322 2222221 0 1112224567888666666666678999
Q ss_pred EEECCCCeeeEEec-CCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCC--EEEEEEcCCCC-
Q 011916 235 VWDGTQCKRVRTFG-GHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSE--VCGLKWSHDDR- 305 (475)
Q Consensus 235 iwd~~~~~~~~~~~-~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~--V~~l~~s~~~~- 305 (475)
|||....+++..+. +....|++++- +|+++++|..||.|++||.+.... .+...+.|+.. |..+.+.+.|-
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 99999888887776 45557888876 479999999999999999986543 67778889887 99999988665
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEEeccc--c-ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----
Q 011916 306 ELASGGNDNQLLVWNQHSQQPT--LRLTEHT--A-AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---- 376 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~--~~~~~h~--~-~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---- 376 (475)
.|++|+.||.|++||++..... ..+..|. + ..+++..+++.. ++++|+ . +.|+||++. |+.+..+.
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPG 1345 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcc
Confidence 5999999999999999974221 1222232 3 589999999988 888875 4 999999985 44444332
Q ss_pred ----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 377 ----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 377 ----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
..+.+.+++|+|..-.+++ |+.|..|.||.....
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhh--ccCCceEEEeecCCc
Confidence 2346799999999888888 999999999987654
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=4.6e-14 Score=136.55 Aligned_cols=257 Identities=18% Similarity=0.307 Sum_probs=180.9
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEE-eeC--CCCCcEEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEec---
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRL-CDL--GPGDSVCSVQW-----TREGSYISVGTNLGQVQVWDGTQCKRVRTFG--- 248 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~-~~~--~~~~~V~~v~~-----spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--- 248 (475)
..++...+..+++|+...+..... +.. -.....+|-+| .+++--|.+|-.-|.|++.|....+..+.+.
T Consensus 136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r 215 (636)
T KOG2394|consen 136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER 215 (636)
T ss_pred CEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc
Confidence 466666778899998875322111 000 01122233344 3467778899999999999976533322222
Q ss_pred -CCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE--cCCCCEEEEEeCCCcEEEEECC
Q 011916 249 -GHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW--SHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 249 -~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
-.+..|+|+.| +...++++-.+|.+.+||... ....+...| .+++..++.....+. .
T Consensus 216 ~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~~f~i~t~ksk------~ 278 (636)
T KOG2394|consen 216 LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGDQFAILTSKSK------K 278 (636)
T ss_pred cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCCeeEEeeeecc------c
Confidence 23478999999 458888899999999998731 111222222 235555554332111 1
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
+..++..+.-..+.|...+|+|||++|++++ .||.++|||..+.+++...+ --+...|++|+|||++|++ |.+|
T Consensus 279 ~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt--GGED 353 (636)
T KOG2394|consen 279 TRNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT--GGED 353 (636)
T ss_pred cCCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe--cCCc
Confidence 2245655555667899999999999887765 89999999999887766553 3467899999999999999 9999
Q ss_pred CeEEEEECCCCceEEEecCCCcceEEEEECC-------------------------------C----C------------
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-------------------------------D----G------------ 434 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-------------------------------d----g------------ 434 (475)
.-|.||.+...+.++.-++|...|..++|.| + +
T Consensus 354 DLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v 433 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSV 433 (636)
T ss_pred ceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccce
Confidence 9999999999999999999999999999972 0 1
Q ss_pred -CEEEEEeCCCCEEEEecCCCCCCC
Q 011916 435 -QTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 435 -~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
-.|.+.+.|-.+.+||+......+
T Consensus 434 ~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 434 TYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred EEEeecccccceEEEEecchhhccc
Confidence 157788899999999997655443
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-13 Score=144.13 Aligned_cols=259 Identities=17% Similarity=0.250 Sum_probs=176.9
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-------eeeEEecCCCCceEEEEe--CCC
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQC-------KRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
|+...--+.++. +|...|..++.++. +.++++|+.||+|++|+...- +...++.-...++.++.. +++
T Consensus 1034 W~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 555443333333 67778888888774 499999999999999997531 233334334556666655 789
Q ss_pred EEEEEeCCCcEEEEECCCCC--c----cEEEecCcc-CCEEE-EEEcC-CCC-EEEEEeCCCcEEEEECCCCceeEEEe-
Q 011916 263 ILSSGSRDRNILQHDLRVSS--D----YICKLAGHK-SEVCG-LKWSH-DDR-ELASGGNDNQLLVWNQHSQQPTLRLT- 331 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~--~----~~~~~~~h~-~~V~~-l~~s~-~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~- 331 (475)
.+|.++.||.|.+.++.... + .......+. +.+.+ .++.. .+. .|+.+..-+.|..||++.......++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999997411 1 111112222 22333 33332 333 78888888999999999876655443
Q ss_pred -ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCC---eEEEEEec-CCCeE
Q 011916 332 -EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVN---ELVSTHGY-SQNQI 404 (475)
Q Consensus 332 -~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~---~l~~~~g~-~dg~I 404 (475)
...+.|++++.+|.+.+++. |+..|.+.+||++-+.++....++ .++..+..+|-.. ..+++ |. ..+.|
T Consensus 1192 ~~~hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCce
Confidence 35688999999999995555 569999999999999998888654 5677777766444 44443 55 78899
Q ss_pred EEEECCCCceEEEecCC-------------------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 405 MVWKYPSMAKVSTLTGH-------------------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+|++.++.....+-.. .-......+..-+.++.+|+.|..||.||.......
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99999988665544322 111222333344568999999999999999876655
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=9.2e-12 Score=122.87 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=179.5
Q ss_pred CeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--e--eeEEecCCCCceEEE
Q 011916 188 TCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----LGQVQVWDGTQC--K--RVRTFGGHQTRAGVL 257 (475)
Q Consensus 188 ~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----dg~v~iwd~~~~--~--~~~~~~~h~~~v~~l 257 (475)
+.|++|++ +++++..............++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68888887 6666655443334566778999999999999877 478999987653 3 333333233444556
Q ss_pred Ee--CCCEEEEEe-CCCcEEEEECCCCCccEEE--ec-----------CccCCEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 011916 258 AW--NSRILSSGS-RDRNILQHDLRVSSDYICK--LA-----------GHKSEVCGLKWSHDDRELASGGN-DNQLLVWN 320 (475)
Q Consensus 258 ~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~--~~-----------~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd 320 (475)
+. ++++|+++. .+|.|.++++...+..... .. .......++.++|+++++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 66 567777776 5899999999865543332 11 12345789999999998888653 34799999
Q ss_pred CCCCc--ee--EEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CCc--eeeeecC-------CCCeeEE
Q 011916 321 QHSQQ--PT--LRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NGH--QLNSVDT-------GSQVCNL 384 (475)
Q Consensus 321 ~~~~~--~~--~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~~--~~~~~~~-------~~~v~~l 384 (475)
+.... .. ..+. ......+.++|+|++++++++.. .++.|.++++. ++. .+..+.. ......+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 97654 21 1222 24456789999999999988876 89999999988 442 2222221 1257889
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCC--C--ceEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCCC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPS--M--AKVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFPS 454 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~--~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~ 454 (475)
.++|+|++|+++ ....+.|.+|++.. + +.+..+.........++++|+|++|+++.. ++.|.+|+++..
T Consensus 251 ~ispdg~~lyvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 251 AISPDGRFLYVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EE-TTSSEEEEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEecCCCEEEEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 999999999986 44688999999932 2 334444433445799999999999998874 678999998643
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=8.2e-13 Score=134.67 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=153.6
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC---CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR---DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.. +...+.+..|...+.+.+| +++.|+..+. +..|.+||+.. +. ...+..+.+.+....|+|||+.
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCCE
Confidence 78888875 4445566678888999999 4677776653 46899999974 32 2345556677888999999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. .+.++ .|++||+.++.. ..+..+........|+|||+.++++........|++||+.+++..........+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 764 45555 488889987764 45666666677899999999888765322234799999887765544444556777
Q ss_pred EEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC------CCEEEEecCCCCC
Q 011916 384 LAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD------ETLRFWNVFPSLK 456 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D------g~I~iW~~~~~~~ 456 (475)
..|+|+|+.|+.+.... ...|.+||...+.. ..+. ....+..+.|+|||+.|+..+.+ ..|+++++..+..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 89999999998854222 24688899765443 3333 22346788999999988776543 2577778766544
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.2e-13 Score=134.94 Aligned_cols=218 Identities=20% Similarity=0.170 Sum_probs=150.3
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
..|.+||... ...+.+..+...+.+.+| +++.|+..+.+ ..|.+||+.. +. ...+..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~-~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQ-RELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CC-EEEeccCCCCccCceECCCCC
Confidence 3688999754 444556667778888999 46777777633 4699999973 32 233344455566889999999
Q ss_pred EEEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCC
Q 011916 306 ELAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 306 ~las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~ 380 (475)
.|+. .+.+| .|++||+.+++. ..+..+......++|+|||+.++++.. .++ .|+++|+.+++.......+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeecCCCC
Confidence 7764 44555 699999988764 445555555678999999998887753 333 477788877765444334445
Q ss_pred eeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
....+|+|+|+.|+.+.... ...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.....
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 56789999999998864321 236999999877654 443 22345567999999988876653 3577888865443
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=3.8e-13 Score=121.04 Aligned_cols=143 Identities=14% Similarity=0.311 Sum_probs=108.7
Q ss_pred CcEEEEECCCCCccEEEecC-ccCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 271 RNILQHDLRVSSDYICKLAG-HKSEVCGLKWSHDDRELASG--GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~lasg--~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
+...+|.++........+.- ..+.|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+..|.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 34566666544444444433 34579999999999987654 456799999997 55666653 56778999999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec----CCCeEEEEECCCCceEEEe
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY----SQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~----~dg~I~iwd~~~~~~~~~l 418 (475)
+++++|.|...|.|.+||+++.+.+...++.. +..++|+|+|+++++++.. .|+.++||++. |+.+...
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 88888766667899999999999988887654 7899999999999997443 47889999984 5555443
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2e-13 Score=124.56 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=164.4
Q ss_pred ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 247 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.....+|+|.+|+ ...++.+..+..|.||...... +...++..|...|++++|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345789999996 5789999999999999987544 4667889999999999999999999999999999999984
Q ss_pred C---CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-----eeecCCCCeeEEEEcCCCCeEE
Q 011916 323 S---QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL-----NSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~---~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~-----~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
. .++...+..+..+++++.|+|.+. .+++|+ ..+.|.+|-++...-- ......+.|.++.|+|++-.|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 3 356667778999999999999988 555554 6788888877654332 1223567899999999998888
Q ss_pred EEEecCCCeEEEEEC------------------CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 395 STHGYSQNQIMVWKY------------------PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~------------------~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ |+.|+..+||.. +-++.+.++....+.|..+.|+|+|..|+-.+.|+++.+=|-....
T Consensus 163 a--Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 A--GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred c--cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 8 999999999863 1234445554566789999999999999999999999998887665
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4e-12 Score=129.07 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=149.1
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEe---CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGS---RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.+||.+.... +.+..+...+...+|+ |+.|+..+ .+..|.+||+.. +. ...+....+.+..+.|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCCE
Confidence 688898775543 3344566788889994 67776554 245789999873 32 2233333344567899999998
Q ss_pred EEEE-eCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCe
Q 011916 307 LASG-GNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQV 381 (475)
Q Consensus 307 lasg-~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~v 381 (475)
|+.. +.+| .|++||+.+++.. .+..+...+....|+|+|+.|+++.. .++ .|+++|+.+++...........
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecCCCCc
Confidence 8865 3344 5999999887654 44445566788999999998877653 333 5666688777654443344556
Q ss_pred eEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC---EEEEecCCCCCC
Q 011916 382 CNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET---LRFWNVFPSLKA 457 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iW~~~~~~~~ 457 (475)
....|+|+|+.|+.+... ....|++||+.+++.. .+... .......|+|||++|+.++.++. +.+++++.....
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 678999999999885332 1246889999887643 34322 22346789999999999988765 677788655544
Q ss_pred CC
Q 011916 458 PA 459 (475)
Q Consensus 458 ~~ 459 (475)
..
T Consensus 412 ~l 413 (429)
T PRK03629 412 RL 413 (429)
T ss_pred EC
Confidence 33
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.6e-13 Score=126.93 Aligned_cols=216 Identities=15% Similarity=0.218 Sum_probs=170.6
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCC--CeEEEEECCCCeeeEEec
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGS-YISVGTNL--GQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~-~la~g~~d--g~v~iwd~~~~~~~~~~~ 248 (475)
+.-..+.++++-.+|.+.+|....+. -..+..+.....+..+.-++... .+|+|+.. ..+.|||++..+++.+-+
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 33445678888889999999998443 11222223346677777777554 55668888 789999999887665544
Q ss_pred CCC---------CceEEEEe-C---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 249 GHQ---------TRAGVLAW-N---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 249 ~h~---------~~v~~l~~-~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
.-. -.++++.| . ...|++++.-+.+++||.+....++..+..-...|.++..-|+++++++|..-+.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 221 13445666 2 4789999999999999999888899999888999999999999999999999999
Q ss_pred EEEEECCCCceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCe
Q 011916 316 LLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 316 I~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
+..+|++.++.... +.+..+.|.+|..+|.++ +++++| -|+.++|+|+.+.+++...-..+.++++.+.++-+.
T Consensus 271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred hheecccCceeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 99999999988766 788899999999999988 555555 899999999999888888878888888888765443
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=138.51 Aligned_cols=229 Identities=11% Similarity=0.187 Sum_probs=188.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
.-..+.++.+|++|+.|+..|.|-.+|..++++...+. -...|..+.| +...+++......+.|||-. +..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~--GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN--GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC--CcEEeehh
Confidence 34578899999999999999999999999998887765 2356788888 45555555667889999975 55666666
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.| ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|.+. ++-.|. ..|+|.+|.....
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~Gh--snGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGH--SNGTVSLWSPNSK 283 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcC--CCceEEecCCCCc
Confidence 55 4588999999988999999999999999999999998888889999999999877 677765 8999999999888
Q ss_pred ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
+++..+ .|.++|.++++.++|.++++ .+.|..++|||++....+.++.. ......+++|..| .|| ++....|.|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaT--tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~i 358 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMAT--TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQI 358 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEee--cccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeeee
Confidence 877665 68899999999999999999 66899999999999887776654 3456778888776 344 445557999
Q ss_pred Eec
Q 011916 449 WNV 451 (475)
Q Consensus 449 W~~ 451 (475)
|.=
T Consensus 359 w~d 361 (545)
T KOG1272|consen 359 WKD 361 (545)
T ss_pred ehh
Confidence 964
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=3e-13 Score=123.75 Aligned_cols=277 Identities=19% Similarity=0.271 Sum_probs=198.7
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecCCC
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
.++||+ +.+|+..+-.+.|-|.++-++.+++.. -+.|..+.|..|..+++++ ..++.|++|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 567886 788888888999999999887777642 4678889999988766654 568899999999988888888888
Q ss_pred CceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC----------------
Q 011916 252 TRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---------------- 312 (475)
Q Consensus 252 ~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---------------- 312 (475)
..+..++|+ | ++|.+...+-.|.+|.+.+..... +..-+..+.+++|++||++.+..+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 999999995 5 678888899999999997443322 2223344678888888888776653
Q ss_pred --------------------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011916 313 --------------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 313 --------------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
++.+.+||.--.-.+..+ ...-.+..++|+|.++ +++.|+ .|+.+++.|--+.+..
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGs--yD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGS--YDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccc-eEEeec--cchhhhhhceeeeeeh
Confidence 123344443211111111 2235789999999888 556654 9999888764322110
Q ss_pred e------------------------------------------------------------eec-------CCCCeeEEE
Q 011916 373 N------------------------------------------------------------SVD-------TGSQVCNLA 385 (475)
Q Consensus 373 ~------------------------------------------------------------~~~-------~~~~v~~l~ 385 (475)
. .++ ....+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0 000 012366789
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
|++|..++++....--+.+.+||++..+.-..+. ...+|....|.|....|+.+.+...+++|..........
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 9999999998665566889999998877655543 456799999999999999888888899999876544443
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=3.1e-12 Score=117.23 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=185.4
Q ss_pred eeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.-+.|..+ .++.+.. ++.|.+|++...+....++ +....+.+++|+|||+.|. +...+-.|.||.+.+.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 344788876 3444443 7899999999998887777 4467899999999996554 556688999999987665432
Q ss_pred ecCCCCceEEEEe--CCCEEEEEeC------------------------------------CCcEEEEECCCCCccEEEe
Q 011916 247 FGGHQTRAGVLAW--NSRILSSGSR------------------------------------DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 247 ~~~h~~~v~~l~~--~~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~ 288 (475)
.-....+..++| +|++.+..++ +..+.+||--...+.. .
T Consensus 130 -~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--a 206 (447)
T KOG4497|consen 130 -PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--A 206 (447)
T ss_pred -cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--e
Confidence 112223344444 3454444332 2345566643221111 1
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ------------------------------------------- 325 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~------------------------------------------- 325 (475)
..-.-.+..++|+|.+++|++|+.|+.++|.+--+.+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 1122468899999999999999999998875421100
Q ss_pred -----------------eeEEEe------ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCee
Q 011916 326 -----------------PTLRLT------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382 (475)
Q Consensus 326 -----------------~~~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~ 382 (475)
.++.++ ...-.+.-++|++|..++++ -....-+.+-+||++..+....+....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT-rnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT-RNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee-ecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 000111 12234667899999885444 322345779999999888877777889999
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...|+|....|++.+ ....+++|.... .......+..-.|..++|..+|..++..+.|... +=-+.+....
T Consensus 366 af~WdP~~prL~vct--g~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc-~a~ve~e~es 436 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCT--GKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC-VAIVEDEDES 436 (447)
T ss_pred EEEeCCCCceEEEEc--CCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCceE-EEEecCCccc
Confidence 999999999999844 456799998654 3333344445779999999999999999998643 2244444333
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5e-12 Score=123.49 Aligned_cols=296 Identities=13% Similarity=0.146 Sum_probs=210.0
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-----eC-----CCeEEEEECC
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-----TN-----LGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-----~~-----dg~v~iwd~~ 239 (475)
++..++|++ .++|.+.+..|.|++..++..+... ... .+.++.|+|.|.+|.+= .. .-.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 566777776 7999999999999999998733333 223 89999999999998872 11 2347899999
Q ss_pred CCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC--CEEEE-----Ee
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD--RELAS-----GG 311 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~las-----g~ 311 (475)
++.....+......-++..|.. ..|++--..+.+++|++.........+ |...|..+.+||.+ ..+|+ +|
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCC
Confidence 9655555543222226777753 444444456789999998533333333 57789999999963 35554 34
Q ss_pred CCCcEEEEECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCC---------CCeEEEEECCCCceeeeecCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTA---------DRCIRFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~---------d~~I~iwd~~~~~~~~~~~~~~ 379 (475)
.-..|+||..........+ .-....-..+.|++-|..||+...-.- ..++++.++....+...+...+
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 5568999988733221111 112333456889988887766543112 3578999998667777788899
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
+|.++.|++++++++++.|+.--.+.|||++ +..+..+ .+++-+++-|+|.|++|+.+|-+ |.|-|||+...++
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 9999999999999999999999999999985 4555554 35667889999999999998765 7899999999777
Q ss_pred CCCcccCCc---cccccCccc
Q 011916 457 APALVKDTS---LWSLGRTHI 474 (475)
Q Consensus 457 ~~~~~~~~~---v~s~~~~~i 474 (475)
......... -|+.++++|
T Consensus 349 i~~~~a~~tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 349 IAKFKAANTTVFEWSPDGEYF 369 (566)
T ss_pred ccccccCCceEEEEcCCCcEE
Confidence 666543332 377776654
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.1e-13 Score=125.57 Aligned_cols=245 Identities=12% Similarity=0.157 Sum_probs=183.3
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEe------cCCCCceEEEEeCCCEEEEEeCCCcEEEEECC
Q 011916 208 PGDSVCSVQWTREGS--YISVGTNLGQVQVWDGTQCKRVRTF------GGHQTRAGVLAWNSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 208 ~~~~V~~v~~spdg~--~la~g~~dg~v~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 279 (475)
....|.+++|.-+++ .|...+.+-.+..+.+........+ ......|..+......|++|-.+|.+.+|..+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 346788888876553 4444446667777777665554433 34566777777777889999999999999987
Q ss_pred CCC---ccEEEecCccCCEEEEEEcC-CCCEEEEEeCC--CcEEEEECCCCceeEEEecc---------ccceeEEEECC
Q 011916 280 VSS---DYICKLAGHKSEVCGLKWSH-DDRELASGGND--NQLLVWNQHSQQPTLRLTEH---------TAAVKAIAWSP 344 (475)
Q Consensus 280 ~~~---~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~D--g~I~iwd~~~~~~~~~~~~h---------~~~v~~l~~sp 344 (475)
... .....+..+ ..+..+.-++ +...+|+||.. +.+.|||+...+.++.-+.- .-.++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 332 223333333 4466666666 44567779988 88999999988665543321 23467888877
Q ss_pred C--CCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ec
Q 011916 345 H--QSSLLASGGGTADRCIRFWNTSNGH-QLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LT 419 (475)
Q Consensus 345 ~--~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~ 419 (475)
. .. -++++. .-+.+++||++.++ ++..++ ....+.++...|.++.+++ |...+++..||.+.+..... +.
T Consensus 213 g~~~~-~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 213 GSPNY-KFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred CCCCc-eEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccC
Confidence 6 44 455543 79999999998764 566675 3578999999999999999 88999999999999988776 88
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+-.+.|.++..+|.+++|++++-|..|||+|+.+.....
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 899999999999999999999999999999999855443
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=9.9e-12 Score=122.84 Aligned_cols=243 Identities=12% Similarity=0.148 Sum_probs=163.3
Q ss_pred EecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecCC
Q 011916 174 VDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 174 l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.++++ .+++++.|+.|.++|+.+.+++..+.. .....++++++||++++++. ..+.+.|+|.++.+.++.+...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 567775 366667799999999999999888864 45678999999999999876 4799999999999999887532
Q ss_pred -------CCceEEEEe--CCC-EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEE
Q 011916 251 -------QTRAGVLAW--NSR-ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVW 319 (475)
Q Consensus 251 -------~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iw 319 (475)
..++.++.. ... ++++.-..+.|.+.|......................|+|++++++.+ ..++.|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 346666654 234 555555668999989875444433444445567889999999987665 456688888
Q ss_pred ECCCCceeEEE-------------------------------------------------------eccccceeEEEECC
Q 011916 320 NQHSQQPTLRL-------------------------------------------------------TEHTAAVKAIAWSP 344 (475)
Q Consensus 320 d~~~~~~~~~~-------------------------------------------------------~~h~~~v~~l~~sp 344 (475)
|.++++.+..+ ...... .-+..+|
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence 88765433221 111111 3456789
Q ss_pred CCCcEEEE-ecCCCCCeEEEEECCCCceeeeecCCC--CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 345 HQSSLLAS-GGGTADRCIRFWNTSNGHQLNSVDTGS--QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 345 ~~~~ll~s-g~Gs~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
+++++.+. ..+...+.|.++|.++.+.+..+.... .+..+.|+++|+++.++....++.|.+||..+.+.+..++
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99988886 112257899999999998888876443 4999999999999998767666799999999999998886
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=5.3e-12 Score=128.25 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=154.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|+++|........+. .+...+.+.+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.+++| +++
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 36899998766655555 455678899999999999988754 4799999988765433 334555666788 455
Q ss_pred EEE-EEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeccccc
Q 011916 263 ILS-SGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 263 ~l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
.|+ +.+.++ .|.+||+.. .....+..+........|+|||+.|+..+.. + .|+++|+.+++. ..+..+...
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDG--KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCC--CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 554 555554 588888863 2344455555555677999999988876543 2 688889887654 344445566
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceE
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKV 415 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~ 415 (475)
+..+.|+|+++.++++........|.+||+.++.... +..........|+|+++.|+.+..... ..+++.+. ++...
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~ 401 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFR 401 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCcee
Confidence 7889999999988887531112379999998865433 322333456789999999988533221 24555554 34444
Q ss_pred EEecCCCcceEEEEE
Q 011916 416 STLTGHSLRVLYLAT 430 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~ 430 (475)
..+..+.+.+..++|
T Consensus 402 ~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 402 ARLPLGNGDVREPAW 416 (417)
T ss_pred eECCCCCCCcCCCCC
Confidence 555544445554444
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2.5e-14 Score=136.08 Aligned_cols=260 Identities=17% Similarity=0.246 Sum_probs=202.8
Q ss_pred eEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..++++.+ .++.+|.-|.|-.+|..++++...+. -...|.++.|-.+.+++|++-. .-++||| ..|..++.++.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehhh
Confidence 34666654 68888889999999999998776653 4678999999999999988766 6799999 55666666664
Q ss_pred CCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
| ..|..+.|-+ -+|++++..|.+.--|+. .++.+..+..-.+.+..++-+|-+..+-+|...|+|.+|.....+++
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeec-hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 4 4677788854 567788899999999998 67777778878888999999998889999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
..+..|.++|.+|++.++|.+++++| .|+.++|||+++...+.++........+++|..|- |++ + ....|.||
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~--~-~G~~v~iw 359 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LAL--S-YGDHVQIW 359 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccc-eee--e-cCCeeeee
Confidence 99999999999999999999888876 79999999999999888887777888899987654 333 2 34568899
Q ss_pred EC-CCCc--eEEEecCC--CcceEEEEECCCCCEEEEEeCCC
Q 011916 408 KY-PSMA--KVSTLTGH--SLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 408 d~-~~~~--~~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
.= -.+. .-..+-.| .+.|..+.|.|-...|-.|...|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 52 2211 11111122 34788999988655555444433
No 234
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.9e-13 Score=129.11 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=145.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA- 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 289 (475)
.+++|+.+|..|++|+.||.++||+......+.....|...|.++.| ++.+|++-+.| ...||+.+.. ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 68999999999999999999999999998888888899999999999 57899999999 9999999844 4443333
Q ss_pred -CccCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCce-----eEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 290 -GHKSEVCGLKWSHDD-----RELASGGNDNQLLVWNQHSQQP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~-----~~lasg~~Dg~I~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
.-......+.|+.|+ ..++....-+.|..||+..... ..+.......|.+++.+++|++ ++.| +.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-~AlG--T~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-LALG--TMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-EEEe--ccC
Confidence 223345667788776 2333344456677776653221 1222223457999999999994 5554 489
Q ss_pred CeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 359 RCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|.|.|++..+.+++..+. |..-|+.+.|+|+.++++.+ +.+..+.|..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv--Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV--SSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc--ccCCceeEEEEe
Confidence 999999999998888774 67789999999999999984 456666666553
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1e-11 Score=126.59 Aligned_cols=236 Identities=15% Similarity=0.106 Sum_probs=155.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|+++|.+.+....+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....| +|+.
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 5888898877655554 456788999999999999887643 368999998876543 2323344456777 4666
Q ss_pred EE-EEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCceeEEEeccccce
Q 011916 264 LS-SGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D--NQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D--g~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+ +...+| .|.++|+.. + ....+..+........|+|||+.|+..+. + ..|+++|+.+++... +.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 65 555555 577788873 2 33445556666777899999998877654 2 368888888776432 22222333
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 416 (475)
....|+|+++.++.+........|.+||+.+++..... .........|+|+|+.++.+... ....|++++... ....
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~ 411 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRL 411 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceE
Confidence 46789999998888764112236889999888654332 22233467899999999885332 123577777743 3344
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+..+.+.+...+|+|
T Consensus 412 ~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 412 PLPTAQGEVREPSWSP 427 (430)
T ss_pred ECcCCCCCcCCCccCC
Confidence 5555556677777876
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.5e-12 Score=127.57 Aligned_cols=214 Identities=19% Similarity=0.158 Sum_probs=139.3
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
..|.++|.. +...+.+..+...+.+.+|+ ++.|+..+.+ ..|.+||+.. +.. ..+....+.+....|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 357777763 44445566677888889994 6777766543 3599999973 332 23333445667899999999
Q ss_pred EEEE-EeCCCcEEEE--ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE--ECCCCceeeeecCCCC
Q 011916 306 ELAS-GGNDNQLLVW--NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW--NTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 306 ~las-g~~Dg~I~iw--d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw--d~~~~~~~~~~~~~~~ 380 (475)
.|+. .+.++...|| |+..+. ...+..+........|+|||+.+++++. .++...+| ++.++........+..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCCCC
Confidence 8874 5667765555 554444 4555556666678899999998887653 34444455 5555554333323334
Q ss_pred eeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC-C--EEEEecC
Q 011916 381 VCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE-T--LRFWNVF 452 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-~--I~iW~~~ 452 (475)
.....|+|+|++|+.++... ...|++||+.+++.. .+..+ .......|+|||+.|+.++.++ . +.+-++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 55689999999998753211 126999999887654 33322 2346789999999988877544 2 4455553
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.5e-11 Score=125.43 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=153.9
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|+++|........+. .....+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ....+.....+| +++.
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCE
Confidence 6888888776654443 456788899999999999887543 2 588899988765332 222233345677 5665
Q ss_pred EE-EEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCceeEEEeccccce
Q 011916 264 LS-SGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D--NQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D--g~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+ +.+.+|. |.++|+. ......+..+........|+|||+.|+..+. + ..|+++|+.+++... +.......
T Consensus 276 La~~~~~~g~~~Iy~~dl~--tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIA--TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECC--CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 54 5566775 6666775 3334555556666778899999998877654 3 357777887776433 32222333
Q ss_pred eEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCc
Q 011916 338 KAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMA 413 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~ 413 (475)
...+|+|+|++++.+.. .++ .|.++|+.+++..... .........|+|+|+.|+.+.. .++ .+++++. ++.
T Consensus 353 ~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~lt-~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQVLT-STRLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEEcc-CCCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCC
Confidence 45799999998888754 333 5677888887654322 2222335689999999887543 333 4777786 555
Q ss_pred eEEEecCCCcceEEEEECC
Q 011916 414 KVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~sp 432 (475)
....+..+.+.+...+|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6666766667778888887
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=4e-12 Score=124.16 Aligned_cols=240 Identities=16% Similarity=0.270 Sum_probs=178.5
Q ss_pred CCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee----------------------------EEecCCC-----
Q 011916 206 LGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRV----------------------------RTFGGHQ----- 251 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~----------------------------~~~~~h~----- 251 (475)
+++...-+.|..+|||+|+ |+|...-.|++||+....+. +.+..|.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4677788899999999975 67888899999998753221 1111111
Q ss_pred --CceE----EEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 252 --TRAG----VLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 252 --~~v~----~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
-+|. .++++ ..-|+.++....|+-+++. .+..+..+....+.++++..++-..+|++|+.+|.|..||.+.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEcc-ccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1222 22222 1234555555677778887 6777777777778999999999888999999999999999997
Q ss_pred CceeEEEec------ccc-----ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCC-
Q 011916 324 QQPTLRLTE------HTA-----AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKN- 389 (475)
Q Consensus 324 ~~~~~~~~~------h~~-----~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~- 389 (475)
...+..+.. |.+ .|+++.|+.+|-.+.+ |+.+|.+.|||+++.+++..-+|. -+|..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV---Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV---GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEe---eccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 765554432 333 4999999998765444 669999999999999988877665 57889999776
Q ss_pred -CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 390 -VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 390 -~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
++.+++ .....++|||-.+++....+.. +..++.+++-|++.+++++-.++.+..|=+..
T Consensus 284 ~q~~v~S---~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 284 QQNKVVS---MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEe---cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 444554 3567899999999999888874 44499999999999999998888776665543
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.7e-12 Score=124.38 Aligned_cols=262 Identities=15% Similarity=0.220 Sum_probs=178.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RI 263 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~ 263 (475)
-.+.+|+++++.....+....... .+..|+.|..+.|-- ..+.|++|+....+.+ .-.-|...|+.+.+++ ..
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred CceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCCce
Confidence 368899999955444443322222 688999888654433 3468999998773322 2223567777777752 34
Q ss_pred EEE-----EeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEE---EEEeCC---------CcEEEEECCCC
Q 011916 264 LSS-----GSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDREL---ASGGND---------NQLLVWNQHSQ 324 (475)
Q Consensus 264 l~s-----gs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l---asg~~D---------g~I~iwd~~~~ 324 (475)
+++ ++.-+.++||.+.... ..+..-......=..+.|++-|+-| ++..-| .++++.++...
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 443 3556789999886211 2222222233445678999877632 233333 36888888844
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec--CCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY--SQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~--~dg 402 (475)
.....+ ...++|.++.|+|+++.+.++- |..--++.|||++ +.++..+. .++-.++-|+|.|++++.+ |+ -.|
T Consensus 262 s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lA-GFGNL~G 336 (566)
T KOG2315|consen 262 SVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLA-GFGNLPG 336 (566)
T ss_pred eEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEe-ecCCCCC
Confidence 443333 3579999999999999777776 6788999999975 55665553 4556788999999998876 54 468
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCCCCCCC
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~~~~~~ 459 (475)
.|-|||+.+.+++..+.... -+...|+|||++|+|++. |..++||+.........
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred ceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 99999999999888887544 355799999999999865 78899999987655444
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=4.6e-12 Score=114.52 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=189.0
Q ss_pred CCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCC------ce
Q 011916 187 GTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTR---EGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQT------RA 254 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~sp---dg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------~v 254 (475)
.|.+++|++.+.+...+-.+ .....+..+.|.. +|. .|+.+...|.|+++..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46789999887765552221 2346677888864 555 567777889999998765555444443221 23
Q ss_pred EEEEeC--CCEEEEEeCCCcEEEEECC-CCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEE
Q 011916 255 GVLAWN--SRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQQPTLR 329 (475)
Q Consensus 255 ~~l~~~--~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~~~~~~ 329 (475)
.++.|+ +..++++..+|.+.+-+.. ..-+.++..+.|.-++...+|+. +.+.+.+|+.|+.+..||++ .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 455563 6789999999999855543 12234457889999999999987 55689999999999999999 3344443
Q ss_pred -EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 330 -LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 330 -~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+.|...|.+|.-+|.....+++|+ .|.+|++||++ -++++..-..++.|..+.++|.-...+.+ .+.-+-.+|.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNGAKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcCceEE
Confidence 4558999999999998888899976 99999999999 58888888888999999999975532222 3344556666
Q ss_pred ECCCC--c---eEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEE-EEecCCCC
Q 011916 408 KYPSM--A---KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLR-FWNVFPSL 455 (475)
Q Consensus 408 d~~~~--~---~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~-iW~~~~~~ 455 (475)
+.... + .....+.|.+-+..-.|.....+|+|++. |..|+ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred EecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 66443 2 34455678887888888655567888764 77655 77655443
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.5e-11 Score=122.83 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=154.2
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE---EEeCCC--eEEEEECCCCeeeEEecCCCCceEEEEe--C
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS---VGTNLG--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la---~g~~dg--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~ 260 (475)
..|++.|.+.+....+.. ....+.+-.|+|||+.++ +...+| .|.+.++.+++..+. ....+.....+| +
T Consensus 165 ~~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCC
Confidence 378889988877666543 345567889999997532 444443 577778877754333 223334445667 5
Q ss_pred CCEEEEEeC-CC----cEEEEECCCC--CccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCc--EEEEECCC-CceeEE
Q 011916 261 SRILSSGSR-DR----NILQHDLRVS--SDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQ--LLVWNQHS-QQPTLR 329 (475)
Q Consensus 261 ~~~l~sgs~-dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~--I~iwd~~~-~~~~~~ 329 (475)
|+.|+..+. +| .+.+|++... +........+........|+|||+.|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 766665542 33 3344666532 222233333333456789999999888765 4564 44555542 233444
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEe-cCCCeEEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHG-YSQNQIMVWK 408 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g-~~dg~I~iwd 408 (475)
+..+...+....|+|||+.|+.+........|.+||+.+++..........+....|+|+|+.|+.+.. .....|+++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 555556678899999999888876411235799999999887655444456788999999999886432 2345789999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCC
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
+..++... +....+.+...+|+|-.
T Consensus 402 l~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 402 LITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEE-eecCCCcccCceecCCC
Confidence 98776543 33344556778888753
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=3.2e-12 Score=117.82 Aligned_cols=245 Identities=15% Similarity=0.284 Sum_probs=178.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCC------------CceEEEEe----CCCEEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQ------------TRAGVLAW----NSRILSS 266 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~----~~~~l~s 266 (475)
..+-|.+|.|...|.+||+|..+|.|.++.-+... ....++.|. ..|..+.| +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999754322 233444443 35778888 3468888
Q ss_pred EeCCCcEEEEECCCCCccE-----------------------------------EEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 267 GSRDRNILQHDLRVSSDYI-----------------------------------CKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~-----------------------------------~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
.+.|++|++|.+....... .--.+|...|.+|.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8999999999886432111 00135778899999999999888875
Q ss_pred CCCcEEEEECCCCceeEE---Eec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee----e---c
Q 011916 312 NDNQLLVWNQHSQQPTLR---LTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS----V---D 376 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~---~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~----~---~ 376 (475)
|=.|.+|++.-...-.. ++. -..-|++..|+|....+++-.+ ..|+|++.|++....... + .
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhcccc
Confidence 57899999874332222 222 2346889999999887777655 799999999985432111 1 0
Q ss_pred ----------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEecCCC------------cce---EEEEE
Q 011916 377 ----------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGHS------------LRV---LYLAT 430 (475)
Q Consensus 377 ----------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h~------------~~V---~~l~~ 430 (475)
.-+.|..+.|++.|+++++ -+-.+|++||+. ..+++.+.+-|. ..| ..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryils---RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILS---RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEE---eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1246889999999999997 234789999994 456666666553 222 45789
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+-++.+++||+....++++++..+.+..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred cCCcceEecccccceEEEecCCCCccee
Confidence 9999999999999999999977666543
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=6.6e-13 Score=128.65 Aligned_cols=164 Identities=19% Similarity=0.291 Sum_probs=127.4
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC--------------C
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ--------------C 241 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~--------------~ 241 (475)
.++.+=..|.|++.|....++.+++.. -....|+|+.|-|. ...++++-.+|.+++||.+. +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 466666678899888877555544432 12478999999994 45677788899999997531 1
Q ss_pred eeeE--------------EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 242 KRVR--------------TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 242 ~~~~--------------~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.... .+..-.+.|..++| +|.+|++.+.||.++|+|.. ..+.+..++..-+...|++|||||+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHHHHhhccceEEEEEcCCcc
Confidence 1111 11112345666777 57999999999999999998 5666666777778899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp 344 (475)
+|++|++|..|.||.+...+.+..-.+|...|..|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999899999999999983
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=7.4e-10 Score=107.37 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=169.4
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEecCCCC-----
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----------LGQVQVWDGTQCKRVRTFGGHQT----- 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h~~----- 252 (475)
+.|++.|..+.+++..+..+.... .+ ++|||+.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999999887654333 34 9999998888766 68999999999999988873222
Q ss_pred ----ceEEEEeCCCEEEEEe-C-CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc
Q 011916 253 ----RAGVLAWNSRILSSGS-R-DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-QQ 325 (475)
Q Consensus 253 ----~v~~l~~~~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~~ 325 (475)
....++-+|++|++.. . +..|.+.|+. .++.+..+.- .+...-...+.+..++ -+.||......+.. ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCCCc
Confidence 2455666788888765 4 7899999998 4555554443 1122222222222221 12344433333321 11
Q ss_pred ee-E---EEeccccce-eEEEECC-CCCcEEEEecCCCCCeEEEEECCC-----CceeeeecC--------CCCeeEEEE
Q 011916 326 PT-L---RLTEHTAAV-KAIAWSP-HQSSLLASGGGTADRCIRFWNTSN-----GHQLNSVDT--------GSQVCNLAW 386 (475)
Q Consensus 326 ~~-~---~~~~h~~~v-~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~-----~~~~~~~~~--------~~~v~~l~~ 386 (475)
.. . .+..-...+ ..-.|.+ +++.++++ ..|.|.+.|+.. .+.+..+.. .+...-+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 11 0 111100000 0113455 88877776 459999999543 333333221 122334999
Q ss_pred cCCCCeEEEE-Ee-------cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCC
Q 011916 387 SKNVNELVST-HG-------YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~-~g-------~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~ 456 (475)
+++++.++++ ++ ...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|+.+.+.
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999983 32 1236899999999999998874 34789999999999 888766 578899999998887
Q ss_pred CCCc
Q 011916 457 APAL 460 (475)
Q Consensus 457 ~~~~ 460 (475)
...+
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 7665
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=7.1e-11 Score=119.96 Aligned_cols=217 Identities=19% Similarity=0.181 Sum_probs=145.2
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.... ..+.+..+...+...+| +++.|+.+..+ ..|.+||+... . ...+..+.+.+.++.|+|||+.
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~-~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-Q-REKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-C-EEEeecCCCCccceEECCCCCE
Confidence 5888887543 34455556667888888 46777776643 47999999743 2 2333445566778999999997
Q ss_pred EEEE-eCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LASG-GNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 lasg-~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+.. +.++ .|++||+.++.. ..+..+........|+|+++.|+++........|+++|+.+++.............
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~ 326 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNAS 326 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccC
Confidence 7654 4343 699999987754 34444555556789999999887765311234688899888776544445566778
Q ss_pred EEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC---CEEEEecCCC
Q 011916 384 LAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE---TLRFWNVFPS 454 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~I~iW~~~~~ 454 (475)
..|+|+|+.++.+.... ...|.+||+.++.. ..+... .......|+|||++|+..+.++ .+++.+....
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 89999999998853211 12789999887543 233322 2345568999999888877654 3555555443
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.3e-10 Score=118.58 Aligned_cols=218 Identities=16% Similarity=0.157 Sum_probs=144.5
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.+.+. .+.+..+...+....| +++.|+..+.+ ..|.+||+... . ...+....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~-~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-R-REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-C-EEEccCCCCCcCCeEECCCCCE
Confidence 47778876544 3455566778888888 46777665533 36888998733 2 2333334445667899999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. ...++ .|++||+.+++. ..+..+........|+|+|+.++.+........|+++|+.+++.............
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 874 44444 688999988764 34555666677789999999888775311234688889888875443333334456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
..|+|+|+.++.+.. .++ .|.+||+.+++.. .+.. ........|+|||+.|+..+.+ ..|.++++.....
T Consensus 336 ~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEc-cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 789999999988632 233 6889999887543 3332 2223356899999998876653 3467777755443
No 247
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1e-12 Score=117.04 Aligned_cols=156 Identities=25% Similarity=0.373 Sum_probs=121.3
Q ss_pred CCCcEEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCeee----------EEecCCCCceEEEEeCC--CEEEEEeCCCc
Q 011916 208 PGDSVCSVQWTR-EGS--YISVGTNLGQVQVWDGTQCKRV----------RTFGGHQTRAGVLAWNS--RILSSGSRDRN 272 (475)
Q Consensus 208 ~~~~V~~v~~sp-dg~--~la~g~~dg~v~iwd~~~~~~~----------~~~~~h~~~v~~l~~~~--~~l~sgs~dg~ 272 (475)
..+.+.|..|.. ++. +|++|-++|.|.+||+.++..+ .....|..+|.++.++. +.=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 346777877654 333 5677888999999999987433 33347899999999963 34467778888
Q ss_pred EEEEECCCCCccE---EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcE
Q 011916 273 ILQHDLRVSSDYI---CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 273 I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
+..|.+....... ....-..-.|..+..-||++.+|++|.|+.|+||..++..++..++.|.+.|++++|+|+.. +
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-l 307 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-L 307 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-h
Confidence 8899886432211 11222334588889999999999999999999999999999999999999999999999966 6
Q ss_pred EEEecCCCCCeEEEEEC
Q 011916 350 LASGGGTADRCIRFWNT 366 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~ 366 (475)
+++++ .|..|.+|++
T Consensus 308 mAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAAS--KDARISLWKL 322 (323)
T ss_pred hhhcc--CCceEEeeec
Confidence 66655 9999999986
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=7.2e-11 Score=119.55 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=142.6
Q ss_pred EecCCC--C--EEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCC
Q 011916 174 VDWSSQ--N--VLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LG----QVQVWDGTQC 241 (475)
Q Consensus 174 l~ws~~--~--~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg----~v~iwd~~~~ 241 (475)
-.|||+ . ++.++. ...|++.++.+++..++... .+.....+|+|||+.||..+. +| .+.+|++..+
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 589998 3 333443 24799999999987776643 445567899999999887653 23 3444776652
Q ss_pred ---eeeEEecCCCCceEEEEe--CCCEEEEEe-CCCcEEEEE--CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 242 ---KRVRTFGGHQTRAGVLAW--NSRILSSGS-RDRNILQHD--LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 242 ---~~~~~~~~h~~~v~~l~~--~~~~l~sgs-~dg~I~iwd--~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
+.......+.......+| +|+.|+..+ .+|...+|. +...+.....+..+...+....|+|||+.|+..+.+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence 333333333334456677 566666554 567655554 432233345555555677889999999999877543
Q ss_pred ---CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 314 ---NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 314 ---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
..|++||+.+++.. .+......+....|+|+|+.|+.+........|+++|+.+++........+.+...+|+|-.
T Consensus 348 ~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 348 KGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 46999999988754 34333446778999999998887654223567999999888776666556667788888753
No 249
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.43 E-value=2.3e-10 Score=109.80 Aligned_cols=210 Identities=12% Similarity=0.194 Sum_probs=153.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCC-C-C------C---cEEEEE-EcC-CCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLG-P-G------D---SVCSVQ-WTR-EGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~-~------~---~V~~v~-~sp-dg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
..-+.....|.|+++|.++..+.++- ++ . . . +..-+. |++ +|.+++..+. |...|.+...+-.++
T Consensus 278 GkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE
Confidence 46777888999999999998876652 22 0 0 0 111111 444 7899999887 888888877665554
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCC-cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDR-NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
. +|.+.|.-..+ ++.-++.|..|| .+-|+|.+ +..+..+...-+.|.+++.+++|++++.+.....|.+.|+.
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~--~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD--GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecC--CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 3 45666665555 567899999999 89999997 34456666777889999999999999999998999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
++.....-+...+-|..++|+|++++++.+-- |.....|+++|+.+++........+.-.+-+|.|++++|.
