Query 011916
Match_columns 475
No_of_seqs 925 out of 2889
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 1.9E-59 6.3E-64 474.8 47.2 391 53-460 2-402 (420)
2 4aez_A CDC20, WD repeat-contai 100.0 5.8E-55 2E-59 439.0 47.1 385 49-460 1-387 (401)
3 4ggc_A P55CDC, cell division c 100.0 4.7E-50 1.6E-54 388.1 47.2 310 146-455 3-317 (318)
4 3ow8_A WD repeat-containing pr 100.0 1.2E-42 4E-47 339.1 42.5 281 166-452 30-320 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 3.1E-42 1.1E-46 338.6 44.7 276 168-450 55-340 (340)
6 1vyh_C Platelet-activating fac 100.0 5.3E-43 1.8E-47 353.2 39.9 280 167-452 107-410 (410)
7 2pbi_B Guanine nucleotide-bind 100.0 1.8E-40 6.3E-45 328.0 41.9 277 167-450 63-354 (354)
8 3frx_A Guanine nucleotide-bind 100.0 2.7E-40 9.1E-45 322.0 42.2 279 167-454 16-318 (319)
9 3iz6_a 40S ribosomal protein R 100.0 5.7E-41 1.9E-45 334.8 36.0 282 167-455 65-377 (380)
10 4gqb_B Methylosome protein 50; 100.0 6.2E-41 2.1E-45 330.0 35.0 279 169-456 31-334 (344)
11 2ynn_A Coatomer subunit beta'; 100.0 1.2E-39 4.1E-44 315.1 42.6 278 169-453 14-302 (304)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-40 2.5E-44 322.4 38.6 285 170-459 18-341 (345)
13 4ery_A WD repeat-containing pr 100.0 7.6E-39 2.6E-43 309.9 45.0 279 167-452 22-311 (312)
14 2hes_X YDR267CP; beta-propelle 100.0 2.3E-39 7.8E-44 316.9 39.2 281 168-453 14-328 (330)
15 4g56_B MGC81050 protein; prote 100.0 3.2E-40 1.1E-44 326.7 33.4 286 167-459 41-349 (357)
16 2ynn_A Coatomer subunit beta'; 100.0 1.7E-39 6E-44 313.9 37.7 264 201-470 6-277 (304)
17 1erj_A Transcriptional repress 100.0 6.8E-39 2.3E-43 321.2 42.5 281 167-454 63-390 (393)
18 2xzm_R RACK1; ribosome, transl 100.0 1.8E-38 6E-43 312.1 39.1 277 168-454 21-341 (343)
19 1nr0_A Actin interacting prote 100.0 1.4E-38 4.8E-43 337.2 40.2 278 171-457 21-359 (611)
20 1vyh_C Platelet-activating fac 100.0 1.2E-38 4E-43 321.4 36.2 258 207-470 106-387 (410)
21 4aow_A Guanine nucleotide-bind 100.0 1.6E-37 5.5E-42 302.9 42.7 282 167-455 37-339 (340)
22 1nr0_A Actin interacting prote 100.0 3.7E-38 1.3E-42 334.0 40.9 284 167-456 146-570 (611)
23 3zwl_B Eukaryotic translation 100.0 3E-37 1E-41 303.7 43.2 285 167-458 31-351 (369)
24 1sq9_A Antiviral protein SKI8; 100.0 5.7E-38 1.9E-42 313.2 35.4 281 167-454 15-396 (397)
25 1gxr_A ESG1, transducin-like e 100.0 7.1E-37 2.4E-41 297.4 42.1 278 167-452 50-336 (337)
26 3ow8_A WD repeat-containing pr 100.0 1.3E-37 4.5E-42 303.3 35.3 258 207-470 30-297 (321)
27 3dm0_A Maltose-binding peripla 100.0 5.7E-37 2E-41 329.6 43.5 278 167-452 381-692 (694)
28 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-36 5.5E-41 292.0 39.2 282 168-463 18-306 (313)
29 2ymu_A WD-40 repeat protein; u 100.0 1.5E-36 5.2E-41 318.3 42.3 270 168-450 303-577 (577)
30 2pm9_A Protein WEB1, protein t 100.0 6.9E-38 2.4E-42 314.4 30.0 285 170-458 14-342 (416)
31 4g56_B MGC81050 protein; prote 100.0 6.9E-38 2.3E-42 309.9 29.2 290 174-471 11-319 (357)
32 4gqb_B Methylosome protein 50; 100.0 2.8E-37 9.4E-42 304.0 33.3 243 167-413 81-333 (344)
33 3i2n_A WD repeat-containing pr 100.0 3.9E-37 1.3E-41 302.0 33.9 283 167-455 17-355 (357)
34 3k26_A Polycomb protein EED; W 100.0 4.9E-37 1.7E-41 302.1 33.3 278 167-452 17-365 (366)
35 1r5m_A SIR4-interacting protei 100.0 1.9E-36 6.5E-41 303.8 37.0 276 168-452 108-424 (425)
36 1got_B GT-beta; complex (GTP-b 100.0 4.5E-36 1.5E-40 294.7 38.7 258 207-470 53-319 (340)
37 3ei3_B DNA damage-binding prot 100.0 3.8E-36 1.3E-40 299.3 38.0 275 167-453 72-382 (383)
38 2ymu_A WD-40 repeat protein; u 100.0 1E-35 3.4E-40 312.1 41.3 289 168-470 262-556 (577)
39 1k8k_C P40, ARP2/3 complex 41 100.0 5.8E-36 2E-40 295.6 36.8 281 168-455 8-363 (372)
40 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-36 1.3E-40 305.1 36.3 282 169-466 134-427 (435)