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 99876555556788999999999997766431 2345679999999887766554444444555555555543
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=9.7e-11 Score=113.31 Aligned_cols=280 Identities=13% Similarity=0.132 Sum_probs=195.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--------------
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-------------- 231 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-------------- 231 (475)
.++.+..++|||. .+|+......|.+|.-........+ . ...|..+.|+|.++||.+=...+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee--e-cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3466777999997 5677777788999998887744433 3 35789999999999999865433
Q ss_pred -eEEEEECCCCeeeEEecCCCCc--eE-EEEe--CCCEEEEEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcC
Q 011916 232 -QVQVWDGTQCKRVRTFGGHQTR--AG-VLAW--NSRILSSGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSH 302 (475)
Q Consensus 232 -~v~iwd~~~~~~~~~~~~h~~~--v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~ 302 (475)
.+.+||..++..+..+.+...+ .+ -+.| +..+++-. ....+.|+++. ..- ....+. ...|....|+|
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~~lr--~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFKNLR--PVGILDFSISP 183 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchhhcc--ccceeeEEecC
Confidence 4999999999999999876655 33 3444 45444433 34578899873 221 112222 35688899999
Q ss_pred CC--CEEEE-----EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC--------CCCCeEEEEECC
Q 011916 303 DD--RELAS-----GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG--------TADRCIRFWNTS 367 (475)
Q Consensus 303 ~~--~~las-----g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G--------s~d~~I~iwd~~ 367 (475)
.+ ..||. .+.++.++||.+..+..+.+..-....-..+.|.+.|.+|++-.-- .....++++++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 53 34554 4677899999998777665544444555678999999987764310 013568889988
Q ss_pred CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---C
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---E 444 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g 444 (475)
...+....+..++|..++|.|.++.+++++|..+-.+.++|++.. ....+ ....=+.+.|+|.+++++.++-| |
T Consensus 264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCcccc
Confidence 555555556789999999999999999999999999999999866 33222 23333556677777777776654 5
Q ss_pred CEEEEecCCCCC
Q 011916 445 TLRFWNVFPSLK 456 (475)
Q Consensus 445 ~I~iW~~~~~~~ 456 (475)
.|-+|+.....+
T Consensus 341 ni~i~~~~~rf~ 352 (561)
T COG5354 341 NIEIFDPAGRFK 352 (561)
T ss_pred ceEEeccCCceE
Confidence 567777654443
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=5.4e-11 Score=109.83 Aligned_cols=224 Identities=17% Similarity=0.301 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT----QCKRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~----~~~~~~~~~~h~~ 252 (475)
.+.++.++.|..++||-- +.++.-..+......+++++.+.++...|++|-.+|++.-+.+. .....+....|..
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~ 115 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA 115 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence 358999999999999954 44444333322346789999999999999999999999888653 4455666778999
Q ss_pred ceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeE
Q 011916 253 RAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH--SQQPTL 328 (475)
Q Consensus 253 ~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~--~~~~~~ 328 (475)
++..+-|+ ...+++.+.|..+.-.-.+. +..+..+.. ...-.++.+. -.+...|...|.|.+-.+. .-.++.
T Consensus 116 ~v~~~if~~~~e~V~s~~~dk~~~~hc~e~-~~~lg~Y~~-~~~~t~~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~ 191 (404)
T KOG1409|consen 116 RVSAIVFSLTHEWVLSTGKDKQFAWHCTES-GNRLGGYNF-ETPASALQFD--ALYAFVGDHSGQITMLKLEQNGCQLIT 191 (404)
T ss_pred ceeeEEecCCceeEEEeccccceEEEeecc-CCcccceEe-eccCCCCcee--eEEEEecccccceEEEEEeecCCceEE
Confidence 99999996 58899999998876554442 221111100 0000111111 1144455555666554443 445688
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
++.+|.+.+.+++|.+... ++.+|. .|..+.+||+-..+ ......+...|..+...+..+.+++ ...||.|.+
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~-~LfSg~--~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S--~~edg~i~~ 266 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQR-LLFSGA--SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS--CGEDGGIVV 266 (404)
T ss_pred EEcCcccceEEEEEcCCCc-EEEecc--ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee--ccCCCeEEE
Confidence 8999999999999999877 566644 89999999986544 3333456677888888888888888 778999999
Q ss_pred EECC
Q 011916 407 WKYP 410 (475)
Q Consensus 407 wd~~ 410 (475)
|++.
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9975
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.8e-10 Score=114.44 Aligned_cols=217 Identities=17% Similarity=0.151 Sum_probs=139.3
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC-CC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR-DR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|...... +.+..+...+....| +|+.|+..+. ++ .|.+||+... .. ..+....+......|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 567777654433 445556677888888 4677766543 33 5888888743 22 223323334457899999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. .+.++ .|+++|+.+++. ..+..+.......+|+||++.++.+........|+++|+.+++.............
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence 875 45555 488889887764 44455556677899999999888876412235688888888875543333333456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC-CC--EEEEecCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-ET--LRFWNVFPSL 455 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~--I~iW~~~~~~ 455 (475)
..|+|+|+.|+.+. ..++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ +. |++++.....
T Consensus 355 ~~~SpDG~~l~~~~-~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 355 GSITPDGRSMIMVN-RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred eeECCCCCEEEEEE-ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 79999999998853 3344 5666788777543 33322 122345899999988776543 33 6777775443
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=4.9e-12 Score=126.71 Aligned_cols=282 Identities=19% Similarity=0.296 Sum_probs=196.6
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCC---C
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNS-KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQ---C 241 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~---~ 241 (475)
.++++..+|- .++.++ .-.+++.|+... .....+..-..-.|-.+.|++. -.+-++......-.+|++.. .
T Consensus 26 ~~~a~si~p~grdi~lAs-r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLAS-RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred cccceeeccccchhhhhh-hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 3444555542 333333 334556666543 2223322122345778899884 35677777777788999753 2
Q ss_pred eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.....+.+|...|+.+.|+ +..+++++.|-.+..||++.....+.....-......++|+.....+.+.+..+.|.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3344566999999999996 5799999999999999999888887777766677888999984444444455678999
Q ss_pred EECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
||++.+ .++..+++|...|..++|...-...+.+.+ .|++|++||.... +....+.+..+|..-.+-|-|.-.++
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999865 577888889999999999876555566654 8999999998653 34455567778888888886655444
Q ss_pred EEecCCCeEEEEECC----------CCceEEEecCCCcceEEEEECCCCC----------EEEEEeCCCCEEEEecCCC
Q 011916 396 THGYSQNQIMVWKYP----------SMAKVSTLTGHSLRVLYLATSPDGQ----------TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~----------~~~~~~~l~~h~~~V~~l~~spdg~----------~l~s~s~Dg~I~iW~~~~~ 454 (475)
.-.-.++.+.+++.+ ..+.+..+.||++.|....|-..++ .|+|-+.|.++++|-+...
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 212223344444432 2467899999999998877754322 7999999999999998753
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1e-10 Score=115.19 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=152.6
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEc--------------------CCCCEEEEEeCCCeEEEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWT--------------------REGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~s--------------------pdg~~la~g~~dg~v~iwd 237 (475)
.++....||.+++|+...++...-+.- ...+..++..|. .|-..++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 345556699999999999887665532 123444555553 1334788899999999999
Q ss_pred CCCCeeeEEec--CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 238 GTQCKRVRTFG--GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~--~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
+..++....+. .|.+.|.++.|+. ..|.+++.|+.+..|+.. ....++........+.+++.+|||..|++++
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 99999988876 7999999999954 789999999999999998 6777888888888999999999999999988
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCC-----CCcEEEEecCCCCCeEEEEECCC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH-----QSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+.|++||+++.+.+..|.+|.++|.+++|.-. |.+++++.. .+.-|.+|-+..
T Consensus 164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 58999999999999999999999999999877 788888865 677788887654
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4e-09 Score=98.79 Aligned_cols=265 Identities=9% Similarity=0.122 Sum_probs=181.8
Q ss_pred CCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CeeeEE--ecCCCCceEEE
Q 011916 187 GTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQ--CKRVRT--FGGHQTRAGVL 257 (475)
Q Consensus 187 ~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~--~~~~~~--~~~h~~~v~~l 257 (475)
+..|++|++.+ +++.........+.++-++|+|++++|.++..+ |.|..|.++. |++... .......-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 67899999873 333333333567888999999999999988665 6677777664 444321 11112222555
Q ss_pred Ee--CCCEEEEEe-CCCcEEEEECCCCCccE--EEecCccCC----------EEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 011916 258 AW--NSRILSSGS-RDRNILQHDLRVSSDYI--CKLAGHKSE----------VCGLKWSHDDRELASGGN-DNQLLVWNQ 321 (475)
Q Consensus 258 ~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~--~~~~~h~~~----------V~~l~~s~~~~~lasg~~-Dg~I~iwd~ 321 (475)
+. ++++++++. ..|.|.++-++..+... .....|.+. +....+.|++++|++..- -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 55 577888776 45789999987554332 223335444 888999999999998753 237999999
Q ss_pred CCCceeE----EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ce---eeee-------cCCCCeeEEEE
Q 011916 322 HSQQPTL----RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQ---LNSV-------DTGSQVCNLAW 386 (475)
Q Consensus 322 ~~~~~~~----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~---~~~~-------~~~~~v~~l~~ 386 (475)
..+.... .+ ...+.-+.|+|+|+++..++..- -+++|.+|..... .. ++.+ ........|.+
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 9775432 22 23456789999999998888765 8999999998773 22 2222 23456788999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCC-ceEEEe---cCCCcceEEEEECCCCCEEEEEeCC-CCEEEEecCCCC
Q 011916 387 SKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTL---TGHSLRVLYLATSPDGQTIVTGAGD-ETLRFWNVFPSL 455 (475)
Q Consensus 387 s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW~~~~~~ 455 (475)
+++|++|+++. -....|.+|.+... ..+..+ ..+........|+++|++|+++..| ..|.+|.++...
T Consensus 252 s~dGrFLYasN-Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 252 SPDGRFLYASN-RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCCEEEEec-CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999999853 34457888887543 222222 2344447889999999999998875 469999987654
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=8.1e-11 Score=115.20 Aligned_cols=184 Identities=18% Similarity=0.345 Sum_probs=145.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEe------cCccC
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKL------AGHKS 293 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~h~~ 293 (475)
.++++|+ ...|+-++++.|+.+..+....+.++++..+. .+|++|+.+|.|..||.+... .+..+ ..|.+
T Consensus 147 Dly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 147 DLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPG 224 (703)
T ss_pred cEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh-hheeeecccccCCCcc
Confidence 3344444 45788889999999999988889999999974 788889999999999998433 33222 23333
Q ss_pred -----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECCCC-CcEEEEecCCCCCeEEEEEC
Q 011916 294 -----EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 294 -----~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +...+|..+.|.+.+ ...+++. ....++|||-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~ 301 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDE 301 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec---chHHhhhccc
Confidence 49999999999999999999999999999998876543 234578999997652 2234443 5788999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.+|+....++....+..+++-|++..+++ +..+..+..|=++..
T Consensus 302 ~~Gk~~asiEpt~~lND~C~~p~sGm~f~--Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 302 CTGKPMASIEPTSDLNDFCFVPGSGMFFT--ANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCceeeccccCCcCceeeecCCceEEE--ecCCCcceeEEcccc
Confidence 99999999998888999999999999999 777787877777654
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=5.2e-11 Score=123.99 Aligned_cols=264 Identities=18% Similarity=0.227 Sum_probs=181.3
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSV--QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v--~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
..|.++.+..|.+||+..+..+..+..-+.-.+... ...-.+.+++++..-+.+..=+.. .+....+..+... ..+
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~~~~s~wi~g-~~l 95 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQIIERFSDWIFG-AKL 95 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchh-hhhhhhccccccc-cch
Confidence 456777888999999999876554432111111100 000123345555443433332211 1111222222212 445
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-----EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
.|....++.++.+..+.+||... ........ +.. ...-+.++++.-++++|+.-+.|.+|+....+.-..+.+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~-~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKN-SSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcceEEEEEcCceEEEEeccc-CceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 56778899999999999999973 33322222 221 122334456667899999999999999985444446889
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|.+.|.++.|+-+|++++.+. .|+.+++|++.+.+... .+.|...+..++|.|+ ++++ ++.|-+.++|+..
T Consensus 174 HeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~gedctcrvW~~~ 246 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VGEDCTCRVWGVN 246 (967)
T ss_pred cCCceEEEEEccCCcEEEEEe---cCcceeeeecccccccCcccccccceeEEEEeccc--eeEE--eccceEEEEEecc
Confidence 999999999999999666654 89999999999988776 4568889999999999 7777 7799999999654
Q ss_pred CCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 411 SMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 411 ~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.+..+.+|... |..++..++...++|++.|+.+++|++....
T Consensus 247 -~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 247 -GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 4555577788654 8999999999999999999999999987544
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.8e-10 Score=115.30 Aligned_cols=282 Identities=16% Similarity=0.280 Sum_probs=200.0
Q ss_pred CCCCCCceeEEecCCC-CEEEE-EcCCeEEEEECCCCcE---------------EEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKV---------------TRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~---------------~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
.++....++|+.|+.+ +++|+ |.+|.+++..+.+... .+.++ +|.+.|.-+.|+.+.+.|-+
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccc
Confidence 3456677899999975 55554 5699999998765321 12222 89999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEec--CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH 302 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 302 (475)
...+|.|.||-+-.+.-...+. ...+.|.+++| +|..++..-.||.|.+-.+....-.-+.+++ .....+.|++
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 9999999999988876655554 34567899999 4899999999999988887632222222222 2245788999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-------eeE----EEeccccceeEEEEC--------CCCCcEEEEecCCCCCeEEE
Q 011916 303 DDRELASGGNDNQLLVWNQHSQQ-------PTL----RLTEHTAAVKAIAWS--------PHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 303 ~~~~lasg~~Dg~I~iwd~~~~~-------~~~----~~~~h~~~v~~l~~s--------p~~~~ll~sg~Gs~d~~I~i 363 (475)
|.+.++.+-..|.+.+||....- +.. .+......|-.+.|. |+...++++- ..|.+.|
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 99999888888999999976421 111 112223346666664 4666555543 6888888
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC--------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS--------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~--------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
-.-.+......++++-.+..+.|+++|..|+++ |.. .+.|++|. +-|+.+.+++.....|++++|-..|-
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc-G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC-GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEc-cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCce
Confidence 766666666667778889999999999999985 332 13555554 56788888888888899999977776
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++.+ .|+.|++=++.+.
T Consensus 322 riA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred EEEEE-ecceEEEEeeccc
Confidence 66544 4666666555543
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=3e-09 Score=103.16 Aligned_cols=231 Identities=12% Similarity=0.098 Sum_probs=157.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCC------CcEEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSYISVGT-N-LGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~------~~V~~v~~spdg~~la~g~-~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
.+..|.+||..+.+.+..+.++.. .....++++|||++|++.. . +..|.+.|+.+++.+.++.-.. ...-+
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 468999999999999988876422 2334788999999999877 3 6899999999999999887422 22333
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEEe-c-Ccc--CCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCc-----e
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICKL-A-GHK--SEVCG-LKWSH-DDRELASGGNDNQLLVWNQHSQQ-----P 326 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~-~h~--~~V~~-l~~s~-~~~~lasg~~Dg~I~iwd~~~~~-----~ 326 (475)
........+-+.||......+...++....- . .+. ..+.. -.|.+ +|+++.+... |.|++.|+.... .
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 3333333344556666555444333321110 0 011 00000 03455 8888877776 999999965432 2
Q ss_pred eEEEec-------cccceeEEEECCCCCcEEEEecC-------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCC-
Q 011916 327 TLRLTE-------HTAAVKAIAWSPHQSSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN- 391 (475)
Q Consensus 327 ~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~G-------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~- 391 (475)
...+.. ..+.+.-++++++++.+++...+ ...+.|.++|+.+++.+..+..+..+..+++++|++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence 222211 23344559999999988884311 023689999999999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
.|+++ ...++.|.++|..+++.+.++.
T Consensus 313 ~lyvt-n~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 313 LLYAL-STGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEe-CCCCCcEEEEECcCCeEEeeec
Confidence 77765 4468889999999999998873
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.9e-10 Score=108.01 Aligned_cols=284 Identities=14% Similarity=0.250 Sum_probs=186.3
Q ss_pred ceeEEecCCC--CEEEEEc-----------CCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 170 YLNLVDWSSQ--NVLAVGL-----------GTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~-----------~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
++..++|||. .+++.+. +..+.|||+.+|...+.+.. +....-.-+.||.|++|+|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4666888886 3444432 25799999999998887764 22222335689999999998877 4799
Q ss_pred EEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeC-----CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 235 VWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSR-----DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
||+..+..++..-.-.-..|..+.|.+ ++||-=.. -..+.+..+. ....++...-|.-.=+.+.|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeeccceeeeccEEEeccCCcEE
Confidence 999877555433333445677788865 34433221 1234444554 334445555555556778888899988
Q ss_pred EEEe----------CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-C---ceee
Q 011916 308 ASGG----------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-G---HQLN 373 (475)
Q Consensus 308 asg~----------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~---~~~~ 373 (475)
+.-- .-..+.|+.++..........-...|...+|-|.|..+++..+.+...++.+|.+.+ . ..+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 7632 112355666665443223334567889999999999888777666778899998873 2 2333
Q ss_pred eecCCCCeeEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCE
Q 011916 374 SVDTGSQVCNLAWSKNVNELVSTH-GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETL 446 (475)
Q Consensus 374 ~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I 446 (475)
.++. ...+.+.|+|.|+.++++. ++..|.+.++|+........-.......+.+.|.|.|+|++|++. |.-.
T Consensus 489 ~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GY 567 (698)
T KOG2314|consen 489 ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGY 567 (698)
T ss_pred hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccce
Confidence 3433 5577899999999988752 335789999998742222221112234577899999999999865 5567
Q ss_pred EEEecCCCCC
Q 011916 447 RFWNVFPSLK 456 (475)
Q Consensus 447 ~iW~~~~~~~ 456 (475)
+||++.....
T Consensus 568 ri~tfqGrll 577 (698)
T KOG2314|consen 568 RIFTFQGRLL 577 (698)
T ss_pred EEEEeecHHH
Confidence 8888876543
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=1.6e-08 Score=99.78 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=162.9
Q ss_pred EecCCC--CEEEEEc----CCeEEEEECCC--CcEEEEeeCC-CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ce
Q 011916 174 VDWSSQ--NVLAVGL----GTCVYLWTASN--SKVTRLCDLG-PGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQ-CK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~----~~~V~lw~~~~--~~~~~~~~~~-~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~-~~ 242 (475)
++++++ .+.++.. .+.|..|.+.. +++..+-... .......++++|++++|+++.. +|.|.++++.. +.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 556654 3555544 45888888766 4554444332 4566788999999999999875 89999999976 43
Q ss_pred eeEE---ec----------CCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEEE----ecCccCCEEEEEEcC
Q 011916 243 RVRT---FG----------GHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYICK----LAGHKSEVCGLKWSH 302 (475)
Q Consensus 243 ~~~~---~~----------~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~----~~~h~~~V~~l~~s~ 302 (475)
.... +. .......++.++ ++++++.. ....|.+|++......+.. .......-..+.|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3322 21 122456677774 56666654 3457999999754422211 223445688999999
Q ss_pred CCCEEEEEe-CCCcEEEEECC--CCce--eEEEecc------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CC
Q 011916 303 DDRELASGG-NDNQLLVWNQH--SQQP--TLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NG 369 (475)
Q Consensus 303 ~~~~lasg~-~Dg~I~iwd~~--~~~~--~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~ 369 (475)
+++++.+.. .++.|.++++. .+.. +..+... ......|+++|+|++|+++.. ..+.|.+|++. ++
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATG 279 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTT
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCC
Confidence 999887665 46789999988 4422 2222211 125788999999999999876 68999999983 34
Q ss_pred c--eeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEec-CCCcceEEEEE
Q 011916 370 H--QLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKVSTLT-GHSLRVLYLAT 430 (475)
Q Consensus 370 ~--~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~ 430 (475)
+ .+..+.. +.....+.++|+|++|+++ +..++.|.+|++ .++.....-. ..-....||.|
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 3334444 4558999999999999986 557788999976 4555433322 12334556655
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=9.4e-11 Score=115.45 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=160.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEEecC---CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCKRVRTFGG---HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV 295 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 295 (475)
|.+.|+|....||.++||+..+++....|.. -.+..++..|. |.. ...+.+...- ..+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~--------------~~s~~k~~~~--~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSA--------------DYSPMKWLSL--EKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEe--------------ccchHHHHhH--HHH
Confidence 4567999999999999999999988877752 23344455554 111 1111111000 001
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
. .-+.|...++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|..++ .|..+..|+...+..+.
T Consensus 64 ~--~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~---ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 64 K--KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG---ADLKVVYILEKEKVIIR 138 (541)
T ss_pred h--hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC---CceeEEEEecccceeee
Confidence 1 113355578888999999999999998887776 4999999999998877566554 79999999999999888
Q ss_pred eecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC-----CCEEEE-EeCCCCE
Q 011916 374 SVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD-----GQTIVT-GAGDETL 446 (475)
Q Consensus 374 ~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~~l~s-~s~Dg~I 446 (475)
.... ...+.+++.+|||+.+++ + .++|.+||+++.+.+..++||.++|.+++|-.+ |.++.+ +..+..+
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~--a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLT--A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEe--c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 8864 456899999999999988 3 578999999999999999999999999999876 666665 4556678
Q ss_pred EEEecCCCCCCCC
Q 011916 447 RFWNVFPSLKAPA 459 (475)
Q Consensus 447 ~iW~~~~~~~~~~ 459 (475)
.+|-+....+.+.
T Consensus 215 ~~w~v~~~~kkks 227 (541)
T KOG4547|consen 215 TVWVVEKEDKKKS 227 (541)
T ss_pred eEEEEEcccccch
Confidence 9999987655544
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.3e-10 Score=114.46 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=198.2
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC------------CEEEEEeCCCeEEEEEC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG------------SYISVGTNLGQVQVWDG 238 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg------------~~la~g~~dg~v~iwd~ 238 (475)
.++++|++..++|.|..+.|.+-|..+-+.++.++ .|...|+.|.|.|.. -.||++.-.|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 57799999999999999999999999999888887 577999999998731 25677777899999999
Q ss_pred CCCeeeEEecCCCCceEEEEe-----CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEe
Q 011916 239 TQCKRVRTFGGHQTRAGVLAW-----NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~ 311 (475)
..+..+..+..|...+..++| +. +.|++-.....|.+|+..+ +...-+.........|+.+.| |.+.+..-+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999999999999999999999 22 6788888889999999884 444444444445567789988 777777777
Q ss_pred CCCcEEEEECCC-------CceeEEEecccc-------------------------ceeEEEECCCCCcEEEEecCCCCC
Q 011916 312 NDNQLLVWNQHS-------QQPTLRLTEHTA-------------------------AVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 312 ~Dg~I~iwd~~~-------~~~~~~~~~h~~-------------------------~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..|.|.+.+.-. ++..+.-..|.. ....++|+|.-++++... ..+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---~pr 252 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---FPR 252 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---ecc
Confidence 778888877532 222332222222 012356788877666654 689
Q ss_pred eEEEEECCCCceeeeecCC-CCeeEEEEcCCCC--eEEEEEecCCCeEEEEECCC----------------CceEEEecC
Q 011916 360 CIRFWNTSNGHQLNSVDTG-SQVCNLAWSKNVN--ELVSTHGYSQNQIMVWKYPS----------------MAKVSTLTG 420 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~--~l~~~~g~~dg~I~iwd~~~----------------~~~~~~l~~ 420 (475)
.+.++|++-..++..+... +.+.-+.|-|+++ .|++ ...+|.+.+|-.+. ++++..+..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 9999999988888887533 4455566666665 4555 77899999997543 111111111
Q ss_pred -CCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCCCC
Q 011916 421 -HSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 421 -h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+.++...+..|. ...++.--.+|.+.+|.+..+...
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1222333344454 344444556788899999865543
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=4.7e-09 Score=114.84 Aligned_cols=276 Identities=14% Similarity=0.212 Sum_probs=177.3
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEE----ECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLW----TASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT---- 239 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw----~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~---- 239 (475)
.+..+++-++ .++++..+|.|.+. +..+..+...-. -+..|.+++||||+..|+..+.+|+|.+-.-.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 4555777665 57777789999999 666655444332 35789999999999999999999998875411
Q ss_pred -----------C--------CeeeEEecC------------------------CCCceEEEEe--CCCEEEEEeC-----
Q 011916 240 -----------Q--------CKRVRTFGG------------------------HQTRAGVLAW--NSRILSSGSR----- 269 (475)
Q Consensus 240 -----------~--------~~~~~~~~~------------------------h~~~v~~l~~--~~~~l~sgs~----- 269 (475)
. |+...+|.| +...-..++| ||.++++.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 0 122222221 2224456889 6788888764
Q ss_pred -CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCC---ceeEEEeccccceeEEEE
Q 011916 270 -DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 270 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~ 342 (475)
-+.++||+-+ +........-.+--.+++|-|.|+++|+.-. ...|.+|.-+.. +....+......|..++|
T Consensus 235 ~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 235 SRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred ceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEE
Confidence 2578999875 3433333333344457899999999998764 345667764322 212222235678999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCce--eeeec--CCCCeeEEEEcCCCCe-EEEEEecCCCeEEEEECC----CC-
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVD--TGSQVCNLAWSKNVNE-LVSTHGYSQNQIMVWKYP----SM- 412 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~--~~~~v~~l~~s~~~~~-l~~~~g~~dg~I~iwd~~----~~- 412 (475)
++++..|++.. ...|.+|-..+..- .+.+. ....+..+.|+|.... |.+ ...+|.+..+++. .+
T Consensus 313 n~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v--~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV--LTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE--EecCCcEEEEEEEEEEEecC
Confidence 99999655543 34499999887642 22232 3344566999996544 444 3344665554431 10
Q ss_pred -------ceEEEec-----------------------CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 413 -------AKVSTLT-----------------------GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 413 -------~~~~~l~-----------------------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+..+. .-...|.+++|++++..+++-..||.|.+|......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 124679999999999889999999999999976544
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=4.9e-09 Score=105.05 Aligned_cols=264 Identities=15% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVC-SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~-~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
.+.+++++.++.|+.+|..+|+..-...++. .+. .+. .++..+++++.+|.|..+|..+++.+............
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 4567777778999999999998765544322 221 222 25678889999999999999999988776533322222
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 011916 257 LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT 331 (475)
Q Consensus 257 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~ 331 (475)
....+..++.++.++.|..+|.+ .++.+-........+ .+... .+..++.+..++.+..+|.++++.+....
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcC-CCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 23356678888899999999998 444444333222111 11111 23477788888999999999998766543
Q ss_pred cccc----c------e-eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 332 EHTA----A------V-KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 332 ~h~~----~------v-~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
.... . + ....+ .+..++++. .++.++.||..+|+.+........ .... ..+..+++ +..
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv--~~~ 287 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV--DGGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV--TDA 287 (377)
T ss_pred cccCCCCCchhhhhccCCccEE--ECCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE--ECC
Confidence 1100 0 0 11111 234455543 689999999999998877653321 1222 24567777 668
Q ss_pred CCeEEEEECCCCceEEEecCCCc-ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSL-RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|.|+.+|..+++.+........ ....... .+..|++++.||.|+++|..+++.....
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999999987765532211 1222222 4668899999999999999888766543
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=1.8e-10 Score=120.04 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=148.2
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-----VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-----V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.|-..+++.+..++.+.+||...+.+..... +.+. ..-+.++++.-++++|+--|.|.+|+....+.-..+.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 45555678888899999999998887655543 2222 1223346677799999999999999987444444688
Q ss_pred CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|.+.+..+.| +|+++++.+.|.++++|++...........+|...|..+.|.|+ .+++++.|-+.++|+.... .
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~ 249 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-Q 249 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-e
Confidence 99999999999 79999999999999999999655555577889999999999988 9999999999999976543 4
Q ss_pred eEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 327 TLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 327 ~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+..+.+|. ..+..++..+... ++.+++ .|+.+++|++..
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 44777775 4588888888776 666665 899999999754
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=5.8e-09 Score=104.49 Aligned_cols=255 Identities=14% Similarity=0.082 Sum_probs=163.5
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCce---
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRA--- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v--- 254 (475)
.+.+++++.++.|+.+|..+|+..-.... .+.+.+.-.. .+..+++++.+|.|..||.++++.+..+......+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45677777799999999999987655443 2333221111 35578888889999999999999887765433221
Q ss_pred --EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecC-cc---CCE---EEEEEcC--CCCEEEEEeCCCcEEEEECCC
Q 011916 255 --GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAG-HK---SEV---CGLKWSH--DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 255 --~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~---~~V---~~l~~s~--~~~~lasg~~Dg~I~iwd~~~ 323 (475)
......+..++.+..++.+..+|.+. ++.+-.... .. ..+ ..+.-+| .+..+++++.+|.++.||..+
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQT-GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccC-CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11122345778888899999999874 333322110 00 000 0010011 355788888899999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCC-CeeEEEEcCCCCeEEEEEecCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGS-QVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~-~v~~l~~s~~~~~l~~~~g~~d 401 (475)
++.+...... ....... .+..+++.. .++.+..+|..+|+.+.... ... ....... .+..+++ +..+
T Consensus 261 G~~~W~~~~~--~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~--~~~~ 329 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV--GDFE 329 (377)
T ss_pred CcEEEeeccC--CccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE--EeCC
Confidence 9877765421 1122222 344455532 69999999999999887652 222 2222222 3567777 7789
Q ss_pred CeEEEEECCCCceEEEecCCCcceE-EEEECCCCCEEEEEeCCCCEEEE
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVL-YLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
|.|+++|..+++.+..++.+...+. ..++. + ..|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 9999999999999988886664432 22332 3 358888999998876
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=1.2e-08 Score=99.12 Aligned_cols=262 Identities=13% Similarity=0.184 Sum_probs=178.7
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCC-cEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCC--
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGD-SVC-SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNS-- 261 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~-~V~-~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~-- 261 (475)
.+.+.+||..++.++..+...... ... -+.|+.+.+|+|--.. ..++|+++...-....+.. ....+...+|.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 346999999999988877642221 233 6789999888876543 4799999722111111111 124566666643
Q ss_pred --CEEEE-----EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCC
Q 011916 262 --RILSS-----GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-----------NDNQLLVWNQHS 323 (475)
Q Consensus 262 --~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-----------~Dg~I~iwd~~~ 323 (475)
..|+. ++..+++++|.+. ....+....-....=+.+.|.+.|++|++-- ....++|+++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 23332 3567889999997 4444444333444557899999999776521 125688888874
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec--CC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY--SQ 401 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~--~d 401 (475)
... .......++|...+|.|+++.+.++. |..+-.+.++|++.. +...-....-..+.|+|.+++++++ |. ..
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a-gF~nl~ 339 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA-GFDNLQ 339 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEEe-cCCccc
Confidence 432 23225689999999999999877766 568999999999876 4444455556778899999999885 43 45
Q ss_pred CeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCCCCC
Q 011916 402 NQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPSLKA 457 (475)
Q Consensus 402 g~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~~~~ 457 (475)
|.|.+||....-.+. .+.+.. ...+.|+|||+++.+... |..|.||++......
T Consensus 340 gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 789999987765554 555433 345789999999887643 778999999876544
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=6.7e-10 Score=100.74 Aligned_cols=224 Identities=17% Similarity=0.204 Sum_probs=152.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEee-CC-CC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEecCCCCc
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCD-LG-PG---DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFGGHQTR 253 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~-~~-~~---~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~~~ 253 (475)
++-+-..|+|.++..........+. +. .. ....++.|++.+..++++-.+|.+.+-+....... +.++.|.-.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 4444557888888765543322222 11 11 12457889999999999999999997665555444 478899999
Q ss_pred eEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcee
Q 011916 254 AGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQQPT 327 (475)
Q Consensus 254 v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~~~~ 327 (475)
++...| +++++.+|+.|+.+..||+|.++..+.. .+-|...|++|.-+| .+.++++|+.|-.|++||.+ .++++
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 999988 4789999999999999999966665554 667999999999887 67899999999999999999 45666
Q ss_pred EEEeccccceeEEEECCCCCc-EEEEecCCCCCeEEEEECCCCcee-----eee-cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 328 LRLTEHTAAVKAIAWSPHQSS-LLASGGGTADRCIRFWNTSNGHQL-----NSV-DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~-ll~sg~Gs~d~~I~iwd~~~~~~~-----~~~-~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
..-. -.+.|..+.++|.-.. +++++ .-+-.+|.+...+... ... .+.+-+..-.|......++++ .+-
T Consensus 248 ~~~~-v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-sFY 322 (339)
T KOG0280|consen 248 FKAK-VGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-SFY 322 (339)
T ss_pred ccCc-cccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeeccccccccceeeee-ecc
Confidence 5433 4588999999996543 33332 4455667766554322 111 234445555664443445543 444
Q ss_pred CCeEE-EEEC
Q 011916 401 QNQIM-VWKY 409 (475)
Q Consensus 401 dg~I~-iwd~ 409 (475)
|+.|+ +|-.
T Consensus 323 Dk~~~~~Wl~ 332 (339)
T KOG0280|consen 323 DKKIRQLWLH 332 (339)
T ss_pred ccceeeeeee
Confidence 55533 6643
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=6.1e-11 Score=128.94 Aligned_cols=184 Identities=13% Similarity=0.233 Sum_probs=153.0
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
..++++.||.|++|....++.+..+.......|+.+.|+.+|+.+.++..||.+.+|.+. .+.....+.|......+.|
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~F 2300 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRF 2300 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceee
Confidence 578889999999999999988887776555899999999999999999999999999977 6677777889999999999
Q ss_pred CCCEEEEEe---CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc
Q 011916 260 NSRILSSGS---RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 260 ~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
-+..+++++ .++.+.+||.-.....-..-..|.+.++++++-|..+.|++||.+|.|++||++..+.++.+..
T Consensus 2301 i~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---- 2376 (2439)
T KOG1064|consen 2301 IGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---- 2376 (2439)
T ss_pred eehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----
Confidence 778888775 5789999998655544333488999999999999999999999999999999998877766553
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
+. . +..+++|+ ..|.|+||++.....++.+..
T Consensus 2377 -----~~-~-~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 -----LD-T-REYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -----hh-h-hheeeccC--cccceEEEEccccchhhcCch
Confidence 33 3 33566654 999999999988877776643
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.3e-10 Score=113.45 Aligned_cols=230 Identities=15% Similarity=0.246 Sum_probs=165.1
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------------eeEEecCCCCceEEEEeCC--CEEEEEe
Q 011916 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---------------RVRTFGGHQTRAGVLAWNS--RILSSGS 268 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~--~~l~sgs 268 (475)
+.......|++|+....++|+|+.||.++|..+.+.. .-+++.||...|..+.||. ..|.+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3556778899999999999999999999999876421 1245779999999999974 7889999
Q ss_pred CCCcEEEEECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEeccccceeEEEECCCC
Q 011916 269 RDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 269 ~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~ 346 (475)
.+|.|.+|-+-...-+.. .-...++-|.+++|+.||..++....||.|.+=.+...+.- ..+++ .....+.|++|.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 999999998863322111 12234567999999999999999999999988766543311 11111 123478999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCC-------ceeeee-----cCCCCeeEEEEc--------CCCCeEEEEEecCCCeEEE
Q 011916 347 SSLLASGGGTADRCIRFWNTSNG-------HQLNSV-----DTGSQVCNLAWS--------KNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~-------~~~~~~-----~~~~~v~~l~~s--------~~~~~l~~~~g~~dg~I~i 406 (475)
+.+++ +-..|.+++||.... .+.... ..+..+..+.|. |+...+++ ++.+|.+.|
T Consensus 169 ~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~Qi 243 (1189)
T KOG2041|consen 169 EQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQI 243 (1189)
T ss_pred HHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceehh
Confidence 97777 347899999997643 121111 123346667775 46777888 889999998
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
..-.+......+. -.-.|.+..|+++|..|+.++.|
T Consensus 244 MR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 8765543333332 22678899999999999998765
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=9.4e-09 Score=100.65 Aligned_cols=281 Identities=14% Similarity=0.183 Sum_probs=190.0
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-----------CCeEEE
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-----------LGQVQV 235 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-----------dg~v~i 235 (475)
..--+-+.|||. ..|+.-.-..|.+|--.+-...+.+ .|. .|.-+.|||..+||++=+. ...+.|
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 344556899997 4555556778999976665544444 443 5888999999999998543 246999
Q ss_pred EECCCCeeeEEecCCCC--ceE-EEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE
Q 011916 236 WDGTQCKRVRTFGGHQT--RAG-VLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~--~v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg 310 (475)
||+.+|...+.+..... .+. -+.| ++.++|--.. ..|.||+... -.++..-.-.-..|....|+|.++.||.-
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEE
Confidence 99999999988875222 222 2345 5677776655 6788988762 22222222233568889999999998875
Q ss_pred eCC-----CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-------CCCeEEEEECCCCc-eeeeecC
Q 011916 311 GND-----NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT-------ADRCIRFWNTSNGH-QLNSVDT 377 (475)
Q Consensus 311 ~~D-----g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs-------~d~~I~iwd~~~~~-~~~~~~~ 377 (475)
... ..+.+-.+.+++.+.+..-|.-.=..+.|-..|.+|.+-.... .-..+.|+.++... ++..++.
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 432 2466777777776666555555556788888888776532100 11235566655433 4556677
Q ss_pred CCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCC-C---ceEEEecCCCcceEEEEECCCCCEEEEEe---CCCCEEEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPS-M---AKVSTLTGHSLRVLYLATSPDGQTIVTGA---GDETLRFW 449 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~-~---~~~~~l~~h~~~V~~l~~spdg~~l~s~s---~Dg~I~iW 449 (475)
...|..++|-|.|+.+++.+|.. ..++.+|.+.+ . +.+..+. ....+.+.|+|.|++++.++ ..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 88899999999999999987754 35788898873 2 2233332 24467899999999998764 47899999
Q ss_pred ecCCCC
Q 011916 450 NVFPSL 455 (475)
Q Consensus 450 ~~~~~~ 455 (475)
|+....
T Consensus 523 D~~~a~ 528 (698)
T KOG2314|consen 523 DTDYAD 528 (698)
T ss_pred ecchhh
Confidence 998533
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=4.5e-08 Score=109.17 Aligned_cols=236 Identities=13% Similarity=0.140 Sum_probs=158.1
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecC--CC------------CceEEEEeC--CCEEEEE-eCCCcEE
Q 011916 213 CSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGG--HQ------------TRAGVLAWN--SRILSSG-SRDRNIL 274 (475)
Q Consensus 213 ~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~--h~------------~~v~~l~~~--~~~l~sg-s~dg~I~ 274 (475)
..++++++ +.++++-+.++.|++||... +.+..+.+ .. .....++++ ++.|+++ ..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788874 56666767788999999764 44444332 11 124567774 4555554 4557788
Q ss_pred EEECCCCCccEEEecCc-----------------cCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecc---
Q 011916 275 QHDLRVSSDYICKLAGH-----------------KSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEH--- 333 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h-----------------~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--- 333 (475)
++|... ..+..+.+. -..-.++++++ ++.++++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 898863 223333210 11235799999 5666677777889999998876432 22110
Q ss_pred ------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------C--------CC
Q 011916 334 ------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------------T--------GS 379 (475)
Q Consensus 334 ------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------------~--------~~ 379 (475)
-.....|+++|++..|+++.. .++.|++||+.++....... . -.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 123467999999998888765 78999999998765321110 0 01
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------------CCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------------GHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
....++++++|+.+++ ...++.|++||..++....... +.-.....|+++++|+.+++-+.++.|
T Consensus 805 ~P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 2468899999987666 6788999999998765543221 112357889999999999988899999
Q ss_pred EEEecCCCCC
Q 011916 447 RFWNVFPSLK 456 (475)
Q Consensus 447 ~iW~~~~~~~ 456 (475)
++||+.++..
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999987654
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=7.4e-09 Score=95.89 Aligned_cols=272 Identities=15% Similarity=0.264 Sum_probs=174.4
Q ss_pred ceeEEecCCC-CEEEEE-cCCeEEEEECCCCc-----EEEEee-----------CCCCCcEEEEEEcCCC--CEEEEEeC
Q 011916 170 YLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK-----VTRLCD-----------LGPGDSVCSVQWTREG--SYISVGTN 229 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~-----~~~~~~-----------~~~~~~V~~v~~spdg--~~la~g~~ 229 (475)
-+.++.|... ..||+| .+|.|.++.-+... ....++ +.-...|..+.|.+++ ..++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 3566777643 455555 58899998654322 111111 1123578899999865 47788889
Q ss_pred CCeEEEEECCCCee-----------------------------------eEEe-cCCCCceEEEEeCC-CEEEEEeCCCc
Q 011916 230 LGQVQVWDGTQCKR-----------------------------------VRTF-GGHQTRAGVLAWNS-RILSSGSRDRN 272 (475)
Q Consensus 230 dg~v~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~~-~~l~sgs~dg~ 272 (475)
|.+|++|.+..... .+.+ ..|.--|.++++|. ...+....|=.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence 99999998643110 0111 25677788888853 33344456788
Q ss_pred EEEEECCCCCccEE--EecCcc-----CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce------eE----------
Q 011916 273 ILQHDLRVSSDYIC--KLAGHK-----SEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQP------TL---------- 328 (475)
Q Consensus 273 I~iwd~~~~~~~~~--~~~~h~-----~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~------~~---------- 328 (475)
|.+|++....+... -++.+. .-|++..|+| ..+.++..+..|+|++.|++.... +.
T Consensus 187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs 266 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS 266 (433)
T ss_pred eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence 99999876554332 233332 4588899999 456888888899999999984321 11
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECC-CCceeeeecCC-------------C---CeeEEEEcCCC
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTS-NGHQLNSVDTG-------------S---QVCNLAWSKNV 390 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~-~~~~~~~~~~~-------------~---~v~~l~~s~~~ 390 (475)
-|.+--..|..+.|++.|+++++ .| -+|++||+. ..+++..+... . .-..++|+-++
T Consensus 267 ffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 267 FFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred hHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11222356889999999998887 45 889999994 45555544311 1 23557899888
Q ss_pred CeEEEEEecCCCeEEEEECCCCceE-EEec--------------------C-------------CCcceEEEEECCCCCE
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKV-STLT--------------------G-------------HSLRVLYLATSPDGQT 436 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~-~~l~--------------------~-------------h~~~V~~l~~spdg~~ 436 (475)
.++++ |+-.+.+++|+...+... .++. + ....++..+|+|....
T Consensus 342 ~~v~T--Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 342 SYVMT--GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred ceEec--ccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 89888 888999999995433210 0000 1 0123566789999888
Q ss_pred EEEEeCCCCEEEE
Q 011916 437 IVTGAGDETLRFW 449 (475)
Q Consensus 437 l~s~s~Dg~I~iW 449 (475)
+|.++.. .++||
T Consensus 420 ia~aatn-nlyif 431 (433)
T KOG1354|consen 420 IAVAATN-NLYIF 431 (433)
T ss_pred eeeeecC-ceEEe
Confidence 8887665 45554
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=2.9e-10 Score=123.90 Aligned_cols=197 Identities=15% Similarity=0.260 Sum_probs=154.3
Q ss_pred CCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 251 QTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 251 ~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
-..|.++.-++ .+.++|+.||.|++|........+.--......|+.+.|+.+|+.+..+..||.+.+|... .++..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 34455555443 5789999999999999875554444444445889999999999999999999999999987 56677
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
..+.|.....++.|-. ..++..|..+.++.+.+||..-. .-+....|.+.++++++.|..+.|++ |+.+|.|++
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis--ggr~G~v~l 2362 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS--GGRKGEVCL 2362 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe--cCCcCcEEE
Confidence 7788999999998876 43555555556789999997533 22222568889999999999999999 999999999
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
||++..+....++. +. ...++++|+..|.|+||++...........
T Consensus 2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99998877766653 44 567899999999999999988766665443
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=8.6e-08 Score=96.69 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=135.3
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSY-ISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~-la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~ 261 (475)
..|++-|.+......+.. + +.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......| +|
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 477787776665443432 2 37788999999985 6654443 468899998886655443 4444555667 56
Q ss_pred CEEE-EEeCC--CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEecccc
Q 011916 262 RILS-SGSRD--RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 262 ~~l~-sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+.|+ +.+.+ ..|.++|+.. + ....+..+........|+|||+.|+..+.. + .|++.|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~-g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNT-K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCC-C-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 5444 44444 4577777753 3 344454444434456899999988877643 2 688889987765333221 11
Q ss_pred ceeEEEECCCCCcEEEEecCCC-----C-CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTA-----D-RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWK 408 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~-----d-~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd 408 (475)
....|+|+|+.++.+..... . ..|.+.|+.++....... ........|+|||+.++.+..... ..|.+++
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 13589999999988864110 1 478999998886543333 334446899999999887643322 2466667
Q ss_pred CCC
Q 011916 409 YPS 411 (475)
Q Consensus 409 ~~~ 411 (475)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 644
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2e-10 Score=111.87 Aligned_cols=205 Identities=18% Similarity=0.301 Sum_probs=156.9
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc------cEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+..+.||+..|..++- |.+-+++++.|++|++|.++..+. +..++..|+..|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4467799999988876 568999999999999999985442 456788999999999999988888775 688
Q ss_pred EEEEECCCCceeEEEec--cccceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeeec------CCCCeeEEEE
Q 011916 316 LLVWNQHSQQPTLRLTE--HTAAVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSVD------TGSQVCNLAW 386 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~------~~~~v~~l~~ 386 (475)
|.+||.--++++.++.. ..+.+..+..-++ .+.++..| .+...+++++|.+.++-...+. ...-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999887777654432 2344445554444 34455554 3589999999999887665553 2355899999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE-EecCCC
Q 011916 387 SKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF-WNVFPS 454 (475)
Q Consensus 387 s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i-W~~~~~ 454 (475)
.+.|+.+++ +-++|.|.+.|.+++..+..+.........++ .|..+.|+....|.++.+ |.--.+
T Consensus 885 a~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 885 ADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred ccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 999999999 88999999999999998888776666666665 356677888888888888 765544
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=7e-08 Score=97.33 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=125.7
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE-LASGGND---NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-lasg~~D---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
..|.+-|.. +...+.+.... .+....|+|||+. ++..+.+ ..|+++|+.+++.... ....+......|+|||
T Consensus 169 ~~l~~~d~d--g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYT--LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCC--CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCC
Confidence 455565654 22233333333 7788999999984 6654433 4699999988865443 3355666778899999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEecCCCcce
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
+.++.+.....+..|.++|+.+++...............|+|||+.|+.++...+ ..|+++|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 9888776433456799999988875544334433456789999999888643222 2788889987765332221 11
Q ss_pred EEEEECCCCCEEEEEeCC---------CCEEEEecCCCCCCCCcc---cCCccccccCccc
Q 011916 426 LYLATSPDGQTIVTGAGD---------ETLRFWNVFPSLKAPALV---KDTSLWSLGRTHI 474 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~D---------g~I~iW~~~~~~~~~~~~---~~~~v~s~~~~~i 474 (475)
....|+|||+.|+..+.. ..|.+.++..+....... .....|+.+.+.|
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I 382 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSI 382 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEE
Confidence 124899999998876653 257777887765433221 1234566665543
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=1.1e-07 Score=91.67 Aligned_cols=173 Identities=11% Similarity=0.082 Sum_probs=128.2
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEecCCCC
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-QVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~ 252 (475)
.+-.+.++++.-+-|...|.+...+-.+++ ++...|.-..+.-+++-+++|..|| .+-|+|..+++..+ +...-+
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 444556777777788888888877766554 6677799999988989999999999 89999988776544 445567
Q ss_pred ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce
Q 011916 253 RAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN----QLLVWNQHSQQP 326 (475)
Q Consensus 253 ~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~I~iwd~~~~~~ 326 (475)
.|.++.. +|..++.+.....|.+.|+. .+.....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 7888877 57889999999999999998 4444444455667899999999999999987665 689999988764
Q ss_pred eEEEeccccceeEEEECCCCCcEEEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
... ....+.=.+-+|.|++++|...
T Consensus 482 y~v-TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDV-TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEe-cCCcccccCcccCCCCcEEEEE
Confidence 332 2222333445566666655443
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=5.9e-08 Score=87.22 Aligned_cols=227 Identities=10% Similarity=-0.000 Sum_probs=153.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCee-eEEecCCCCceEEE---EeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC--
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKR-VRTFGGHQTRAGVL---AWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-- 293 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~l---~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-- 293 (475)
...+||.|+..|...+|...+.+. ......|...|.-+ +-+..-+..++.|.++++.++....... ..|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---eeecccc
Confidence 446899999999999999886543 33334444433322 2234556778888888888886332211 12333
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEE--EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
.+.++++++|++++++.+....|..|.+.... .+.. .......-.+..|+.... .+|++. .||++.|||++...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMA 236 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccc
Confidence 37889999999999999999999999987542 2222 222344456788988776 555544 99999999998754
Q ss_pred eeeee------cCCCCeeEEEEcCCCCe--EEEEEecCCCeEEEEECCCCceEEEecC-------CC-cceEEEEECCCC
Q 011916 371 QLNSV------DTGSQVCNLAWSKNVNE--LVSTHGYSQNQIMVWKYPSMAKVSTLTG-------HS-LRVLYLATSPDG 434 (475)
Q Consensus 371 ~~~~~------~~~~~v~~l~~s~~~~~--l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------h~-~~V~~l~~spdg 434 (475)
..... .+.+.+..+.|++.|.. |+. ...-+.+.+.|++++.....+.. |. ..|..-.|+.++
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~--sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI--SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEE--ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 33222 36788999999986653 333 44567899999998865544432 32 338888898888
Q ss_pred CEEEEEeCCCCEEEEecCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+.+.+++. +.=|++....
T Consensus 315 ~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred cccccccchh-hheeeccccc
Confidence 8777776663 5567765443
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.06 E-value=8.8e-08 Score=101.99 Aligned_cols=275 Identities=12% Similarity=0.166 Sum_probs=159.4
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+..+.+-.+ .++.+..+|.|.+-|.++......-. -...|.+++|+||++.++..+..+++.+-+ .+..++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 35666777654 57777778998888988877655432 357899999999999999999988876644 22222211
Q ss_pred ec-----CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-----CCCc
Q 011916 247 FG-----GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-----NDNQ 315 (475)
Q Consensus 247 ~~-----~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-----~Dg~ 315 (475)
-. ...+....+-|.. ..-+-|+. |.....+.....+.......+.. =..|.|--||+++|+.. ....
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceeeecch-hhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCcee
Confidence 11 1122333344421 11111111 11111111101111111111222 24688999999999832 3378
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee----cCC-CCeeEEEEcCCC
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV----DTG-SQVCNLAWSKNV 390 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~----~~~-~~v~~l~~s~~~ 390 (475)
|+|||-+ +..-..-....+.-.+++|-|.|..+++...-+.|+.|.+|.- +|-....+ ... ..+..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCC
Confidence 9999987 4332222223344578999999997777766566788999983 44333332 222 338999999999
Q ss_pred CeEEEEEecCCCe-EEEEECCCCce--EEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQ-IMVWKYPSMAK--VSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~-I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~ 452 (475)
..|++......+. |++|-+.+... ...+.-..... +.|+|-. ..|..-..+|...++++.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 9999865555555 99999877543 22222222222 6777732 233333356665555543
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=7.5e-07 Score=83.62 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=143.9
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecC
Q 011916 214 SVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 214 ~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+++ .+..|+.+...+ +.++|... +........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~-g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDT-GKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTT-TEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCC-CcEEEEeec
Confidence 678998 77777777788999999998876644 22222 444444 356666666654 45558873 332222221
Q ss_pred -----ccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 291 -----HKSEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 291 -----h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+.+++.++|++.++.... |.|+.++.. ++. ..+...-...+.|+|+|+++.|+++-+ .
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds--~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADS--F 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEET--T
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeeccc--c
Confidence 33567899999999977776543 557888877 443 333334556789999999998888765 7
Q ss_pred CCeEEEEECCCCce-e------eeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEE
Q 011916 358 DRCIRFWNTSNGHQ-L------NSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429 (475)
Q Consensus 358 d~~I~iwd~~~~~~-~------~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 429 (475)
.+.|..+++..... + ..+... +....+++..+|+..++ ....+.|.+++.. ++.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88999999863221 1 112222 24788999999988877 6688999999977 888888876666899999
Q ss_pred E-CCCCCEEEEE
Q 011916 430 T-SPDGQTIVTG 440 (475)
Q Consensus 430 ~-spdg~~l~s~ 440 (475)
| .++...|+..
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 9 4675655543
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.03 E-value=5.8e-07 Score=83.71 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred CCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILS 265 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 265 (475)
++.|..||..+++..-...++. .....+. ..+++.++++++.++.|..||..+++.+..+.............+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 6789999999998877776532 2222221 2336677888889999999999999998887753222222355677777
Q ss_pred EEeCCCcEEEEECCCCCccEEE-ecCcc---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc-----
Q 011916 266 SGSRDRNILQHDLRVSSDYICK-LAGHK---SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA----- 336 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~-~~~h~---~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~----- 336 (475)
.++.++.|..+|.. .++..-. ..... ..........++..++.+..++.|..+|+++|+.+.........
T Consensus 81 v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 78888899999987 4544444 22221 11122222234778888888999999999999998877653322
Q ss_pred -----e-eEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 337 -----V-KAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 337 -----v-~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+ ..+.+. ++ .++++. .++. +.+ |+.+++.+.... ...+.. .....+..|++ +..++.|..||.
T Consensus 160 ~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~~~d~ 229 (238)
T PF13360_consen 160 SSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLYALDL 229 (238)
T ss_dssp EEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEEEEET
T ss_pred eeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEEEEEC
Confidence 1 223333 44 566654 4664 555 999999775444 333333 24567778877 447999999999
Q ss_pred CCCceEE
Q 011916 410 PSMAKVS 416 (475)
Q Consensus 410 ~~~~~~~ 416 (475)
.+++.+-
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998764
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=5.7e-07 Score=82.17 Aligned_cols=231 Identities=11% Similarity=0.148 Sum_probs=140.1
Q ss_pred CCCEEEEEcCCeEEEEECCCC--cEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC----
Q 011916 178 SQNVLAVGLGTCVYLWTASNS--KVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG---- 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~--~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~---- 249 (475)
.+++||+-.|.+|.|-...+. .++..+.+ ...-.=.-++||||+..||.+...|+|+++|+....+. .+..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccccc
Confidence 358999999999999987764 44455554 23345678999999999999999999999998754333 2221
Q ss_pred ---CCCceEEEEeC--------CCEEEEEeCCCcEEEEECCC----CCccEEE--e-cCccCCEEEEEEcCCCCEEEEEe
Q 011916 250 ---HQTRAGVLAWN--------SRILSSGSRDRNILQHDLRV----SSDYICK--L-AGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 250 ---h~~~v~~l~~~--------~~~l~sgs~dg~I~iwd~~~----~~~~~~~--~-~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
-...|..+.|- ...|++-..+|.++-|-+.. ....... + ..+...|.++.++|..++|++||
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 12456666661 13567777788887776532 1122222 2 23467899999999989888887
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC------CeEEEEECCCCceeee-ecCCCCeeEE
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD------RCIRFWNTSNGHQLNS-VDTGSQVCNL 384 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d------~~I~iwd~~~~~~~~~-~~~~~~v~~l 384 (475)
.... +.+. -......+++-..-.+..+..-+.. ..| .+..+|.+-+.+.... ......|..+
T Consensus 167 ~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 167 CEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred cCCC------CCcc----ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 5322 0000 0011112222222111111111110 011 1123344333222211 2345679999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
..||||..|+++ ..+|.|.+|++++.........++
T Consensus 236 SlSPdg~~La~i--h~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 236 SLSPDGSLLACI--HFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EECCCCCEEEEE--EcCCeEEEEecCcchhhcccchhh
Confidence 999999999995 478999999999988877766443
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=7.4e-07 Score=83.79 Aligned_cols=223 Identities=14% Similarity=0.170 Sum_probs=154.3
Q ss_pred CCeEEEEECCCCe-ee--EEecCCCCceEEEEeCC--CEEEEEeC---CCcEEEEECCCC-CccE--EEecCccCCEEEE
Q 011916 230 LGQVQVWDGTQCK-RV--RTFGGHQTRAGVLAWNS--RILSSGSR---DRNILQHDLRVS-SDYI--CKLAGHKSEVCGL 298 (475)
Q Consensus 230 dg~v~iwd~~~~~-~~--~~~~~h~~~v~~l~~~~--~~l~sgs~---dg~I~iwd~~~~-~~~~--~~~~~h~~~V~~l 298 (475)
+.-|++|++.+.. .+ ...-.+.+..+-|+|++ +.|.++.. +|.|..|.+... +... .........-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3569999987422 11 12224666778888864 56877754 578888888743 3221 1112222334889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCC-Cce--eEEEeccccc----------eeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 299 KWSHDDRELASGGN-DNQLLVWNQHS-QQP--TLRLTEHTAA----------VKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 299 ~~s~~~~~lasg~~-Dg~I~iwd~~~-~~~--~~~~~~h~~~----------v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+++++|++|+++.. -|.|.++-++. |.+ ...+..|.+. +....+.|++++|+++.- .-.+|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEE
Confidence 99999999998864 57899999865 332 2122335555 888999999998888765 45679999
Q ss_pred ECCCCceee----eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecC---------CCcceEEEEE
Q 011916 365 NTSNGHQLN----SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTG---------HSLRVLYLAT 430 (475)
Q Consensus 365 d~~~~~~~~----~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~---------h~~~V~~l~~ 430 (475)
++..|.... .+..+.....|.|+|++++..++ ..-+++|.+|.+... ..+..++. .......+.+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999876543 23567788999999999999887 567999999999773 33444432 2345677889
Q ss_pred CCCCCEEEEEeC-CCCEEEEecCCCC
Q 011916 431 SPDGQTIVTGAG-DETLRFWNVFPSL 455 (475)
Q Consensus 431 spdg~~l~s~s~-Dg~I~iW~~~~~~ 455 (475)
++||++|+++.. ...|-+|.+.+..
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 999999998743 3368888887653
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=1.4e-06 Score=97.31 Aligned_cols=234 Identities=10% Similarity=0.107 Sum_probs=148.7
Q ss_pred EEecCC--CCEEEE-EcCCeEEEEECCCCcEEEEeeCCC------------CCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 011916 173 LVDWSS--QNVLAV-GLGTCVYLWTASNSKVTRLCDLGP------------GDSVCSVQWTREGSYISVGT-NLGQVQVW 236 (475)
Q Consensus 173 ~l~ws~--~~~la~-~~~~~V~lw~~~~~~~~~~~~~~~------------~~~V~~v~~spdg~~la~g~-~dg~v~iw 236 (475)
.+++++ ++++.+ ..++.|.+||.........-..+. -.....|++.++++.|+++. .++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 355654 334444 346789999986543322221111 12357899999888766654 45779999
Q ss_pred ECCCCeeeEEecCC-----------------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecC------
Q 011916 237 DGTQCKRVRTFGGH-----------------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAG------ 290 (475)
Q Consensus 237 d~~~~~~~~~~~~h-----------------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------ 290 (475)
|..++.. .++.+- -..-..++++ +.++++...++.|++||.... . +..+.+
T Consensus 652 d~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-~-v~~~~G~G~~~~ 728 (1057)
T PLN02919 652 DFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG-V-TRVFSGDGYERN 728 (1057)
T ss_pred ecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC-e-EEEEecCCcccc
Confidence 9877653 333210 0122456764 456677778899999998632 2 111111
Q ss_pred ---------ccCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEe-------------cc--------ccceeE
Q 011916 291 ---------HKSEVCGLKWSHDDRELA-SGGNDNQLLVWNQHSQQPTLRLT-------------EH--------TAAVKA 339 (475)
Q Consensus 291 ---------h~~~V~~l~~s~~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~-------------~h--------~~~v~~ 339 (475)
.-....+|+++|+++.|+ +-+.++.|++||+.++....... .+ -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 112356799999998554 45567899999998765321110 00 112468
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
++++++|. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.|+
T Consensus 809 vavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~Ir 883 (1057)
T PLN02919 809 VLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSLIR 883 (1057)
T ss_pred eeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCEEE
Confidence 89999998 566544 7999999999887765443321 24678999999986666 77899999
Q ss_pred EEECCCCce
Q 011916 406 VWKYPSMAK 414 (475)
Q Consensus 406 iwd~~~~~~ 414 (475)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988754
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.4e-07 Score=96.02 Aligned_cols=236 Identities=14% Similarity=0.236 Sum_probs=174.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--------------CEEEEEeCCCcEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--------------RILSSGSRDRNILQ 275 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--------------~~l~sgs~dg~I~i 275 (475)
..-.++.|+|.| +||.|+. ..|.+.|..+-+.+..+.-|...|+.+.|.+ -+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335688899877 6888877 5799999999999999999999999999931 26788889999999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC-cEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSH---DD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS-SLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~---~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~ll 350 (475)
||.. ....+..+..|...|..++|-+ +. ..|+.-.....|.+|+..+|+.............++.+.|... ++.
T Consensus 94 ~d~~-~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFV-LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEeh-hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9998 4556667888889999999976 33 4666667778999999999999888777667778899988654 344
Q ss_pred EEecCCCCCeEEEEECCC-------Cceeeee-cCCC-------------------------CeeEEEEcCCCCeEEEEE
Q 011916 351 ASGGGTADRCIRFWNTSN-------GHQLNSV-DTGS-------------------------QVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~-------~~~~~~~-~~~~-------------------------~v~~l~~s~~~~~l~~~~ 397 (475)
+.| ..|.+.+-+... |+..+.. ++.. ....++|+|.-+.++.+
T Consensus 173 ~l~---s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi- 248 (1062)
T KOG1912|consen 173 VLG---SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI- 248 (1062)
T ss_pred EEc---cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-
Confidence 443 466666665421 1211111 1000 02335678877666553
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC--CEEEEEeCCCCEEEEecCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG--QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iW~~~~ 453 (475)
.-...+.++|++-...+....-..+.+.-+.|-|++ ..|++.-.||.+.||--..
T Consensus 249 -~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 -TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 346779999999888888877666767777888765 4788999999999997654
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=2.4e-08 Score=91.38 Aligned_cols=240 Identities=14% Similarity=0.295 Sum_probs=167.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCC------------CceEEEEe-C---CCEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQ------------TRAGVLAW-N---SRILS 265 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~-~---~~~l~ 265 (475)
...+.|++|.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.| + -..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345789999999999999999999999999855432 233455554 35778888 2 25777
Q ss_pred EEeCCCcEEEEECCCCC------------------cc-----------------------EE-EecCccCCEEEEEEcCC
Q 011916 266 SGSRDRNILQHDLRVSS------------------DY-----------------------IC-KLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~------------------~~-----------------------~~-~~~~h~~~V~~l~~s~~ 303 (475)
..+.|++|++|.+.... .. .+ ....|...|.++.++.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 78899999999886331 00 00 11357777899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEEecc-----ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee---
Q 011916 304 DRELASGGNDNQLLVWNQHSQQP---TLRLTEH-----TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--- 372 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h-----~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--- 372 (475)
...++++. |-.|.+|++.-... +..++.| ..-|++..|+|....++.-.+ ..|.|++-|++.....
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCc
Confidence 88888765 57899999874332 2222333 345788999998776665544 7999999999843211
Q ss_pred ---ee--e---c------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCC------------cce
Q 011916 373 ---NS--V---D------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHS------------LRV 425 (475)
Q Consensus 373 ---~~--~---~------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~------------~~V 425 (475)
.. + . .-+.|..+.|+++|+++++ .+-.+|.|||.... .++.++.-|. ..|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---eccceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 11 1 1 1256889999999999997 35678999999754 4566665442 223
Q ss_pred ---EEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 426 ---LYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 426 ---~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
..+.||-|.+.+++|+.....-|+-+.
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 347788888889998888777777644
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=9.8e-07 Score=96.89 Aligned_cols=238 Identities=16% Similarity=0.256 Sum_probs=152.2
Q ss_pred cEEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC---CCcEEEEECC
Q 011916 211 SVCSVQWTREGSYISVGTN---L---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR---DRNILQHDLR 279 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~---d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~~ 279 (475)
.-..|+|-.||.|+|+.+- . ..++||+-+ |.+..+-+.-.+--.+++| +|++|++..+ ...|.+|.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 4567899999999999875 3 468999954 6655554444444567889 6788888764 3456666543
Q ss_pred CCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEec-cccceeEEEECCCCCcEEEEec
Q 011916 280 VSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP--TLRLTE-HTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 280 ~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~-h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
.-.+-...+. .....|..|.|++|+..||..-.|. |.+|-..+..- .+.+.. ....+..+.|+|....-+....
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 2112222222 4566799999999999999988665 99999887642 222221 2234555999997766454433
Q ss_pred CCCCCeEEEEEC----CC----------------Cce----------------eeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 355 GTADRCIRFWNT----SN----------------GHQ----------------LNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 355 Gs~d~~I~iwd~----~~----------------~~~----------------~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.++.+..++. .. |.. ...+...+.|..++|++++..+++ -
T Consensus 369 --~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av--l 444 (928)
T PF04762_consen 369 --SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV--L 444 (928)
T ss_pred --cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE--E
Confidence 4455544432 11 111 122335678999999999988777 5
Q ss_pred cCCCeEEEEECCCCce--------EEEec----------CCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCC
Q 011916 399 YSQNQIMVWKYPSMAK--------VSTLT----------GHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~ 454 (475)
..+|.|.+|....... ...+. .-...+..++|..+...++....+ ..+.++++...
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 5799999988543211 11111 123457888998888777766554 67888888544
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=7.3e-10 Score=113.40 Aligned_cols=211 Identities=11% Similarity=0.195 Sum_probs=155.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEe-CCC-cEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGS-RDR-NILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs-~dg-~I~iwd~~~~~ 282 (475)
.+....+|++|+-+.++|++|+..|.|+++++.+|.......+|...|+-+.. +|..+++.+ ... ...+|++....
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 56788999999999999999999999999999999999999999999999987 565555443 333 57899998655
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ec---cccceeEEEECCCCCcEEEEecCCCC
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TE---HTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
.....+.. -.++.|+.....-+.|..-....+||+.++.++.++ .+ ....-+...|+|+.. |+. .|
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-----nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-----ND 1248 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe-----eC
Confidence 55555443 457888876656666666678999999999877663 22 223347788999988 555 46
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
| .+||++..+.++.++.-..-..=.|+|.|..++. . -.|||+++.+.+..+..-. -..+.|+..|..++
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheecccccccCCCceEEe--e-----chhhhhHHHHHHhcCcccc--ceEEEeccCccchh
Confidence 6 5899998888877754333344569999999998 3 2499999887766554322 13455666665444
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=4.9e-07 Score=91.08 Aligned_cols=256 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCce--
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS-VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRA-- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~-v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v-- 254 (475)
.+.+++++.++.|+-+|.++|+..-..... ..+.+ ... .+..+++++.+|.|..+|.++++.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 356777777899999999999876554432 22222 111 24567788889999999999999988776331110
Q ss_pred ---EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----C---CEEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 011916 255 ---GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----S---EVCGLKWSH--DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 255 ---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~---~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~ 322 (475)
......+..++.++.+|.+..+|... ++.+-...... . ....+.-+| .+..++.++.+|.+..+|..
T Consensus 196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPATAFGGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEEECCEEEEEcCCCEEEEEEccC-ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11112244677788889999888874 33222211000 0 011111222 34567777889999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
+++.+..... .....+.. .+..+++.. .++.+..+|..+|+.+..... ......... .+..|++ +..
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v--~~~ 343 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV--GDS 343 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE--EeC
Confidence 9987765432 11112222 344455543 699999999999988765432 111222222 2456666 778
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEE-EEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+|.|+++|..+++.+...+-....+.. ..+ .+..|+.++.||.|+.++.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999999999988877543333322 222 2447888899999988764
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=1.8e-07 Score=84.11 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=142.7
Q ss_pred CEEEEEcCCeEEEEECCCCcE-EEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKV-TRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~-~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
.++++|..|...+|...+.+. .++++ .+...|+-+.=..+ .--+..++.|.++++.+++.+.....+....-.+.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 355555789999999986654 44554 34443332221112 2347778888889988877554433332222336666
Q ss_pred Ee--CCCEEEEEeCCCcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----
Q 011916 258 AW--NSRILSSGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL----- 328 (475)
Q Consensus 258 ~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~----- 328 (475)
+. ++.++++.+....|..|.+...++.+.. .......=.+..|+.....+|++..||++.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 66 5789999999999999999866655443 23334445678899999999999999999999999654322
Q ss_pred EEeccccceeEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeec--------CCCC-eeEEEEcCCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQ-VCNLAWSKNVNELVS 395 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~-v~~l~~s~~~~~l~~ 395 (475)
+-..|.++++.+.|++.|. .|+.+- .-+.+.+.|++++.....+. +..+ +..-.|+.++..+.+
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2234899999999998664 344543 46889999999987666552 2222 666667666666555
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=6.3e-07 Score=90.33 Aligned_cols=271 Identities=10% Similarity=0.020 Sum_probs=164.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE------EEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS------VQWTR--EGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~------v~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++.+.++.|+-+|..+|+..=...+.....+.. +.-.| ++..+++++.+|.+..+|.++++.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4566777778899999999988654444322111100 00011 456788888999999999999999887764
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEE-EEEEcC--CCCEEEEEeCCCcEEEEECCCCce
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC-GLKWSH--DDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~s~--~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
...........+..++.+..++.+..+|.. .++.+-........+. ...-+| .+..++.++.++.+..+|..+++.
T Consensus 149 ~~~~~ssP~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 149 AGEALSRPVVSDGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred CCceecCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence 432222223345677788889999999998 4444433332111000 000112 233577778889999999999887
Q ss_pred eEEEecccc-------ceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE
Q 011916 327 TLRLTEHTA-------AVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 327 ~~~~~~h~~-------~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+........ ....+.-+| .+..+++.+ .++.+..+|..+|+.+........ ..+. ..+..+++
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~-- 299 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYL-- 299 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEE--
Confidence 665432110 011111122 234455543 689999999999998877654332 1122 24566666
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+..+|.+..+|..+++.+-....-... ...... .+..|+.++.||.|.+.|..+++....
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 567899999999998876543321111 111222 245778888999999999888765443
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.5e-08 Score=94.39 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=120.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
+..+..++++++||++..+....++++..... ......-...-.++.|..+....+++-.......+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34455678899999999888887887765432 111112233345555555555444433212566777888777888
Q ss_pred eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-cCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 372 LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-TGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 372 ~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
...+.|-+.+..++|+||++.|++ +..|..|++-.++..-.+..+ -||+.-|..++.-++ ..|+++|+|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 888889999999999999999999 889999999999877666555 479999999998755 4689999999999999
Q ss_pred cCCCCCCCC
Q 011916 451 VFPSLKAPA 459 (475)
Q Consensus 451 ~~~~~~~~~ 459 (475)
+..+.....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999987744
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.6e-08 Score=94.28 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=107.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEec--CCCCceEEEEeCCCEEEEE---eCCCcEEEEECCCCCc
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKR----VRTFG--GHQTRAGVLAWNSRILSSG---SRDRNILQHDLRVSSD 283 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~----~~~~~--~h~~~v~~l~~~~~~l~sg---s~dg~I~iwd~~~~~~ 283 (475)
..+..++++++||++..+....++++..... +.... .....+..+..+ .....+ +....+.+|.... .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccc--c
Confidence 3455677888999988887777777644322 22221 112223333333 233333 3444555555442 4
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
....+.+|-..+..++|+||+++++++..|..|+|-....-..+..+ .+|..-|..++.-++.. +.++| .|++|+
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~--LlS~s--GD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL--LLSGS--GDKTLR 218 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce--eeecC--CCCcEE
Confidence 44557789999999999999999999999999999877655444443 46999999999988764 44444 599999
Q ss_pred EEECCCCceeeeec
Q 011916 363 FWNTSNGHQLNSVD 376 (475)
Q Consensus 363 iwd~~~~~~~~~~~ 376 (475)
+||+.+|+++.+++
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999997765
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=9.2e-07 Score=82.35 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=136.0
Q ss_pred CCeEEEEECCCCeeeEEecC---CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 230 LGQVQVWDGTQCKRVRTFGG---HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
+|+|..||..+++.+....- ....+......+..+++++.++.|..||.. .++.+-.... ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeec-ccccccee-eecccc
Confidence 68999999999999988763 222222223367788888999999999997 4554444432 22111111 224557
Q ss_pred EEEEeCCCcEEEEECCCCceeEEE-eccc---cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC--
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRL-TEHT---AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ-- 380 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~-~~h~---~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~-- 380 (475)
+++++.++.|+.+|..+++.+... .... ...........+..+++.. .++.|..+|.++|+.+........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCCCCC
Confidence 777778889999999999998874 3221 1111222222255565543 589999999999999887754321
Q ss_pred ---------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 381 ---------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 381 ---------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+..-....++ .+++ ...++.+..+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~--~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYV--SSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEE--ECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEE--EcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222344 5555 4456644444999998765443 2223331 3457778888889999999999
Q ss_pred CCCCC
Q 011916 452 FPSLK 456 (475)
Q Consensus 452 ~~~~~ 456 (475)
.+++.
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 98764
No 297
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.87 E-value=1.3e-07 Score=87.88 Aligned_cols=242 Identities=16% Similarity=0.216 Sum_probs=170.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC-
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS- 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~- 281 (475)
++.+.|++...-|...-+++.+.|.+++||--. .++.-..+. .....++++.+. ...|+.|-.+|++.-+.+...
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 677788888888878889999999999999633 333333332 234577888885 478999999999998876532
Q ss_pred --CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 282 --SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 282 --~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
....+....|...|..+-|+....++++.+.|..+.---.+.+..+-.+.- .....++.+.-. .... |...+
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~---~~fv--Gd~~g 175 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL---YAFV--GDHSG 175 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE---EEEe--ccccc
Confidence 234556678999999999999899999999987665433344332211110 001111111111 2222 33566
Q ss_pred eEEEEECC--CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCCCC
Q 011916 360 CIRFWNTS--NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 360 ~I~iwd~~--~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|....+. .-..+..+ .+...+.++.|.+....|++ |.+|..+.+||+.-.+ ...++.+|...|..+..-+--+
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 66555433 23334444 46788999999999999999 9999999999997654 4567789999999999888888
Q ss_pred EEEEEeCCCCEEEEecCCCCC
Q 011916 436 TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.|++++.||.|.+|+++....
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeeccCCCeEEEEeccceee
Confidence 999999999999999986554
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-07 Score=88.13 Aligned_cols=255 Identities=14% Similarity=0.154 Sum_probs=163.2
Q ss_pred EEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEE
Q 011916 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~ 265 (475)
|.+.+..+-+..+++. .+...|.+++|+|..+ ++..++-+..|.|.|+++...+..+..+ ..+++++|+ .++|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 6666655555444332 6778999999999776 7888999999999999999999998888 889999994 48999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEc------CCCCEEEEEeCCCcEEEEECCC--CceeEEEe-ccc
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWS------HDDRELASGGNDNQLLVWNQHS--QQPTLRLT-EHT 334 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s------~~~~~lasg~~Dg~I~iwd~~~--~~~~~~~~-~h~ 334 (475)
.|..+|.|.+||++.....+..+.+ ...+|..++.- +.|.+|+.... .+..|++.. +.....+. +..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence 9999999999999976655544443 22345544432 23445554443 255566542 22222222 235
Q ss_pred cceeEEEECCCCCcEEEEecCCCC------CeEEE-EECCCCceeeeec---CCCC-----eeEEEE-cCCCCeEEEEEe
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTAD------RCIRF-WNTSNGHQLNSVD---TGSQ-----VCNLAW-SKNVNELVSTHG 398 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d------~~I~i-wd~~~~~~~~~~~---~~~~-----v~~l~~-s~~~~~l~~~~g 398 (475)
+...+++.++-.+.++++.- .+ ..|-. -|-.+|..+.... .++. -....+ .++.++++.. |
T Consensus 331 G~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~-g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV-G 407 (463)
T ss_pred cceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-c
Confidence 66777888887777887753 11 11111 1223333332221 0111 111222 3344555554 7
Q ss_pred cCCCeEEEEECCCCceEEEecCCCcceEEEEECC-C-CCEEEEEeCCCCEEEEecCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-D-GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-d-g~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+.+.+.+||..+++.+.++.-. .+|..++... + +.+|++-. |..++|+....
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 78899999999999999988744 7888877654 3 34666664 55788887653
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=1.6e-05 Score=72.84 Aligned_cols=230 Identities=12% Similarity=0.143 Sum_probs=131.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEec---CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFG---GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~---~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
++.+.+|+.||+-- |..|.|-...+. ..+.... .....=..++| ++.+|+.+...|+|.++|+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 45678888777755 456777654432 1222222 22334467888 468999999999999999973 22222
Q ss_pred ecC-------ccCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CceeEEEe--c-cccceeEEEECCCC
Q 011916 288 LAG-------HKSEVCGLKWSHD------DRELASGGNDNQLLVWNQHS-----QQPTLRLT--E-HTAAVKAIAWSPHQ 346 (475)
Q Consensus 288 ~~~-------h~~~V~~l~~s~~------~~~lasg~~Dg~I~iwd~~~-----~~~~~~~~--~-h~~~v~~l~~sp~~ 346 (475)
+.. -...|.++.|-+- ...|++-..+|.++-|-+.. .+..+.|. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 2346777777542 22566777778877776532 22333332 2 46789999999998
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC------eEEEEECCCCceEEEecC
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN------QIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg------~I~iwd~~~~~~~~~l~~ 420 (475)
+.|++.|. ....-..+. .....+++-..-.+..+...+....++ ...+|.+.+.........
T Consensus 160 ~LLlVgG~--~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 160 RLLLVGGC--EQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CEEEEecc--CCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 75554432 332100000 011112222222222221111111111 224455444333322233
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 421 h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
....|..|..||||+.||+...+|.|.+|++..-.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 567799999999999999999999999999987666554
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=2.8e-05 Score=72.90 Aligned_cols=212 Identities=14% Similarity=0.164 Sum_probs=138.1
Q ss_pred EEecCC-C-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 173 LVDWSS-Q-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT-REGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 173 ~l~ws~-~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s-pdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
...|.+ + .++.+.. ++.|+.|+..+++..... .. . ...+++. ++| .|+++... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LP--G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SS--S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cC--C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 466776 3 5666654 789999999988765433 22 2 6677777 564 55555654 45666998886554443
Q ss_pred C-----CCCceEEEEeC--CCEEEEEeCC--------CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE-EEeC
Q 011916 249 G-----HQTRAGVLAWN--SRILSSGSRD--------RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA-SGGN 312 (475)
Q Consensus 249 ~-----h~~~v~~l~~~--~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la-sg~~ 312 (475)
. .......++++ |++.++.... |.|..++.. ++ +..+...-....+|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccc
Confidence 2 34567788884 5666665543 445556654 33 333333455688999999999776 4566
Q ss_pred CCcEEEEECCCCce-------eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEE
Q 011916 313 DNQLLVWNQHSQQP-------TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNL 384 (475)
Q Consensus 313 Dg~I~iwd~~~~~~-------~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l 384 (475)
.+.|..+++..... ...+....+..-.+++..+|. |+++.. ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 78899999863221 112222223478899999998 444432 58999999987 9888888765 789999
Q ss_pred EE-cCCCCeEEEEE
Q 011916 385 AW-SKNVNELVSTH 397 (475)
Q Consensus 385 ~~-s~~~~~l~~~~ 397 (475)
+| -++.+.|++++
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 47777787754
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=1.7e-07 Score=97.03 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=144.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
++..++.|+-...+..+|+.+.+..+...-..+.|.-+..|++++++|...|+|.+-|.+ ..+.+.++..|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~-s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPN-SFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCC-cCceeeeeeccccceeeee
Confidence 455677777777889999999988888876676799999999999999999999999998 7788999999999998876
Q ss_pred EcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--
Q 011916 300 WSHDDRELASGGN---------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-- 368 (475)
Q Consensus 300 ~s~~~~~lasg~~---------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-- 368 (475)
. .|+.|+++|. |.-|+|||++..+.+.-+.-+.++ .-+.|+|.-...+++.+ ..|...+-|..+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVDTATLS 299 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe--cccceeeccccccC
Confidence 5 6889999885 556899999987766555444443 55678887665566554 789999999433
Q ss_pred -C-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 369 -G-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 369 -~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
. .-+..+ ..++.+..+.++++++.++. |..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 2 112223 34566999999999999999 99999999997
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=1.7e-07 Score=84.01 Aligned_cols=231 Identities=13% Similarity=0.204 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe------------cCCCC--ceEEEEeCCCEEEEEeCCCcEEEEE
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF------------GGHQT--RAGVLAWNSRILSSGSRDRNILQHD 277 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~------------~~h~~--~v~~l~~~~~~l~sgs~dg~I~iwd 277 (475)
|+.+.++. ...|+++..++.+......++.+...+ ..|++ +...+..-++-++++..||.+.+.+
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55666653 345777777777666655444333322 22221 2222333357899999999999999
Q ss_pred CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
.+.......+...-...-.+.+....++.+.+++- -+..++|+++..+.+..-......|.+++-+|....++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 87422222222221112223333445555555432 2356777776443322222223449999999999999999
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCC-CCeEEEEEecCCCeEEEEECCCCceEE-------------
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVS------------- 416 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~-~~~l~~~~g~~dg~I~iwd~~~~~~~~------------- 416 (475)
|+ .||.+.+||.+.......+ .+...+..+-|+|. +..|++ +.+||.+.-||..+. .+.
T Consensus 198 gt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~~-~l~i~~~~s~~s~WLs 272 (319)
T KOG4714|consen 198 GT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDASTT-FLSISNQASVISSWLS 272 (319)
T ss_pred ec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCCc-eEEecCcccccccccc
Confidence 76 9999999999987554443 47788999999984 566777 779999999997631 111
Q ss_pred --------EecC----CCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 417 --------TLTG----HSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 417 --------~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+.+ -...|+. |.--|..|++|+.-+.|++.+
T Consensus 273 gD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 273 GDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 0000 0111222 333577899999888888875
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=4.4e-08 Score=98.92 Aligned_cols=196 Identities=20% Similarity=0.404 Sum_probs=144.4
Q ss_pred ceeEEecCCC---CEEEE-EcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-
Q 011916 170 YLNLVDWSSQ---NVLAV-GLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQC- 241 (475)
Q Consensus 170 ~v~~l~ws~~---~~la~-~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~- 241 (475)
.+-.+.|++. .+-++ .....-.+|++.. ...+.....+|...|+.+.|.|+. ..|++++-|-.|..||+...
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 3445788863 34444 4456678898753 334444444899999999999954 68999999999999998764
Q ss_pred eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~ 317 (475)
..+..+..-......+.|+ ++.++ .+....|.+||.+.+..+...+++|...|.+++|+. ....+.+.++|++|+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 4455555555677888995 45444 456678999999988899999999999999999976 344788899999999
Q ss_pred EEECCC-------------------------------------------------------CceeEEEeccccceeEEEE
Q 011916 318 VWNQHS-------------------------------------------------------QQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 318 iwd~~~-------------------------------------------------------~~~~~~~~~h~~~v~~l~~ 342 (475)
.||... .++++.|.+|...|....|
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 999653 1256778888888877777
Q ss_pred CCCC---------CcEEEEecCCCCCeEEEEECCC
Q 011916 343 SPHQ---------SSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 343 sp~~---------~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
-..+ .+-+++-+ .|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWS--kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWS--KDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEee--cCCceEeeeccH
Confidence 4322 23455544 899999998753
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=2.4e-07 Score=95.85 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=140.1
Q ss_pred cCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 176 WSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 176 ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
-+++.++.+|....+..+|+.+.+..+....+..+ |+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 36778999999999999999999988887765433 55444 4689999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEE---CC
Q 011916 256 VLAWNSRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWN---QH 322 (475)
Q Consensus 256 ~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd---~~ 322 (475)
.+...|++|++++. |.-|+|||+|. -..+.-+..+.++ .-+.|+|. ...+++++..|...+.| +.
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 99999999999975 45579999983 3333223333332 44567773 45788888899999999 33
Q ss_pred CC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 323 SQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 323 ~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
+. ..+..+......+.++.+++.+..++. |..+|.|.+|-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf---gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF---GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE---ecccCcEeeec
Confidence 33 223344445566999999999995555 45899999997
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=3.7e-08 Score=96.38 Aligned_cols=170 Identities=12% Similarity=0.263 Sum_probs=134.3
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.+..+.+|...|..++--.+.+-+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S----- 801 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS----- 801 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-----
Confidence 3566789999999888777888999999999999999873 2356778889999999999999886655
Q ss_pred CCCeEEEEECCCCceeeeec---CCCCeeEEEEcCC-CCeEEEEEecCCCeEEEEECCCCceEEEec-----CCCcceEE
Q 011916 357 ADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRVLY 427 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~-~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~ 427 (475)
.|+.|++||.--|..+.... ..+.+..+..-++ .+.++.+.++...+|+++|.+..+.+.+++ +...-+.+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 49999999988787766442 2344455555454 444554434678899999999988777765 34466899
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++..+.|+.++.+-..|.|.+.|..++...+
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 9999999999999999999999999888655
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=4.7e-05 Score=71.77 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=157.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCeeeEEecCCCCce----EEEEeCCCEEEEEeC-----CCcEEEEECC
Q 011916 211 SVCSVQWTR-EGSYISVGTNLGQ-VQVWDGTQCKRVRTFGGHQTRA----GVLAWNSRILSSGSR-----DRNILQHDLR 279 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~dg~-v~iwd~~~~~~~~~~~~h~~~v----~~l~~~~~~l~sgs~-----dg~I~iwd~~ 279 (475)
....++.+| ++..++++-.-|+ ..+||..+++....+....++- ..++-+|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344678888 6677788877776 6889999999888776444432 233336888888744 4789999998
Q ss_pred CCCccEEEecCccCCEEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEE--E--eccccce
Q 011916 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGN------------------DNQLLVWNQHSQQPTLR--L--TEHTAAV 337 (475)
Q Consensus 280 ~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~------------------Dg~I~iwd~~~~~~~~~--~--~~h~~~v 337 (475)
.....+..+..|.-.-..+.+.|||+.|+++.. +-.|...|..+++.+.+ + ..|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 666777788888777788999999988877642 23466677788887766 4 3378899
Q ss_pred eEEEECCCCCcEEEEec-CC---CCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 338 KAIAWSPHQSSLLASGG-GT---ADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~-Gs---~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
..+++.++|.-+++.-. |. .---|.+++- ++.+..+ .....+-+++++.++..++++ +-..|.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCCCEEE
Confidence 99999999874443211 00 0112344433 3323332 234679999999999999885 55778999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
+||..+++.+....-. .+..++-.+++ +++|.+ .|.
T Consensus 243 ~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred EEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence 9999999988766533 36677777777 555544 454
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=3.6e-08 Score=91.48 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=119.0
Q ss_pred ecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----eeeEE
Q 011916 175 DWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-----KRVRT 246 (475)
Q Consensus 175 ~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-----~~~~~ 246 (475)
+|+-+ .-+++|.+..|-|-|++++..... .....|.++.|...++++..|+.+|.|.++|+... .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66643 237788899999999999875443 35688999999999999999999999999999764 22222
Q ss_pred ecCCCCceEEEE---eCCCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEE--EEEcCCCCEEEEEeCCCcEEEE
Q 011916 247 FGGHQTRAGVLA---WNSRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCG--LKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 247 ~~~h~~~v~~l~---~~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~--l~~s~~~~~lasg~~Dg~I~iw 319 (475)
--|...|+++. +++.+|.+.+.+|+|.+||.+..+ .-+..+.+|...-.- +...+....++++|.|...+||
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 25888888876 478999999999999999999432 237778888654332 3345566788899999999999
Q ss_pred ECCCCceeEEEec
Q 011916 320 NQHSQQPTLRLTE 332 (475)
Q Consensus 320 d~~~~~~~~~~~~ 332 (475)
.++.+..+.++.-
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999988776653
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=6.5e-08 Score=89.83 Aligned_cols=157 Identities=18% Similarity=0.285 Sum_probs=116.2
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC----CccEEE
Q 011916 216 QWTR--EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS----SDYICK 287 (475)
Q Consensus 216 ~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~~ 287 (475)
+|+- .|-++++|.. -.|-+-|++++-.. .|. ..+.|.++.|. ++++..|+++|.|..+|++.. +.+.+.
T Consensus 218 awSlni~gyhfs~G~s-qqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLS-QQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeeccccc-ceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 6664 3445445544 56888888876443 232 56778888884 689999999999999999865 233333
Q ss_pred ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEE--CCCCCcEEEEecCCCCCeE
Q 011916 288 LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAW--SPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~--sp~~~~ll~sg~Gs~d~~I 361 (475)
.-|...|+++..-. ++++|.+.+.+|+|++||++.-++ +.++.+|...-.-+-+ .+... +++++| .|...
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~G--dDcyt 370 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVG--DDCYT 370 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEcc--CeeEE
Confidence 34889999998877 788999999999999999997766 8888888654443333 44444 444455 89999
Q ss_pred EEEECCCCceeeeecCCC
Q 011916 362 RFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~ 379 (475)
+||.++.|..+.++....
T Consensus 371 RiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEecccCceeeccCCCC
Confidence 999999999999886543
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=4.7e-05 Score=71.78 Aligned_cols=211 Identities=16% Similarity=0.206 Sum_probs=143.9
Q ss_pred EecCCC--CEEEEEc--CCeEEEEECCCCcEEEEeeCCCCCc-EEEEEEcCCCCEEEEEeC-----CCeEEEEECC-CCe
Q 011916 174 VDWSSQ--NVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDS-VCSVQWTREGSYISVGTN-----LGQVQVWDGT-QCK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~--~~~V~lw~~~~~~~~~~~~~~~~~~-V~~v~~spdg~~la~g~~-----dg~v~iwd~~-~~~ 242 (475)
++.+|. ..++.+- +....+||..+++....+....... --.-.|++||++|++.-. .|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 556663 4556655 6689999999999888775422211 225679999999998644 4889999998 678
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEe------------------CCCcEEEEECCCCCccEEE--e--cCccCCEEEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGS------------------RDRNILQHDLRVSSDYICK--L--AGHKSEVCGL 298 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs------------------~dg~I~iwd~~~~~~~~~~--~--~~h~~~V~~l 298 (475)
.+.++..|.-.-..+.+ ++..|+++. .+-++...|.. .+..+.+ + ..|.-.|..+
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccccceeeE
Confidence 88888877766666666 455666552 12334455555 4444444 4 3377789999
Q ss_pred EEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEEe-------ccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 299 KWSHDDRELASGGNDN-------QLLVWNQHSQQPTLRLT-------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg-------~I~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++..+|..++..-..| .|.+++.. +.+..+. .-...+-+|++++++..+++++- .-+.+.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 9999986665543333 23344332 2222221 23567899999999998888875 89999999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
|..+++.+..... ..+|.++-.+++
T Consensus 245 d~~tg~~~~~~~l-~D~cGva~~~~~ 269 (305)
T PF07433_consen 245 DAATGRLLGSVPL-PDACGVAPTDDG 269 (305)
T ss_pred ECCCCCEeecccc-CceeeeeecCCc
Confidence 9999998877643 346778777777
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2.8e-07 Score=82.59 Aligned_cols=144 Identities=14% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEEecCCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQWTREGSYISVGTN-----LGQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~spdg~~la~g~~-----dg~v~iwd~~~~~~~~~~~~h~~ 252 (475)
+.++.+..|+.+.+.+.+... ........|. .-.+.+....++.+.++.. -+..++|++...+.+..-.....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 467777779999998876511 0111110111 1112233334555544332 23455666554333222222223
Q ss_pred ceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 011916 253 RAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 253 ~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.|.+++-++ +++++|+.||.+.+||.+....+...+..|+.+|..+.|+| ++..|+++++||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488888764 78999999999999999977667777889999999999999 778999999999999999875
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.68 E-value=1.7e-05 Score=82.03 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=162.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCC-----CcEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPG-----DSVC--SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~-----~~V~--~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
+.+++++.++.|+-.|..+++..-....... ..+. .+... ++..+++++.+|.|.-+|.++++.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4566666789999999999886654433221 0000 11111 22678889999999999999999998876433
Q ss_pred Cc-----e-EEEEeCCCEEEEEe---------CCCcEEEEECCCCCccEEEecCccC--------------------CE-
Q 011916 252 TR-----A-GVLAWNSRILSSGS---------RDRNILQHDLRVSSDYICKLAGHKS--------------------EV- 295 (475)
Q Consensus 252 ~~-----v-~~l~~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~--------------------~V- 295 (475)
.. + ......+..++.++ .++.+..+|..+ ++.+-....... .|
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC-CceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 21 1 12223345555554 367888888874 443333322110 01
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEeccccce------eEEEEC----CCCC
Q 011916 296 CGLKWSHDDRELASGGNDN------------------QLLVWNQHSQQPTLRLTEHTAAV------KAIAWS----PHQS 347 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg------------------~I~iwd~~~~~~~~~~~~h~~~v------~~l~~s----p~~~ 347 (475)
....+.+.+..++.++.++ .|.-+|..+++.+..+..-.... ....+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1233444566777777655 79999999999888764311100 001111 1222
Q ss_pred --cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE----------------ecCCCeEEEEEC
Q 011916 348 --SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH----------------GYSQNQIMVWKY 409 (475)
Q Consensus 348 --~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----------------g~~dg~I~iwd~ 409 (475)
.++..++ .+|.+..+|..+|+.+....... ..+..+| ..+++.. ...+|.|.-+|.
T Consensus 300 ~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 300 PVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred eeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 2445543 89999999999999988765321 1123333 2233210 123678888999
Q ss_pred CCCceEEEecCCC--------cce--EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 410 PSMAKVSTLTGHS--------LRV--LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 410 ~~~~~~~~l~~h~--------~~V--~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.+++.+-+..... ... ..+.. .+..|+.++.||.|+.+|..+++......
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 9988876665321 111 11222 56688888999999999999998776543
No 312
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=3.9e-07 Score=83.62 Aligned_cols=201 Identities=14% Similarity=0.287 Sum_probs=137.1
Q ss_pred CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc----EEEecCccC------------CEEEEEEcCCCC--EEEE
Q 011916 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY----ICKLAGHKS------------EVCGLKWSHDDR--ELAS 309 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~----~~~~~~h~~------------~V~~l~~s~~~~--~las 309 (475)
....|+++.|+ |.+|++|...|.|.++.-.....+ ...+++|.. .|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568888885 689999999999999976543322 233455542 578889987543 6677
Q ss_pred EeCCCcEEEEECCCCc-------------------e-----------------------eEEE-eccccceeEEEECCCC
Q 011916 310 GGNDNQLLVWNQHSQQ-------------------P-----------------------TLRL-TEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~-------------------~-----------------------~~~~-~~h~~~v~~l~~sp~~ 346 (475)
.++|.+|++|.+.... + .... ..|..-+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 0 0011 2477778999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCce---eeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQ---LNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA---- 413 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~---- 413 (475)
..++.+ .|-.|.+|++.--.. +..++. ..-|++..|+|....++.. .++.|.|++-|++...
T Consensus 185 et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 185 ETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred heeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccC
Confidence 877764 688999999864321 112221 1347888999976655543 5688999999997321
Q ss_pred --eEEEe----------cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 414 --KVSTL----------TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 414 --~~~~l----------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+..+ .+-...|..+.|+++|+++++-+. -+|+|||+.....
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 11111 122356888999999999987654 5899999986543
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=9.7e-06 Score=83.98 Aligned_cols=214 Identities=13% Similarity=0.199 Sum_probs=147.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-eEEEEe-CC-CEEEEEeCCCc-----EEEEECCCCC-----
Q 011916 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-AGVLAW-NS-RILSSGSRDRN-----ILQHDLRVSS----- 282 (475)
Q Consensus 216 ~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~sgs~dg~-----I~iwd~~~~~----- 282 (475)
+|++.+..+|.|+.+|.|.+.+ ...+.++.+..+... |..+-. ++ .+|++.+.|+. ++|||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 3678899999999999998887 344555778777777 444433 33 58888777654 8999997431
Q ss_pred ccE--EEecC-----ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 283 DYI--CKLAG-----HKSEVCGLKWSHDDRELASGGNDNQLLVWNQH----SQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 283 ~~~--~~~~~-----h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~----~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
.++ ..+.. ...++++++.+.+-+.+|+|-.+|.|..+.-+ .+....-......+|+++++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 34678999999999999999999999988643 11112222235679999999999987433
Q ss_pred EecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEE
Q 011916 352 SGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYL 428 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l 428 (475)
+. .-..|.+|.+....+ ...+ .++..+.|..+++....++++ ....|.+|+......-..+. +|......+
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 33 467899999884442 3334 466788888998887767763 46789999998877777777 776554443
Q ss_pred EECCCCCEEEE
Q 011916 429 ATSPDGQTIVT 439 (475)
Q Consensus 429 ~~spdg~~l~s 439 (475)
. -|.+|+.
T Consensus 263 ~---~g~~L~v 270 (933)
T KOG2114|consen 263 S---FGLLLCV 270 (933)
T ss_pred e---cCEEEEE
Confidence 3 2544444
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-06 Score=84.39 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=165.5
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEee--CCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecC--CCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCD--LGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGG--HQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~--~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~--h~~ 252 (475)
.+-++.++.||.++.|.-..-..+.... ..|...|.+++.+.+|.++.+++. |..++++|+++...+..++- -.+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 4568888999999999876533333321 267788899999999999999887 99999999987665543331 122
Q ss_pred ceEEEEeCC---CEEEE-EeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----
Q 011916 253 RAGVLAWNS---RILSS-GSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---- 323 (475)
Q Consensus 253 ~v~~l~~~~---~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---- 323 (475)
.+..+.-.| ..|++ .-.++.|.++|-..... ....-.-|..+|..+.+++-+..+++....|.|.-|....
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 222221123 13433 34678999999886553 3344556999999999999999999999999999999873
Q ss_pred --Cce---------eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---------------
Q 011916 324 --QQP---------TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------------- 377 (475)
Q Consensus 324 --~~~---------~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------------- 377 (475)
.+. +..+........++.|+|++..+...+ .|..|+++++++|+.++.++.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 111 122233456778999999999776654 799999999999976655421
Q ss_pred ------------------C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 378 ------------------G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 378 ------------------~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+ ..-..+.|...|++|+- |.- =-|++.++.+++.+..+
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t~-~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GTI-LGIKVINLDTNTVVRIL 313 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ecc-eeEEEEEeecCeEEEEe
Confidence 0 12456778888988887 433 33788888877766544
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.2e-07 Score=61.19 Aligned_cols=39 Identities=38% Similarity=0.647 Sum_probs=36.7
Q ss_pred CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 412 MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 412 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
++++.++.+|...|.+|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=8.1e-05 Score=73.78 Aligned_cols=252 Identities=17% Similarity=0.243 Sum_probs=145.0
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CC--------------
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GH-------------- 250 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h-------------- 250 (475)
..+.++|||+++++...+... ...+....|+|+|+.+|.... +.|.+++..+++..+.-. +.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 346899999999988777642 567889999999999999875 789999987775443221 20
Q ss_pred --CCceEEEEe--CCCEEEEEeCC-Cc-----------------------------------EEEEECCCCCccEEE-e-
Q 011916 251 --QTRAGVLAW--NSRILSSGSRD-RN-----------------------------------ILQHDLRVSSDYICK-L- 288 (475)
Q Consensus 251 --~~~v~~l~~--~~~~l~sgs~d-g~-----------------------------------I~iwd~~~~~~~~~~-~- 288 (475)
-..-..+.| +++.|+....| .. +.++|+......... .
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 011234555 34555543221 11 233444422211111 1
Q ss_pred --cCccCCEEEEEEcCCCCEEEEE--eCC---CcEEEEECCCCceeEEEec-cccce---eEEEEC-CCCCcEEEEecCC
Q 011916 289 --AGHKSEVCGLKWSHDDRELASG--GND---NQLLVWNQHSQQPTLRLTE-HTAAV---KAIAWS-PHQSSLLASGGGT 356 (475)
Q Consensus 289 --~~h~~~V~~l~~s~~~~~lasg--~~D---g~I~iwd~~~~~~~~~~~~-h~~~v---~~l~~s-p~~~~ll~sg~Gs 356 (475)
..-...+..+.|.++++.|+.. ..+ ..+.++|..++........ ..+.| ..+.|. +++..++.....+
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 1233457889999998844443 222 2477788877655433332 22222 355554 7777666665422
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEec---CCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 357 ADRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGY---SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~---~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
.-..|.+++..++.........-.|.. +.|+++++.|+.++.. ....|+..++..+..+..++.....-..+.|||
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence 234566677766664433344455644 7888988887765322 123566667663455666665444446899999
Q ss_pred CCCEEEEE
Q 011916 433 DGQTIVTG 440 (475)
Q Consensus 433 dg~~l~s~ 440 (475)
+|++++-.
T Consensus 338 dg~y~v~~ 345 (353)
T PF00930_consen 338 DGKYYVDT 345 (353)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99988754
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=0.00013 Score=69.64 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=150.8
Q ss_pred CeEEEEECCCCcEEEEeeCCCC------CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 188 TCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~------~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
..|.+||..+-.....+.+... .....++++.||+++++... .-.|.|.|++..+.+.++.. .++..-.-+
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~ 145 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPS 145 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEec
Confidence 3699999999988877766433 12234678899998888654 46799999999999887752 233333334
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccEEEec----CccCCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEec
Q 011916 260 NSRILSSGSRDRNILQHDLRVSSDYICKLA----GHKSEV-CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTE 332 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~h~~~V-~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~--~~~~ 332 (475)
.+.-+.+-|.||.+....+...++...+.. .....+ ..-++...+..++.-+.+|.|+--|+....... .+..
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 557788999999999999986666543321 111222 223344455566667888999998887664322 1111
Q ss_pred ----------cccceeEEEECCCCCcEEEEec-C---C-C--CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 333 ----------HTAAVKAIAWSPHQSSLLASGG-G---T-A--DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 333 ----------h~~~v~~l~~sp~~~~ll~sg~-G---s-~--d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
..+.-.-+++++....|++.-. | + . ...|.++|+.+++.+..+....++.+|..+.+.+=++.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 1223345677766555554421 1 0 1 13588889999999999988888999999998875554
Q ss_pred EEecCCCeEEEEECCCCceEEEecC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
+....++.|.+||..+++.+.++.+
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE--
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3244689999999999999988874
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=2.6e-05 Score=80.07 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=161.3
Q ss_pred ceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011916 157 HKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVW 236 (475)
Q Consensus 157 ~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iw 236 (475)
.++.-+|+-.|+||.. .++|..|.|+|+-+.+.+..+.+..=...+-+.--++...+.++..+..|....|
T Consensus 54 ~~~~v~pg~~deyy~f---------~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~ 124 (635)
T PRK02888 54 GKYEVAPGELDEYYGF---------WSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLN 124 (635)
T ss_pred CcccCCCCCcccEEEE---------eeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccC
Confidence 5667778888888743 4567789999999999887776642111111111122222222211111112222
Q ss_pred ECCCCeeeEEecCCCCc--eEEEEeCCCEEEEEeC-CCcEEEEECCCCCccEEEecCccCCEEE----------------
Q 011916 237 DGTQCKRVRTFGGHQTR--AGVLAWNSRILSSGSR-DRNILQHDLRVSSDYICKLAGHKSEVCG---------------- 297 (475)
Q Consensus 237 d~~~~~~~~~~~~h~~~--v~~l~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~---------------- 297 (475)
. ..|... -+.=.++|++|+.-.. +..|...+++.-......-....+.+.+
T Consensus 125 g----------D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 125 G----------DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred C----------CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCc
Confidence 1 011111 1112235566666543 4444444443211100000111112222
Q ss_pred ---EEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-----------------
Q 011916 298 ---LKWSHDDRELASG-GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT----------------- 356 (475)
Q Consensus 298 ---l~~s~~~~~lasg-~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs----------------- 356 (475)
+-+++||+.+... -..+.+.+.|..+.+...++.- .+....++++|+|+++++++..+
T Consensus 195 e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 195 EFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred ccccccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 2334566544322 2345677788887766665543 23446778888888887775211
Q ss_pred --------------------CCCeEEEEECCC-----CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 357 --------------------ADRCIRFWNTSN-----GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 357 --------------------~d~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.++.|.+.|..+ .+.+..+..+.....+.++|||++++++ +..++.+.|+|+.+
T Consensus 274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~tVSVIDv~k 352 (635)
T PRK02888 274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPTVTVIDVRK 352 (635)
T ss_pred EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCcEEEEEChh
Confidence 125688888887 4667777888889999999999999987 66789999999987
Q ss_pred Cce------------EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 412 MAK------------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 412 ~~~------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+. +.+.+- .......+|.++|....|.--|..|..|++..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 653 344433 23346678999999888888999999999876
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=5.4e-05 Score=77.75 Aligned_cols=183 Identities=9% Similarity=0.078 Sum_probs=112.5
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCCCEEEEEeCC----CcEEEEECCCCCccEEEecC
Q 011916 217 WTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNSRILSSGSRD----RNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 217 ~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~ 290 (475)
+.+||+.+... -..+.+.+.|.++.+...++.- .......+..++.++++.+.+ .++...+.. ....+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-ERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccc-cCceEEEEch
Confidence 34455544222 2245677778777776666542 222334444467777666532 122222222 1111111110
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS----Q-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.. + .++.++|++...+ ++.|.+.|.++ + +.+..+ .-......+.++|||+++++++. .+.++.+.|
T Consensus 279 ~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVID 349 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVID 349 (635)
T ss_pred HH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEE
Confidence 00 0 0234577766663 57899999998 3 333333 34566789999999999999976 899999999
Q ss_pred CCCCce------------eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 366 TSNGHQ------------LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 366 ~~~~~~------------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
+.+.+. +..+..+-.....+|.++|+...+ -+-|.+|..|++..
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHH
Confidence 988653 455556666778899999875555 67899999999875
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=9.5e-05 Score=70.56 Aligned_cols=262 Identities=16% Similarity=0.191 Sum_probs=151.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCCC-ceE-
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQT-RAG- 255 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~~-~v~- 255 (475)
+.|+++|.+++++...+..+. .-.+..+|+++.++++. ..-.|.+||..+-.....+.-... +..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 489999999999988887443 33567899999888753 234699999999888776653322 222
Q ss_pred -------EEEeCCCEEEEE--eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CC
Q 011916 256 -------VLAWNSRILSSG--SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQ 324 (475)
Q Consensus 256 -------~l~~~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~ 324 (475)
.+.-++++++.. +-...|.|.|+. .++.+..+.. .+ |.+.+ | ..+-+.+-+.||.+.-..+. .|
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~-~~kvv~ei~~-PG--C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLA-AKKVVGEIDT-PG--CWLIY-PSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETT-TTEEEEEEEG-TS--EEEEE-EEETTEEEEEETTSCEEEEEETSTS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECC-CCceeeeecC-CC--EEEEE-ecCCCceEEEecCCceEEEEECCCC
Confidence 222234443333 223345555554 3333333221 11 22222 3 23457788889999999888 55
Q ss_pred ceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecC-----------CCCeeEEEE
Q 011916 325 QPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDT-----------GSQVCNLAW 386 (475)
Q Consensus 325 ~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~-----------~~~v~~l~~ 386 (475)
+...+... ....+..-++...+..++... .+|.|+-.|+....... .+.. .+.-.-+++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 55432211 111222334444443344332 78999998887654221 1110 122344677
Q ss_pred cCCCCeEEEE-EecCCC-------eEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEE-eCCCCEEEEecCCCCC
Q 011916 387 SKNVNELVST-HGYSQN-------QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTG-AGDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~-~g~~dg-------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~-s~Dg~I~iW~~~~~~~ 456 (475)
++..+.|++. +...++ .|.++|+.+.+.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..+++.
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 7766555543 322222 588889999999998873 34578999998766 66554 4588999999999877
Q ss_pred CCCcc
Q 011916 457 APALV 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
...+.
T Consensus 325 ~~~~~ 329 (342)
T PF06433_consen 325 VRSIE 329 (342)
T ss_dssp EEEE-
T ss_pred Eeehh
Confidence 66544
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.48 E-value=2.6e-05 Score=78.45 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=130.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEEec-CCCCceEEEEeCCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT---NL-GQVQVWDGTQCKRVRTFG-GHQTRAGVLAWNSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~---~d-g~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~ 262 (475)
..+.+-|.+ +.....+. .....+..-+|+|++..++.-. .. ..+.++++.+++....+. ........++.+|+
T Consensus 173 ~~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC
Confidence 355555655 44444443 3456777889999998766543 22 469999999887666554 11223333444564
Q ss_pred -EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEecccccee
Q 011916 263 -ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 263 -~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
++++...||...||-+...+.....+....+.-+.=.|+|||+.++..+.. | .|.++|+..... ..+......-.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 556667788665554433333344455444444567899999998877643 3 577777776654 33333333333
Q ss_pred EEEECCCCCcEEEEecCCCCCe--EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 339 AIAWSPHQSSLLASGGGTADRC--IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.-.|+|+|++++.... .+|. |.+.|+.++..+..+........-.|.+++..++..++.
T Consensus 330 ~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 330 NPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 7899999999888763 3454 777777776666666666666677888999988886443
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.48 E-value=2e-05 Score=80.07 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=161.7
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--- 244 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--- 244 (475)
..+++|++-..+.+..++..|.||+|+-.+++......-+..+.+..+..+++..++|+|+..|.|.|+-+.....-
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 45678888777778888889999999999888766654344566677778999999999999999999987663221
Q ss_pred --EEe-cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 245 --RTF-GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 245 --~~~-~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
... ..|..+|++++| |+..+++|...|+|..-.+.... ...+.+....++|..|... ++.+|++... ..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RC 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hh
Confidence 111 247889999999 57899999999999998887411 1223344456677777764 3434444332 23
Q ss_pred EEEECCCCceeEEEe--cccc-ceeEEEECCC----CCcEEEEecCCCCCeEEEEECC-CCceeeeecC-----------
Q 011916 317 LVWNQHSQQPTLRLT--EHTA-AVKAIAWSPH----QSSLLASGGGTADRCIRFWNTS-NGHQLNSVDT----------- 377 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~--~h~~-~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~----------- 377 (475)
.+++.+.+.. .++- ...+ .-...+|-|. .+-.+.++ .-..|+|... .|+.+.+...
T Consensus 192 ~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 192 ILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARPPAPE 266 (726)
T ss_pred heeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccCCCCc
Confidence 4445443321 1111 1111 1233344433 23334432 4456778654 2444333211
Q ss_pred ---CC-----------C-----eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 378 ---GS-----------Q-----VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 378 ---~~-----------~-----v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
.+ . ...+.+-..+ .+++ ..+-.|+|+|..+.+.+.-..+ ...|..+.- +|+-|+
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa---~te~Giyv~d~~~~~v~l~se~-~~DI~dVs~--~~neiF 339 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLA---WTEVGIYVFDSNNSQVYLWSEG-GHDILDVSH--CGNEIF 339 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEeecc-eEEE---eecceEEEEEeccceEEEeecC-CCceeEEee--cCceEE
Confidence 00 0 0111111112 2222 1233488888877665544432 234555544 566677
Q ss_pred EEeCCCCEEEEecCCCCC
Q 011916 439 TGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~ 456 (475)
.--.|+.+++..+....+
T Consensus 340 vL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 340 VLNLDRGLKVESVASRQR 357 (726)
T ss_pred EEecCCceeEEEeehhHH
Confidence 777788888888876654
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=6.2e-07 Score=57.77 Aligned_cols=38 Identities=34% Similarity=0.703 Sum_probs=35.8
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
+++..+.+|.+.|.+|+|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999999999999999999999999999999997
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=7.4e-06 Score=84.25 Aligned_cols=182 Identities=14% Similarity=0.225 Sum_probs=131.1
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...+.|++++++.|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+-+.+...++
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 346778888999999999999999999862 22 334445443 568999999999999999999888776665
Q ss_pred eccccceeEEEECCC----CCcEEEEecCCCCCeEEEEECC---CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 331 TEHTAAVKAIAWSPH----QSSLLASGGGTADRCIRFWNTS---NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
. ...++.+|+++|+ ...-+++|| ..| +.++.-. ....+..-...++|.++.|. |++++- . +|-.
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG--~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW--a-nd~G 180 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGG--MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW--A-NDDG 180 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecC--cce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE--e-cCCC
Confidence 4 4678999999998 233566665 566 7776532 22233233567889999996 567766 3 4566
Q ss_pred EEEEECCCCceEEEecCCCcc------eEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLR------VLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~------V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
|+|||..+.+.+..++..... ...+.|.++.+ |+.| ...+|+|..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999999999988877653333 34577877654 4444 45579999998
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=7e-08 Score=96.33 Aligned_cols=200 Identities=18% Similarity=0.311 Sum_probs=136.6
Q ss_pred CCCCCCceeEEecCCC---CEEEEEc-CCeEEEEECCCCcEE-EEeeCCCCCcEEEEEEcC-CCCEEEEEeC----CCeE
Q 011916 164 SLQDDFYLNLVDWSSQ---NVLAVGL-GTCVYLWTASNSKVT-RLCDLGPGDSVCSVQWTR-EGSYISVGTN----LGQV 233 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~---~~la~~~-~~~V~lw~~~~~~~~-~~~~~~~~~~V~~v~~sp-dg~~la~g~~----dg~v 233 (475)
...+-.|+.|++|.-+ -++++|. +|.|.+-......-. ..+..++....++++|++ |.++||+|-. |..+
T Consensus 52 n~sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 52 NWSDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred hcccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 3456678899999854 3666665 788888877654332 233336678899999998 6788888854 5679
Q ss_pred EEEECCCC--ee--eEEecC-CCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCC
Q 011916 234 QVWDGTQC--KR--VRTFGG-HQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDR 305 (475)
Q Consensus 234 ~iwd~~~~--~~--~~~~~~-h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 305 (475)
.|||+.++ .+ ...|.+ -.....+++| +..++.+|...+.++++|++... .....-.+..+.++...| .++
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCC
Confidence 99999876 11 122222 3345558888 46788899999999999998322 222222344577788888 777
Q ss_pred EEEEEeCCCcEEEEE-CCCC-ceeEEEeccc----cceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 306 ELASGGNDNQLLVWN-QHSQ-QPTLRLTEHT----AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd-~~~~-~~~~~~~~h~----~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
++++-. ||.|.+|| .++- .++..+.... ..+..++|+|....++++.. -..++|+++|+.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEeccc
Confidence 887766 89999999 3332 2222222222 34899999999888887764 356889999975
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.0012 Score=59.90 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~l 257 (475)
.++.++..+.+.--|..+|++.-...+ +..|.+-+.- -|++++.|+.+|.+++.++.+|.+...+.... ..-..+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 455556678888889998886544333 3344443333 57789999999999999999998877665321 122345
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
++++.++..|+.|++.+..|.+. ...+.+
T Consensus 102 d~~~glIycgshd~~~yalD~~~-~~cVyk 130 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKT-YGCVYK 130 (354)
T ss_pred cCCCceEEEecCCCcEEEecccc-cceEEe
Confidence 67899999999999999999983 433333
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.38 E-value=0.00054 Score=63.62 Aligned_cols=194 Identities=13% Similarity=0.180 Sum_probs=115.9
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+-...+..++|+|+. .++++....+.|..++. +|+.++.+.-. .+..-.+++ ++.++++.-+++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 344569999999975 46667777888888886 57888877633 345667777 33455555568999999884332
Q ss_pred ccE-----EEe-----cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEEe--------ccccceeEEE
Q 011916 283 DYI-----CKL-----AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---QQPTLRLT--------EHTAAVKAIA 341 (475)
Q Consensus 283 ~~~-----~~~-----~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---~~~~~~~~--------~h~~~v~~l~ 341 (475)
..+ ..+ ..++..+-+++|++.++.|+.+-+..-..||.+.. ...+.... .....+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 211 111 12456799999999888888887776666766653 22221111 1234578899
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG----------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
++|....|++... ....|..+| .+|+.+..+... .+.-.++|.++|+..++ + +.+..++|
T Consensus 178 ~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred EcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9998877888765 899999999 678877766422 36889999999977776 3 56666655
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=0.00081 Score=67.77 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=84.9
Q ss_pred ceeEEEECCCCCcEEEEecC--CCCC----eEEEEECCCCce----eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 336 AVKAIAWSPHQSSLLASGGG--TADR----CIRFWNTSNGHQ----LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~G--s~d~----~I~iwd~~~~~~----~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...++.|+-...+.+.+-.- +.+| ...+|++...+. +..+...+.+.+++++|+...++. |+.||.|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEE
Confidence 34566776644444333210 0122 234566554432 234567899999999999999999 99999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+||...+.. .+..+.-.++.++|+|+|.++++|+.-|.|.+||+.-+...-.
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 999876533 3334556688999999999999999999999999986665443
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.9e-06 Score=82.88 Aligned_cols=210 Identities=14% Similarity=0.057 Sum_probs=149.6
Q ss_pred CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCC--CCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 011916 249 GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRV--SSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQ 324 (475)
Q Consensus 249 ~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~ 324 (475)
.|...|+.+... .+++.+++.||.++.|.-.. .-+.+..+..|...|.+++.+.++.++.+++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 367777776664 68999999999999997652 12345557788899999999999999999887 999999999875
Q ss_pred ceeEEEeccccceeEEEE--CCC-CCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 325 QPTLRLTEHTAAVKAIAW--SPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~--sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
..+..++- ......+.| ++. -..+++.+ -..++.|.++|-....+...+ .|-++|..+.+.+.+..+++ .
T Consensus 87 DminmiKL-~~lPg~a~wv~skGd~~s~IAVs-~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS--i 162 (558)
T KOG0882|consen 87 DMINMIKL-VDLPGFAEWVTSKGDKISLIAVS-LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS--I 162 (558)
T ss_pred chhhhccc-ccCCCceEEecCCCCeeeeEEee-cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee--c
Confidence 54322221 111122233 222 11233333 237899999997655433222 36789999999999999998 7
Q ss_pred cCCCeEEEEECCC------CceEEE---------ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 399 YSQNQIMVWKYPS------MAKVST---------LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 399 ~~dg~I~iwd~~~------~~~~~~---------l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
...|.|.-|..+. .+.... +........++.|+|+|..+.+-+.|..|+++.+.++...+.+.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 7889999998762 111111 122345578899999999999999999999999999987766443
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.8e-05 Score=78.49 Aligned_cols=180 Identities=17% Similarity=0.324 Sum_probs=128.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
.+.++|.+++ +++|+.|+.+|.|++++....- .+...|... .-.|.++++|+.||+|.|-.+-++. ...++
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-EITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCc-cceeE
Confidence 3556666665 6799999999999999965432 444445444 4458999999999999999887433 33333
Q ss_pred cCccCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECC---CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 289 AGHKSEVCGLKWSHD-----DRELASGGNDNQLLVWNQH---SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~-----~~~lasg~~Dg~I~iwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
....++.+++++|+ .+.+++||.-| +.++.-+ ....+ .+....++|.++.|..+ +++-+ .|--
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIAWa---nd~G 180 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIAWA---NDDG 180 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEEEe---cCCC
Confidence 34567999999997 56899999988 7777643 12222 45567899999999744 66654 5777
Q ss_pred EEEEECCCCceeeeecCCC-------CeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 361 IRFWNTSNGHQLNSVDTGS-------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~~~~-------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|++||+.+++.+..+.... -.+.+.|.++.+.++ |. ..+|.|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---GW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---GW-GDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---ec-CCeEEEEEEe
Confidence 9999999999888875332 356788887766555 54 3457777776
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.35 E-value=0.0011 Score=64.59 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=138.5
Q ss_pred CceeEEecCCC--CEEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQ--NVLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+|...=+|.++ .+|.++. ...+++.|+.+++..++.+.. ........++++++.++.......|.-.|+++.+.
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-CCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 44444556654 5666665 457999999999999998742 22233566789888887766667899999999887
Q ss_pred eEEecCCCCceEEEEe--C--CCEEEEEeC----------------------CCcEEEEECCCCCccEEEecCccCCEEE
Q 011916 244 VRTFGGHQTRAGVLAW--N--SRILSSGSR----------------------DRNILQHDLRVSSDYICKLAGHKSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~--~~~l~sgs~----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 297 (475)
...+......+....| + +..++..-. ...|.-.|+. .++ ...+......+..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~-~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGE-RKVVFEDTDWLGH 192 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T---EEEEEEESS-EEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCc-eeEEEecCccccC
Confidence 7777766666655555 2 334332211 1224444554 222 3333334556778
Q ss_pred EEEcC-CCCEEEEEeC---CCc-EEEEECCC-CceeEEEecc--ccceeEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011916 298 LKWSH-DDRELASGGN---DNQ-LLVWNQHS-QQPTLRLTEH--TAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTS 367 (475)
Q Consensus 298 l~~s~-~~~~lasg~~---Dg~-I~iwd~~~-~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~ 367 (475)
+.|+| |..+|+.|-+ +.. -+||-+++ +.....+..+ ...+..=-|.|||..+...+. |..+..|.-+|..
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 89999 4556666543 221 35665542 2222333222 233455569999998776432 3356678889999
Q ss_pred CCceeeeecCCCCeeEEEEcCCCCeEEEEEecC---------------CCeEEEEECCCCceEE--E-------ecCCCc
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS---------------QNQIMVWKYPSMAKVS--T-------LTGHSL 423 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~---------------dg~I~iwd~~~~~~~~--~-------l~~h~~ 423 (475)
+++........ ....+.-+++|++++-= |+. +--|++++...+.... . +.+|..
T Consensus 273 t~~~~~~~~~p-~~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLMEMP-WCSHFMSSPDGKLFVGD-GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEEE--SEEEEEE-TTSSEEEEE-E-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEeCC-ceeeeEEcCCCCEEEec-CCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 88765433222 34456667888877652 221 1146678887655321 1 111111
Q ss_pred -ceEEEEECCCCCEEEE-EeCCCCEEEEecC
Q 011916 424 -RVLYLATSPDGQTIVT-GAGDETLRFWNVF 452 (475)
Q Consensus 424 -~V~~l~~spdg~~l~s-~s~Dg~I~iW~~~ 452 (475)
.=-...|+|||++++- +...|...||-+.
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1245789999997665 5557877777554
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0025 Score=63.76 Aligned_cols=263 Identities=15% Similarity=0.137 Sum_probs=173.1
Q ss_pred EEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCCCceEEEEe--CC-CEEE
Q 011916 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS-RILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~ 265 (475)
+.+++..+........+ ......+...+++..+.+... ...+.+.+................-..++. .+ +.++
T Consensus 13 ~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISL--GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeec--CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 66777666666666543 235667788888865554433 234555554422222211111122233444 33 4666
Q ss_pred EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEeccccceeEEEE
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 342 (475)
....+..|.+.|............+. ....++++++++.+.++.. ++.+.+.|..+.+.+........+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 66667999999976333322222232 5678999999987777655 689999999988887775443344 89999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceee-----eecCCCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEE
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLN-----SVDTGSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-----~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 416 (475)
.|+|..++++-. .++.|.+.|..+..... ..........+.++++|++++++.... ++.+...|..++....
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999998888764 79999999987766663 234455678899999999887753322 2689999998887766
Q ss_pred Ee-cCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 417 TL-TGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 417 ~l-~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
.. .........+..+|+|..+.+... .+.+.+-|.........
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 52 211115667899999999888744 47888888777655443
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.32 E-value=0.0012 Score=68.28 Aligned_cols=233 Identities=9% Similarity=0.096 Sum_probs=140.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCeeeEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTR--EGSYISVGT---------NLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~sp--dg~~la~g~---------~dg~v~iwd~~~~~~~~~ 246 (475)
+.+++++.++.|+-+|.++++..-........ .-..+.-+| .+..+++++ .+|.|..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 66777778999999999999977665542211 000111122 234566664 368899999999998887
Q ss_pred ecCCCC--------------------ceE-EEEeC--CCEEEEEeCCC------------------cEEEEECCCCCccE
Q 011916 247 FGGHQT--------------------RAG-VLAWN--SRILSSGSRDR------------------NILQHDLRVSSDYI 285 (475)
Q Consensus 247 ~~~h~~--------------------~v~-~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~ 285 (475)
+..... .+. ..+.+ +..++.++.++ .|.-+|..+ ++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t-G~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT-GKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-CCEE
Confidence 653211 010 12232 46777777665 688888874 4433
Q ss_pred EEec--CccC--------C-EEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 286 CKLA--GHKS--------E-VCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 286 ~~~~--~h~~--------~-V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
-... .|.. . +..+. .-++. .++.++.+|.++..|.++++.+...... ...++..| ..+++
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 3322 1210 0 11111 11333 5778888999999999999988765432 12234444 22333
Q ss_pred Eec---------------CCCCCeEEEEECCCCceeeeecCC---------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 352 SGG---------------GTADRCIRFWNTSNGHQLNSVDTG---------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 352 sg~---------------Gs~d~~I~iwd~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
... ...++.+.-.|+.+|+.+...... .....-...-.+..|++ ++.+|.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCeEEEE
Confidence 110 114688999999999998887654 11111111124566777 7789999999
Q ss_pred ECCCCceEEEecC
Q 011916 408 KYPSMAKVSTLTG 420 (475)
Q Consensus 408 d~~~~~~~~~l~~ 420 (475)
|..+++.+.+.+-
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999888764
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=6e-05 Score=77.98 Aligned_cols=264 Identities=14% Similarity=0.206 Sum_probs=156.8
Q ss_pred ceeEEecCCC-CEEEEEc-----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 170 YLNLVDWSSQ-NVLAVGL-----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.....+|+|. -++|++. +|.|.||- ++|+...-. .-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3455789986 5776654 68888884 455532222 2234567899999999999999999999999888777
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE-----------------EEecCc--------cCCE-
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI-----------------CKLAGH--------KSEV- 295 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~-----------------~~~~~h--------~~~V- 295 (475)
-.....|...|..+.| +|..++++..-|.+.+|.....++.. ..+... +..|
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 7777789999999999 47999999999999999876332211 011000 0000
Q ss_pred ---EEE----EE-------------cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEe--
Q 011916 296 ---CGL----KW-------------SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG-- 353 (475)
Q Consensus 296 ---~~l----~~-------------s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg-- 353 (475)
.++ -| .|+|..++.++.+|+|+-.|-.. +.....+.. +. ..+-|.+....+++.-
T Consensus 174 gDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~ 250 (1416)
T KOG3617|consen 174 GDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEF 250 (1416)
T ss_pred CchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeee
Confidence 000 11 34677788888888888877432 222222110 00 1112222111111110
Q ss_pred ----------c---------------CCCCCeEEEEECC---CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 354 ----------G---------------GTADRCIRFWNTS---NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 354 ----------~---------------Gs~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
. |...|.|.+=... .......+..+..+.+++++..+..|.. |...|.+.
T Consensus 251 lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a--gt~~gnv~ 328 (1416)
T KOG3617|consen 251 LRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA--GTKEGNVT 328 (1416)
T ss_pred ceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe--cccCCcEE
Confidence 0 0011111111100 0011122235667999999999988888 99999999
Q ss_pred EEEC-CC------CceEEEecC---CCcceEEEEECCCCCEEEEEe
Q 011916 406 VWKY-PS------MAKVSTLTG---HSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 406 iwd~-~~------~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s 441 (475)
+|.- +. +.-...+.+ ..+.|..+.|.|-...++.-+
T Consensus 329 ~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 329 IWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 9963 22 122344443 446799999998655554443
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=0.0002 Score=77.17 Aligned_cols=202 Identities=13% Similarity=0.164 Sum_probs=134.1
Q ss_pred CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CC-
Q 011916 251 QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ----HS- 323 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~----~~- 323 (475)
...|.++.| ++..++.+..+|.|.+.|..+. .......-...|.+++||||++.++..+.+++|.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 357888888 5788999999999999987632 23333445677999999999999999988877766432 11
Q ss_pred ------------------CceeEEEeccc---------------------cceeEEEECCCCCcEEEEec--CCCCCeEE
Q 011916 324 ------------------QQPTLRLTEHT---------------------AAVKAIAWSPHQSSLLASGG--GTADRCIR 362 (475)
Q Consensus 324 ------------------~~~~~~~~~h~---------------------~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~ 362 (475)
|+....|.+.. +.=..|.|--||.+++++.- .+..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 11111222111 11245899999997766432 11238999
Q ss_pred EEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCc---eEEEecCCCcceEEEEECCCCCEE
Q 011916 363 FWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMA---KVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 363 iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
+||.. |..-..- ...+.-.+++|-|.|..+++.... +++.|.+|.-...+ -...+......|..++|+.++..|
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 99977 4433222 233456789999999999886432 45568888854322 222223334458999999999999
Q ss_pred EE---EeCCCCEEEEecCCCC
Q 011916 438 VT---GAGDETLRFWNVFPSL 455 (475)
Q Consensus 438 ~s---~s~Dg~I~iW~~~~~~ 455 (475)
++ ......|++|-+.+..
T Consensus 305 Av~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeecccccceEEEEEecCeE
Confidence 88 5555569999886543
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=6.8e-05 Score=77.59 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=85.1
Q ss_pred cEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCcc
Q 011916 211 SVCSVQWTREGSYISVGTN----LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~----dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.-+-..|+|...+||+++. .|.|.||- ++|++-+... ..-.+++++|++ -.|+.|-.-|.+.+|... ..+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-TTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecC-Ccee
Confidence 3344579999999999875 48898885 5666544332 233467799987 467888889999999886 4444
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
-.....|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55566799999999999999999999999999999876
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00017 Score=71.88 Aligned_cols=238 Identities=16% Similarity=0.207 Sum_probs=135.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-------------------------------------------eEEe
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR-------------------------------------------VRTF 247 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~-------------------------------------------~~~~ 247 (475)
.|+.+.|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999986432110 0112
Q ss_pred cCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEE--ecC------ccCCEEEEEEcC-----CC---CEEEEE
Q 011916 248 GGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICK--LAG------HKSEVCGLKWSH-----DD---RELASG 310 (475)
Q Consensus 248 ~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~------h~~~V~~l~~s~-----~~---~~lasg 310 (475)
....+.|++++.+ =.+++.|..+|.+.|.|+| ....+.. +.. ....|+++.|+- |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346788888885 4899999999999999998 4443333 112 234688888863 33 378899
Q ss_pred eCCCcEEEEECCC---Ccee----EEEeccccceeEEE-ECCC-C-------------------CcEEEEecCCCCCeEE
Q 011916 311 GNDNQLLVWNQHS---QQPT----LRLTEHTAAVKAIA-WSPH-Q-------------------SSLLASGGGTADRCIR 362 (475)
Q Consensus 311 ~~Dg~I~iwd~~~---~~~~----~~~~~h~~~v~~l~-~sp~-~-------------------~~ll~sg~Gs~d~~I~ 362 (475)
.+.|.+.+|.+.- +... .....+.+.|..|. ++.+ | +.+++.. .+..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceE
Confidence 9999999998751 2111 11123556665554 3211 1 1233333 488999
Q ss_pred EEECCCCceeeeecCCC-CeeEEEEc-----CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC----cceEEEEECC
Q 011916 363 FWNTSNGHQLNSVDTGS-QVCNLAWS-----KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS----LRVLYLATSP 432 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~-~v~~l~~s-----~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~sp 432 (475)
++...+.+......... ....+.+- ..+..|++ -..+|.|++|.++..+.+..+.-.. ..+....+++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 99998888776654221 22234442 24555555 5689999999999999988876532 3455678899
Q ss_pred CCCEEEEEeCCCCEEEEecCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+|+.++-.+.. .+.++.+....
T Consensus 317 ~Gdi~~~~gps-E~~l~sv~~~~ 338 (395)
T PF08596_consen 317 NGDIFYWTGPS-EIQLFSVWGEG 338 (395)
T ss_dssp TS-EEEE-SSS-EEEEEEEES--
T ss_pred CCCEEEEeCcc-cEEEEEEEccC
Confidence 99988777554 45555554443
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.22 E-value=0.00093 Score=67.59 Aligned_cols=218 Identities=10% Similarity=0.120 Sum_probs=120.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEE-ECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQH-DLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iw-d~~~~~~~~~ 286 (475)
......+.++|+|+++++ +.+|...|+.....+.... +....++|. .+.+++-..+++|.|+ ++. .....
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~--~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFK--NEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTE--E-TT-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCc--cccce
Confidence 345779999999999999 5568888988544443322 334556774 4677887778999996 443 12211
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+... ..+..|-. |.+|+..+.+ .|.+||+.+++.+..+... +|..+.|++++..++..+ +..+.+++.
T Consensus 104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il~~ 172 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYILKY 172 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE
T ss_pred EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEEEe
Confidence 22111 12444432 8888887764 8999999999999888643 489999999999777763 667888775
Q ss_pred CCC-----------ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 367 SNG-----------HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 367 ~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
... ..+..+. ....|.+.+|..+ .++-+ ..+.|+. +..|+. ..+..-..++.=+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt---T~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT---TSNHLKY--LVNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEE-EEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE---cCCeEEE--EEcCCc-ceEEEcCCceEEEEEEccC
Confidence 433 0223332 3678899999877 33332 2336665 333332 2222223455556677777
Q ss_pred CEEEEEeCCCCEEEEecCC
Q 011916 435 QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.....|+.|..+.++.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TEEEEE-TT--EEEEE--H
T ss_pred CEEEEEECCCCEEEEEECH
Confidence 7888888999998887764
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.3e-06 Score=90.16 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=143.5
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC--cE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN--QL 316 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg--~I 316 (475)
.+..+++..|....+|++|. .+.|+.|+..|.|+++++. .+........|...|+-+.=+.||..+++.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccCchH
Confidence 34456677888999999996 4899999999999999998 6677778889999999999999998777665433 46
Q ss_pred EEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCCCeeEEEEcCCC
Q 011916 317 LVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGSQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~~~ 390 (475)
.+|++.. +.+.+.|.+ -.++.|+..-..-+. |+......+||+.|+..+.++- ....-....|+|+.
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 7899874 445555543 357788876443333 3466789999999998877642 12334678899998
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
..++- || .+||.+..+.+..+...+.. ..=.|+|.|..++.-++ |||+.+-....
T Consensus 1243 ~LIln-----dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1243 TLILN-----DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLH 1297 (1516)
T ss_pred ceEee-----Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHh
Confidence 87764 44 47999888777666544422 22358999998887764 78887655443
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.00073 Score=68.37 Aligned_cols=220 Identities=13% Similarity=0.158 Sum_probs=118.1
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.++|...+.++|+ +.++++.+|.-.|+.......... +.-...+|.++++ +|+-..+++|.|+.--+.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc------CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 4566778999986 789999999999998554443332 2334678998555 6666668899997433333322
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ- 324 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~- 324 (475)
.+... ..+..+-. |.+|...+.+ .|.+||+. .+..+..+... .|..+.|+++|+++|..+.+ .++|++....
T Consensus 104 ~i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~-~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWE-TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp ----S-S-EEEEE--SSSEEEEETT-EEEEE-TT-T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred EEcCC-cccceEEc-CcEEEEECCC-CEEEEEhh-HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 33311 12333332 7777777655 89999998 56777777643 38999999999999999865 6788775433
Q ss_pred ----------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 325 ----------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 325 ----------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
.....+......|.+..|..+ .++.+. ...|+. +..|+.-..-....++.-+...+..+.++
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 123333333678999999876 344442 236666 33444332222344566666666656666
Q ss_pred EEEecCCCeEEEEECC
Q 011916 395 STHGYSQNQIMVWKYP 410 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~ 410 (475)
+ ...++.|..+.+.
T Consensus 249 ~--~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 L--IDRDGNVISYELD 262 (443)
T ss_dssp E--E-TT--EEEEE--
T ss_pred E--EECCCCEEEEEEC
Confidence 6 4566666666543
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0034 Score=59.78 Aligned_cols=224 Identities=17% Similarity=0.171 Sum_probs=133.6
Q ss_pred CCCEEEEEcCCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe---------
Q 011916 178 SQNVLAVGLGTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF--------- 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~--------- 247 (475)
.+.++.++.+| |++++. ......+... ...|..+...++-+.|++-+. +.+.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee---cceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccccc
Confidence 34555555555 999999 3344444443 334999999998777666554 99999998754333311
Q ss_pred -----cCCCCceEEEE----eCCCEEEEEeCCCcEEEEECCCCC----ccEEEecCccCCEEEEEEcCCCCEEEEEeCCC
Q 011916 248 -----GGHQTRAGVLA----WNSRILSSGSRDRNILQHDLRVSS----DYICKLAGHKSEVCGLKWSHDDRELASGGNDN 314 (475)
Q Consensus 248 -----~~h~~~v~~l~----~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg 314 (475)
-.....+..++ ..+...+.....+.|.+|...... ...+.+. -...+.+++|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 11233445555 133344444445589988887431 2223332 34778999998 5578887754
Q ss_pred cEEEEECCCCceeEEEecc------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCC
Q 011916 315 QLLVWNQHSQQPTLRLTEH------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTGSQ 380 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~~~ 380 (475)
...+.|+.++.....+... ..++..+.. +++..|++ .|..-.+.|. .|+... .+.-...
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-----~~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-----YDNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-----ecceEEEEcC-CCCcCcccEEEcCCc
Confidence 5888999876654333211 112333333 34454444 3555555554 444433 4444556
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
+..+++. ..+|++. .++.|.||++.+++.++.+....
T Consensus 231 p~~~~~~--~pyli~~---~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAF---SSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEEE--CCEEEEE---CCCEEEEEECcCCcEEEEEECCC
Confidence 6667664 4577763 45779999999999988887544
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.17 E-value=0.001 Score=64.95 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=128.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC---C----CCEEEEEeC---------C-CeEEEEECCCC----eeeEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR---E----GSYISVGTN---------L-GQVQVWDGTQC----KRVRT 246 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp---d----g~~la~g~~---------d-g~v~iwd~~~~----~~~~~ 246 (475)
+.|+|.|..+.+.+..+.+...+.+.+++... + ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 47899999999988888887777777766433 2 478888865 2 89999999884 22222
Q ss_pred e--cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 F--GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~--~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+ ....+.|++++--+..|+++. ++.|.+|++........ ........+.++... +++++.|.....|.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2 245788999987444444443 48999999985551222 222233366776665 55999999888888775443
Q ss_pred -CceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cc----eeeeecCCCCeeEE---EE
Q 011916 324 -QQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------GH----QLNSVDTGSQVCNL---AW 386 (475)
Q Consensus 324 -~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~----~~~~~~~~~~v~~l---~~ 386 (475)
...+..+. .....+.++.+-+++..+++ + +.+|.+.++.... +. ....+..+..|+++ .+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~-~--D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIV-G--DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEE-E--ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEE-E--cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 22222222 23556888889866664444 3 3899999988652 22 23445567778887 55
Q ss_pred cC--CCCe------EEEEEecCCCeEEE
Q 011916 387 SK--NVNE------LVSTHGYSQNQIMV 406 (475)
Q Consensus 387 s~--~~~~------l~~~~g~~dg~I~i 406 (475)
.| .+.. ++. ++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred eecCCCCcccccceEEE--EecCCEEEE
Confidence 55 2222 444 667888773
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.10 E-value=0.0013 Score=65.11 Aligned_cols=228 Identities=15% Similarity=0.201 Sum_probs=127.4
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCC----------------CcEEEEEEcCCCCEEEEEeCC-C
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPG----------------DSVCSVQWTREGSYISVGTNL-G 231 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~----------------~~V~~v~~spdg~~la~g~~d-g 231 (475)
.+....|||+ +.++...++.|++++..++...++..-+.. +.-..+-|||||++||....| .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 3455899997 788888999999999988876666542311 123568899999999986543 2
Q ss_pred e-----------------------------------EEEEECCCCeeeEE--e---cCCCCceEEEEe--CCCEEEEE--
Q 011916 232 Q-----------------------------------VQVWDGTQCKRVRT--F---GGHQTRAGVLAW--NSRILSSG-- 267 (475)
Q Consensus 232 ~-----------------------------------v~iwd~~~~~~~~~--~---~~h~~~v~~l~~--~~~~l~sg-- 267 (475)
. +.|+|+.+++.... . .....-+..+.| ++..|+..
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 2 22334433332110 0 122334566677 33323332
Q ss_pred eCCC---cEEEEECCCCCccEEEecCccCC---EEEEEEc-CCCC-EEEEEeCCC--cEEEEECCCCceeEEEeccccce
Q 011916 268 SRDR---NILQHDLRVSSDYICKLAGHKSE---VCGLKWS-HDDR-ELASGGNDN--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 268 s~dg---~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s-~~~~-~lasg~~Dg--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
.++. .+.++|.......+......... -..+.|. +++. +|.....|| .|++++...+. ...+....-.|
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V 282 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEV 282 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-E
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceee
Confidence 3332 35556665322222211112222 2244554 5555 444555666 46666666665 34555556667
Q ss_pred eE-EEECCCCCcEEEEecCC--CCCeEEEEECCCCceeeeecCCCCe-eEEEEcCCCCeEEEEEe
Q 011916 338 KA-IAWSPHQSSLLASGGGT--ADRCIRFWNTSNGHQLNSVDTGSQV-CNLAWSKNVNELVSTHG 398 (475)
Q Consensus 338 ~~-l~~sp~~~~ll~sg~Gs--~d~~I~iwd~~~~~~~~~~~~~~~v-~~l~~s~~~~~l~~~~g 398 (475)
.. +.|.+++..++.++.+. ....|+..++..+..+..+...... ..+.|+|++++++..+.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 44 78899999888887631 2456777777734455555544444 49999999999998643
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.10 E-value=0.01 Score=60.28 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=131.3
Q ss_pred EEEEEcCCCCEEEEEeC-CC----eEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC-----------CcEE
Q 011916 213 CSVQWTREGSYISVGTN-LG----QVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD-----------RNIL 274 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-----------g~I~ 274 (475)
....++|+|++||.+-. .| .|+++|+++++.+...-. ......+.|. ++.|+....+ ..|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 36788999999998633 33 599999999977653211 1112238893 4555444322 2377
Q ss_pred EEECCCCCcc-EEEecCccC-C-EEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC----ceeEEEeccccce-eEEEE
Q 011916 275 QHDLRVSSDY-ICKLAGHKS-E-VCGLKWSHDDRELASGGN---D-NQLLVWNQHSQ----QPTLRLTEHTAAV-KAIAW 342 (475)
Q Consensus 275 iwd~~~~~~~-~~~~~~h~~-~-V~~l~~s~~~~~lasg~~---D-g~I~iwd~~~~----~~~~~~~~h~~~v-~~l~~ 342 (475)
.|.+.+.... ...+..... . ...+..++|+++|+.... + ..+++.|+..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888654433 333433332 2 678899999998776432 2 45888888874 2233333333333 33433
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCce---e-eeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEE
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQ---L-NSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVS 416 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~-~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~ 416 (475)
. .+..++.+..+...+.|...++.+... . ..+.+...+.-..+...+++|++. ...++ .|+++++..+....
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEEe
Confidence 3 445555555445668888888887763 2 223344433333444455566653 23333 68899998344444
Q ss_pred Eec-CCCcceEEEEECCCCCEEE-EE-eC--CCCEEEEecCCCCC
Q 011916 417 TLT-GHSLRVLYLATSPDGQTIV-TG-AG--DETLRFWNVFPSLK 456 (475)
Q Consensus 417 ~l~-~h~~~V~~l~~spdg~~l~-s~-s~--Dg~I~iW~~~~~~~ 456 (475)
.+. .-.+.|..+...+++..+. +. +. -+++.-||+.+++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 433 2344566666556555433 22 22 35677777776653
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.0002 Score=72.13 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=115.4
Q ss_pred cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG---ND-NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~---~D-g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
.+.+-|.. +.....+..-...+..-+|+|++..++... .. ..++++|+.+++...... ..+.-...+|+|||+
T Consensus 174 ~l~~~D~d--g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD--GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC--CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444443 334444555556677788999998766542 22 469999999887654443 344456679999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcce
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
.|+.+......-.|+++|+.++.........+.-+.-.|+|+|+.++.+ .+..| +|.+++.+.... ..++.....-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~-Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT-SDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE-eCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 9999887443445777888887754433333444578899999999986 34455 466666665544 3333333333
Q ss_pred EEEEECCCCCEEEEEeC-CCC--EEEEecCCCC
Q 011916 426 LYLATSPDGQTIVTGAG-DET--LRFWNVFPSL 455 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~-Dg~--I~iW~~~~~~ 455 (475)
..-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 37789999999998764 344 5555554444
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00065 Score=65.04 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=136.9
Q ss_pred CCceeEEecCCC--C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~ 243 (475)
...+..+++||. . +..++.++.|.|.|+++..++..+.. ...+.+++|.-|. .+|..|..+|.|.|||+...+-
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 345677899985 2 45556699999999999998888863 3889999998865 5778888899999999875422
Q ss_pred -eEEecC--CCCceEEEEe--------CCCEEEEEeCCCcEEEEECCCCCc-cEEEec-CccCCEEEEEEcCCCCE-EEE
Q 011916 244 -VRTFGG--HQTRAGVLAW--------NSRILSSGSRDRNILQHDLRVSSD-YICKLA-GHKSEVCGLKWSHDDRE-LAS 309 (475)
Q Consensus 244 -~~~~~~--h~~~v~~l~~--------~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~~V~~l~~s~~~~~-las 309 (475)
+..+.+ ...+|..++. .+.+|+....+ +..|.+..... ....+. +..+...++.+.+-.+. |++
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 222221 2234444443 23444444432 44555543221 111111 12334445555553343 333
Q ss_pred EeCCC------cEE-EEECCCCceeEEEec-c-cc------ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 310 GGNDN------QLL-VWNQHSQQPTLRLTE-H-TA------AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 310 g~~Dg------~I~-iwd~~~~~~~~~~~~-h-~~------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.-.+- .|. --|...|.++...+. + .. .-.++.-.++..+++..|+ ..+.+.+||..+++.+..
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELILQDPHSFEVVQT 426 (463)
T ss_pred ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEEeccchhheeee
Confidence 22210 011 112233333322211 1 00 1122333456666666654 889999999999999999
Q ss_pred ecCCCCeeEEEEcC-C-CCeEEEEEecCCCeEEEEECC
Q 011916 375 VDTGSQVCNLAWSK-N-VNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 375 ~~~~~~v~~l~~s~-~-~~~l~~~~g~~dg~I~iwd~~ 410 (475)
+....+|..++... + +.+|++ -.|..++||..+
T Consensus 427 l~~~epv~Dicp~~~n~~syLa~---LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 427 LALSEPVLDICPNDTNGSSYLAL---LTDDRVHIYKNE 461 (463)
T ss_pred cccCcceeecceeecCCcchhhh---eecceEEEEecC
Confidence 99888888877654 2 335554 357888888754
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=1.3e-06 Score=87.40 Aligned_cols=195 Identities=21% Similarity=0.355 Sum_probs=127.6
Q ss_pred CceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc-EEEecCccCCEEEEEEcC-CCCEEEEEe----CCCcEEEEEC
Q 011916 252 TRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY-ICKLAGHKSEVCGLKWSH-DDRELASGG----NDNQLLVWNQ 321 (475)
Q Consensus 252 ~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~-~~~~lasg~----~Dg~I~iwd~ 321 (475)
..+.|+++. ..++++|..+|.|.+-.++..... .....+|....++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666662 358899999999999988754333 345667888899999998 667888773 4678999999
Q ss_pred CCC--cee--EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCCCeeEEEEcC-CCCeEE
Q 011916 322 HSQ--QPT--LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVDTGSQVCNLAWSK-NVNELV 394 (475)
Q Consensus 322 ~~~--~~~--~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~-~~~~l~ 394 (475)
.++ .+. ..|.. -......++|-.+.+ ++.+ |...+.+.++|++.. .....+. ...+..+...| .+++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvla--Gm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLA--GMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcc-hhhc--ccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCcee
Confidence 876 221 12222 334456889997777 4544 448889999998732 2222222 12356677778 666766
Q ss_pred EEEecCCCeEEEEE-CCCCce-EEEecCC----CcceEEEEECCCCC-EEEEEeC-CCCEEEEecCC
Q 011916 395 STHGYSQNQIMVWK-YPSMAK-VSTLTGH----SLRVLYLATSPDGQ-TIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 395 ~~~g~~dg~I~iwd-~~~~~~-~~~l~~h----~~~V~~l~~spdg~-~l~s~s~-Dg~I~iW~~~~ 453 (475)
. +.+|.|.+|| ..+.+. +..+... ...+..++|.|... .+++... .++|+++++..
T Consensus 213 s---~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S---NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c---cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5 4699999999 433322 2222211 23489999999532 4555555 47899999864
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.04 E-value=0.019 Score=60.01 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=157.6
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE----------EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS----------VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~----------v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-.|..+|+..=..+......+.. +++ .+..+++++.+|.|.-.|.++++.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 455556667888888998888665544321111111 122 23567888899999999999999987765
Q ss_pred CC--CC--ceEE-EEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCc--------------------------
Q 011916 249 GH--QT--RAGV-LAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGH-------------------------- 291 (475)
Q Consensus 249 ~h--~~--~v~~-l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h-------------------------- 291 (475)
.. .. .+.+ -...+..++.+. .+|.|..+|.++ ++.+-....-
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT-GKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC-CceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 21 11 1111 111233455543 268898888874 3332221110
Q ss_pred -----cCCE-EEEEEcCCCCEEEEEeC------------CC----cEEEEECCCCceeEEEeccccc---------eeEE
Q 011916 292 -----KSEV-CGLKWSHDDRELASGGN------------DN----QLLVWNQHSQQPTLRLTEHTAA---------VKAI 340 (475)
Q Consensus 292 -----~~~V-~~l~~s~~~~~lasg~~------------Dg----~I~iwd~~~~~~~~~~~~h~~~---------v~~l 340 (475)
...+ ..+.+.++..++..+.. |+ .|.-.|+++++....++..... ..-+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0011 13355665556665541 11 6778899999987766542211 1222
Q ss_pred EECCCCC--cEEEEecCCCCCeEEEEECCCCceeeee------------c--CCCCe-----------------------
Q 011916 341 AWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSV------------D--TGSQV----------------------- 381 (475)
Q Consensus 341 ~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~------------~--~~~~v----------------------- 381 (475)
....+|+ .+++.+. .+|.+++.|-.+|+.+... . ...++
T Consensus 307 d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 307 DLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 2334555 4565544 9999999999999886221 0 00000
Q ss_pred -----eEEEEcCCCCeEEEEEec-------------------------------CCCeEEEEECCCCceEEEecCCCcce
Q 011916 382 -----CNLAWSKNVNELVSTHGY-------------------------------SQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 382 -----~~l~~s~~~~~l~~~~g~-------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
..++++|+...+++.... .-|.|.-+|+.+++.+-..+......
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 114566666655542211 12457778888887776655322111
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
-.. ..-.+..++.++.||.++.+|..+++......
T Consensus 465 ~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 465 GGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred Ccc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 111 11245577778889999999999998776543
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.013 Score=59.22 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=105.3
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEeCCC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAWNSR 262 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~ 262 (475)
.|.||+.....+.. +.... +.|.++.|+.+. .|++-..||.+++||+.... .+....-....+....+.+.
T Consensus 62 ~I~iys~sG~ll~~-i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS-IPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCCEeEE-EEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 58888876665444 44444 899999999755 56667788999999986333 11111112222333232212
Q ss_pred EEEEEeCCCcEEEEECCCCCccEEEec---C-----ccCCE-E-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 263 ILSSGSRDRNILQHDLRVSSDYICKLA---G-----HKSEV-C-GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~~~~~~~~---~-----h~~~V-~-~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
=++.-..++.+.+..--........+. . |.... . -..++.+....+....++.+.+.+-...+. + .
T Consensus 139 GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~ 214 (410)
T PF04841_consen 139 GIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-D 214 (410)
T ss_pred CEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-c
Confidence 233333445544432211111111111 1 00000 0 022333444444444445555444322111 1 1
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCCeE
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNEL 393 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l 393 (475)
..+++..|+.||++++++... .+|.+.+.+..-.+.+..++.+ .....+.|.-+...+
T Consensus 215 ~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 246899999999999776653 6899999987777777777655 677888887654333
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0011 Score=69.38 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=128.1
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC--
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-VCSVQWTREGSYISVGTNLG-----QVQVWDGTQC-- 241 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~-- 241 (475)
-+.|++-+...++.++.+|.|.+.+-.-... .-+. .+... |..+....+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~-~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLI-RGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceee-ehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3455554445677777799998887433221 2222 22233 55554444446777766654 4899998642
Q ss_pred ----eee---EEec----CCCCceEEEEeC--CCEEEEEeCCCcEEEEECC---CCCccEEEecCccCCEEEEEEcCCCC
Q 011916 242 ----KRV---RTFG----GHQTRAGVLAWN--SRILSSGSRDRNILQHDLR---VSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 242 ----~~~---~~~~----~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.++ +.+. ....++.+++.+ -..+++|-.+|.|..+.-. ..+...........+|+++.+..++.
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 233 2221 124466777774 4789999999999988432 12222333344567899999999888
Q ss_pred EEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 306 ELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
.++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++ +..+.+|+.........+..+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeecCC
Confidence 733333346899999985543 344777888999999998766566653 688999998766555555433
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.01 E-value=0.00049 Score=73.43 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=105.4
Q ss_pred CEEEEE-eCCCeEEEEECCCCeeeEEecCCCCc-eEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEec---
Q 011916 222 SYISVG-TNLGQVQVWDGTQCKRVRTFGGHQTR-AGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLA--- 289 (475)
Q Consensus 222 ~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--- 289 (475)
++|+.. .....|+-.|++.|+.+..+..|... |..++.+ +...+.|-.+..+..||.|..+..+....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444443 34578999999999999999977754 7777763 35667888899999999997653322211
Q ss_pred -CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 290 -GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.......|++-..+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++++ +..|.++++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEE
Confidence 234567788877776 999999999999999543333334556678999999999999999985 788888886
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=0.0062 Score=55.38 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=95.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
..++++|+..+.+.--|..+|+.+..-. -..++-+-+. -|++++.|+..|.+++.+..+ +.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 4678889999999999999988776532 2233333322 578899999999999999984 434443332222112334
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCC
Q 011916 300 WSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 300 ~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
..+++..+..|+.|+..+..|.++..++.+.+...+...+-+..| ++. |+++. ..|.+.--+..++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~---t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAI---TAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEe---ccceEEEEccCCC
Confidence 567899999999999999999999999988765555555556666 444 44432 3454444444443
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0001 Score=75.15 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=92.1
Q ss_pred eEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---E--
Q 011916 254 AGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---L-- 328 (475)
Q Consensus 254 v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~-- 328 (475)
.+|++-++.+++.|+.-|.+.+|+-...........+-.+.++.+..|++..++|.|+..|.|.++-+....+- +
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 35555567888888888888888776444444444445566788889999999999999999999988764321 1
Q ss_pred EE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-----ceeeeecCCCCeeEEEEc
Q 011916 329 RL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-----HQLNSVDTGSQVCNLAWS 387 (475)
Q Consensus 329 ~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-----~~~~~~~~~~~v~~l~~s 387 (475)
.. ..|...|++++|++++..++. |...|+|..-.+.+. .....+...+.|..+...
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ys---GD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYS---GDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccccCCceEEEEEecccccEEee---cCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 127889999999999997776 668899998887762 111222345666666554
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.00016 Score=72.74 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=70.4
Q ss_pred EEEEECCCCcEE--EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEE
Q 011916 190 VYLWTASNSKVT--RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~--~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 265 (475)
-.+|+...+++. ....+.....|.+.+++|+.+.|+.|+.||+|.+||...+... +....-..+.++|+ |.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 456666665443 3344467889999999999999999999999999998765332 33445667889995 67999
Q ss_pred EEeCCCcEEEEECCCCC
Q 011916 266 SGSRDRNILQHDLRVSS 282 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~ 282 (475)
+|+..|.+.+||+....
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 99999999999997443
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.026 Score=56.50 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=147.4
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeCCCEEEEEeC---CCcEEEEECCCCCcc
Q 011916 210 DSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWNSRILSSGSR---DRNILQHDLRVSSDY 284 (475)
Q Consensus 210 ~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~l~sgs~---dg~I~iwd~~~~~~~ 284 (475)
..-..++.++.+..+. ....++.|.+.|..+.+...... +....-..+.+++..+..+.. ++++.+.|-.. ...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeE
Confidence 3445778888887544 44456899999988777776655 332233333345655555544 68888888773 444
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeE-E---EeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQPTL-R---LTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~~~-~---~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
......-..+ ..+++.|+|+.++... .++.|.+.|........ . ...-......+.+.|++.++++...++.++
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 4444333334 8999999999777665 67899999977655442 1 011223347899999999888876544457
Q ss_pred eEEEEECCCCceeeee-cCCC-CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc---ceEEEEECC
Q 011916 360 CIRFWNTSNGHQLNSV-DTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL---RVLYLATSP 432 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~-~~~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp 432 (475)
.+...|..++...... .... ....+..+|+|+.+.+... ..+.+.+.|..+............ .+..+++.+
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999999998877762 2222 6788999999999999633 468899999988877766554332 244455544
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.0097 Score=60.10 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=101.7
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCC-----ccEEEecCccCCEEEEEEcCCCC
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSS-----DYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.|+||+. .|+.+..+.-..+.+.++.|. ...|++...||.++++|+.... ..+....-....+....+..+|-
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 4777774 355555554333899999995 5788889999999999996222 00111111112222333333552
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEEecccccee---------E-EEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 306 ELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVK---------A-IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~---------~-l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.++ ..++.+++..--... ....+..-..... . ..++.+....+... .++.+.+.+-... ..
T Consensus 141 vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~---~~ 212 (410)
T PF04841_consen 141 VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSF---KQ 212 (410)
T ss_pred EEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEcccc---cc
Confidence 333 334445444322211 1111111000000 0 22333333222221 3444553332221 11
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCC
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQ 435 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~ 435 (475)
+...+++..++.||+++.++.. ..+|.+.+....-.+.+.++... ......|.|.-+..
T Consensus 213 i~~~~~i~~iavSpng~~iAl~--t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALF--TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEE--ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 3345789999999999999984 46789988887666666666543 34567777766544
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.89 E-value=0.023 Score=59.34 Aligned_cols=241 Identities=12% Similarity=0.125 Sum_probs=137.2
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEe
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~ 247 (475)
..+.++.++.++.|+-.|..+|+..-....... ..+++--.--++ .++++.. +|.|..+|.++++.+..+
T Consensus 119 ~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 345677778899999999999997655443211 112111111134 4555543 689999999999988765
Q ss_pred cCCCC-------------------------------ceE-EEEeCC--CEEEEEeCC-----C-----------cEEEEE
Q 011916 248 GGHQT-------------------------------RAG-VLAWNS--RILSSGSRD-----R-----------NILQHD 277 (475)
Q Consensus 248 ~~h~~-------------------------------~v~-~l~~~~--~~l~sgs~d-----g-----------~I~iwd 277 (475)
..-.. .+. .+++|+ .+++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 42110 111 123342 455555422 2 455566
Q ss_pred CCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEE--------E----ecc
Q 011916 278 LRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLR--------L----TEH 333 (475)
Q Consensus 278 ~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~--------~----~~h 333 (475)
++ .++..-.++. |. ....-+.+..+|+ .++.+..+|.+++.|.++++++.. + ...
T Consensus 278 ~~-TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 278 PD-TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred cc-cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 66 3333332222 21 1112223334665 788899999999999999987521 1 000
Q ss_pred cc-ce----------------------------eEEEECCCCCcEEEEecC-----------------------------
Q 011916 334 TA-AV----------------------------KAIAWSPHQSSLLASGGG----------------------------- 355 (475)
Q Consensus 334 ~~-~v----------------------------~~l~~sp~~~~ll~sg~G----------------------------- 355 (475)
.. ++ ..++++|+...+++-..-
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 00 00 125566655533332110
Q ss_pred -CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC
Q 011916 356 -TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421 (475)
Q Consensus 356 -s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 421 (475)
..-+.|.-+|+.+|+.+.......+...-.....+..+++ +..+|.++.+|..+++.+...+-.
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence 0125688899999988887765443222222234555555 778999999999999999887643
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.0019 Score=69.07 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=96.4
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC--eeeEE-ec--CCCCceEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGTQC--KRVRT-FG--GHQTRAGV 256 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~~~--~~~~~-~~--~h~~~v~~ 256 (475)
.+.|+-.|++.|+++..+.......|..++=.. +....++|-.+..+..||..-. +++.. .. .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 578999999999999999876555565553211 2345677888889999997643 23321 11 23345667
Q ss_pred EEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 257 LAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 257 l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
++-. ..+||+|+.+|.|++||-- +......+.+-..+|.+|..+.||++++..+. ..|.+++.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 7775 4799999999999999943 44445557777899999999999999887765 57777775
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.76 E-value=0.023 Score=52.86 Aligned_cols=196 Identities=13% Similarity=0.233 Sum_probs=112.3
Q ss_pred EecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+-...+..++|++ .++++....+.|..++.. ++.+..+.-. .+..-+|++..++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4556666799999963 467777778888777764 5566555433 367889999888877777666899999988
Q ss_pred CCCc------eeEEEe-----ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC---Cceeeee-----c----CC
Q 011916 322 HSQQ------PTLRLT-----EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN---GHQLNSV-----D----TG 378 (475)
Q Consensus 322 ~~~~------~~~~~~-----~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~---~~~~~~~-----~----~~ 378 (475)
.... ....+. .+...+..++|.|.+..|+++- +..-..+|.+.. ...+... . .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 4321 111221 2445689999999988788764 455555555543 2222211 1 23
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC---------cceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---------LRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
..+..+.++|....|++. +.....|..+| .+++.+..+.-.. ...-+|+|.++|.+.++ ++-...++|
T Consensus 171 ~d~S~l~~~p~t~~lliL-S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLIL-SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEE-ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEE-ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 458889999988777776 66788999999 6676655443211 34688999999965554 465555444
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.74 E-value=0.021 Score=54.24 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=122.5
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEE--------
Q 011916 219 REGSYISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICK-------- 287 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-------- 287 (475)
..++.|++|+.+| |.+++.. ..+..+... ...|..+..-+ +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999998 8999983 233333322 22388887743 4444443 599999998632221100
Q ss_pred -----ecCccCCEEEEE--EcCCC-CEEEEEeCCCcEEEEECCCC-----ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 288 -----LAGHKSEVCGLK--WSHDD-RELASGGNDNQLLVWNQHSQ-----QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 288 -----~~~h~~~V~~l~--~s~~~-~~lasg~~Dg~I~iwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
.......+..++ -...+ ..|+++- ...|.+|..... +....+. -...+..++|.. ..+++ |
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~i~v-~- 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NKICV-G- 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CEEEE-E-
Confidence 111222344444 11233 3455444 458888887653 2334433 457789999983 32444 3
Q ss_pred CCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--Eec
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLT 419 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~ 419 (475)
..+...+.|+.++......... .++..+... ++.+|++ + +..-.+.|. .|+... .++
T Consensus 155 --~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~---~-~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 155 --TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC---Y-DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred --eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE---e-cceEEEEcC-CCCcCcccEEE
Confidence 3666889999977665444221 123333333 3444443 2 333333343 333222 333
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
- ...+..+++ ...+|+..+.+ .|.||++.++...+.+.
T Consensus 227 W-~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 227 W-SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred c-CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 2 224555666 44578877664 59999999998776654
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.01 Score=59.28 Aligned_cols=183 Identities=11% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe--cC------CCCceEEEEe-------CC---CEEEEEeCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF--GG------HQTRAGVLAW-------NS---RILSSGSRD 270 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~--~~------h~~~v~~l~~-------~~---~~l~sgs~d 270 (475)
.+.|++++.| |=-++|+|..+|.+.|.|+.....+..- .. ....++++.| ++ -.|++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999997 4458999999999999999877766542 12 2346778888 12 478899999
Q ss_pred CcEEEEECCCC--CccE----EEecCccCCEEEEE-EcCC-C-------------------CEEEEEeCCCcEEEEECCC
Q 011916 271 RNILQHDLRVS--SDYI----CKLAGHKSEVCGLK-WSHD-D-------------------RELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 271 g~I~iwd~~~~--~~~~----~~~~~h~~~V~~l~-~s~~-~-------------------~~lasg~~Dg~I~iwd~~~ 323 (475)
|.+.+|.+-.. +... .....+.+.|..|. ++.+ | ..++....+..++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99999988521 2111 12224556666655 3221 1 1233444467899999988
Q ss_pred CceeEEEeccccceeEEEEC-----CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-----CeeEEEEcCCCCeE
Q 011916 324 QQPTLRLTEHTAAVKAIAWS-----PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-----QVCNLAWSKNVNEL 393 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~s-----p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l 393 (475)
.+..++..........+.+- ..+..|++.. .+|.|++|.+-.-+.+....... .+....++++|..+
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~---~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF---NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE---TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEE---CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 87766555333334444453 2333344433 79999999999988888775432 24556678888866
Q ss_pred EE
Q 011916 394 VS 395 (475)
Q Consensus 394 ~~ 395 (475)
+.
T Consensus 322 ~~ 323 (395)
T PF08596_consen 322 YW 323 (395)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.022 Score=54.90 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=126.8
Q ss_pred ecCCC-C-EEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC--
Q 011916 175 DWSSQ-N-VLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-- 249 (475)
Q Consensus 175 ~ws~~-~-~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-- 249 (475)
.|.++ + ++-+. .++.|.-|+..+++..... ..+.+.++.....+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45554 3 33333 3789999999877654443 2344556655555555555443 366677666655333221
Q ss_pred --C-CCceEEEEe--CCCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C
Q 011916 250 --H-QTRAGVLAW--NSRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N 314 (475)
Q Consensus 250 --h-~~~v~~l~~--~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g 314 (475)
. ..+...+.. +|.+.++... -..-.+|-+...+..+..+..+-..-++|+||||++.|..+... +
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1 122223333 3343333222 01114555543455566666666667899999999888777654 7
Q ss_pred cEEEEECCC--C----c-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEEE
Q 011916 315 QLLVWNQHS--Q----Q-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLAW 386 (475)
Q Consensus 315 ~I~iwd~~~--~----~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~ 386 (475)
.|+.|++.. + + ....+....+..-.++...+|...++... ..+.|.+|+.. |+.+..+... ..+.+++|
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~--~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW--GGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc--CCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 888887752 1 1 12222234566677888888874433321 22499999988 9999998776 77888888
Q ss_pred c-CCCCeEEEEEec
Q 011916 387 S-KNVNELVSTHGY 399 (475)
Q Consensus 387 s-~~~~~l~~~~g~ 399 (475)
- ++.+.|++++..
T Consensus 263 gG~~~~~L~iTs~~ 276 (307)
T COG3386 263 GGPDLNTLYITSAR 276 (307)
T ss_pred eCCCcCEEEEEecC
Confidence 5 456666665443
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.69 E-value=0.028 Score=52.19 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=126.3
Q ss_pred CceeccCCCCCCCCceeEEecCC-CCEEEE-EcC--CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSS-QNVLAV-GLG--TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~-~~~la~-~~~--~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
.++++..-.+....|...+.+.. +.++-+ |.- +.|+.+|+.+++......+...---..+... +++.....-.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 34666665666778888899844 444333 332 4799999999999888877654433445544 334444555679
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc-----cCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH-----KSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~ 306 (475)
...+||..+.+.+.++.- .+.-+.++.++..|+.......|..+|.. .......+.-. -..+.-+.|- +|..
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred eEEEEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 999999999999998864 35667888888888888888899999986 33333333221 1245667775 6767
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEec------------c---ccceeEEEECCCCCcEEEEe
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTE------------H---TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~ll~sg 353 (475)
.|=.=....|...|..+|+.+..+.- + ..-.+.|||.|....++++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77666777888999999987765531 1 24579999999999999987
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.033 Score=53.62 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=128.9
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 011916 214 SVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRVSSDYICKLA- 289 (475)
Q Consensus 214 ~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 289 (475)
+..|.++.. ++.+--..+.|.-|+..+++... +.. ...+.++.. + +..|+++.. .+.+++.+. +..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~-~~~~t~~~~ 103 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDT-GGKITLLAE 103 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEcc--ccEEEeccC-CceeEEecc
Confidence 345777665 45555567788888877654322 221 222233333 3 344444432 244455532 22211111
Q ss_pred ---C-ccCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 290 ---G-HKSEVCGLKWSHDDRELASGGN-----------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 290 ---~-h~~~V~~l~~s~~~~~lasg~~-----------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+ -....+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.++.+-+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 1133556778888876665433 133444444 45555556665666789999999998888754
Q ss_pred CCCCCeEEEEECCC--Cceee---ee---cCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEecCCCcce
Q 011916 355 GTADRCIRFWNTSN--GHQLN---SV---DTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 355 Gs~d~~I~iwd~~~--~~~~~---~~---~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
..+.|+-|++.. +..-. .+ ...+..-.++...+|.+.++ +..+ +.|.+|+.. ++++..+.-....+
T Consensus 183 --~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 183 --PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred --CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 678888888752 21111 11 13355677888888888865 3344 489999987 99998888777788
Q ss_pred EEEEEC-CCCCEEEEEeC
Q 011916 426 LYLATS-PDGQTIVTGAG 442 (475)
Q Consensus 426 ~~l~~s-pdg~~l~s~s~ 442 (475)
++++|- ++.+.|+..+.
T Consensus 258 t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 258 TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccceEeCCCcCEEEEEec
Confidence 888885 44455554433
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.58 E-value=0.073 Score=53.97 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=139.6
Q ss_pred CceeccCCCCCCCC-c--eeEEecCCC-CEEEEEc--CC----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE
Q 011916 156 PHKVLDAPSLQDDF-Y--LNLVDWSSQ-NVLAVGL--GT----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS 225 (475)
Q Consensus 156 p~~~l~~p~~~~d~-~--v~~l~ws~~-~~la~~~--~~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la 225 (475)
.+.+||.-.+..+. + +..+.+||+ +.+|.+. +| .|++.|+.+++.+.-.- . ......+.|.++++.|+
T Consensus 108 ~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~-~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 108 EEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E-NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp -EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E-EEESEEEEECTTSSEEE
T ss_pred eEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c-ccccceEEEeCCCCEEE
Confidence 46778877776665 4 335778886 6666654 34 59999999997654321 1 11122399999998877
Q ss_pred EEeCCC-----------eEEEEECCCCeee--EEecCCCCc--eEEEEe--CCCEEEEEe-CC---CcEEEEECCCC---
Q 011916 226 VGTNLG-----------QVQVWDGTQCKRV--RTFGGHQTR--AGVLAW--NSRILSSGS-RD---RNILQHDLRVS--- 281 (475)
Q Consensus 226 ~g~~dg-----------~v~iwd~~~~~~~--~~~~~h~~~--v~~l~~--~~~~l~sgs-~d---g~I~iwd~~~~--- 281 (475)
....+. .|..|.+.+.... ..+...... ...+.. ++++|+... .. ..+.+.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 765433 3788888766432 444443333 344544 567665543 22 34777777642
Q ss_pred CccEEEecCccCCE-EEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEec
Q 011916 282 SDYICKLAGHKSEV-CGLKWSHDDRELASGG---NDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 282 ~~~~~~~~~h~~~V-~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
......+......+ ..+... .+.+++... ..+.|...++..... ...+..+...+.-..+...+.+|++..-
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 22334443333333 334433 443444332 235777788887653 2244555553333333345566776653
Q ss_pred CCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEec--CCCeEEEEECCCCceE
Q 011916 355 GTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGY--SQNQIMVWKYPSMAKV 415 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~~ 415 (475)
-.....|+++++..+.....+. ..+.|..+...++++.+.....+ .-+.++.||+.+++..
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 1123568899998444444443 23445666666777766653222 2457888888887653
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.0088 Score=58.43 Aligned_cols=132 Identities=13% Similarity=0.130 Sum_probs=91.5
Q ss_pred CeEEEEECCCC-----cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEec-CCCCceEEEEeC
Q 011916 188 TCVYLWTASNS-----KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-RVRTFG-GHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~-----~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-~~~~~~-~h~~~v~~l~~~ 260 (475)
|.|+++++... ++..+......+.|++++-- +| +|+++.. +.|.+|++...+ ....-. .....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999884 44444444557889999866 44 4666555 789999998777 433322 234478888888
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 261 SRILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+++++.|.....+.++.++.....+..+ ......++++.+-.+++.++.+..+|.|.++...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8999999999999988665433322222 2234568888888666799999999999998876
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.0074 Score=48.00 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=70.7
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 295 VCGLKWSH---DD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 295 V~~l~~s~---~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
|++|++.. || +.|++|+.|..|++|+-. +.+..+.. ...|..+.-...+++.++. .+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l----~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYAL----ANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEe----cCCEEEEEeC--cc
Confidence 55666554 33 589999999999999855 45666654 5667788777776533332 7999999974 45
Q ss_pred eeeeecCCCCeeEEEEcCCCC----eEEEEEecCCCeEEE
Q 011916 371 QLNSVDTGSQVCNLAWSKNVN----ELVSTHGYSQNQIMV 406 (475)
Q Consensus 371 ~~~~~~~~~~v~~l~~s~~~~----~l~~~~g~~dg~I~i 406 (475)
.+..++...++.++++..-.. .|++ |.++|.|-+
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~--GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIV--GWSNGKVEV 110 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEE--EecCCeEEe
Confidence 666666777788877765432 6777 888888753
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.50 E-value=0.00032 Score=43.37 Aligned_cols=38 Identities=34% Similarity=0.654 Sum_probs=33.7
Q ss_pred ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.0061 Score=64.12 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=92.8
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC---------
Q 011916 293 SEVCGLKWSHDDRELASGG------NDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG--------- 355 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~------~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G--------- 355 (475)
..+...+++|+|+.+|..- .|. .|.+++... .. ..+... .....-.|+|+|..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999887765 243 566666532 22 333222 237889999998877665321
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE---EECCCCce-E---EEec-CCCcceEE
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV---WKYPSMAK-V---STLT-GHSLRVLY 427 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i---wd~~~~~~-~---~~l~-~h~~~V~~ 427 (475)
...+.+.+.++..++... .....|..+.|+|||..++.+. +++|++ -....++. + ..+. +-...+..
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 012344444555444433 3456799999999999999864 477877 45444541 1 1122 23334688
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.|..++.++ .+..++.-.+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEe
Confidence 9999999855 55555544555543
No 370
>PHA02713 hypothetical protein; Provisional
Probab=97.43 E-value=0.013 Score=61.69 Aligned_cols=224 Identities=9% Similarity=0.062 Sum_probs=113.2
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeee--EEecCCCCceEEEEeC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKRV--RTFGGHQTRAGVLAWN 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~~--~~~~~h~~~v~~l~~~ 260 (475)
.+..||..+++...+..+.....-.+++. -++..+++|+.+ ..+..||..+..-. ..+............+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57889998887766654432221122322 367777788753 34778888766432 2222222234455568
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCCC-------------------
Q 011916 261 SRILSSGSRDR-----NILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGNDN------------------- 314 (475)
Q Consensus 261 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~Dg------------------- 314 (475)
+.+.+.||.++ ++..||.... .... .+.........+.. +|...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 88888888764 4778888732 2111 11111111222222 677788887653
Q ss_pred ----cEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCC----CCeEEEEECCC-Cc--eeeeecCCCCe
Q 011916 315 ----QLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTA----DRCIRFWNTSN-GH--QLNSVDTGSQV 381 (475)
Q Consensus 315 ----~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~----d~~I~iwd~~~-~~--~~~~~~~~~~v 381 (475)
.+..||..+.+-.. .+.........+++ ++ .|++.||.+. ...+..||..+ .+ .+..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778877654321 11111111112222 23 3777775211 13467899876 32 33333222222
Q ss_pred eEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~ 422 (475)
..++.. ++ .|+++ |+.++ .+..||..+.+.......|.
T Consensus 506 ~~~~~~-~~-~iyv~-Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 506 LHTILH-DN-TIMML-HCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ceeEEE-CC-EEEEE-eeecceeehhhcCcccccccchhhhcC
Confidence 222222 33 44444 55555 67777777665544333343
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00074 Score=68.29 Aligned_cols=93 Identities=20% Similarity=0.388 Sum_probs=78.1
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccccee-EEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK-AIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+ +++.|- .||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEccCCC
Confidence 3468889999999999999999999999998 777888886776676 999999998 666654 99999999999999
Q ss_pred eeee--ecCCCCeeEEEEcC
Q 011916 371 QLNS--VDTGSQVCNLAWSK 388 (475)
Q Consensus 371 ~~~~--~~~~~~v~~l~~s~ 388 (475)
.+.. +.....|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8888 44566788888863
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.38 E-value=0.056 Score=48.66 Aligned_cols=204 Identities=12% Similarity=0.095 Sum_probs=119.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEe--C--CCEEEE-EeCCCcEEEEECCCCCc-cEEEec----
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAW--N--SRILSS-GSRDRNILQHDLRVSSD-YICKLA---- 289 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~--~--~~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~---- 289 (475)
+.++.+--..|.|.-||.++.+..+. +++.. +..+.+ . +..+++ ++..-.|.-||-..... ...++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 45566666667777788876554432 33222 222222 2 233333 33333455566431111 111111
Q ss_pred -CccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 290 -GHKSEVCGLKWSHDDRELASGGND---------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..+.....-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.+.+.++..-+ .+-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDS--LNY 180 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEcc--Cce
Confidence 013345566778999884432222 3444444332 22222233344478999999998888754 788
Q ss_pred eEEEEE--CCCCcee-----eeecC----C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEE
Q 011916 360 CIRFWN--TSNGHQL-----NSVDT----G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLY 427 (475)
Q Consensus 360 ~I~iwd--~~~~~~~-----~~~~~----~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 427 (475)
.|.-|| ..+|... ..+.. . -..-.+++..+|+..++ ....++|..+|..+++.+.+++-.+..|++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 887787 6666432 22221 1 12344566778888777 678899999999999999999988999999
Q ss_pred EEECC
Q 011916 428 LATSP 432 (475)
Q Consensus 428 l~~sp 432 (475)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00091 Score=67.67 Aligned_cols=92 Identities=17% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE-EEEe--CCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG-VLAW--NSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...|.-+.|+|.-.++|+++.+|.|.+..+. .+.+.++..|...++ +++| +|+.|++|-.||+|++.|+..+....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999988 888888887877777 9999 58999999999999999999655544
Q ss_pred EEecCccCCEEEEEEc
Q 011916 286 CKLAGHKSEVCGLKWS 301 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s 301 (475)
.....-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 4334445667777776
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.011 Score=46.97 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=67.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 212 VCSVQWTR---EG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 212 V~~v~~sp---dg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
|+++++.. || +.|++|+.|..|+||+- .+.+.++. ....|++|+- .+..++.+..+|+|-+|+-. ..+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~---~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS---QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc---ceee
Confidence 56666654 33 68999999999999984 35566665 3456666665 56899999999999999864 2222
Q ss_pred EecCccCCEEEEEEcC---CC-CEEEEEeCCCcEE
Q 011916 287 KLAGHKSEVCGLKWSH---DD-RELASGGNDNQLL 317 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~---~~-~~lasg~~Dg~I~ 317 (475)
..+. +..+.++.+.. || ..|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 23366666544 22 2788888888764
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.046 Score=57.64 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=108.3
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEe------CCC--cEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGS------RDR--NILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
+|.+.-.+-.....+.-..+....+...+. +++.++... .|. .|.+++. .+.......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCC--CCCCce
Confidence 666655442222222222122223444444 566665544 243 4555554 23332223332 378889
Q ss_pred EcCCCCEEEEEeCC------------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE---E
Q 011916 300 WSHDDRELASGGND------------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF---W 364 (475)
Q Consensus 300 ~s~~~~~lasg~~D------------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i---w 364 (475)
|+|||..|++.... +.+.+.++..++... .....|..+.|+|||..+++.. ++.|++ -
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVE 476 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEE
Confidence 99998888776532 233333444333322 2356799999999999998875 467777 4
Q ss_pred ECCCCce-e---eee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCE
Q 011916 365 NTSNGHQ-L---NSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 365 d~~~~~~-~---~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~ 436 (475)
....|.. + ..+ .....+..+.|..++..++.. ...+..+...++..... ..+.. ....+..++-+++ .
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~-~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~ 552 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGR-SDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--T 552 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEEe-cCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--e
Confidence 4445541 1 112 123346889999999965432 22333444444442221 12232 3566777877763 4
Q ss_pred EEEEeCCCCEE
Q 011916 437 IVTGAGDETLR 447 (475)
Q Consensus 437 l~s~s~Dg~I~ 447 (475)
|+....++.+.
T Consensus 553 iyv~~~~g~~~ 563 (591)
T PRK13616 553 VYVTDARAVLQ 563 (591)
T ss_pred EEEEcCCceEE
Confidence 55556666443
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.28 E-value=0.049 Score=58.37 Aligned_cols=210 Identities=12% Similarity=0.128 Sum_probs=135.1
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEE---EEEEcCC-CCEEEEEeC----------CCeEEEEECCCCeeeEEecCC--CC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVC---SVQWTRE-GSYISVGTN----------LGQVQVWDGTQCKRVRTFGGH--QT 252 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~---~v~~spd-g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h--~~ 252 (475)
.+.++|..+-++....++...+.+. ++.|..| +.++++|+. .|.|.|+.+...+.++....+ .+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 5888888888887777665555444 4458887 789999874 488889888775444444322 34
Q ss_pred ceEEEE-eCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEE
Q 011916 253 RAGVLA-WNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH--SQQPTLR 329 (475)
Q Consensus 253 ~v~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~--~~~~~~~ 329 (475)
.+.++. |+|++||.- +..|++|++. ..+.++.-..|...+..+...-.|..+++|..-+.+.+.-.+ .+.....
T Consensus 831 av~aL~~fngkllA~I--n~~vrLye~t-~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGI--NQSVRLYEWT-TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhhCCeEEEec--CcEEEEEEcc-ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 555554 477777654 4689999997 444555566677889999998899999999988877665544 3333322
Q ss_pred Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------------------CceeeeecCCCCeeE--EEEc
Q 011916 330 LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------------------GHQLNSVDTGSQVCN--LAWS 387 (475)
Q Consensus 330 ~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------------------~~~~~~~~~~~~v~~--l~~s 387 (475)
-+ .+....+++.+-.+..++.+. .+|.+.+....+ |+.+..+.++.-|.. -..+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae----~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~ 983 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE----NSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI 983 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec----ccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeecccccc
Confidence 22 366778888887777655443 567776665432 223333334443443 1234
Q ss_pred CCCCeEEEEEecCCCeEEEE
Q 011916 388 KNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iw 407 (475)
|-+..++. |..+|.|-+.
T Consensus 984 ~~~~~vlf--gTv~GsIG~i 1001 (1096)
T KOG1897|consen 984 PLEPKVLF--GTVNGSIGII 1001 (1096)
T ss_pred CCCCcEEE--EEccceEEEE
Confidence 45555666 6677877554
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0048 Score=61.39 Aligned_cols=142 Identities=13% Similarity=0.168 Sum_probs=99.1
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---------CCEEEEEeCCCcEEEEECCCCCc-cEEEe
Q 011916 220 EGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---------SRILSSGSRDRNILQHDLRVSSD-YICKL 288 (475)
Q Consensus 220 dg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~sgs~dg~I~iwd~~~~~~-~~~~~ 288 (475)
+.++|+ .+.....|+-.|++.|+.+.++..|.. |.-+.+. ...-+.|-.|..|.-||.|..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 334443 445556688889999999999987776 4444442 22345677788999999996665 22222
Q ss_pred cCcc----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 289 AGHK----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 289 ~~h~----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.+|. ....|++-..+| ++|+|+.+|.|++||--.......+.+...+|..|..+.+|+++++++ +..+.+-
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEE
Confidence 2322 234555554455 999999999999999743333445667888999999999999999985 7777777
Q ss_pred ECC
Q 011916 365 NTS 367 (475)
Q Consensus 365 d~~ 367 (475)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.27 E-value=0.25 Score=49.48 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC--CeeEEEEc----------------CCCCeEE
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--QVCNLAWS----------------KNVNELV 394 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s----------------~~~~~l~ 394 (475)
....+.+|+.+|++. ++++.. .=|.|.++|+.++..++..+.-. ++.=+... +....++
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 345578899999987 555543 67999999999988777664211 11111111 1112455
Q ss_pred EEEecCCCeEEEEECCCCceEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
+.+.-.-|.|.||.++++..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 5567778999999999888877665
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.24 E-value=0.026 Score=59.38 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=120.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C-----eEEEEECCCCeeeE--EecCCCCceEEEEe
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G-----QVQVWDGTQCKRVR--TFGGHQTRAGVLAW 259 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g-----~v~iwd~~~~~~~~--~~~~h~~~v~~l~~ 259 (475)
..|..+|..++.......+.......+++.. +|...++|+.| | ++..||..+.+-.. .+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 4688999999987777766555555555554 56788889888 3 47788877665332 33334445555666
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcee
Q 011916 260 NSRILSSGSRDRN-----ILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDN------QLLVWNQHSQQPT 327 (475)
Q Consensus 260 ~~~~l~sgs~dg~-----I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg------~I~iwd~~~~~~~ 327 (475)
+|.+.++|+.||. +-.||.+...- .+..+...........+ +|...++||.++ ++..||..+.+-.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 8999999999974 66777763321 11112111112222222 688888888654 5678888766432
Q ss_pred E--EEeccccceeEEEECCCCCcEEEEecCCCCC-----eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 328 L--RLTEHTAAVKAIAWSPHQSSLLASGGGTADR-----CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 328 ~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-----~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
. .+..-..... ++.- +..|++.|| .|+ +|..||..+.+-...-..............+..++++ |+.
T Consensus 458 ~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v-GG~ 531 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV-GGF 531 (571)
T ss_pred ecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE-ecc
Confidence 2 1111111111 2222 334888875 443 3777887765544332222233333333344555554 444
Q ss_pred CC-----eEEEEECCCC
Q 011916 401 QN-----QIMVWKYPSM 412 (475)
Q Consensus 401 dg-----~I~iwd~~~~ 412 (475)
+| .|..||..+.
T Consensus 532 ~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETD 548 (571)
T ss_pred cCccccceeEEcCCCCC
Confidence 43 3555555443
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.19 E-value=0.0011 Score=40.87 Aligned_cols=37 Identities=30% Similarity=0.597 Sum_probs=32.6
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.21 Score=46.67 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+....|.++.|+|+.+.|++..+...-.|+=...|+.++++.-. -...-.+.| ++.+.++--+++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44556999999999999999888888888888889999987621 122334555 455666666788888887764432
Q ss_pred cEE------Eec--Cc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEecc-------ccceeEEEECC
Q 011916 284 YIC------KLA--GH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEH-------TAAVKAIAWSP 344 (475)
Q Consensus 284 ~~~------~~~--~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h-------~~~v~~l~~sp 344 (475)
.+. .+. .+ +....+++|.+..+.|..+-+-+-+.||....... +.....+ -..|.++.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 211 111 12 55678999999999999988888788777653321 1111111 23467788887
Q ss_pred CCCcEEEEecCCCCCeEEEEECC
Q 011916 345 HQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
....|++-+. +++.+.-.|..
T Consensus 243 ~~~~LLVLS~--ESr~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSD--ESRRLLEVDLS 263 (316)
T ss_pred CCCcEEEEec--CCceEEEEecC
Confidence 7777777764 77877777754
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.015 Score=58.08 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=95.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCC-e-eeEEecCCC----Cc
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-------YISVGTNLGQVQVWDGTQC-K-RVRTFGGHQ----TR 253 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-------~la~g~~dg~v~iwd~~~~-~-~~~~~~~h~----~~ 253 (475)
...|+-.|++.|+++..+.++ ..|.-+.+.|+.+ .-++|-.+..|.-||..-. + .+...++|. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 567999999999999999754 3377778888653 2456777888999997532 2 222223332 23
Q ss_pred eEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 254 AGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 254 v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..|++- ...++++|+.+|.|++||- ........+.+...+|..+..+.+|++|+..+. ..+.+.++.
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 445554 3579999999999999997 355555668888999999999999998877664 677777654
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0062 Score=65.72 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE-----Eec------CCCCceEEEEeCC---CEEEEEeCCCc
Q 011916 209 GDSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVR-----TFG------GHQTRAGVLAWNS---RILSSGSRDRN 272 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~-----~~~------~h~~~v~~l~~~~---~~l~sgs~dg~ 272 (475)
.-.+..+...+|+...++... +-.|..||+++..... -+. ....-..++.|++ ...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345556666677766555433 3368899987532211 111 2233456788875 56777889999
Q ss_pred EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCc
Q 011916 273 ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSS 348 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ 348 (475)
|.+..+......+..+ .....+++++|+|.|++++.|-+.|++.-|...-. ....+.+ ....|.+|.|-....+
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeE
Confidence 9998876443333332 34566899999999999999999999988875432 1112111 2478999999988887
Q ss_pred EEEEec
Q 011916 349 LLASGG 354 (475)
Q Consensus 349 ll~sg~ 354 (475)
+++-+.
T Consensus 258 lvvy~n 263 (1405)
T KOG3630|consen 258 LVVYGN 263 (1405)
T ss_pred EEEecc
Confidence 766554
No 384
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.10 E-value=0.33 Score=47.63 Aligned_cols=230 Identities=16% Similarity=0.212 Sum_probs=119.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEe----cCCCCceEEEEeCC-----CEEEEEeCC--------
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR---VRTF----GGHQTRAGVLAWNS-----RILSSGSRD-------- 270 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~---~~~~----~~h~~~v~~l~~~~-----~~l~sgs~d-------- 270 (475)
..++|+|.|||++|++ ...|.|.+++ ..+.. +..+ .........+++++ .+|......
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999986654 5689999999 44443 2222 13445678888865 344443331
Q ss_pred -CcEEEEECCCCC------c-cEEEecC---ccCCEEEEEEcCCCCEEEEEeCCC-------------cEEEEECCCC--
Q 011916 271 -RNILQHDLRVSS------D-YICKLAG---HKSEVCGLKWSHDDRELASGGNDN-------------QLLVWNQHSQ-- 324 (475)
Q Consensus 271 -g~I~iwd~~~~~------~-~~~~~~~---h~~~V~~l~~s~~~~~lasg~~Dg-------------~I~iwd~~~~-- 324 (475)
..|.-|.+.... + .+..+.. ....-..|.|.|||.+.++.+..+ .|.-.+....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 133334433220 1 1112222 234467799999997766655432 2333332211
Q ss_pred -----------ceeEEEeccccceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 011916 325 -----------QPTLRLTEHTAAVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGH---------------------- 370 (475)
Q Consensus 325 -----------~~~~~~~~h~~~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~---------------------- 370 (475)
....--.++.. ...++|+|. |. |+++-.| .+..=.|--+..|.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~-l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGR-LWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTE-EEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCc-EEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00001112222 368999998 55 5554322 22222222222211
Q ss_pred -------eeeeecCCCCeeEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCceEE---E-ecCCCcceEEEEECC
Q 011916 371 -------QLNSVDTGSQVCNLAWSKN-------VNELVSTHGYSQNQIMVWKYPSMAKVS---T-LTGHSLRVLYLATSP 432 (475)
Q Consensus 371 -------~~~~~~~~~~v~~l~~s~~-------~~~l~~~~g~~dg~I~iwd~~~~~~~~---~-l~~h~~~V~~l~~sp 432 (475)
++..+..+..+..+.|... +.++++ ....+.|...++.....+. . +.....++..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 2222334456777777643 345555 5567788888886553322 2 233555899999999
Q ss_pred CCCEEEEEeCCCCEE
Q 011916 433 DGQTIVTGAGDETLR 447 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~ 447 (475)
||.++++...+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999999888888874
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.26 Score=45.84 Aligned_cols=234 Identities=15% Similarity=0.173 Sum_probs=144.3
Q ss_pred EEEEEEcCC-CCEEEEEeCCCe-EEEEECCCCeeeEEecCCCCc----eEEEEeCCCEEEEEeCC-----CcEEEEECCC
Q 011916 212 VCSVQWTRE-GSYISVGTNLGQ-VQVWDGTQCKRVRTFGGHQTR----AGVLAWNSRILSSGSRD-----RNILQHDLRV 280 (475)
Q Consensus 212 V~~v~~spd-g~~la~g~~dg~-v~iwd~~~~~~~~~~~~h~~~----v~~l~~~~~~l~sgs~d-----g~I~iwd~~~ 280 (475)
-..|.|+|. ..-++.+-.-|+ ..++|....+...++...+++ -.+++-+|.+|...-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 346888884 456777777776 478898887776665433322 12344467888776543 7899999996
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCEEEEEeC------C------------CcEEEEECCCCceeEE--Ee--cccccee
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGN------D------------NQLLVWNQHSQQPTLR--LT--EHTAAVK 338 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~------D------------g~I~iwd~~~~~~~~~--~~--~h~~~v~ 338 (475)
....+..+..|.-.-..+.|.+||+.|+.+.. | -.+.+.|..++..+.+ +. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 66777778888888889999999999988753 1 1233444444444332 22 2456688
Q ss_pred EEEECCCCCcEEEEec-CC-CCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 339 AIAWSPHQSSLLASGG-GT-ADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~-Gs-~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
.++..++|..++.+-- |. .|.---+=-...++.+.-++. ...|-+++.+.+...++.+ .-..+...+||
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT-SP~GN~~vi~d 308 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT-SPRGNRAVIWD 308 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe-cCCCCeEEEEE
Confidence 8888888874444321 00 111111222234444444432 2457778888776666664 55677889999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..++..+..-.-- .+..++- ...-++..+.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 9999877544321 1222332 333456667788888873
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.015 Score=62.62 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW- 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~- 259 (475)
+++++..|.|.+.|..+.-..........++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+.+-+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 5566667788877765541111111134689999999999999999999999999999999999998877776665544
Q ss_pred ---C-CCEEEEEeCCCcEEEEECC
Q 011916 260 ---N-SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 260 ---~-~~~l~sgs~dg~I~iwd~~ 279 (475)
+ +..++++...|. +|.+.
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEEE
Confidence 2 356788877776 45443
No 387
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.035 Score=58.50 Aligned_cols=174 Identities=11% Similarity=0.065 Sum_probs=92.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeE--EecCCCCceEEEEeCC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVR--TFGGHQTRAGVLAWNS 261 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~ 261 (475)
.|..||..+........+.....-.+++ .-+|+..++|+.+| .+..||..+.+-.. .+.........+..++
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 5888898887765544332221111222 23678888888764 48889987654322 2332223334455688
Q ss_pred CEEEEEeCCC-----------------------cEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCC----
Q 011916 262 RILSSGSRDR-----------------------NILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGND---- 313 (475)
Q Consensus 262 ~~l~sgs~dg-----------------------~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---- 313 (475)
.+.+.|+.++ .+..||.....- .+..+.........+. -+++..+.||.+
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~ 477 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKN 477 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCc
Confidence 8888888653 466777763221 1111111111111222 256777777754
Q ss_pred --CcEEEEECCC-Cc--eeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCc
Q 011916 314 --NQLLVWNQHS-QQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGH 370 (475)
Q Consensus 314 --g~I~iwd~~~-~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~ 370 (475)
..+..||..+ .+ .+..+.........+++ +..|++.|| .++ .+..||..+.+
T Consensus 478 ~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 478 VKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccc
Confidence 2467899886 33 22333322222333333 334888876 666 56667766543
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.96 E-value=0.06 Score=56.71 Aligned_cols=227 Identities=15% Similarity=0.151 Sum_probs=119.2
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeeeE--EecCCCCceEEEEeCCCEEEEEeCC-C-----cEEEEECCCCCcc
Q 011916 219 REGSYISVGTNLG------QVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRILSSGSRD-R-----NILQHDLRVSSDY 284 (475)
Q Consensus 219 pdg~~la~g~~dg------~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~d-g-----~I~iwd~~~~~~~ 284 (475)
..+.++++|+.++ .+..||..+++-.. .+......+.....++.+.++|+.| | ++..||.+... .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 3456777777763 57888887764333 3333333445555578899999998 3 56778877433 2
Q ss_pred EE--EecCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 285 IC--KLAGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 285 ~~--~~~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.. .+........... -+|...|+||.|| +|-.||..+.+-...-. ........+...-+..|+++||.+.
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCC
Confidence 22 1221111111111 2688899999886 47778877654322111 1112233333333445888876222
Q ss_pred C----CeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCC-----eEEEEECCCCceEEE--ecCCCcc
Q 011916 358 D----RCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQN-----QIMVWKYPSMAKVST--LTGHSLR 424 (475)
Q Consensus 358 d----~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg-----~I~iwd~~~~~~~~~--l~~h~~~ 424 (475)
. ..+..||..+..-...-. ....-..++. -+..|+++ |+.++ .|..||..+.+.... +......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 2 457888887765433222 1111111221 23344444 44444 377788876554332 2223333
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
+....+ ++...+.|+.|| +|..||-...
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 333333 677788888876 4555554443
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0013 Score=58.73 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=83.4
Q ss_pred EEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCC-CCeeE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTG-SQVCN 383 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~-~~v~~ 383 (475)
|..-+.|+.|.-++++..+.-. .-..|.....-+.+ +..+++ |+.+|.|++|+..- +.....+... ..+.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~~~v---G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAKLMV---GTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---CceEEe---ecccceEEEecCCccchHHHhhhccccccee
Confidence 3344567777777766433211 11112222111222 222444 44899999998762 1211112222 22222
Q ss_pred -EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEE--eCCCCEEEEecCCCC
Q 011916 384 -LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTG--AGDETLRFWNVFPSL 455 (475)
Q Consensus 384 -l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~--s~Dg~I~iW~~~~~~ 455 (475)
+.--.++.+..+ +..+|.|+.|++.-.+.+...-.|+ ..+..+..+..+++|+.+ |.|..+++|++..-.
T Consensus 107 ~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 107 GIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccccccceeEE--eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 222223334444 7899999999999888888887888 677777777778888888 888999999987544
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.89 E-value=0.45 Score=45.71 Aligned_cols=227 Identities=14% Similarity=0.155 Sum_probs=110.4
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLG--PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~--~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.++.+++..+..++++..+. .+...+.++.=..+.+. -.+....+....++..++ ++..|.|..=. +.++.-+
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 4567788887777777776654 44444445433332221 123444444444443333 34445543321 2232222
Q ss_pred -EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 -TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 -~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
....-.+.+..+.- ++.+++++..-....-||-- ..............|..|.|.+++.+.+.+ ..|.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G-~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG-QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCC-CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 22334456666665 56777777665556677764 222233333456789999999998776654 77888887722
Q ss_pred C-CceeEE----EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeE
Q 011916 323 S-QQPTLR----LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 323 ~-~~~~~~----~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l 393 (475)
. .+.-.. .......+..++|.+++. +.++|+ .|. .+.....|+.-.... ..+.+..+.|....+-+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCC-EEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 2 111111 111233478999998876 666664 453 344556666555543 35678899998877777
Q ss_pred EEEEecCCCeEEEE
Q 011916 394 VSTHGYSQNQIMVW 407 (475)
Q Consensus 394 ~~~~g~~dg~I~iw 407 (475)
+. | .+|.|.-|
T Consensus 291 ~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 291 VL--G-QDGVLLRY 301 (302)
T ss_dssp EE----STTEEEEE
T ss_pred EE--C-CCcEEEEe
Confidence 76 5 67776554
No 391
>PRK10115 protease 2; Provisional
Probab=96.79 E-value=1.1 Score=48.64 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=128.2
Q ss_pred CceeccCCCCC---CCCceeEEecCCC-CEEEEEcC--C----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE
Q 011916 156 PHKVLDAPSLQ---DDFYLNLVDWSSQ-NVLAVGLG--T----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS 225 (475)
Q Consensus 156 p~~~l~~p~~~---~d~~v~~l~ws~~-~~la~~~~--~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la 225 (475)
++.+||.-.+. ..+.+..+.|+|+ ++++.+.| | .|++.|+.++..+... +.. .-..++|.+|++.|+
T Consensus 111 ~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~--~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 111 WETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDN--VEPSFVWANDSWTFY 187 (686)
T ss_pred CEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccC--cceEEEEeeCCCEEE
Confidence 56777755442 2355777899987 66776653 2 5899999888632211 111 114699999998777
Q ss_pred EEeCC------CeEEEEECCCC--eeeEEecCCCCceEEEEe---CCCEEEEEe---CCCcEEEEECCCC-CccEEEecC
Q 011916 226 VGTNL------GQVQVWDGTQC--KRVRTFGGHQTRAGVLAW---NSRILSSGS---RDRNILQHDLRVS-SDYICKLAG 290 (475)
Q Consensus 226 ~g~~d------g~v~iwd~~~~--~~~~~~~~h~~~v~~l~~---~~~~l~sgs---~dg~I~iwd~~~~-~~~~~~~~~ 290 (475)
....+ ..|..+++.++ +....+...........+ ++.+++..+ .++.+.+++.... ......+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 76543 35778888877 334444433333332222 556555443 3457888885422 222222222
Q ss_pred ccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEecc-c-cceeEEEECCCCCcEEEEecCCCCCeE--EE
Q 011916 291 HKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLRLTEH-T-AAVKAIAWSPHQSSLLASGGGTADRCI--RF 363 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I--~i 363 (475)
-......+. +..+.+++.... ...|...++........+..+ . ..+..+.+. +.+|+++.. .++.- .+
T Consensus 268 ~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~ 342 (686)
T PRK10115 268 RKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLRQ 342 (686)
T ss_pred CCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEEE
Confidence 222222222 223333333222 123444455421122233334 3 367888887 445766654 56554 44
Q ss_pred EECCCCceeeeecC--CCCeeEEEEc--CCCCeEEEEEe--cCCCeEEEEECCCCc
Q 011916 364 WNTSNGHQLNSVDT--GSQVCNLAWS--KNVNELVSTHG--YSQNQIMVWKYPSMA 413 (475)
Q Consensus 364 wd~~~~~~~~~~~~--~~~v~~l~~s--~~~~~l~~~~g--~~dg~I~iwd~~~~~ 413 (475)
++..++ .+..+.. ...+..+.++ +++..++.... ..-+.++.+|..+++
T Consensus 343 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 343 INRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 554433 3344332 2223333344 44444443212 235678889987764
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.72 E-value=0.6 Score=44.83 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=124.5
Q ss_pred CCceeEEecCC-CCEEEEEcCCeEEEEECCCCcEEEEeeCCC----CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 168 DFYLNLVDWSS-QNVLAVGLGTCVYLWTASNSKVTRLCDLGP----GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~-~~~la~~~~~~V~lw~~~~~~~~~~~~~~~----~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+..+..|.|.. +.-++++..+.|. -..+.|+.=....... .-...+|.|.. ...+++| ..|. .+...+.++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTTDGGK 91 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEESSTTS
T ss_pred CCceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEecCCCC
Confidence 34566677775 4677778777543 2333333211111111 23466787764 3344444 4453 333334443
Q ss_pred eeEEec---CCCCceEEE-EeCCCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 243 RVRTFG---GHQTRAGVL-AWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~~~~---~h~~~v~~l-~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
.-..+. .-.+....+ +.+.......+..|.|.. ....+ ........-.+.+..+.-++||++++++..-+.+.
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~--T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR--TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE--ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE--eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 333221 112222222 334444444555555433 22233 33344455567789999999999999987765666
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE-CCCCceeee----e-cCCCCeeEEEEcCCCC
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN-TSNGHQLNS----V-DTGSQVCNLAWSKNVN 391 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd-~~~~~~~~~----~-~~~~~v~~l~~s~~~~ 391 (475)
-||--...-...-......|.+|.|.|++...+++ ..+.|++=+ ....+.... + .....+..++|.+++.
T Consensus 170 s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp EE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred EecCCCccceEEccCccceehhceecCCCCEEEEe----CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 78765322222223356789999999998854543 678888877 222222222 1 1233489999999877
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
..++ |. .|.+ +.....++.-.... .-...++.+.|..+.+-++ .+.+|.|.-|
T Consensus 246 ~wa~--gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV--GG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEE--ES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEE--eC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 7766 53 4433 33334443333322 2344578888876655454 4578877655
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.72 E-value=0.84 Score=49.71 Aligned_cols=195 Identities=10% Similarity=0.088 Sum_probs=114.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc--------eEEEEe------------------CCCEEEEEeCCCcEE
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR--------AGVLAW------------------NSRILSSGSRDRNIL 274 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~--------v~~l~~------------------~~~~l~sgs~dg~I~ 274 (475)
+..|++++.++.|.-.|..+++.+..+...... ...+++ .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888889999999999888776532211 111222 234788888999999
Q ss_pred EEECCCCCccEEEecCccCCE-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeEE
Q 011916 275 QHDLRVSSDYICKLAGHKSEV-------------CGLKWSH--DDRELASGGN----------DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h~~~V-------------~~l~~s~--~~~~lasg~~----------Dg~I~iwd~~~~~~~~~ 329 (475)
-.|.+ .++.+..+. ..+.| ..+.-.| .+..+++|+. +|.|+-+|.++++.+..
T Consensus 274 ALDA~-TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDAD-TGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECC-CCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99987 444443332 11111 0111122 2346666642 68899999999998887
Q ss_pred Eecc---------cc--------ce-eEEEECCCCCcEEEEecC----------------CCCCeEEEEECCCCceeeee
Q 011916 330 LTEH---------TA--------AV-KAIAWSPHQSSLLASGGG----------------TADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 330 ~~~h---------~~--------~v-~~l~~sp~~~~ll~sg~G----------------s~d~~I~iwd~~~~~~~~~~ 375 (475)
+..- .+ .+ ..+++.+....++. +.| ...+.|.-.|.+||+....+
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 6421 00 01 23344444442322 111 12466788899999988777
Q ss_pred cC-C---------CCeeEEEEcC-CCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 376 DT-G---------SQVCNLAWSK-NVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 376 ~~-~---------~~v~~l~~s~-~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+. . .+..-+.+.. +|+ .=++.++..+|.++++|-.+++.+...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 53 1 1222223333 553 112333889999999999999887654
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.67 E-value=0.22 Score=49.44 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=92.2
Q ss_pred CEEEEEe-CCCcEEEEECCCCCc---cEEEecC---cc----CCEEEEEEcCCCCEEEEEe--C----CCcEEEEECCCC
Q 011916 262 RILSSGS-RDRNILQHDLRVSSD---YICKLAG---HK----SEVCGLKWSHDDRELASGG--N----DNQLLVWNQHSQ 324 (475)
Q Consensus 262 ~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~---h~----~~V~~l~~s~~~~~lasg~--~----Dg~I~iwd~~~~ 324 (475)
++|+..+ ..+.|.|.|+..... ..+.+.. +. ..-..+..-|+|+.++++- . -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 3444444 666777777763221 2222221 11 1223344457888888852 2 246888888877
Q ss_pred ceeEEEecc---ccceeEEEECCCCCcEEEEec-----------------CCCCCeEEEEECCCCceeeeecCCC---Ce
Q 011916 325 QPTLRLTEH---TAAVKAIAWSPHQSSLLASGG-----------------GTADRCIRFWNTSNGHQLNSVDTGS---QV 381 (475)
Q Consensus 325 ~~~~~~~~h---~~~v~~l~~sp~~~~ll~sg~-----------------Gs~d~~I~iwd~~~~~~~~~~~~~~---~v 381 (475)
+........ ...-..+-|.|....++++.- +....++.+||+.+.+.++.++.+. -.
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 666555432 223466778887775555532 1245789999999999999998763 35
Q ss_pred eEEEEc--CCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCC-----------------CcceEEEEECCCCCEEE
Q 011916 382 CNLAWS--KNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGH-----------------SLRVLYLATSPDGQTIV 438 (475)
Q Consensus 382 ~~l~~s--~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h-----------------~~~V~~l~~spdg~~l~ 438 (475)
..+.|. |+..+=++.+.-+....++|....++ .+.++..- ..-|+.+..|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 556664 44555555333333333444434442 33333221 23479999999999998
Q ss_pred EEeC-CCCEEEEecCCCCCCC
Q 011916 439 TGAG-DETLRFWNVFPSLKAP 458 (475)
Q Consensus 439 s~s~-Dg~I~iW~~~~~~~~~ 458 (475)
.... +|.|+.||+......+
T Consensus 328 vs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-E
T ss_pred EEcccCCcEEEEecCCCCCCc
Confidence 7765 8999999998766543
No 395
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.59 Score=43.78 Aligned_cols=267 Identities=13% Similarity=0.030 Sum_probs=147.7
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecC
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~ 249 (475)
+.++.+....+-.+..++|.|+.+.....+... ...+.-.++.. .|++..++..+.-+.+.|+.+. .+...+..
T Consensus 92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 556666777777788899999988765444432 22345555544 5889988886666778887654 33444555
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
.......++.+|++-..+..|+-+.+.|+.....++..-.-..+ .+.++..+++-.+++..+ --+.+-|....+...
T Consensus 170 ~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~ 247 (370)
T COG5276 170 PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPT 247 (370)
T ss_pred CCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCce
Confidence 55556778889999999999999999999866655443332233 688888877665655544 347777877666444
Q ss_pred EEec-cccceeEE-EECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCC-CeeEEEEcCCCCeEEEEEecCCC
Q 011916 329 RLTE-HTAAVKAI-AWSPHQSSLLASGGGTADRCIRFWNTSNGH---QLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 329 ~~~~-h~~~v~~l-~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+.. ....+.++ .+.-.+++..+.- .+.-+.+-|+.+.. ....+.+.+ +...+..+ +.++.. .. .+
T Consensus 248 ~~gsyet~~p~~~s~v~Vs~~~~Yvad---ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi--ad-kn 319 (370)
T COG5276 248 VFGSYETSNPVSISTVPVSGEYAYVAD---GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI--AD-KN 319 (370)
T ss_pred EeeccccCCcccccceecccceeeeec---cccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe--cc-CC
Confidence 4322 11112222 1222233333332 23334444443321 112222222 22223222 222222 11 11
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
...+.+....+......+-...+.+.+.+-+.+.+.+...++.+.||+..
T Consensus 320 ~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 320 TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 33333433322222222222233444444566788888999999999863
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=96.62 E-value=0.8 Score=44.93 Aligned_cols=264 Identities=11% Similarity=0.048 Sum_probs=130.6
Q ss_pred eeEEecC-CCCEEEEEcCCeEEEEECCCCc-EEEEee-C-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWS-SQNVLAVGLGTCVYLWTASNSK-VTRLCD-L-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws-~~~~la~~~~~~V~lw~~~~~~-~~~~~~-~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+..+.|. +++.++++.++.|+.=. +.|+ ..+... + .....+.++.|.++ ..+++| ..|.|..- -+.++.-..
T Consensus 48 l~~v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S-~DgG~tW~~ 123 (334)
T PRK13684 48 LLDIAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHT-TDGGKNWTR 123 (334)
T ss_pred eEEEEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEE-CCCCCCCeE
Confidence 3445554 45777888776654422 2222 222111 1 12345778888643 344444 44543332 122222222
Q ss_pred ec---CCC-CceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE-EEC
Q 011916 247 FG---GHQ-TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV-WNQ 321 (475)
Q Consensus 247 ~~---~h~-~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i-wd~ 321 (475)
+. ... ......+.++..+..++..|.|..=+-. ..........-...+.++.+.+++.+++++.. |.+.. +|-
T Consensus 124 ~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~Dg-G~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~ 201 (334)
T PRK13684 124 IPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDG-GKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP 201 (334)
T ss_pred ccCCcCCCCCceEEEEECCCcceeeeccceEEEECCC-CCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEEEEcCC
Confidence 11 011 1122223344333444445544332211 12222222233457889999998877666554 55543 222
Q ss_pred CCCc-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEEEcCCCCeEEE
Q 011916 322 HSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 322 ~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~ 395 (475)
.++ -......-...+.++.+.+++.. ++++ ..|.+.+=....|..-..... ...+..+.+.+++..+++
T Consensus 202 -gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 202 -GQTAWTPHQRNSSRRLQSMGFQPDGNL-WMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred -CCCeEEEeeCCCcccceeeeEcCCCCE-EEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE
Confidence 222 11122234467899999999884 4444 467665333444544333222 234778899998776665
Q ss_pred EEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
| .+|.|. .....++.-.... .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 277 --G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 277 --G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred --c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 4 466554 3344444333332 2223577788877766655 45678887665
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.58 E-value=0.0099 Score=39.62 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
...|.+++|+|..++||+|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 4443
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.55 E-value=1.2 Score=48.21 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
.-.|..|.++++|++||..+..|.+.+.=.........+.+....|.|-.+ .+. ... ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~-----------------~v~--~~~--~~ 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTV-----------------PVD--ERF--FT 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEE-----------------Eec--hhh--cc
Confidence 357889999999999999888665444332221112223322233332221 111 000 01
Q ss_pred cCccCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 011916 289 AGHKSEVCGLKWSHD---DRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..+...|..+.|+|. +..|++-..|+++++||+....
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 234456889999985 5789999999999999997543
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.52 E-value=1.6 Score=47.32 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEEec-CCCcceEEEEECC
Q 011916 357 ADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--KVSTLT-GHSLRVLYLATSP 432 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~l~-~h~~~V~~l~~sp 432 (475)
-...|++|++.+.+.++.- .+...+..+...-.|.++++ |..-+.+.+..+...+ ....-. .+....+.+.+-.
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 5789999999888555443 56678899999999999999 8888888877766554 322222 3667777777765
Q ss_pred CCCEEEEEeCCCCEEEEecCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+. .++.+..+|.+.+-..+.
T Consensus 924 ~d-~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 924 DD-TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred Cc-eEEeecccccEEEEEecC
Confidence 54 445566788888777663
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.011 Score=63.53 Aligned_cols=111 Identities=20% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...+.+.+.-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 34555555566778888888999888887432222333335678999999999999999999999999999999999888
Q ss_pred eccccceeEE---EECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 331 TEHTAAVKAI---AWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 331 ~~h~~~v~~l---~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
..|..+..++ .+..++..++. + ...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt-~--D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLT-S--DTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEE-c--cCCCc--eEEE
Confidence 8877665554 44555663444 2 13443 6654
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.45 E-value=0.78 Score=42.77 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=117.6
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEecCCCC-ceEEEEe-CCCEEEEEeCCCcEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVRTFGGHQT-RAGVLAW-NSRILSSGSRDRNILQ 275 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~-~v~~l~~-~~~~l~sgs~dg~I~i 275 (475)
++.........-...+.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++. ++.+....-.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 34444334445667888877887777766666 689999999988766542221 1222333 4555566667889999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll 350 (475)
||.. .-+.+..+. ..++=.+++ .|++.|+.......|+++|..+.+....+.-. . ..++-+.|- +|. ++
T Consensus 115 yd~~-tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-Iy 188 (264)
T PF05096_consen 115 YDPN-TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IY 188 (264)
T ss_dssp EETT-TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EE
T ss_pred Eccc-cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EE
Confidence 9997 455555554 334556676 46777777777789999999887766555432 1 245667776 443 66
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecC----------------CCCeeEEEEcCCCCeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQLNSVDT----------------GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~~~~~~~----------------~~~v~~l~~s~~~~~l~~~ 396 (475)
|--= ....|...|..+|+.+..++. ..-...|+|.|..+.++++
T Consensus 189 ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 189 ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 6543 677888899999998877631 1347889999988888875
No 402
>PRK10115 protease 2; Provisional
Probab=96.45 E-value=1.8 Score=46.93 Aligned_cols=237 Identities=8% Similarity=0.050 Sum_probs=118.2
Q ss_pred cEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC-C-----CcEEEEE
Q 011916 211 SVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR-D-----RNILQHD 277 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~-d-----g~I~iwd 277 (475)
.+..+.|+|||++|+.+... ..|++.|+.+++.+...-... -..++| +++.|+.... + ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999999887543 358899998886432221111 145788 4555544432 2 3677778
Q ss_pred CCCCC-ccEEEecCccCCEE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceeEEEeccccceeEEEECCCCCcEE
Q 011916 278 LRVSS-DYICKLAGHKSEVC-GLKWSHDDRELASGGN---DNQLLVWNQH--SQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 278 ~~~~~-~~~~~~~~h~~~V~-~l~~s~~~~~lasg~~---Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
+.+.. .....+........ .+..+.++++++..+. ++.+.+++.. .+.....+.........+. +..+..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 87542 22223332222233 3333448887665443 4578888853 3332222222222222222 33344344
Q ss_pred EEecCCCCCeEEEEECCC-CceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCCeE--EEEECCCCceEEEec-CCCcc
Q 011916 351 ASGGGTADRCIRFWNTSN-GHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQNQI--MVWKYPSMAKVSTLT-GHSLR 424 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~-~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I--~iwd~~~~~~~~~l~-~h~~~ 424 (475)
.+..+.....|...++.+ ++....+.. ...+..+.+. ++.|+.. ...++.- .+++.... .+..+. .....
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 443222344555556552 222222333 2357777777 4455553 4456654 44554332 344443 22223
Q ss_pred eEEEEEC--CCC-CEEEEEeC---CCCEEEEecCCC
Q 011916 425 VLYLATS--PDG-QTIVTGAG---DETLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~s--pdg-~~l~s~s~---Dg~I~iW~~~~~ 454 (475)
+..+.++ +++ .++++.+. -+.+..+|+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3334444 333 34444433 356777777654
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.40 E-value=0.0073 Score=54.06 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-eeeEEecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CC
Q 011916 220 EGSYISVGTNLGQVQVWDGTQC-KRVRTFGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SE 294 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~ 294 (475)
-+..+++|+.+|.|.+|..... .....+......|-++-. ++.+..+++.||.|+.|++. ..+.+.....|. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeeeeccccCCC
Confidence 3467999999999999987621 111112222233333333 24588999999999999998 555555555566 44
Q ss_pred EEEEEEcCCCCEEEEE--eCCCcEEEEECC
Q 011916 295 VCGLKWSHDDRELASG--GNDNQLLVWNQH 322 (475)
Q Consensus 295 V~~l~~s~~~~~lasg--~~Dg~I~iwd~~ 322 (475)
+..+..+..++.++++ +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 4444444455555555 555666666654
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.98 Score=42.17 Aligned_cols=225 Identities=14% Similarity=0.167 Sum_probs=129.0
Q ss_pred EecCCC--CEEEEEc--CCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC-e
Q 011916 174 VDWSSQ--NVLAVGL--GTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQC-K 242 (475)
Q Consensus 174 l~ws~~--~~la~~~--~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~-~ 242 (475)
+.++|. .-++.+- +...+++|..+.+...+..... ...--.-.|+|||.+|...-+| |.|-|||...+ +
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 556654 2333333 5568889998887666554211 1122234699999999876543 78999998743 5
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEE--------------------EEECCCCCccEE--Eec--CccCCEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNIL--------------------QHDLRVSSDYIC--KLA--GHKSEVC 296 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~--------------------iwd~~~~~~~~~--~~~--~h~~~V~ 296 (475)
.+.++..|.-.-..+.| +|..++.+. |-|. +.|-. .+..+. .+. .+.-.|.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhhccee
Confidence 66777788777777777 677777653 2232 22322 122111 122 2344577
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-------ccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 297 GLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.++..+||..++-+-..| --.+=-...++++.-+. .....|-+|+.+-+...++++.- ..+...+|
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~ 307 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIW 307 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEE
Confidence 777777776655443222 11121222334433322 13456778888877776777654 77889999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
|..+|..+....... ...++ +...-+++ .+.+|.+.++.
T Consensus 308 da~tG~vv~~a~l~d-aaGva--~~~~gf~v--ssg~G~~~~~s 346 (366)
T COG3490 308 DAATGAVVSEAALPD-AAGVA--AAKGGFAV--SSGQGRIIFYS 346 (366)
T ss_pred EcCCCcEEecccccc-cccce--eccCceEE--ecCCceEEecc
Confidence 999998876653221 12222 22333444 33467777764
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.24 E-value=1.5 Score=43.75 Aligned_cols=140 Identities=13% Similarity=0.179 Sum_probs=75.9
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--eeEEecCCCCceEEEEeC-CCEEEEEeCCCc
Q 011916 210 DSVCSVQWTREGSYISVGT-----------NLG-QVQVWDGTQ--CK--RVRTFGGHQTRAGVLAWN-SRILSSGSRDRN 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~ 272 (475)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++. +. |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4566889999998776642 223 777776432 22 223343333445677773 33 555555443
Q ss_pred EEEEECCCCC----cc--E-EEecC----ccCCEEEEEEcCCCCEEEEEeCC-------------------CcEEEEECC
Q 011916 273 ILQHDLRVSS----DY--I-CKLAG----HKSEVCGLKWSHDDRELASGGND-------------------NQLLVWNQH 322 (475)
Q Consensus 273 I~iwd~~~~~----~~--~-~~~~~----h~~~V~~l~~s~~~~~lasg~~D-------------------g~I~iwd~~ 322 (475)
.++.|..... .. + ..+.. +......+.|.|||.+.++-+.. +.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344553211 11 1 11222 13447789999999876654421 345555655
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
.++.. .+...-.....++|+|+|.. +++
T Consensus 173 g~~~e-~~a~G~rnp~Gl~~d~~G~l-~~t 200 (367)
T TIGR02604 173 GGKLR-VVAHGFQNPYGHSVDSWGDV-FFC 200 (367)
T ss_pred CCeEE-EEecCcCCCccceECCCCCE-EEE
Confidence 54432 22222233568999999884 444
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.08 E-value=0.27 Score=51.72 Aligned_cols=189 Identities=10% Similarity=0.115 Sum_probs=85.9
Q ss_pred EEEeCCCEEEEEeCCC------cEEEEECCCCCccEEEecC---ccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Q 011916 256 VLAWNSRILSSGSRDR------NILQHDLRVSSDYICKLAG---HKSEVCGLKWSHDDRELASGGND-----NQLLVWNQ 321 (475)
Q Consensus 256 ~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~ 321 (475)
++..++.+++.|+.++ .+..||... ... ..+.. .......+. -++..++.||.+ ..+..||.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT-KSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCC-Cee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcC
Confidence 4445666666666542 466777653 222 12111 111122222 267777888865 35778887
Q ss_pred CCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCC----CeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeE
Q 011916 322 HSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTAD----RCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 322 ~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d----~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l 393 (475)
.+.+-.. .+...... .+++. .+..+++.||-..+ ..+..||..+.+-... ......-.+++. -++ .|
T Consensus 366 ~~~~W~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~-~i 440 (534)
T PHA03098 366 GESKWREEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDG-KI 440 (534)
T ss_pred CCCceeeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECC-EE
Confidence 7654221 11111111 11122 13347777641111 4688899876532221 111111111222 233 44
Q ss_pred EEEEecCC-------CeEEEEECCCCceEEE--ecCCCcceEEEEECCCCCEEEEEeCC-----CCEEEEecCCCC
Q 011916 394 VSTHGYSQ-------NQIMVWKYPSMAKVST--LTGHSLRVLYLATSPDGQTIVTGAGD-----ETLRFWNVFPSL 455 (475)
Q Consensus 394 ~~~~g~~d-------g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iW~~~~~~ 455 (475)
++..|... ..+.+||..+.+.... +.........+.+ +++.++.|+.+ ..|.+||.....
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 44433321 2388888876543321 1111111112222 67777777654 357777766544
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.03 E-value=0.23 Score=52.21 Aligned_cols=108 Identities=18% Similarity=0.326 Sum_probs=74.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEE--CCCCCcEEEEecCCCCCeEEEEECC----
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAW--SPHQSSLLASGGGTADRCIRFWNTS---- 367 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~--sp~~~~ll~sg~Gs~d~~I~iwd~~---- 367 (475)
..-+.-+.-++..++-+....+.|||.+.+...+.-. ...+.|.++.| .|++..+++.| ..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYDY 108 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchhh
Confidence 3444444444444444444589999999887544322 35788999999 47899899998 58888888542
Q ss_pred -----CCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 368 -----NGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 368 -----~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+...+..++ +..+|.+..|.++|..++. ..+++.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~----sGNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG----SGNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE----eCCEEEEECC
Confidence 123444442 4478999999999988876 3578999875
No 408
>PHA03098 kelch-like protein; Provisional
Probab=96.00 E-value=0.26 Score=51.83 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=73.2
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCCC-----cEEEEECCCCCccE
Q 011916 219 REGSYISVGTNLG------QVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRDR-----NILQHDLRVSSDYI 285 (475)
Q Consensus 219 pdg~~la~g~~dg------~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~ 285 (475)
.++..+++|+.++ .+..||..+.+-... +.........+..++.+++.||.++ .+..||.... ...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES-KWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC-cee
Confidence 3566677776542 477888777654322 2212223344556788888888763 4667777632 211
Q ss_pred E--EecCccCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 286 C--KLAGHKSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 286 ~--~~~~h~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
. .+.......... .-+++..+.||.+ +.+..||..+.+-... +.........+.. + ..+++.||.
T Consensus 372 ~~~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~ 446 (534)
T PHA03098 372 EEPPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--D-GKIYVIGGI 446 (534)
T ss_pred eCCCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--C-CEEEEECCc
Confidence 1 111111111112 2256777777732 4588899876543211 1111111111222 3 347777752
Q ss_pred CCC------CeEEEEECCCCc
Q 011916 356 TAD------RCIRFWNTSNGH 370 (475)
Q Consensus 356 s~d------~~I~iwd~~~~~ 370 (475)
+.. ..+.+||..+.+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cCCCCCcccceEEEecCCCCc
Confidence 211 238889987654
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.096 Score=57.02 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=93.3
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCcee--------E---EEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 294 EVCGLKWSHDDRELASG--GNDNQLLVWNQHSQQPT--------L---RLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg--~~Dg~I~iwd~~~~~~~--------~---~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.|..+...+|+...++. +++-.|..||++..... . ..........++.|.|.-..-.+... .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 34555556676654443 34448899998753211 1 11122344578889987554444433 7899
Q ss_pred EEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----CCcceEEEEECCCCC
Q 011916 361 IRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG----HSLRVLYLATSPDGQ 435 (475)
Q Consensus 361 I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~ 435 (475)
|++..+.-. ..+..+......++++|+|.|+.+++ |...|.+.-|.. +++....+.+ ...+|++|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 998876543 23344566778999999999999999 999999998874 4444444432 247899999988777
Q ss_pred EEEEE
Q 011916 436 TIVTG 440 (475)
Q Consensus 436 ~l~s~ 440 (475)
+|++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 77754
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.92 E-value=2.2 Score=42.96 Aligned_cols=268 Identities=11% Similarity=0.124 Sum_probs=151.6
Q ss_pred CCEEEEEcCCeEEEEECCCCcE---EEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCC--Ce------
Q 011916 179 QNVLAVGLGTCVYLWTASNSKV---TRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGTQ--CK------ 242 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~---~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~~--~~------ 242 (475)
+.+++++..|.++||+...... ..+++..-..+|..|..-. +...||+ -.-..+.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 3677788899999999866542 1333335567888887543 3345665 4457888888621 11
Q ss_pred -eeEEecCCCC--ceEEEEe---C----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 243 -RVRTFGGHQT--RAGVLAW---N----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 243 -~~~~~~~h~~--~v~~l~~---~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
.+..+..|.- ....+++ . .++|++-+.||.+.+++-+ .......+.. .--...+.+.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-SFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-cEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 2222223332 2222332 2 2688999999999999876 2222222322 223345678888888999988
Q ss_pred CCcEEEEECCCC--------------------c---eeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 313 DNQLLVWNQHSQ--------------------Q---PTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 313 Dg~I~iwd~~~~--------------------~---~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
+..|..|....- + +..++.- ..-.|..+.++.....+++.| .+.+.+.+-
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~- 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD- 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC-
Confidence 888888875310 0 1111111 111233344444445566664 678888875
Q ss_pred CCceeeeecCCCCeeEEE-Ec----CCCC---eEEEEEecCCCeEEEEECCCCceEEEecCCCcce--EEEEECCCCCEE
Q 011916 368 NGHQLNSVDTGSQVCNLA-WS----KNVN---ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV--LYLATSPDGQTI 437 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~-~s----~~~~---~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l 437 (475)
+|........+....+++ |. ..+. .+++ ++.++.+.||.=.+...-+.+ ...+| .-..|..-...|
T Consensus 270 ~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~I 345 (418)
T PF14727_consen 270 NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLI 345 (418)
T ss_pred CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceE
Confidence 566555555444333322 21 1222 2444 778999999974443333333 22222 222233334588
Q ss_pred EEEeCCCCEEEEecCCCCCCC
Q 011916 438 VTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++-+.+|.|.+-=+-+.+...
T Consensus 346 V~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred EEEcCCCcEEEEEeCCCCccc
Confidence 899999999988777666443
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.87 E-value=0.028 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.7
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
...|..++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 412
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.81 E-value=2.2 Score=42.10 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=111.5
Q ss_pred EEEcCCCCEEEEEeC-CC--eEEEEECCCCeeeEEecCCCC--ceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 215 VQWTREGSYISVGTN-LG--QVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 215 v~~spdg~~la~g~~-dg--~v~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
=+|.+||+.|+.++. +| .+.+.|+++++..+.-.+... .-..++-..+.++-...+..|.-.|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 357889977766655 44 577778888877665443211 2234444556666565667888888874 33334444
Q ss_pred CccCCEEEEEEc--CCCCEEEEEeC----------------------CCcEEEEECCCCceeEEEeccccceeEEEECCC
Q 011916 290 GHKSEVCGLKWS--HDDRELASGGN----------------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345 (475)
Q Consensus 290 ~h~~~V~~l~~s--~~~~~lasg~~----------------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 345 (475)
.....+-...|. .|+..++-.-. ...|...|+.+++....+. -...+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 444444445553 45665543211 2346666788776544443 4567788999998
Q ss_pred CCcEEEEec-CCCCCe-EEEEECCC-Cceeeeec---CCCCeeEEEEcCCCCeEEEEEecC---CCeEEEEECCCCceEE
Q 011916 346 QSSLLASGG-GTADRC-IRFWNTSN-GHQLNSVD---TGSQVCNLAWSKNVNELVSTHGYS---QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 346 ~~~ll~sg~-Gs~d~~-I~iwd~~~-~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~---dg~I~iwd~~~~~~~~ 416 (475)
...+++-|. |..+.. -+||-+.+ |.....+. ....+..=-|.++|..|....... +..|.-+|..+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 887777643 223332 24554432 33333332 223355557899999887643322 3357777888776533
Q ss_pred EecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 417 TLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 417 ~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
... ......+.-++||+++|-=+.|
T Consensus 279 ~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEe--CCceeeeEEcCCCCEEEecCCC
Confidence 222 1235567778999988764444
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.80 E-value=0.54 Score=48.11 Aligned_cols=148 Identities=16% Similarity=0.265 Sum_probs=86.7
Q ss_pred CCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEeccccceeEEEECCC----CCcEEEEecCCCCCeEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGG---NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH----QSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+|.+++|. ||+.++-.. ..|.+++=| ...+ +.-..|..+.|.|- -..|+|.- ....|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEe---ccceEEEEE
Confidence 468899996 565544322 122222211 1122 22345889999986 34577765 589999999
Q ss_pred CCC-----Cceeeee--cCC--C--CeeEEEEcCCCCeEEEEEecCCCeEEEEECC--CCceEEEecCCCcceEEEEECC
Q 011916 366 TSN-----GHQLNSV--DTG--S--QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP--SMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 366 ~~~-----~~~~~~~--~~~--~--~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+.- ++.+..- +.. - -...+.|+|....|++.++ ...-.++++. +......+ ...+.|.|.+|.+
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~--~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA--RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec--CceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 752 2222211 111 1 2345789999999888644 2222334443 33333444 4567899999999
Q ss_pred CCCEEEEEeCC-CCEEEEecCCC
Q 011916 433 DGQTIVTGAGD-ETLRFWNVFPS 454 (475)
Q Consensus 433 dg~~l~s~s~D-g~I~iW~~~~~ 454 (475)
||+.|+.+-+. =.-+|||-...
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchh
Confidence 99998876443 33577775433
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.70 E-value=2.6 Score=42.13 Aligned_cols=239 Identities=11% Similarity=0.145 Sum_probs=111.2
Q ss_pred CcEEEEeeCCCC-CcEEEEEEc-----------CCCCEEEEEe-CCCeEEEEECCC----CeeeEEecC---CC-----C
Q 011916 198 SKVTRLCDLGPG-DSVCSVQWT-----------REGSYISVGT-NLGQVQVWDGTQ----CKRVRTFGG---HQ-----T 252 (475)
Q Consensus 198 ~~~~~~~~~~~~-~~V~~v~~s-----------pdg~~la~g~-~dg~v~iwd~~~----~~~~~~~~~---h~-----~ 252 (475)
++++..+.+.+. +.....-|+ .+.++|++.+ .++.|+|.|+.+ -+..++++. +. .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 566777766553 567777776 2456777766 678999999874 344555442 11 1
Q ss_pred --ceEEEEeCCCEEEEEe--CC----CcEEEEECCCCCccEEEecCc---cCCEEEEEEcCCCCEEEEEe----------
Q 011916 253 --RAGVLAWNSRILSSGS--RD----RNILQHDLRVSSDYICKLAGH---KSEVCGLKWSHDDRELASGG---------- 311 (475)
Q Consensus 253 --~v~~l~~~~~~l~sgs--~d----g~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~lasg~---------- 311 (475)
.+.|+. +|++++++- .+ |.+.+.|-+ ........... ...-..+-|.|..+.++|..
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~-tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGE-TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TT-T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCc-cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 122221 566777652 22 346666655 23333333321 22345677788777888754
Q ss_pred ----------CCCcEEEEECCCCceeEEEeccc--cceeEEEEC--CCCCcEEEEecCCCCCeEEEEE-CCCCc----ee
Q 011916 312 ----------NDNQLLVWNQHSQQPTLRLTEHT--AAVKAIAWS--PHQSSLLASGGGTADRCIRFWN-TSNGH----QL 372 (475)
Q Consensus 312 ----------~Dg~I~iwd~~~~~~~~~~~~h~--~~v~~l~~s--p~~~~ll~sg~Gs~d~~I~iwd-~~~~~----~~ 372 (475)
...++.+||+.+.+.++++.-.. .....|.|. |+..+=++.+. -..+|..|- ...++ .+
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEE
Confidence 23579999999999998887532 335566664 44544333332 345555443 34432 11
Q ss_pred eeecC------------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEec-C----------
Q 011916 373 NSVDT------------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---AKVSTLT-G---------- 420 (475)
Q Consensus 373 ~~~~~------------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~-~---------- 420 (475)
-.+.. ..-++.|.+|.|.++|.++ ....|.|+.||+... +.+.++. +
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~ 366 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV 366 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence 11210 2447999999999999987 678999999999753 3333221 1
Q ss_pred -----CCcceEEEEECCCCCEEEEEe
Q 011916 421 -----HSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 421 -----h~~~V~~l~~spdg~~l~s~s 441 (475)
-.+...-|..|.||+.|+...
T Consensus 367 v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 367 VKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S------S----EEE-TTSSEEEEE-
T ss_pred ccccccCCCCCeEEEccCCeEEEEEe
Confidence 112235678889999887653
No 415
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.66 E-value=2.1 Score=43.75 Aligned_cols=273 Identities=16% Similarity=0.089 Sum_probs=150.0
Q ss_pred CCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 163 PSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 163 p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
..+.-|..+.++-+.-++.+-++.+..++.||..+++..++........|..+..+-.|+ |.+|+.+| |.+.+.+..+
T Consensus 159 r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 159 RPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred cccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcc
Confidence 334456677778887777788888888999999999988887644446777776665564 88899887 7777765532
Q ss_pred eeEEec-CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCc--cCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 243 RVRTFG-GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGH--KSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 243 ~~~~~~-~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
...... -....|..+.-|. ..+-.|+.+|..+.---+ .+-.....+.| -+.|.++....+| -|-+++.++.+++
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r-q~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~ 314 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR-QGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRY 314 (671)
T ss_pred ccccCCCCcchheeeeecccCCCEEEeecccceeEecCC-CCccccccccCCccccccceeeccCC-CEeeeccCceEEE
Confidence 222211 1234455555443 566677776655433322 22111111222 2345666655566 4556666666555
Q ss_pred EECCCCceeEEEeccccc-eeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeE
Q 011916 319 WNQHSQQPTLRLTEHTAA-VKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~-v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l 393 (475)
-+.. ......+....+. +-..+..| .+..+.. ++.-+.+.+-+-.+|..+.... .+..|+.+++...+..-
T Consensus 315 ~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~---~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lW 390 (671)
T COG3292 315 LTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQ---LNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLW 390 (671)
T ss_pred ecch-hhheeeeecCCCchhhhhccCchhcccceee---ccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEE
Confidence 4332 1111112111111 11111122 1111111 1123445555566666666542 23556667777755544
Q ss_pred EEEEecCCCeEEEEECCC-CceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 394 VSTHGYSQNQIMVWKYPS-MAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
+ |+.++-+..|+-.+ +..+.+..+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 391 l---gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 391 L---GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred E---EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 4 45565677777666 333333333 456788888888888 66788887554
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1.2 Score=39.62 Aligned_cols=181 Identities=16% Similarity=0.199 Sum_probs=105.8
Q ss_pred ceeEEecCCCCEEEE-Ec--CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQNVLAV-GL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~~~la~-~~--~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~ 245 (475)
|..-+....+.++-. |. ...|++||+.+++......+.. ..+..=-...-|+++.. .-.+|.-.++|..+.+.+.
T Consensus 47 fTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred hhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 334444444544433 43 4689999999998877665542 22222222223444443 3447888999999988887
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC---ccEEEecCc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS---DYICKLAGH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+. ..+.-+.++.++..|..+....++...|.+.-. .......+. -..+..+.|- ||...|-.=.+..|...|.
T Consensus 126 ~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 126 RFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 765 345567788887777777766677776665211 111112111 1123334442 5555555555555666666
Q ss_pred CCCceeEEEe------------ccccceeEEEECCCCCcEEEEe
Q 011916 322 HSQQPTLRLT------------EHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 322 ~~~~~~~~~~------------~h~~~v~~l~~sp~~~~ll~sg 353 (475)
.+|+.+..+. .|..-.+.|++.|++..++.+|
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6665543321 2455678999999998888876
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.49 E-value=1 Score=46.25 Aligned_cols=167 Identities=14% Similarity=0.263 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCCEEE-EEe--CCCeEEEEECCCCeeeEEecCCCCceEEEEeCC------CEEEEEeCCCcEEEEECCC
Q 011916 210 DSVCSVQWTREGSYIS-VGT--NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS------RILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 210 ~~V~~v~~spdg~~la-~g~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~l~sgs~dg~I~iwd~~~ 280 (475)
.+|..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..++|.+ ..|++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578899998 665444 332 244444322 2233333 4588899942 3566667788999998863
Q ss_pred CC----ccEEEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEE
Q 011916 281 SS----DYICKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 281 ~~----~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
.. +.......+- ---.++.|+|....|++-.....-.+++.+... .+..-....+.|.|.+|.+||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22 1111111111 112467899999888887765554555655322 2222224578899999999999988
Q ss_pred EEecCCCCCeEEEEECCCCce-----eeeecCCCCeeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQ-----LNSVDTGSQVCNLAW 386 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~-----~~~~~~~~~v~~l~~ 386 (475)
++-| ..=.-++||-..... --.++.++.|+++.-
T Consensus 172 VAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 172 VAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred EEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 8765 456678898543321 112344555555543
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.38 E-value=5.3 Score=43.67 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=109.0
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-------EEEEEEc----------------CCCCEEEEEeCCCeEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-------VCSVQWT----------------REGSYISVGTNLGQVQV 235 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-------V~~v~~s----------------pdg~~la~g~~dg~v~i 235 (475)
+.++.++.++.|+-.|..+|+..=.++...... ...+.+. ..+..+++++.||.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 455666667888888888887655544321100 1122221 13457889999999999
Q ss_pred EECCCCeeeEEecCCCCce----------------EE-EEeCCCEEEEEeC----------CCcEEEEECCCCCccEEEe
Q 011916 236 WDGTQCKRVRTFGGHQTRA----------------GV-LAWNSRILSSGSR----------DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v----------------~~-l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~ 288 (475)
.|.++|+.+..+... +.| ++ -...++.+++|+. +|.|+-+|.++ ++.+-.+
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~~ 352 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWAW 352 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEeeEE
Confidence 999999998776421 111 00 1112456666643 68899999984 4433222
Q ss_pred c-Cc--------cCC--------E-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeEEEec
Q 011916 289 A-GH--------KSE--------V-CGLKWSHDDRELASGG------------------NDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 289 ~-~h--------~~~--------V-~~l~~s~~~~~lasg~------------------~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
. +. .+. + ..+++.++..+++.+. ..+.|.-.|.++++....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 1 10 011 1 2234444444443321 134677788888988776654
Q ss_pred cccc---------eeEEEECC-CCC--cEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 333 HTAA---------VKAIAWSP-HQS--SLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 333 h~~~---------v~~l~~sp-~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
.... ..-+.+.- +|+ .+++.+ +.+|.++++|-++|+.+..+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~--~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAP--TKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEE--CCCCEEEEEECCCCCEEeec
Confidence 1111 11122222 442 245554 49999999999999987654
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.33 E-value=2.5 Score=39.62 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=84.9
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEE-CCCCCcc
Q 011916 211 SVCSVQWTREGSYISVGT---NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHD-LRVSSDY 284 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~---~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd-~~~~~~~ 284 (475)
.+.+.+++++|+.+|... ....+.++.. +....... ....+...+|+ +...+....+....++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2234555543 33332221 22266667774 44555555555555553 2212222
Q ss_pred EEEecC--ccCCEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------ceeEEEeccccceeEEEECCCCCcEE
Q 011916 285 ICKLAG--HKSEVCGLKWSHDDRELASGG---NDNQLLVWNQH---SQ------QPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 285 ~~~~~~--h~~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~---~~------~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
...... -...|..+.+||||..+|... .++.|++--+. .+ .+..........+.+++|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999999887765 34677776543 22 11122223356789999999998444
Q ss_pred EEecCCCCCeEEE-EEC
Q 011916 351 ASGGGTADRCIRF-WNT 366 (475)
Q Consensus 351 ~sg~Gs~d~~I~i-wd~ 366 (475)
... ..+..+.. ...
T Consensus 182 ~~~--~~~~~~~~~v~~ 196 (253)
T PF10647_consen 182 LGR--SAGGPVVRLVSV 196 (253)
T ss_pred EeC--CCCCceeEEEEc
Confidence 443 24554443 443
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=2.7 Score=39.61 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=117.7
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-- 246 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-- 246 (475)
+..+.|+|+ .++++.....-.||=-.+|+++..+.+..-.....|.|..+|++.++--.++.+.++.+.....+..
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 888999997 5788888888888888899999998875555667888988888888888889999888765422211
Q ss_pred -----ec--CC-CCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc--EEEecCc-------cCCEEEEEEcC-CCCE
Q 011916 247 -----FG--GH-QTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY--ICKLAGH-------KSEVCGLKWSH-DDRE 306 (475)
Q Consensus 247 -----~~--~h-~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h-------~~~V~~l~~s~-~~~~ 306 (475)
+. .+ ....-.++|+ .+.|+.+-+-.-+.|+.+...... ......+ -..|.++.|++ .+.+
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~L 247 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSL 247 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcE
Confidence 11 22 4456789996 367777777777777766522211 1111111 23577888887 5567
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccc---------cceeEEEECCCCCcEEE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHT---------AAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~ll~ 351 (475)
|+-+.+++.|.-.|.... ++..+.-+. -....|+..++|...++
T Consensus 248 LVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 248 LVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred EEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 777778888888887644 233222111 12356667666664444
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.28 E-value=0.54 Score=44.12 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=72.8
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE-CCCCce
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK-YPSMAK 414 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd-~~~~~~ 414 (475)
.+.+.++++++..+++...+.....++++. .+...........+....|++++...++ ...+....++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v--~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTV--DDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEE--EcCCCceEEEEecCCCcc
Confidence 688999999999887775211344555554 4444444435568889999999777776 44555555553 333322
Q ss_pred -EEEecC--CCcceEEEEECCCCCEEEEEe---CCCCEEEEecC
Q 011916 415 -VSTLTG--HSLRVLYLATSPDGQTIVTGA---GDETLRFWNVF 452 (475)
Q Consensus 415 -~~~l~~--h~~~V~~l~~spdg~~l~s~s---~Dg~I~iW~~~ 452 (475)
...+.. -...|..+.+||||..++... .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 112221 122899999999999887665 45778877665
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=95.24 E-value=1.2 Score=46.05 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=70.6
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeE--EecCCCCceEEEEeCCCEE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRIL 264 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l 264 (475)
.+..||..+++......+.....-.+++ .-+|...++|+.+ ..+..||..+++-.. .+............++.+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 5888999888766655443222112222 2367777888764 357888876553322 2222222334455688888
Q ss_pred EEEeCCC---cEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 265 SSGSRDR---NILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 265 ~sgs~dg---~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
+.|+.++ .+..||.+.. ..... +.........+. -++...+.|+ .+.+||.++.+
T Consensus 367 viGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 367 VIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred EecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCc
Confidence 8888654 4667887632 22111 111111122222 2565666664 57788887654
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.23 E-value=0.29 Score=49.05 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 220 EGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 220 dg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+..+|. .|.....++--|++.|+.+..+..|...|...... ...-++|-.+..|.-.|.+..+..+.... .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-s 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-S 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-e
Confidence 444444 34455667778899999999998877664333221 23345566667777778776664333222 2
Q ss_pred cCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 292 KSEVCGLKWSH----DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 292 ~~~V~~l~~s~----~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
...++.-.|+. ...++|.|+..|.|++||--.-+....+.+...+|..|..+.+|++++++| ...|-+-|+.
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEecc
Confidence 22233333332 345999999999999999655444445566778899999999999999986 5777777764
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.13 E-value=1.7 Score=39.43 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=83.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--------CceEEEEeCC---CEEEEEeCCCcEEEEEC
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--------TRAGVLAWNS---RILSSGSRDRNILQHDL 278 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--------~~v~~l~~~~---~~l~sgs~dg~I~iwd~ 278 (475)
.....-..+|+|++ ..|...-.--++....+.+..-+.+|. .--..++|+. .+.++-+.+-+|.-||.
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 45566678899998 455442111122222233333333333 2335678853 45566677888888885
Q ss_pred CCCC------ccEEEecC----ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCC
Q 011916 279 RVSS------DYICKLAG----HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345 (475)
Q Consensus 279 ~~~~------~~~~~~~~----h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 345 (475)
.... +.+..++. ....--+++...+|++.++.-+.++|...|..+++.+..+.-....|++.+|--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 4322 12222222 1122334556678888888888899999999999999999888899999999644
No 425
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.92 E-value=0.027 Score=59.58 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCeEEEEECC--CCcEEEEeeC----CCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 187 GTCVYLWTAS--NSKVTRLCDL----GPGDSVCSVQWTR---EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 187 ~~~V~lw~~~--~~~~~~~~~~----~~~~~V~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
-|.+.+|+++ .|++...+.+ .-...+.-|.|.| +.-++.++-.+|.|++....+... ..+.+|..++..+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 3677888775 3443222211 2344556667766 667888888889998877655433 4455688888777
Q ss_pred EeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-----CCceeEEEe
Q 011916 258 AWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-----SQQPTLRLT 331 (475)
Q Consensus 258 ~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-----~~~~~~~~~ 331 (475)
++- ..++...+ .||||..+|.+..||.++.|.+. ..++++..+
T Consensus 231 a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred HHHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 761 11111110 67888888888888877766543 333445555
Q ss_pred ccccc-eeEEEECCC-------CCc-EEEEecCCCCCeEEEEECCCCcee
Q 011916 332 EHTAA-VKAIAWSPH-------QSS-LLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 332 ~h~~~-v~~l~~sp~-------~~~-ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
.|.+. -.|.-++.+ +.+ ++.++ ....+.+++|.....+|+
T Consensus 280 phd~~p~vC~lc~~~~~~~v~i~~w~~~Itt-td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 280 PHDKHPRVCWLCHKQEILVVSIGKWVLRITT-TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCceeeeeccccccCCccceeEEEEec-ccCCcceeEeeccchhhh
Confidence 55522 222222211 111 22222 235678999988877776
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=1.9 Score=45.56 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=95.3
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..+.|+.+ .++++..+|.|++|+......... .. .....|..+.+..+| +++-..+|.|.+-+-......+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhh
Confidence 5667999987 799999999999999876544331 11 122345555555555 4444555666555433222333
Q ss_pred EecC-CCCceEEEEe---CC----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 246 TFGG-HQTRAGVLAW---NS----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 246 ~~~~-h~~~v~~l~~---~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
.+.. ......+-+| .+ ..++-....--..++-..........+..-.+.+..+..||+.++||-=..+|.|.
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~ 241 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIW 241 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEE
Confidence 3332 1111122333 11 12211110000111111111111222222235688899999999999999999999
Q ss_pred EEECCCCceeEEEec-cccceeEEEECCCCC
Q 011916 318 VWNQHSQQPTLRLTE-HTAAVKAIAWSPHQS 347 (475)
Q Consensus 318 iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~ 347 (475)
+-+....+....+.. .......++|+.+..
T Consensus 242 ~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda 272 (829)
T KOG2280|consen 242 VVSIDLSQILCEFNCTDHDPPKQMAWCGNDA 272 (829)
T ss_pred EEecchhhhhhccCCCCCCchHhceeecCCc
Confidence 998887776666552 223334788876653
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.67 E-value=2 Score=42.80 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=81.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--eeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 293 SEVCGLKWSHDDRELASGG-----------NDN-QLLVWNQHS--QQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~-----------~Dg-~I~iwd~~~--~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....|++.+++ |+++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 3466789999998777643 223 677776543 22 223444444456889999888 55543
Q ss_pred CCCeEEEE-ECCCC-----c--ee-eeecC-----CCCeeEEEEcCCCCeEEEEEecC------------------CCeE
Q 011916 357 ADRCIRFW-NTSNG-----H--QL-NSVDT-----GSQVCNLAWSKNVNELVSTHGYS------------------QNQI 404 (475)
Q Consensus 357 ~d~~I~iw-d~~~~-----~--~~-~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~------------------dg~I 404 (475)
...|..| |.... + .+ ..+.. ......+.|.|+|...++. |.. .+.|
T Consensus 89 -~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 -PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred -CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCceE
Confidence 3345444 54321 1 11 11222 2447789999999766654 421 1345
Q ss_pred EEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.-++....+....-.++ .....++|+++|+++++-..+
T Consensus 167 ~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 55555444322222232 335789999999988765433
No 428
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=1.6 Score=49.01 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=104.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+.......++|+|.-.++|+|+..|.|+++-...-+.......... .+..+.+ ..........+..+.+|.......
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce
Confidence 3344566788999999999999999999997554333322221111 1111111 122233334445556665542111
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEecccccee-EEEECCCCCcEEEEecCCCCCeE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVK-AIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~-~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
..+.+.+.+..--+--.+ +-| ..+.+++||..-..... .+..-..... -..+.+. ++..-.-..+-.-
T Consensus 113 -----~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~ 182 (993)
T KOG1983|consen 113 -----VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSP---TLSIEGLVIDLDT 182 (993)
T ss_pred -----eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeecc---ceeeecccccccc
Confidence 112333444333222223 444 77888888865321110 1111000000 0000000 0000000001111
Q ss_pred EEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 362 RFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.+|-+.... .....+...+.+..+....+.++ ++..+.+.+|+.........+ .+....++.++..++++.
T Consensus 183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h 253 (993)
T KOG1983|consen 183 VLISLPDAY-LGLSLIEYESLQVLYYSPTKILI---GFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYH 253 (993)
T ss_pred ceeeccccc-ccccccccccceeeeecCCCcce---eeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEE
Confidence 111111111 11111233344444444444443 234556666664433222222 222222388999999999
Q ss_pred CCCCEEEEecCCCCC
Q 011916 442 GDETLRFWNVFPSLK 456 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~ 456 (475)
.||.+.+||+..+..
T Consensus 254 ~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 254 TDGSYAFWDVSSGKL 268 (993)
T ss_pred ecCCEEeeecCCCce
Confidence 999999999998754
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.40 E-value=6.2 Score=39.61 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=82.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH---- 370 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---- 370 (475)
...+..++++.+++.+..-..++-||--...-...-......+.++.|.+++..+++. ..|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g----~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT----RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe----CCceEE-EecCCCCcccc
Confidence 4455667888777776654333344432211011112335568899999998855553 456544 3444443
Q ss_pred -eeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe---cCCCcceEEEEECCCCCEEEEEeCC
Q 011916 371 -QLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL---TGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 371 -~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
....... ...+..+.|.+++..+++ | ..|.+.... ..++.-... ..-....+.+.|.++++-+++| .+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 2333322 235888999988887776 5 567665553 333332222 2234567899998877766655 67
Q ss_pred CCEEEE
Q 011916 444 ETLRFW 449 (475)
Q Consensus 444 g~I~iW 449 (475)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 776554
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=94.07 E-value=2.2 Score=44.20 Aligned_cols=182 Identities=11% Similarity=0.070 Sum_probs=80.3
Q ss_pred eCCCEEEEEeCCC-----cEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeE-
Q 011916 259 WNSRILSSGSRDR-----NILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGND--NQLLVWNQHSQQPTL- 328 (475)
Q Consensus 259 ~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~D--g~I~iwd~~~~~~~~- 328 (475)
.++.+++.|+.++ .+..||... ..... .+.........+. -++...+.||.+ ..+..||..+.+-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~-~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYIS-NNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCC-CEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455566666543 456677663 22111 1111111122222 367777788754 357888876543221
Q ss_pred -EEeccccceeEEEECCCCCcEEEEecCCC-CCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEecCCCeEE
Q 011916 329 -RLTEHTAAVKAIAWSPHQSSLLASGGGTA-DRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 329 -~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~-d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.+.........++. +| .|++.||... ...+..||..+.+=...-....+... .+..-++ .|++. | |.+.
T Consensus 347 ~~l~~~r~~~~~~~~--~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~-G---G~~e 418 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLV-G---RNAE 418 (480)
T ss_pred CCCCCCCcccEEEEE--CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEE-C---CceE
Confidence 11111111112222 33 4777775211 24577788765432221111111111 1112233 44443 4 4577
Q ss_pred EEECCCCceE--EEecCCCcceEEEEECCCCCEEEEEeCCC-----CEEEEecCC
Q 011916 406 VWKYPSMAKV--STLTGHSLRVLYLATSPDGQTIVTGAGDE-----TLRFWNVFP 453 (475)
Q Consensus 406 iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~ 453 (475)
+||..+.+-. ..+.........+. -+|+..+.||.++ ++..||...
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 8888765433 22221111222222 3677777777542 355555543
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.00 E-value=0.0067 Score=59.94 Aligned_cols=147 Identities=20% Similarity=0.313 Sum_probs=103.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
......|-+.+.-++.++.+..|..||-.... .... ...+...+++|.-++..+++... ..+.+.+||+.+.....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcce-eccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHH
Confidence 34456788877779999988899999965432 2222 23455678899888887776654 78999999987543211
Q ss_pred -eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 374 -SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 374 -~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.......-.-+.|++.+.+++. |...|.+.|++..+...+...-.|..++++++|.+.+. .+.++.|..+.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred HhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence 1122223333889999999999 88899999999887776655545999999999998874 44455554443
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.82 E-value=2.7 Score=44.86 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=95.6
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEE------EeeC---------------CCCCcEEEEEEcC--CCCEEE
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTR------LCDL---------------GPGDSVCSVQWTR--EGSYIS 225 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~------~~~~---------------~~~~~V~~v~~sp--dg~~la 225 (475)
|.-|..+-+..+++.++.++.|+||+...-.... .+.. .....|..+.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 5556566665778888899999999986533211 0000 0112355554433 557899
Q ss_pred EEeCCCeEEEEECCC-------C----e---------eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCC
Q 011916 226 VGTNLGQVQVWDGTQ-------C----K---------RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 226 ~g~~dg~v~iwd~~~-------~----~---------~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 281 (475)
++..||.|.+|.+++ . + +--.+ .-...++.+++. .++||+++....|.|+-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997532 1 0 00011 123467788875 478888888888888866532
Q ss_pred C--ccEEEecCccCCEEEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q 011916 282 S--DYICKLAGHKSEVCGLKWSHDD---R---ELASGGNDNQLLVWNQ 321 (475)
Q Consensus 282 ~--~~~~~~~~h~~~V~~l~~s~~~---~---~lasg~~Dg~I~iwd~ 321 (475)
. .....-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 1111122356678889987633 2 7888899999999887
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=1.4 Score=43.73 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=83.8
Q ss_pred CEEEEEcCCeEEEEECC--CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EecCCCCc
Q 011916 180 NVLAVGLGTCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR----TFGGHQTR 253 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~----~~~~h~~~ 253 (475)
+.+.+...|.+.=|-.. +..+.-.++....++|.++.|++|.+.||+--.+.+|.+++....+... +.+..+..
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 34444334444444433 2344444444567799999999999999999999999999974333222 22334556
Q ss_pred eEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE
Q 011916 254 AGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 254 v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la 308 (475)
|..+.|. ..-++.....| +-+|-+......++..+.|+-.|.-..|.++.+.++
T Consensus 115 IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 8889994 45555555444 556666545556666777888899999999877443
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.69 E-value=8.1 Score=38.40 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ce-
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RA- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v- 254 (475)
.+.+++...+|.|+-.|.+++..+-...... ...+.+-.+..+|+ |++++.+|.+..+|..+++.+........ .+
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 3456666677788888888777542211111 11222222233666 88889999999999989999888776551 11
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc---cCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE
Q 011916 255 GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH---KSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~ 329 (475)
.........+..++.++.+...|..+. ...-....- ...+..-....++ .+..+.. ++.+.-.|..++.....
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTG-TLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCC-cEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 111112344444446777777776632 222111110 1111111111233 4444444 56777788888877665
Q ss_pred Eecc----ccceeEEEECCCC-----CcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 330 LTEH----TAAVKAIAWSPHQ-----SSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 330 ~~~h----~~~v~~l~~sp~~-----~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
...+ ...+........+ ..++. +..++.+...|..+++.+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~---~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYA---GSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEE---EecCCeEEEEEcCCCceEEEEecc
Confidence 3211 1111001111111 11222 225788999999999999888664
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=3.3 Score=43.79 Aligned_cols=181 Identities=11% Similarity=0.074 Sum_probs=93.1
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEE
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l 307 (475)
-.|+||+.. |+.+..+.-..+.+..+.|+ ...|++...+|++++|++-......... ......|..+.+..+|-.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 357888854 55554444334488899996 5889999999999999986322111111 2223345555555565333
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec-cccceeEEEE--CCCCC--c-EEEEecCCCCCeEEEEEC--CCCceeeeecCCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAW--SPHQS--S-LLASGGGTADRCIRFWNT--SNGHQLNSVDTGS 379 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~--sp~~~--~-ll~sg~Gs~d~~I~iwd~--~~~~~~~~~~~~~ 379 (475)
.+ .+|.+.+-.-.....+.++.. .......-+| .+++. . ++...- ..+ ..++.. .+.+........+
T Consensus 143 lt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 143 LT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred Ee--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhh-hcccceecccccccccCCCCc
Confidence 33 344444433222111222221 0011111222 12211 1 111100 000 011111 1122222122347
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
.+..+..||+.++|+. -...|.|.+-+....+.+.++.
T Consensus 218 ~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLAL--YTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEE--EecCCcEEEEecchhhhhhccC
Confidence 7888999999999998 5578999998887777766665
No 436
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.64 E-value=7.2 Score=38.91 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=18.5
Q ss_pred EEEEECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 404 IMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 404 I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+.+||..+.+. +..+. ..+-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp--~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELP--QGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCC--CCccceEEEEeCCEEEEEcCCC
Confidence 45788766543 22221 1111222333467777777753
No 437
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.61 E-value=7.3 Score=37.59 Aligned_cols=227 Identities=14% Similarity=0.039 Sum_probs=120.7
Q ss_pred CEEEEEcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-------------
Q 011916 180 NVLAVGLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR------------- 243 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~------------- 243 (475)
..+..|.+..+++.+... ++..+++ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 467788888888888765 4455554 467899999988777665544 344599999732221
Q ss_pred --eEEecCCCCceEEEEe-CC--CEEEEEeCCCcEEEEECCCCCccEEEec-------CccCCEEEEEEcC--CCCEEEE
Q 011916 244 --VRTFGGHQTRAGVLAW-NS--RILSSGSRDRNILQHDLRVSSDYICKLA-------GHKSEVCGLKWSH--DDRELAS 309 (475)
Q Consensus 244 --~~~~~~h~~~v~~l~~-~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~s~--~~~~las 309 (475)
....-+|......+.. .+ ..++++....+|.++...........+. .-...+..+..++ ....+..
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 0111133333333333 22 2444555566777765432211111111 1112333333333 2457777
Q ss_pred EeCCCcEEEEECCC--CceeE---E--Eeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeecCCC
Q 011916 310 GGNDNQLLVWNQHS--QQPTL---R--LTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVDTGS 379 (475)
Q Consensus 310 g~~Dg~I~iwd~~~--~~~~~---~--~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~~~~ 379 (475)
|+..+-..++++.. ..... . ..... .++ ++.--+++..+++ .|....+.|...... ...+.-..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc-----~~~~~v~Vn~~G~~~~r~~~l~w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLC-----YDEFGVFVNLYGKRRSRNPILHWEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEE-----ECcEEEEEeCCCCccccceEEEcCC
Confidence 76643344444432 11000 0 00111 233 3333444554444 577777778654122 22344556
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
...++++. ..+|++. .++.|.|+++.+++.+.++..
T Consensus 245 ~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 66777776 3666653 467799999999998888863
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.60 E-value=0.29 Score=43.01 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=46.6
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCc-----------------------EE--EEe------eC---C------CC
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSK-----------------------VT--RLC------DL---G------PG 209 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-----------------------~~--~~~------~~---~------~~ 209 (475)
+.++++||.|+.||+..+..|+|.+..+.. .. ..+ .. . ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 457899999999999999999999333211 00 000 00 0 01
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCeEEEEECC
Q 011916 210 DSVCSVQWTREG------SYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 210 ~~V~~v~~spdg------~~la~g~~dg~v~iwd~~ 239 (475)
..|.+++|||.| .+||+-+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 267788888843 477888888888888754
No 439
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.55 E-value=7.8 Score=37.70 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=52.7
Q ss_pred EEEEeCCCEEEEEeCCC-----cEEEEECCCCCcc--EEEecCccCCE--EEEEEcCCCCEEEEEeC-----CCcEEEEE
Q 011916 255 GVLAWNSRILSSGSRDR-----NILQHDLRVSSDY--ICKLAGHKSEV--CGLKWSHDDRELASGGN-----DNQLLVWN 320 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~--~~~~~~h~~~V--~~l~~s~~~~~lasg~~-----Dg~I~iwd 320 (475)
..++.++.+++.|+.++ .+..+|+...... ...+..-.... .+++. -++++.+.|+. ...+..||
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 34455777778887653 4666777633211 11111111111 11222 25667777764 24688889
Q ss_pred CCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCC----eEEEEECCCCc
Q 011916 321 QHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADR----CIRFWNTSNGH 370 (475)
Q Consensus 321 ~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~----~I~iwd~~~~~ 370 (475)
+.+.+-.. .+.. .......+..-++ .|++.|| .++ .+..||..+.+
T Consensus 146 ~~~~~W~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG--~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 146 LETQEWFELPDFPG-EPRVQPVCVKLQN-ELYVFGG--GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCCeeECCCCCC-CCCCcceEEEECC-EEEEEcC--CCCccccceEEEecCCCe
Confidence 87654322 1111 1111112222233 4777775 332 35688887654
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=93.51 E-value=8.2 Score=37.85 Aligned_cols=228 Identities=11% Similarity=0.073 Sum_probs=113.8
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCc-EEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK-VTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.++.+.+.++..++++..+.|+.- .+.++ ....... ...+....+.....+..+++ +..|.|..=+ +.++.-.
T Consensus 89 ~~~l~~v~~~~~~~~~~G~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~ 165 (334)
T PRK13684 89 NFRLISISFKGDEGWIVGQPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWE 165 (334)
T ss_pred ccceeeeEEcCCcEEEeCCCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCce
Confidence 34566677776666677766665543 22232 2222110 01112222222223333333 3445443322 2222222
Q ss_pred Eec-CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 TFG-GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~-~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+. .-...+..+.+. +..++..+..|.+..- .+..+. .......-...+.++.+.++++.+++| ..|.+++=...
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 221 224466777774 3445555556655432 111222 223333445678999999998877765 45766542233
Q ss_pred CCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~ 394 (475)
.+..-..... ....+.++.+.+++. +++++ .+|.|. .....|+.-.... .......+.|..+++.++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 3322111111 123578899999776 55554 466555 3444454443332 223577888887777777
Q ss_pred EEEecCCCeEEEEE
Q 011916 395 STHGYSQNQIMVWK 408 (475)
Q Consensus 395 ~~~g~~dg~I~iwd 408 (475)
+ | ..|.|..|+
T Consensus 319 ~--G-~~G~il~~~ 329 (334)
T PRK13684 319 L--G-QRGVLLRYV 329 (334)
T ss_pred E--C-CCceEEEec
Confidence 6 5 577777665
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=9.9 Score=38.75 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
-.|..|..++.|..++..+.+|.+.++-......-..++.....|+|-.+. +..|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 357788889999999999999977665433333333444444444444332 22222211
Q ss_pred cCccCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 289 AGHKSEVCGLKWSHDD---RELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
..-.+...+|+|+. ..|..-.+|+.|++||+.....++..
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235567788854 57777788999999999877665443
No 442
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.46 E-value=8.4 Score=37.84 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=16.1
Q ss_pred EEEEeCCCEEEEEeCC-----------CcEEEEECC
Q 011916 255 GVLAWNSRILSSGSRD-----------RNILQHDLR 279 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~d-----------g~I~iwd~~ 279 (475)
..+..++.+.+.|+.+ ..+..||..
T Consensus 58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 3445577777888753 246677876
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.37 E-value=2 Score=46.49 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------Ccee---EEE--------eccccceeEEEECCCC---Cc
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHS----------QQPT---LRL--------TEHTAAVKAIAWSPHQ---SS 348 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----------~~~~---~~~--------~~h~~~v~~l~~sp~~---~~ 348 (475)
-+|..|.++++|.+||..|..|. .|-.+.. ++.. ..+ ..+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46899999999999999998664 4433321 1110 010 1234577888888874 55
Q ss_pred EEEEecCCCCCeEEEEECC
Q 011916 349 LLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~ 367 (475)
|++-. .|++|++||+.
T Consensus 164 l~vLt---sdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLT---SDNTLRLYDIS 179 (717)
T ss_pred EEEEe---cCCEEEEEecC
Confidence 65543 58888888874
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.32 E-value=7.6 Score=36.93 Aligned_cols=216 Identities=15% Similarity=0.167 Sum_probs=124.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCeeeEEecC-----CCCceEEEEeCC--------------CEE
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGT-------QCKRVRTFGG-----HQTRAGVLAWNS--------------RIL 264 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~-------~~~~~~~~~~-----h~~~v~~l~~~~--------------~~l 264 (475)
.-+.|+++|.+.+-++....+...+||.. ...++.++.. .....+.+.||+ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999877777778899999986 1223333331 223566676642 246
Q ss_pred EEEeCCCcEEEEECCCCCc----cEEEec-CccCCE-EEEEEcC--CCCEEEEEe-CCCcEEEEECCCCceeE--EEec-
Q 011916 265 SSGSRDRNILQHDLRVSSD----YICKLA-GHKSEV-CGLKWSH--DDRELASGG-NDNQLLVWNQHSQQPTL--RLTE- 332 (475)
Q Consensus 265 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h~~~V-~~l~~s~--~~~~lasg~-~Dg~I~iwd~~~~~~~~--~~~~- 332 (475)
+.+++||+|.-|....... ....+. ...+.| ..+++.. .+.+|..+. ..++|.|+|-.-.+... .+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998643222 112222 112223 3455543 244555443 46788888754322110 0110
Q ss_pred ---------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC---CeeEEEEcC------
Q 011916 333 ---------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS---QVCNLAWSK------ 388 (475)
Q Consensus 333 ---------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~---~v~~l~~s~------ 388 (475)
..-.|+-..-.++++.=++ |.--|.|-+||+ .|+.++.+..+. ..+.++..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~---G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA---GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCccccccc---CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0001111111222221111 224578999996 578888776554 345566654
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc------ceEEEEECC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL------RVLYLATSP 432 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 432 (475)
.+..|+- ...||+|..||..+++.+..+....+ .++.|+|..
T Consensus 260 sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4566665 67799999999999998888876433 357777765
No 445
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.26 E-value=9.8 Score=40.35 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=89.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEec-CCCC------ceEEEEe-C-CCEEEEEeC-CC---
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFG-GHQT------RAGVLAW-N-SRILSSGSR-DR--- 271 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~-~h~~------~v~~l~~-~-~~~l~sgs~-dg--- 271 (475)
.-.+.|.+|.|..+++.+++...+|.|++||...+... ..+. .+.. -|..... + ..++++.+. ++
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 34678999999999999999999999999998332221 1222 1222 2222221 1 345555444 32
Q ss_pred cEEEEECCCCCccEEEec---CccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecc-----c-cceeEEE
Q 011916 272 NILQHDLRVSSDYICKLA---GHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEH-----T-AAVKAIA 341 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-----~-~~v~~l~ 341 (475)
..+++.+......+..+. .+........|+. +|.+..- .++.|.+|++...+...++.-. . ..+.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 456666622233232222 1222222233333 4543333 5679999999877655544321 1 1233332
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
- |....++.+ .+++|++.|+.-...+.+++
T Consensus 285 ~-~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 P-PSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred c-CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 2 233335554 58999999998777666665
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.20 E-value=9.6 Score=37.77 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=106.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC----CCCE--EEEEeC-C---CcEEEEECCCC-ceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH----DDRE--LASGGN-D---NQLLVWNQHSQ-QPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~----~~~~--lasg~~-D---g~I~iwd~~~~-~~~~~~ 330 (475)
.+++....++-+.+||+. ++.++.+.. +.+..+..-. .|+. ||.++. + +.|++|.+... ..+..+
T Consensus 69 SlIigTdK~~GL~VYdL~--Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD--GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -EEEEEETTTEEEEEETT--S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ceEEEEeCCCCEEEEcCC--CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 577777888899999996 455555532 2333332211 3332 444442 2 56999977531 123333
Q ss_pred ec-------cccceeEEEE--CC-CCCcEEEEecCCCCCeEEEEECC---CC----ceeeeecCCCCeeEEEEcCCCCeE
Q 011916 331 TE-------HTAAVKAIAW--SP-HQSSLLASGGGTADRCIRFWNTS---NG----HQLNSVDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 331 ~~-------h~~~v~~l~~--sp-~~~~ll~sg~Gs~d~~I~iwd~~---~~----~~~~~~~~~~~v~~l~~s~~~~~l 393 (475)
.. ....+..+++ ++ +|...+...+ .+|.+..|.+. .+ +.++.+...+++..+........|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 21 1123566766 34 4554555443 78988877764 33 467888888999999999999999
Q ss_pred EEEEecCCCeEEEEECCC-----CceEEEecC--CCcceEEEEEC--CCC--CEEEEEeCCCCEEEEecCCC
Q 011916 394 VSTHGYSQNQIMVWKYPS-----MAKVSTLTG--HSLRVLYLATS--PDG--QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~l~~s--pdg--~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++ +.++.-|.-|+... ++.+....+ ....|-.|++- .++ -+|+|.-.+++..||+....
T Consensus 223 Yv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99 88887777777642 233333333 34567777763 343 34555556788999998754
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.95 E-value=4.7 Score=42.65 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECC-----C
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLR-----V 280 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~-----~ 280 (475)
...-+.-+.-++..++-.....+.|||...+.....-. ...+.|.++.| +++.+++.|....|.++--. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444445555555554455679999998887544332 45788999999 56788888888888887431 1
Q ss_pred CC---ccEEE--ecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 281 SS---DYICK--LAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 281 ~~---~~~~~--~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11 11222 23344 6799999999996665554 578888753
No 448
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.78 E-value=2.1 Score=45.05 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=58.1
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.|+-.|+....+.|.+.|.-+..+..+..|+. -...-.+.++|+.+.+....+ .-...|.|-|-...|+.-+.|
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCC
Confidence 45556666677777888887888887777776 555567888898765543222 234678899988888877766
Q ss_pred CCEEEE-ecCCCCC
Q 011916 444 ETLRFW-NVFPSLK 456 (475)
Q Consensus 444 g~I~iW-~~~~~~~ 456 (475)
. +.|| +++..+.
T Consensus 397 n-l~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 N-LCIWYNIDAPEQ 409 (1636)
T ss_pred c-eEEEecCCcchh
Confidence 5 6666 5554443
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=3.6 Score=41.73 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
-+|..+..++.|..++-.|.+|.+.++=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3578888999999999999998766554
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.17 E-value=0.76 Score=29.29 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAW 386 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~ 386 (475)
|+++.|+++.. .++.|.++|..+++.+..+..+.....++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 57788888765 689999999999999888877665666655
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=2.6 Score=47.24 Aligned_cols=137 Identities=14% Similarity=0.218 Sum_probs=90.6
Q ss_pred eCCCcEEEEECCCCceeEEEeccccceeEEE--------ECCCCCcEEEEecCCCCCeEEEEECC----CCcee-----e
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIA--------WSPHQSSLLASGGGTADRCIRFWNTS----NGHQL-----N 373 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~ll~sg~Gs~d~~I~iwd~~----~~~~~-----~ 373 (475)
+.|+.+.+|+..++.....+.+-...|..|. |-|.=+++++.+ .--.|.++-+. ++..- .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCcccccccce
Confidence 4578999999999777777777666666655 344556666665 35555555432 21111 1
Q ss_pred eec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--C---c---e--------------EEEec-CCCcceEEEE
Q 011916 374 SVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--M---A---K--------------VSTLT-GHSLRVLYLA 429 (475)
Q Consensus 374 ~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~---~---~--------------~~~l~-~h~~~V~~l~ 429 (475)
.+. .+..|.++....+|+.+++ | .||.|+-.-+.. + + + +..+. .+..+|..+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 122 3567889998888888886 5 566544322221 1 0 0 12233 4677999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.......|.+-+..|+|.+|++..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 988888999999999999999987
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.91 E-value=2.2 Score=43.00 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEECC-CCeeeEEecCCCCceE---
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-------YISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAG--- 255 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-------~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~--- 255 (475)
...+|-.|++.|+++..+.++ +.| -|.|.|+.+ .-++|-.+..|.-.|.. .+..+.... ....++
T Consensus 489 ~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~ 564 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNK 564 (776)
T ss_pred cccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccc
Confidence 467888899999999998753 333 567777432 34456555566555643 232222211 111111
Q ss_pred --E-EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 256 --V-LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 256 --~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+ ..-...+++++++.|.|++||-- +......+.+....|..|..+.+|.++++.+. ..|.+-|++
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2 22245799999999999999964 44445567788889999999999998877765 578887765
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.59 E-value=17 Score=36.76 Aligned_cols=142 Identities=10% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCCCceEEEEeC------CCEEEEEeCCCcEEEEECCCCC------
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQTRAGVLAWN------SRILSSGSRDRNILQHDLRVSS------ 282 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~l~~~------~~~l~sgs~dg~I~iwd~~~~~------ 282 (475)
+...|++|+.+|.++||+..... .+.+ ..-..+|..+... ....++.-.-+.+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999975432 1111 1234577777652 2333333556677777773221
Q ss_pred --ccEEEecCccC--CEEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEe
Q 011916 283 --DYICKLAGHKS--EVCGLKWSH----D-DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 283 --~~~~~~~~h~~--~V~~l~~s~----~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg 353 (475)
..+..+..|.- ....+++-+ . ..++.+=+.||.+.+++-+.......+.. ---...+.+++.-..++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 11222333332 223333322 2 35788889999999999876543333333 22234577877777666654
Q ss_pred cCCCCCeEEEEEC
Q 011916 354 GGTADRCIRFWNT 366 (475)
Q Consensus 354 ~Gs~d~~I~iwd~ 366 (475)
.+..+.-|..
T Consensus 194 ---ss~~l~~Yky 203 (418)
T PF14727_consen 194 ---SSWTLECYKY 203 (418)
T ss_pred ---CceeEEEecH
Confidence 4677777754
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.37 E-value=2.7 Score=42.24 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=59.0
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeE-EEECCC-----------------CCcE
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKA-IAWSPH-----------------QSSL 349 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~-l~~sp~-----------------~~~l 349 (475)
+......+.+|..+|++++.|+..+-|.|.++|+..+..++.+++-.++-.. +..... ..+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3344567889999999999999888899999999998877776653332111 111111 1123
Q ss_pred EEEecCCCCCeEEEEECCCCceeeeec
Q 011916 350 LASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
+.-. -.-|.|.||.+++|..+..+.
T Consensus 383 vIya--prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYA--PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEe--ccCCeEEEEecCCCCEEEEEE
Confidence 3322 268999999999988877664
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.34 E-value=27 Score=38.61 Aligned_cols=155 Identities=13% Similarity=0.168 Sum_probs=97.0
Q ss_pred CCCCcEEEEEEc---C----CCCEEEEEeCCCeEEEEECCCC---------------eeeEEecC---CCCceEEEEeCC
Q 011916 207 GPGDSVCSVQWT---R----EGSYISVGTNLGQVQVWDGTQC---------------KRVRTFGG---HQTRAGVLAWNS 261 (475)
Q Consensus 207 ~~~~~V~~v~~s---p----dg~~la~g~~dg~v~iwd~~~~---------------~~~~~~~~---h~~~v~~l~~~~ 261 (475)
....+|..|+|. . ..++|++=.. ..+.|+...-. ..+..+.. .......++||+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 2246666655 56777762211 22333331 223556777763
Q ss_pred ---CEEEEEeCCCcEEEEECCCC----CccEEEecCcc----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 262 ---RILSSGSRDRNILQHDLRVS----SDYICKLAGHK----------SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 262 ---~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..||.....|...|||+... .........+. .....|.|.++-+.|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 79999999999999999211 11111111112 22347889888888888776 57899999877
Q ss_pred ceeE--EEeccccceeEEEECCC--CCcEEEEecCCCCCeEEEEECCC
Q 011916 325 QPTL--RLTEHTAAVKAIAWSPH--QSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 325 ~~~~--~~~~h~~~v~~l~~sp~--~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.... ........|..+.-+|. +..++. ....|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-----TSKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEE-----ecCeEEEEEccC
Confidence 5522 22234567889988887 333333 357888888876
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.91 E-value=1.8 Score=39.55 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=39.8
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCCccEEE------ec-------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 256 VLAWNSRILSSGSRDRNILQHDLRVSSDYICK------LA-------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 256 ~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+..++++|++.+.+|.+++||+......... +. .....|..+.++.+|.-+++-++ |..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 34444555555555555555555422211110 11 34566888888888877776654 788888876
Q ss_pred CCce
Q 011916 323 SQQP 326 (475)
Q Consensus 323 ~~~~ 326 (475)
-+.-
T Consensus 96 L~~W 99 (219)
T PF07569_consen 96 LGCW 99 (219)
T ss_pred ccee
Confidence 5443
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.90 E-value=0.039 Score=54.76 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=94.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
....|-+.+.-+++++.+..|..||-. ++..... ...+....++|| + ..++.+-..+.+.+||+.........+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345688877779998888889999843 3332222 244566778885 3 4566677889999999974332222222
Q ss_pred C-ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcE
Q 011916 290 G-HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 290 ~-h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
+ |... -+.|++.+..++.+...|.+.|++..+.+.+.....|...+.+++|.+.+..+
T Consensus 116 g~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 116 GTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred CcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 2 2222 27899999999999999999999998887776666699999999999988633
No 458
>PLN02153 epithiospecifier protein
Probab=90.81 E-value=17 Score=35.56 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=48.8
Q ss_pred CeEEEEECCCCcEEEEeeCCC--CC---cEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeE--EecC---CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGP--GD---SVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVR--TFGG---HQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~--~~---~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~--~~~~---h~~ 252 (475)
+.+++||..+.+......... .. ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 368899998877665433211 11 1222222 56677777753 357888987654332 2210 111
Q ss_pred ce--EEEEeCCCEEEEEeCC-----------CcEEEEECCC
Q 011916 253 RA--GVLAWNSRILSSGSRD-----------RNILQHDLRV 280 (475)
Q Consensus 253 ~v--~~l~~~~~~l~sgs~d-----------g~I~iwd~~~ 280 (475)
+. .....++.+++.|+.+ ..+.+||...
T Consensus 128 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 11 2233466777777754 2467788763
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.77 E-value=19 Score=40.46 Aligned_cols=179 Identities=15% Similarity=0.171 Sum_probs=102.8
Q ss_pred EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC---------CCCEEEEEeC---------CCeEEEEECC-----
Q 011916 183 AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR---------EGSYISVGTN---------LGQVQVWDGT----- 239 (475)
Q Consensus 183 a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp---------dg~~la~g~~---------dg~v~iwd~~----- 239 (475)
.-+....|.|.+..+.+++..+++...+.|++++..- ...|||+|+. .|.+.|+|+-
T Consensus 999 p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 999 PEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred cccccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 3344556888888888877777776677777776532 1358999864 3889999852
Q ss_pred CCe-----eeEEe--cCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCCCEEEEE
Q 011916 240 QCK-----RVRTF--GGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 240 ~~~-----~~~~~--~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~lasg 310 (475)
-++ .++.+ +..++.|..++- +|+++.+- ...|.+|++......+-. +.. -.+.-....-=+++|+.|
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~--GqKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl~g 1154 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ--GQKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLILAG 1154 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEEeccEEEEcc--CcEEEEEEeccCCcceeeEEec--cceeEEehhhhhhheehh
Confidence 222 22222 245677877775 56555443 357999999533332221 111 112222222234566666
Q ss_pred eCCCcEEEEECCCCce-eEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 311 GNDNQLLVWNQHSQQP-TLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~-~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
..-..|.+.-....-. +.-+. ...-.+.++.|--+|..|....+ .+|+.|++|-.
T Consensus 1155 DV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1155 DVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMY 1212 (1366)
T ss_pred hhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEe
Confidence 6656666655443221 11111 13345788888888876644432 47899998864
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.62 E-value=2 Score=37.67 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.6
Q ss_pred cceEEEEECCCC------CEEEEEeCCCCEEEEecCCC
Q 011916 423 LRVLYLATSPDG------QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 423 ~~V~~l~~spdg------~~l~s~s~Dg~I~iW~~~~~ 454 (475)
..|.+++|||-| .+|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 478999999954 47888999999999987754
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=16 Score=34.57 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=115.6
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-- 326 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-- 326 (475)
-..-+..+.+.+++...+..+.-++|.|+.....+...-.-.. +--.++.. .|++..++..|.-+.+.|+.+...
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3445667777889999999999999999987665544322222 33444444 588999998778888999886542
Q ss_pred -eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 327 -TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH---QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 327 -~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.-...........++.+-+- -+.+. .|+-+.+.|+.... .+...+.+..+.++..+++.-+++. . +.
T Consensus 163 lagrya~~~~d~~~v~ISGn~--AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y--~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNY--AYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--Y--DE 233 (370)
T ss_pred eeeeeccCCCCceeEEEecCe--EEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--c--cc
Confidence 22333333334566666443 33332 68889999987654 4455566767888888888777766 2 33
Q ss_pred eEEEEECCCCceEEEecC-CCcceEEE-EECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 403 QIMVWKYPSMAKVSTLTG-HSLRVLYL-ATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~-h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
-+.+-|..+.+....+-. .+..+.++ .+.-.+++...+..+.-+-+-|+...
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 466666655442222211 11111111 12223455555555555555555543
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.19 E-value=33 Score=37.76 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe----cC---------------CCcceEEEEECCCCCEEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL----TG---------------HSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~~---------------h~~~V~~l~~spdg~~l~ 438 (475)
...|.++....-+..++. .+.||.|.++|-.+++.+... .. +-..+..++|||.+..++
T Consensus 259 ~~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345777777777777777 789999999998887655444 10 112345689999999999
Q ss_pred EEeCCCCEE
Q 011916 439 TGAGDETLR 447 (475)
Q Consensus 439 s~s~Dg~I~ 447 (475)
.-..||.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999965
No 463
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.99 E-value=27 Score=36.41 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=114.9
Q ss_pred CCEEEEEcCCeEEEEECCCCc-EEEEeeCCC-CCcEEEEEEcCCC-CEEEEEeCCC--eEEEEECCCCeeeEEecCCCCc
Q 011916 179 QNVLAVGLGTCVYLWTASNSK-VTRLCDLGP-GDSVCSVQWTREG-SYISVGTNLG--QVQVWDGTQCKRVRTFGGHQTR 253 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~-~~~~~~~~~-~~~V~~v~~spdg-~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~ 253 (475)
+.++.+..+|.++...+.... .+....++. .....++.+..+| .+|++|+.-| .+.-|....-+.+..+. .-++
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~P 301 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGP 301 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----S
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCC
Confidence 357778889998888776544 222222232 4455667766555 4788887754 45555544444555554 3356
Q ss_pred eEEEEe-C----C-C------EEEEEe---CCCcEEEEECCCCCc-cEEEecCc--cCCEEEEEEcC-CCCEEEEEeCCC
Q 011916 254 AGVLAW-N----S-R------ILSSGS---RDRNILQHDLRVSSD-YICKLAGH--KSEVCGLKWSH-DDRELASGGNDN 314 (475)
Q Consensus 254 v~~l~~-~----~-~------~l~sgs---~dg~I~iwd~~~~~~-~~~~~~~h--~~~V~~l~~s~-~~~~lasg~~Dg 314 (475)
|..++. + + . .|++++ .+|.+++..-...-. ........ -..++.+.... ++.+|+.+..+
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~- 380 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN- 380 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-
Confidence 777766 1 1 1 555553 567787764321111 01111111 23344444332 24566666654
Q ss_pred cEEEEECC---CCceeEEEe--cc---ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeeEE
Q 011916 315 QLLVWNQH---SQQPTLRLT--EH---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQVCNL 384 (475)
Q Consensus 315 ~I~iwd~~---~~~~~~~~~--~h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l 384 (475)
.-+++.+. ..+.+..+. +. ...+.+-.+. ++. ++=. ....|++.+...++...... .+..|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~-ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGR-IVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTE-EEEE----ESSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCe-EEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 34455543 233332221 11 1122222222 222 3333 35778899888777776653 34445555
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-C----CCcceEEEEECC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-G----HSLRVLYLATSP 432 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~----h~~~V~~l~~sp 432 (475)
+... .++++ ...++.+.++.+.......... . ....|.|+...|
T Consensus 455 ~~~~--~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SIND--PQVLV--ALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESS--SEEEE--EE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EECC--CEEEE--EEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5543 45555 3457888888887665543322 1 456788887765
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.97 E-value=14 Score=33.28 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=82.4
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC---eEEEE-ECCC----Cceee-
Q 011916 305 RELASGGNDNQLLVWNQH--SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR---CIRFW-NTSN----GHQLN- 373 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~---~I~iw-d~~~----~~~~~- 373 (475)
..|..+...+.|.+|++. ..+.+..|.. -+.|..++++..|+++++.-.-.... .+|+| |.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444555789999998 3345556654 48899999999999998875422223 56665 2221 11111
Q ss_pred ----------------------eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEec----C-
Q 011916 374 ----------------------SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLT----G- 420 (475)
Q Consensus 374 ----------------------~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~----~- 420 (475)
++....++.+++..|-...|++ | .++.+.+|.+..... +..+. .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--G-CGNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--E-cCCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1123346778888886666666 4 478899998754322 11111 1
Q ss_pred CCc-ceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 421 HSL-RVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 421 h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
|.+ .+..+++. +.++|..+ |-.+++.++.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 111 24556663 55777765 4467777663
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.91 E-value=1.6 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.7
Q ss_pred cceeEEEECCCCC--cEEEEecCCCCCeEEEEECCC
Q 011916 335 AAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 335 ~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++|.++.|+|... .|++... .-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 4689999998655 4555544 689999999985
No 466
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.79 E-value=23 Score=35.32 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCeeeEEec-CCCC
Q 011916 187 GTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-----------QVQVWDGTQCKRVRTFG-GHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-----------~v~iwd~~~~~~~~~~~-~h~~ 252 (475)
+..++++|+.. .+...+..+............-++.+.++|+.+. .+..||..+.+-...-. ....
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~ 128 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG 128 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc
Confidence 45678888764 3344433322111111111223567777776532 47778877654332211 1111
Q ss_pred --ceEEEE-eCCCEEEEEeCC
Q 011916 253 --RAGVLA-WNSRILSSGSRD 270 (475)
Q Consensus 253 --~v~~l~-~~~~~l~sgs~d 270 (475)
...+++ .++.+.+.|+.+
T Consensus 129 ~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 129 LAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ccceEEEEeeCCEEEEECCCC
Confidence 122333 477888888764
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.76 E-value=31 Score=36.78 Aligned_cols=239 Identities=11% Similarity=0.126 Sum_probs=119.5
Q ss_pred eEEecCCC-CEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCe-EEEEECCCC---
Q 011916 172 NLVDWSSQ-NVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQ-VQVWDGTQC--- 241 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~-v~iwd~~~~--- 241 (475)
.+..++++ +.+-.|- +..|.-|=+ .+.+.+-...+....-|.|+..-.. .++.++|-.++. -++-.+..+
T Consensus 31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~ 110 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGS 110 (670)
T ss_pred eecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcc
Confidence 33355554 4444444 344433333 2445555555566777888776432 245566644433 343332222
Q ss_pred --------eeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC-ccEEEec-CccC------CEEEEEEcC
Q 011916 242 --------KRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS-DYICKLA-GHKS------EVCGLKWSH 302 (475)
Q Consensus 242 --------~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-~h~~------~V~~l~~s~ 302 (475)
+...+++ .-...|..+.+ ++..+++...+|.|.+||..... ..+..+. .+.. -|.....-.
T Consensus 111 ~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~ 190 (670)
T PF10395_consen 111 TEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN 190 (670)
T ss_pred ccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence 1111111 13567777777 46899999999999999993111 1111111 1111 122222111
Q ss_pred CCCEEEEEeC-C---CcEEEEECC-CCceeEEEe---ccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 303 DDRELASGGN-D---NQLLVWNQH-SQQPTLRLT---EHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 303 ~~~~lasg~~-D---g~I~iwd~~-~~~~~~~~~---~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
...++++.+. + -..+++.+. ....+..+. .+........|+- +|. |+.- .+++|.+|++...+..+
T Consensus 191 ~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l----~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 191 GKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL----SKKTISSYSIPNFQIQK 265 (670)
T ss_pred CCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE----eCCEEEEEEcCCceEEE
Confidence 2234444333 2 246677771 222233332 1222223333332 444 4443 47899999998888777
Q ss_pred eecCC-------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 374 SVDTG-------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 374 ~~~~~-------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++... ..+.++.- |..+.++. + .++.|++.|+.-...+.++.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~-~s~nRvLL--s-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKP-PSPNRVLL--S-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEechhhccccccceEeec-CCCCeEEE--E-cCCEEEEEeehhhhhhhhhh
Confidence 76533 23334432 33344444 2 57899999986555554444
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.57 E-value=25 Score=35.39 Aligned_cols=108 Identities=8% Similarity=0.161 Sum_probs=66.5
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-----PTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-----~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.....+.++.|.+++..++++ .+|.+.. ....++ ....... ....+.++.|.+++. ++++| ..|.+.
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G---~~G~v~ 351 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG---GSGILL 351 (398)
T ss_pred CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE---CCCcEE
Confidence 345568899999998877766 4565443 333332 1222211 123588899998877 66666 477666
Q ss_pred EEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 363 FWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 363 iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
... ..|+.-.... .......+.|.++++-+++ | .+|.|.-|
T Consensus 352 ~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred EeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 553 4455433332 2456889999888777776 5 67776554
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.49 E-value=17 Score=39.02 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=65.2
Q ss_pred EEEEecCCCCCeEEEEECCC-------C-------------ceeeeecCCCCeeEEEEc--CCCCeEEEEEecCCCeEEE
Q 011916 349 LLASGGGTADRCIRFWNTSN-------G-------------HQLNSVDTGSQVCNLAWS--KNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~-------~-------------~~~~~~~~~~~v~~l~~s--~~~~~l~~~~g~~dg~I~i 406 (475)
+++.+. .||.|.+|.+.+ . ++...+..+..++.++++ ...+.||+ +.....|.|
T Consensus 116 VLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV--SsNs~~VTV 191 (717)
T PF08728_consen 116 VLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV--SSNSQEVTV 191 (717)
T ss_pred EEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE--ecCCceEEE
Confidence 444443 899999997631 0 122334456789999998 77788887 666677777
Q ss_pred EECCCC-ceEEEe--cCCCcceEEEEECCCC---C---EEEEEeCCCCEEEEec
Q 011916 407 WKYPSM-AKVSTL--TGHSLRVLYLATSPDG---Q---TIVTGAGDETLRFWNV 451 (475)
Q Consensus 407 wd~~~~-~~~~~l--~~h~~~V~~l~~spdg---~---~l~s~s~Dg~I~iW~~ 451 (475)
|-+... +..... ..|..-|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 111111 1255568888887643 2 7888888999999888
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.42 E-value=20 Score=34.18 Aligned_cols=201 Identities=14% Similarity=0.118 Sum_probs=113.2
Q ss_pred eEEEEeCC--CEEEEEeCCCcEEEEECCC------CCccEEEecC-----ccCCEEEEEEcCCCC------------EEE
Q 011916 254 AGVLAWNS--RILSSGSRDRNILQHDLRV------SSDYICKLAG-----HKSEVCGLKWSHDDR------------ELA 308 (475)
Q Consensus 254 v~~l~~~~--~~l~sgs~dg~I~iwd~~~------~~~~~~~~~~-----h~~~V~~l~~s~~~~------------~la 308 (475)
-+.|++++ .+-++...-+...+||... ....+..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 34566653 5555666667888998861 2222333332 234577888875332 367
Q ss_pred EEeCCCcEEEEECCCCce-----eEEEecc-ccc-eeEEEEC--CCCCcEEEEecCCCCCeEEEEECCCCceeee--e--
Q 011916 309 SGGNDNQLLVWNQHSQQP-----TLRLTEH-TAA-VKAIAWS--PHQSSLLASGGGTADRCIRFWNTSNGHQLNS--V-- 375 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~-----~~~~~~h-~~~-v~~l~~s--p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~-- 375 (475)
.+++||+|.-|...-... ...+... ... -+.+++. ..+.+|+++-- ..++|.+||-.-.+.... +
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccC
Confidence 788999999998543221 1223221 233 3556655 34677777754 789999998543322110 1
Q ss_pred ---cCCCC---eeE---------EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECC------
Q 011916 376 ---DTGSQ---VCN---------LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSP------ 432 (475)
Q Consensus 376 ---~~~~~---v~~---------l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp------ 432 (475)
..+.. |.. ..-.++...=+. |..-|.|-+||. .+..+..+. +.-...+.|+..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~--G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA--GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCccccccc--CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00111 111 111122222122 444578999996 466666663 2334567787765
Q ss_pred CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.|.+|+--=.||+|..+|..++.....
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeee
Confidence 467777666799999999987764433
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.41 E-value=4.5 Score=40.35 Aligned_cols=157 Identities=20% Similarity=0.101 Sum_probs=94.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EEe-cCCCC----ceE-EEE--eCCCEEEEEeCCCcEEEE-EC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-RTF-GGHQT----RAG-VLA--WNSRILSSGSRDRNILQH-DL 278 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-~~~-~~h~~----~v~-~l~--~~~~~l~sgs~dg~I~iw-d~ 278 (475)
...|..+-..|||+.|.+-+. .++.|+++.+.... +.+ ....+ .|+ .+. -.+.-|+++..||.|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 466778889999999888776 68889987654321 111 11111 122 111 135678889999999888 55
Q ss_pred CCCCcc----EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 279 RVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 279 ~~~~~~----~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+..+.. ++.++-...++..+.--.+.+-+++-+..|++.++.....+.+.. ..--..+.-++++|.+.+++.-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-- 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee--
Confidence 533321 122222223333333222344566777778887776554444332 2223366788999999988874
Q ss_pred CCCCCeEEEEECCCCce
Q 011916 355 GTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~ 371 (475)
..|.|+++.+.+..+
T Consensus 376 --~~gki~~~~l~Nr~P 390 (733)
T COG4590 376 --DQGKIRLAQLENRNP 390 (733)
T ss_pred --cCCceEEEEecCCCC
Confidence 568899998876543
No 472
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.35 E-value=30 Score=36.05 Aligned_cols=228 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe---eeEEecCC-CCceEEEEe-CCC--EEEEEeCCCcEEEEECCCCC-ccEEEec
Q 011916 218 TREGSYISVGTNLGQVQVWDGTQCK---RVRTFGGH-QTRAGVLAW-NSR--ILSSGSRDRNILQHDLRVSS-DYICKLA 289 (475)
Q Consensus 218 spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~h-~~~v~~l~~-~~~--~l~sgs~dg~I~iwd~~~~~-~~~~~~~ 289 (475)
..++..++.+..+|.+....+.... .+..+ +. .....++++ ... +|+.|+.-|.=.++.+.... ..+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~- 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL- 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence 3467889999999999988776543 12222 22 455566776 445 99999876665555544222 222223
Q ss_pred CccCCEEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCce--eEEEecc--ccceeEEEECC-CCCcEEE
Q 011916 290 GHKSEVCGLKWSHD----DR------ELASGG---NDNQLLVWNQHSQQP--TLRLTEH--TAAVKAIAWSP-HQSSLLA 351 (475)
Q Consensus 290 ~h~~~V~~l~~s~~----~~------~lasg~---~Dg~I~iwd~~~~~~--~~~~~~h--~~~v~~l~~sp-~~~~ll~ 351 (475)
..-++|.++++-.. .. .|++++ .+|.+++..-.-+-. ....... -..++.+.... ++.+++.
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 34567888888531 11 444443 467888774321111 1111112 23344444433 2455666
Q ss_pred EecCCCCCeEEEEECC---CCceeeee-----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CC
Q 011916 352 SGGGTADRCIRFWNTS---NGHQLNSV-----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HS 422 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~---~~~~~~~~-----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~ 422 (475)
+. ...-+++.+. ..+.+..+ ....+-..+.... ++.++-+ ....|++.+....+....... ..
T Consensus 377 S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQV---t~~~i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 377 SF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQV---TPKGIRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp EE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEE---ESSEEEEEESSSTSEEEEEE-TTS
T ss_pred Ec----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEE---ecCeEEEEECCCCeEEEEEeCCCC
Confidence 53 3444555553 34443222 1222222222222 3344432 246688898887777766543 34
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
..|...+.. +.+++.+..++.+.++.+......
T Consensus 449 ~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 449 SIIVAASIN--DPQVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp ---SEEEES--SSEEEEEE-TTEEEEEEEETTEEE
T ss_pred CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCcee
Confidence 456666663 456666777888999998776553
No 473
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=15 Score=36.76 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=84.9
Q ss_pred EEEeC-CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----
Q 011916 256 VLAWN-SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL---- 328 (475)
Q Consensus 256 ~l~~~-~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~---- 328 (475)
.+-|+ .+..+.+.+.|.+.-|-+...+ -++..-....++|.+|.||+|.+.||+--.|+.|.+++....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 34443 2444444455666666555332 2233333456799999999999999999999999999985443322
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
+.+.....|....|+.... ++.. .+.-+.+|-....+ .++.. .+...|.-..|.++.+.++.+++
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A~i----~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IAFI----TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HhccCcceeEEEEEecCee-EEEE----ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2222345588889987644 4443 35556666654322 22222 24456777788888887776544
No 474
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.28 E-value=2.9 Score=38.27 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=50.5
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEe-------eC------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLC-------DL------GPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~-------~~------~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
+..+.-..+.+++++.+|.+++||+.+++..... .. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3445656678999999999999999988754322 10 2456788888888887666544 58889998
Q ss_pred CCCCe
Q 011916 238 GTQCK 242 (475)
Q Consensus 238 ~~~~~ 242 (475)
..-+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 65443
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.28 E-value=16 Score=32.93 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCC------cEEEE---ECC--CCceeE-
Q 011916 262 RILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDN------QLLVW---NQH--SQQPTL- 328 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg------~I~iw---d~~--~~~~~~- 328 (475)
+.|+.+...+.|.+|++..... ....+. .-+.|..+.++..|++|++--.++ .+++| +.. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 6666667778899999983333 334444 447899999999999999954322 45554 322 111111
Q ss_pred EEec---------------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 329 RLTE---------------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 329 ~~~~---------------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+.+ -...+.+++.+|-...|++. .++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence 1111 23466788888876667775 4789999987543
No 476
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.27 E-value=1.9 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=26.0
Q ss_pred CcEEEEEEcCC-C--CEEEEEeCCCeEEEEECCC
Q 011916 210 DSVCSVQWTRE-G--SYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 210 ~~V~~v~~spd-g--~~la~g~~dg~v~iwd~~~ 240 (475)
+.|.+++|+|+ + ++|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46889999984 4 5888888889999999885
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.19 E-value=6.8 Score=41.32 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CCccEE-Eec---------------------CccCCEEEEEEcC----CCCEEEEE
Q 011916 260 NSRILSSGSRDRNILQHDLRV---SSDYIC-KLA---------------------GHKSEVCGLKWSH----DDRELASG 310 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd~~~---~~~~~~-~~~---------------------~h~~~V~~l~~s~----~~~~lasg 310 (475)
++..++.+..||.+....... .+.... ... .....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567777777888877776653 111111 110 0123455666666 67799999
Q ss_pred eCCCcEEEEECCCCceeEEE
Q 011916 311 GNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~ 330 (475)
+.|++|++||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999986654
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.84 E-value=24 Score=37.98 Aligned_cols=216 Identities=12% Similarity=0.200 Sum_probs=106.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC------CCCceEEEEeCC--CEEEEEeCCCcEEEEECCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG------HQTRAGVLAWNS--RILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~------h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~ 280 (475)
.+.|.+.+||.|.+.+++...+..|.+++-. ...+....- .-+.-..+.|.. ..+ - +..-..++.|...
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ise~~L~~~dl~ef~khi~VgWgkketqf-r-gk~~raqlrdptm 188 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY-FDPISEYHLKKSDLVEFGKHIRVGWGKKETQF-R-GKGARAQLRDPTM 188 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc-ccccchhhcchhHHHHhccceEeeecccchhc-c-ccchhhhccCCCC
Confidence 5678889999999988888888889888722 111111110 001112233321 000 0 0000111222111
Q ss_pred CCc----cEEEecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 281 SSD----YICKLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 281 ~~~----~~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+.. .+..+..| =.-|.|-.|..+.+++... ..+++|.-. |..-..-....+.-..+.|-|.|..+++.
T Consensus 189 p~~vD~G~l~avd~~---k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati 264 (1243)
T COG5290 189 PYMVDYGDLFAVDTN---KKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATI 264 (1243)
T ss_pred cccccccceeEeeCC---ceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeee
Confidence 000 01111111 1235566666666665432 235555422 11111111123333568999999966665
Q ss_pred ec--CCCCCeEEEEEC---CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEE
Q 011916 353 GG--GTADRCIRFWNT---SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLY 427 (475)
Q Consensus 353 g~--Gs~d~~I~iwd~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 427 (475)
++ .+....+.++.- +.|+.-........+..++|+-....++++ ..+.|.+|-..+........-.-..+..
T Consensus 265 ~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~---~~n~~~lwttkNyhWYLK~e~~ip~~s~ 341 (1243)
T COG5290 265 GTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA---EGNLLKLWTTKNYHWYLKVERQIPGISY 341 (1243)
T ss_pred ccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh---hcceEEEEEccceEEEEEEeecCCCcce
Confidence 42 111234556652 223332233344556777887777666663 4678999988776654444444455777
Q ss_pred EEECCCC
Q 011916 428 LATSPDG 434 (475)
Q Consensus 428 l~~spdg 434 (475)
+.|+|..
T Consensus 342 vkwhpe~ 348 (1243)
T COG5290 342 VKWHPEE 348 (1243)
T ss_pred eeecccc
Confidence 8888853
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.81 E-value=12 Score=36.39 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=45.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeeeEE--ec-CCCC----ceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG----QVQVWDGTQCKRVRT--FG-GHQT----RAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg----~v~iwd~~~~~~~~~--~~-~h~~----~v~~ 256 (475)
..++.||..+.+...+..+.........+...++++.+.|+.++ .+.+||..+.+-... +. .+.. ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 46899999988876654332211122222334677888887654 356888877543221 11 0100 1222
Q ss_pred EEe-CCCEEEEEeCC
Q 011916 257 LAW-NSRILSSGSRD 270 (475)
Q Consensus 257 l~~-~~~~l~sgs~d 270 (475)
+.. ++.+++.|+.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 333 56788888876
No 480
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.67 E-value=23 Score=41.31 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=60.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCC-----CCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC------e--eeEE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGP-----GDSVCSVQWTREGSY-ISVGTNLGQVQVWDGTQC------K--RVRT 246 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~-----~~~V~~v~~spdg~~-la~g~~dg~v~iwd~~~~------~--~~~~ 246 (475)
.|+...||.||- .++..+.-+.-++ -..+.+...+++|.. +.++.....+++|++... + ....
T Consensus 407 ~Ls~qgdG~lYA---k~~~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~ 483 (1774)
T PF11725_consen 407 SLSRQGDGKLYA---KDDDTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQ 483 (1774)
T ss_pred hhcccCCCceEe---cCCCceeecCCCCcchhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeee
Confidence 566677787774 2222222111111 245677778889987 556666666799998653 1 1223
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 279 (475)
+.+......++...++.|+++..+|.++.-++.
T Consensus 484 L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 484 LADGKAQAQSVGLSNDRLFVADSEGKLYSADLP 516 (1774)
T ss_pred ccCCchhhhheeecCCeEEEEeCCCCEEecccc
Confidence 334444777788888889999999998887775
No 481
>PLN02153 epithiospecifier protein
Probab=88.27 E-value=27 Score=34.19 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=45.4
Q ss_pred eEEEEECCCCeeeEE--ecC-CC---CceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCccEE--Eec----CccCC
Q 011916 232 QVQVWDGTQCKRVRT--FGG-HQ---TRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSDYIC--KLA----GHKSE 294 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~--~~~-h~---~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~----~h~~~ 294 (475)
.+.+||+.+.+-... +.. .. .....+..++.+++.|+.+ ..+.+||.... .... .+. .....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN-EWTFLTKLDEEGGPEART 129 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC-EEEEeccCCCCCCCCCce
Confidence 466777666533221 110 01 1233455677888888754 25778887632 2211 110 00111
Q ss_pred EEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCc
Q 011916 295 VCGLKWSHDDRELASGGND-----------NQLLVWNQHSQQ 325 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~D-----------g~I~iwd~~~~~ 325 (475)
-.+++ .-++++++.|+.+ ..|.+||..+.+
T Consensus 130 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 130 FHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred eeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 11222 2356677777753 247788887654
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.70 E-value=15 Score=30.52 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=70.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc--------eeEEEeccccceeEEEECC----CCCcEEEEecCCCCCeEEEEEC
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHSQQ--------PTLRLTEHTAAVKAIAWSP----HQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~~~--------~~~~~~~h~~~v~~l~~sp----~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
+|......|++++.-|+|.|++..... .+..+ .-...|++|+--+ ++.-++..| ....|..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEEc
Confidence 455555678888888999999876332 22222 3456677776543 334566666 4889999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.....+...+....+.++.+-.- ...++.+ | .+-.|.-||....+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcEEEEEe
Confidence 98877766666677777766431 2233332 3 3455666666555444433
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.61 E-value=12 Score=35.72 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=69.9
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEec-----cccceeE
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG------NDNQLLVWNQHSQQPTLRLTE-----HTAAVKA 339 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~------~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~ 339 (475)
..|++||.. ..+....-.+-.+.|.+|.|..+.++++.|. ....+..||+.+..-. .+.. -.++|..
T Consensus 16 ~~lC~yd~~-~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTD-NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECC-CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 468899987 4444444445677899999986666666664 3557888998876532 2222 2467888
Q ss_pred EEEC-CCCCcEEEEecC-CCCCeEEEEECCCCceeee--ecCCCCeeEEEEcC
Q 011916 340 IAWS-PHQSSLLASGGG-TADRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSK 388 (475)
Q Consensus 340 l~~s-p~~~~ll~sg~G-s~d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~ 388 (475)
+.+. .++..+.+.|.. ..+..|..||=.+...+.. +.....|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 8774 344446655431 1244577787655555544 22344566665443
No 484
>PLN02193 nitrile-specifier protein
Probab=86.64 E-value=36 Score=35.16 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred CeEEEEECCCCcEEEEeeCC---CCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEe-----cCCCCce
Q 011916 188 TCVYLWTASNSKVTRLCDLG---PGDSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVRTF-----GGHQTRA 254 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~---~~~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~~~-----~~h~~~v 254 (475)
+.++.+|..+.+..++.... ....-.++. .-++++++.|+.++ .+..||+.+.+-...- .......
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 46889999988776654321 111111222 23566777777543 4678887765433211 0111122
Q ss_pred EEEEeCCCEEEEEeCC----CcEEEEECCC
Q 011916 255 GVLAWNSRILSSGSRD----RNILQHDLRV 280 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~d----g~I~iwd~~~ 280 (475)
.....++++++.++.+ ..+.+||+..
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCcEEEEECCCCCccCceEEEECCC
Confidence 3344577888888765 4588899873
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.53 E-value=8.2 Score=29.63 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=30.7
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
..+|.+.-||..+++....++.-.-...+++++++..++++
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 36789999999998876666555677899999999998885
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.05 E-value=38 Score=33.58 Aligned_cols=192 Identities=10% Similarity=0.065 Sum_probs=102.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEE-EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CCE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGV-LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SEV 295 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V 295 (475)
+| .+.++..+|.|.-.|.++++.+.....-. ..+.. +......|+.++.++.+..+|.+ .+..+-...... -.+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~-~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDAS-TGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECC-CCcEEEEEecCCCeEE
Confidence 44 45566788888888888888664333211 11111 11123458888889988888886 455444444333 111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc---cceeEEEECCCCCcEEEEecCCC--CCeEEEEECCCCc
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT---AAVKAIAWSPHQSSLLASGGGTA--DRCIRFWNTSNGH 370 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~ll~sg~Gs~--d~~I~iwd~~~~~ 370 (475)
..-..-.++ .+..++.++.+...|..+++......... ..+..-....++. +++.. . ++.+.-.|..+|.
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~---~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS---DGYDGILYALNAEDGT 220 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec---CCCcceEEEEEccCCc
Confidence 111222233 44444477899999988888766644321 1111111122222 33321 3 5578888888888
Q ss_pred eeeeecCCCCeeE-----EEEcCCC-----CeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 371 QLNSVDTGSQVCN-----LAWSKNV-----NELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 371 ~~~~~~~~~~v~~-----l~~s~~~-----~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
..........+.. ......+ ..++. +..++.+...+..+++.+-....
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYA--GSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEE--EecCCeEEEEEcCCCceEEEEec
Confidence 8777432211111 1111111 11122 45677788888888888777664
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.97 E-value=34 Score=32.96 Aligned_cols=228 Identities=8% Similarity=-0.001 Sum_probs=104.3
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCc-----------
Q 011916 220 EGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSD----------- 283 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~----------- 283 (475)
++++|+.|+++|...+ ++.. .+..+.+ +...|.++..- +-+++.++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 4468999999995544 4554 3333333 45678888773 33444555555699999842110
Q ss_pred ---cEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--c--eeEEE---ec-cccceeEEEECCCC-CcEE
Q 011916 284 ---YICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQ--Q--PTLRL---TE-HTAAVKAIAWSPHQ-SSLL 350 (475)
Q Consensus 284 ---~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~--~--~~~~~---~~-h~~~v~~l~~sp~~-~~ll 350 (475)
......+|......+..... ...++++....+|.++..... + ....+ .. -..++..+..+++. ..-+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 00112233332222233221 223444555567777654322 1 11110 00 11233333333332 2234
Q ss_pred EEecCCCCCeEEEEECCC--Cceee------eecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--CceEEEec
Q 011916 351 ASGGGTADRCIRFWNTSN--GHQLN------SVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAKVSTLT 419 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~--~~~~~------~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~~~~l~ 419 (475)
+.|. ..+...++++.. ..... ..... .++....+ +++.+|++ + +....+.|... ......+.
T Consensus 169 cvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc---~-~~~~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 169 CIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC---Y-DEFGVFVNLYGKRRSRNPILH 241 (302)
T ss_pred EEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE---E-CcEEEEEeCCCCccccceEEE
Confidence 4442 222344444422 11000 00111 23333333 34444444 3 34444455443 11111222
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
-...+.++++. ..+|+.-. +..|.|+++.++...+.+.
T Consensus 242 -w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 -WEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred -cCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 23345667775 45676665 4559999999988766554
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.88 E-value=13 Score=34.52 Aligned_cols=145 Identities=7% Similarity=0.069 Sum_probs=0.0
Q ss_pred EEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--------
Q 011916 191 YLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-------- 259 (475)
Q Consensus 191 ~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-------- 259 (475)
.+||+.+++...+.. ..+--..+-.+-+||++|.+|+. ...+++++..+................=.|
T Consensus 49 ~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Q ss_pred CCCEEEEEeCCC-cEEEEECCCCCccEEEe--------cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 260 NSRILSSGSRDR-NILQHDLRVSSDYICKL--------AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 260 ~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
||+.|+.|+.+. +...|.-+........+ .....----+...|+|++++.+..+..|. |..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~--d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY--DYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE--eCCCCeEEeeC
Q ss_pred ecccccee
Q 011916 331 TEHTAAVK 338 (475)
Q Consensus 331 ~~h~~~v~ 338 (475)
..-.+.++
T Consensus 206 P~lPg~~R 213 (243)
T PF07250_consen 206 PDLPGGPR 213 (243)
T ss_pred CCCCCCce
No 489
>PLN02193 nitrile-specifier protein
Probab=85.68 E-value=47 Score=34.29 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCeeeEEec-C-CC----CceEEEEeCCCEEEEEeCCC-----cEEEEECCCC
Q 011916 220 EGSYISVGTNL-------GQVQVWDGTQCKRVRTFG-G-HQ----TRAGVLAWNSRILSSGSRDR-----NILQHDLRVS 281 (475)
Q Consensus 220 dg~~la~g~~d-------g~v~iwd~~~~~~~~~~~-~-h~----~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~ 281 (475)
++.+++.|+.+ ..+.+||+.+.+-...-. + .. .....+..++.+++.|+.++ .+.++|+..
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t- 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT- 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC-
Confidence 45566666643 247788887754332110 1 10 12233445677778887653 577888873
Q ss_pred CccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-----ccccceeEEEECCCC
Q 011916 282 SDYICKLAG-----HKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 282 ~~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~ 346 (475)
.... .+.. ....-.++.. -++++++.|+.++ .+..||+.+.+-...-. ........+.+ ++
T Consensus 254 ~~W~-~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~g 329 (470)
T PLN02193 254 NEWK-LLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QG 329 (470)
T ss_pred CEEE-EcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CC
Confidence 2221 1111 1111112222 2566777776543 46778877654321100 00111111222 34
Q ss_pred CcEEEEecCC--CCCeEEEEECCCCce
Q 011916 347 SSLLASGGGT--ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 347 ~~ll~sg~Gs--~d~~I~iwd~~~~~~ 371 (475)
+ +++.++.. .-..+.+||+.+.+-
T Consensus 330 k-iyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 330 K-VWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred c-EEEEECCCCCccCceEEEECCCCEE
Confidence 4 66665411 125689999887653
No 490
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.35 E-value=39 Score=33.08 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=40.9
Q ss_pred CeEEEEECC--CCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeeEEe-c--CC
Q 011916 188 TCVYLWTAS--NSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNL-----------GQVQVWDGTQCKRVRTF-G--GH 250 (475)
Q Consensus 188 ~~V~lw~~~--~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~d-----------g~v~iwd~~~~~~~~~~-~--~h 250 (475)
..++.+|+. +.+...+..+.. ...-.+++ .-++++.++|+.+ ..+..||..+.+-...- . ..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~ 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAA-AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEE-EECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc
Confidence 567778863 333444433321 11111222 2367777787753 24777887765433321 1 11
Q ss_pred CCceEEE-EeCCCEEEEEeCC
Q 011916 251 QTRAGVL-AWNSRILSSGSRD 270 (475)
Q Consensus 251 ~~~v~~l-~~~~~~l~sgs~d 270 (475)
......+ ..++++.+.|+.+
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcC
Confidence 1112223 3577888888764
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.29 E-value=23 Score=40.10 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=42.6
Q ss_pred ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.+..++.+..+.......+.. .-+.+.+|+.........+...+... ++++..+++ +..||.+.+||...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~--~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILIGF----NRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVS--YHTDGSYAFWDVSS 265 (993)
T ss_pred ccccccceeeeecCCCcceee----eeeeeeehhcccccchhhcccccccC----ccCCceEEE--EEecCCEEeeecCC
Confidence 345555555554444433332 45666666655444433332222111 777888888 77899999999887
Q ss_pred Cce
Q 011916 412 MAK 414 (475)
Q Consensus 412 ~~~ 414 (475)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 644
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.23 E-value=51 Score=34.28 Aligned_cols=285 Identities=16% Similarity=0.088 Sum_probs=138.0
Q ss_pred eccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 159 VLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 159 ~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
++..+....|..++.+.-+-+.-+-+|.+..|++.+.++.+.......-..+.|..+.=..+| ++.+|+.+|..+.--.
T Consensus 196 alql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~ 274 (671)
T COG3292 196 ALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLP 274 (671)
T ss_pred EEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEecC
Confidence 344443344444444544445567777888889998887554444332334555555444444 5788888775543322
Q ss_pred CCCeeeEEecCCC--CceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC-EEEEEEcC--CCCEEEEEeC
Q 011916 239 TQCKRVRTFGGHQ--TRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE-VCGLKWSH--DDRELASGGN 312 (475)
Q Consensus 239 ~~~~~~~~~~~h~--~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~s~--~~~~lasg~~ 312 (475)
..+-.....+.|. ..|..+.-| ..-|-+++.+|.+.+-+-. ......+....+. +..++.+| .+..+-....
T Consensus 275 rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~--w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns 352 (671)
T COG3292 275 RQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD--WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS 352 (671)
T ss_pred CCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch--hhheeeeecCCCchhhhhccCchhcccceeeccc
Confidence 2222222222232 234444444 3456666666665554332 1111111111111 11111111 1112222222
Q ss_pred CCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec--CCCCeeEEEEcC
Q 011916 313 DNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVD--TGSQVCNLAWSK 388 (475)
Q Consensus 313 Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~--~~~~v~~l~~s~ 388 (475)
-|.+.+-+-.++..+..... ....|+.+.+..++..-+.+ ..+-+..|+..+ +..+.... ..+.|+.+.=.|
T Consensus 353 ~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs----~q~GLsrl~n~n~~avlde~agl~ss~V~aived~ 428 (671)
T COG3292 353 IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS----MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP 428 (671)
T ss_pred cceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe----cccchhhhccCCcccccccccCCcccceeeeeecC
Confidence 23344444444544433221 23445666666655533332 454566666666 44444432 457788888899
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEec--C---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--G---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++ |.. |..+|.++. +.+.++....+. . ....|..+.+.++|+.-+. +.+| |..|+-.....
T Consensus 429 dns-LWI--GTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a-~g~g-va~~~sq~~~~ 495 (671)
T COG3292 429 DNS-LWI--GTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA-AGSG-VAAWESQRRMF 495 (671)
T ss_pred CCC-EEE--eccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE-ecce-eeeecccccee
Confidence 988 444 666765543 323322222221 1 2344677888899875443 3344 56776554433
No 493
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.15 E-value=1.4 Score=47.45 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=27.5
Q ss_pred EEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 295 VCGLKWSH---DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 295 V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+.-+.|.| +.-++..+-.++.|++..+..... ..+..|...+..++|-
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHH
Confidence 34445554 556777777778877766554322 2334466666665543
No 494
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.15 E-value=8.7 Score=40.50 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCCEEEEEcCCeEEEEECCC----CcEEEEeeCC---------------------CCCcEEEEEEcC----CCCEEEEE
Q 011916 177 SSQNVLAVGLGTCVYLWTASN----SKVTRLCDLG---------------------PGDSVCSVQWTR----EGSYISVG 227 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~----~~~~~~~~~~---------------------~~~~V~~v~~sp----dg~~la~g 227 (475)
++..++.+..+|.+....... +......... ....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455677777788777766553 2221111111 123456666766 77899999
Q ss_pred eCCCeEEEEECCCCeeeEEec
Q 011916 228 TNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.|+++++||+.+++++.++.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977654
No 495
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.46 E-value=14 Score=41.86 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=82.5
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCeee-------
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT--------REGSYISVGTNLGQVQVWDGTQCKRV------- 244 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s--------pdg~~la~g~~dg~v~iwd~~~~~~~------- 244 (475)
+-+=.+-|+.+++|+.+++.....++ +....|..|..- |.=+++.+-+.--.|.|+-+.-.+..
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 44556779999999999965555554 444556555532 22234444333345666654321111
Q ss_pred --EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC----c-----------------cEEEec-CccCCEEEE
Q 011916 245 --RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS----D-----------------YICKLA-GHKSEVCGL 298 (475)
Q Consensus 245 --~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~----~-----------------~~~~~~-~h~~~V~~l 298 (475)
-++......|.|+.. +|++++ +|+||.|.-.-..... . .+..+. .+..+|..|
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 111223456778875 455555 4556644322111110 0 011223 567789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.....-+.+.+-+..++|.+||+..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9988888999999999999999975
No 496
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.42 E-value=22 Score=29.50 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=66.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCe--------eeEEecCCCCceEEEEe---C----CCEEEEEeCCCcEEEEEC
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCK--------RVRTFGGHQTRAGVLAW---N----SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~l~~---~----~~~l~sgs~dg~I~iwd~ 278 (475)
.-.|......|++++.-|.|.|++..... .+..+. -...|++|+- . .+.|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566666789999999999999876432 223332 3456666654 2 35666665 467899999
Q ss_pred CCCCccEEEecCccCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEE
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSH----DDRELASGGNDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~----~~~~lasg~~Dg~I~iwd~~~~~~~~~ 329 (475)
........ +.-...|.++.+-. +..++++|+ ...|.-||....+...+
T Consensus 81 ~~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhh--hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 85443322 22335577776632 233455554 46777777665554444
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.07 E-value=5.9 Score=24.98 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=28.6
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
|+++.|+++ ...++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~-~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVT-NSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEE-eCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 567777775 456889999999998888777653 22334444
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.88 E-value=25 Score=33.46 Aligned_cols=88 Identities=17% Similarity=0.352 Sum_probs=57.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEecC-----CCCceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT------NLGQVQVWDGTQCKRVRTFGG-----HQTRAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~------~dg~v~iwd~~~~~~~~~~~~-----h~~~v~~ 256 (475)
..|++||..+.+....-. +-.+.|+++.|..+.++++.|. ....+..||..+..-. .+.+ -.+.|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 469999999888766654 4568999999997777777764 3456888998776432 2332 2467888
Q ss_pred EEe---CC-CEEEEEe-CCCc--EEEEE
Q 011916 257 LAW---NS-RILSSGS-RDRN--ILQHD 277 (475)
Q Consensus 257 l~~---~~-~~l~sgs-~dg~--I~iwd 277 (475)
+.+ +. ++.+.|. .++. |..||
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc
Confidence 877 44 3444443 3333 44444
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.30 E-value=4.2 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=22.6
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCC--CeEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTAD--RCIRFW 364 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d--~~I~iw 364 (475)
+......-....|+|||+.|+.+.. .+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 3445566788999999999988875 55 655555
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.88 E-value=82 Score=34.84 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=75.2
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----ceeEEEe-cc----------ccceeEEEECCCCCcEEEEecCC
Q 011916 293 SEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ----QPTLRLT-EH----------TAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 293 ~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~----~~~~~~~-~h----------~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.+...++|+| +...||+....|...|||+... .....+. .+ ...-..|.|.++...|+++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 3577899998 6669999999999999999211 1111111 11 1334588998888878886
Q ss_pred CCCeEEEEECCCCceee---eecCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCC
Q 011916 357 ADRCIRFWNTSNGHQLN---SVDTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~---~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
....+.++|+.+..... .-.....|..+.-++. +..++. ....|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL----TSKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE----ecCeEEEEEccC
Confidence 57899999999876633 2234567888888887 333333 246677778765
Done!