41 1gxr_A ESG1, transducin-like e 100.0 3.6E-36 1.2E-40 292.4 33.9 291 170-468 11-311 (337)
42 4ery_A WD repeat-containing pr 100.0 3.6E-35 1.2E-39 284.0 39.6 256 207-468 21-284 (312)
43 4e54_B DNA damage-binding prot 100.0 1.7E-36 5.8E-41 307.9 30.4 284 168-457 119-434 (435)
44 2pbi_B Guanine nucleotide-bind 100.0 5.5E-35 1.9E-39 288.7 38.8 260 207-470 62-333 (354)
45 2pm7_B Protein transport prote 100.0 2.6E-35 8.8E-40 283.7 35.5 243 207-453 7-285 (297)
46 3v7d_B Cell division control p 100.0 6.8E-35 2.3E-39 297.8 39.8 288 171-471 125-441 (464)
47 1r5m_A SIR4-interacting protei 100.0 1.5E-35 5E-40 297.3 33.6 278 169-455 46-363 (425)
48 3vl1_A 26S proteasome regulato 100.0 5.1E-36 1.7E-40 301.6 30.0 276 172-456 60-368 (420)
49 3iz6_a 40S ribosomal protein R 100.0 2.5E-36 8.4E-41 301.2 27.3 260 193-457 51-333 (380)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-34 5.5E-39 293.8 40.6 285 169-470 120-414 (445)
51 2j04_B YDR362CP, TAU91; beta p 100.0 3.2E-36 1.1E-40 311.9 27.9 264 185-454 180-518 (524)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-34 3.8E-39 285.4 36.8 244 207-455 13-285 (345)
53 3gre_A Serine/threonine-protei 100.0 1E-35 3.6E-40 301.4 30.0 277 167-450 62-437 (437)
54 2pm9_A Protein WEB1, protein t 100.0 3.6E-36 1.2E-40 301.9 26.2 281 167-454 66-415 (416)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-34 1.7E-38 290.2 41.2 273 168-455 159-444 (445)
56 3vl1_A 26S proteasome regulato 100.0 7.5E-35 2.6E-39 293.1 34.7 277 170-453 99-419 (420)
57 1erj_A Transcriptional repress 100.0 1.9E-34 6.4E-39 288.9 37.4 255 207-469 62-358 (393)
58 3dwl_C Actin-related protein 2 100.0 2.9E-36 9.8E-41 299.2 23.0 275 169-451 12-377 (377)
59 4a11_B DNA excision repair pro 100.0 5.3E-34 1.8E-38 284.6 39.0 286 167-459 42-371 (408)
60 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-35 1.3E-39 294.4 29.7 281 169-455 35-344 (402)
61 3frx_A Guanine nucleotide-bind 100.0 9E-34 3.1E-38 275.8 37.8 241 207-455 15-269 (319)
62 3dw8_B Serine/threonine-protei 100.0 2E-34 6.9E-39 292.1 34.0 277 165-451 25-444 (447)
63 2hes_X YDR267CP; beta-propelle 100.0 7.4E-34 2.5E-38 277.7 36.5 247 199-454 5-281 (330)
64 3bg1_A Protein SEC13 homolog; 100.0 2.5E-35 8.5E-40 286.4 25.7 244 206-453 10-293 (316)
65 2xzm_R RACK1; ribosome, transl 100.0 2.2E-33 7.6E-38 275.7 38.0 243 207-458 19-290 (343)
66 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-33 3.9E-38 308.5 39.7 283 168-457 13-306 (814)
67 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-33 4.5E-38 274.5 33.9 246 207-457 9-341 (351)
68 1pgu_A Actin interacting prote 100.0 1.3E-33 4.3E-38 297.6 36.2 281 167-458 17-333 (615)
69 3v7d_B Cell division control p 100.0 5.7E-33 1.9E-37 283.5 39.8 274 167-451 161-461 (464)
70 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-33 1.4E-37 317.9 41.4 279 167-453 614-913 (1249)
71 2xyi_A Probable histone-bindin 100.0 2E-33 6.8E-38 284.8 34.2 255 197-454 116-411 (430)
72 3jrp_A Fusion protein of prote 100.0 2E-33 6.7E-38 277.7 33.1 247 202-454 5-288 (379)
73 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-33 7.6E-38 309.2 36.5 296 168-472 58-631 (902)
74 1pgu_A Actin interacting prote 100.0 4.6E-33 1.6E-37 293.4 36.8 275 170-453 208-614 (615)
75 4h5i_A Guanine nucleotide-exch 100.0 1.7E-33 6E-38 279.2 30.7 280 167-456 13-346 (365)
76 1yfq_A Cell cycle arrest prote 100.0 4.3E-33 1.5E-37 271.9 33.0 272 167-451 10-322 (342)
77 3ei3_B DNA damage-binding prot 100.0 1.8E-33 6E-38 280.0 29.2 256 196-461 61-347 (383)
78 1sq9_A Antiviral protein SKI8; 100.0 2.9E-33 1E-37 279.1 30.5 246 207-461 14-330 (397)
79 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-32 4.9E-37 313.5 37.7 295 167-467 656-1048(1249)
80 2pm7_B Protein transport prote 100.0 2.2E-32 7.4E-37 263.2 32.5 238 168-410 9-284 (297)
81 3dwl_C Actin-related protein 2 100.0 3.5E-34 1.2E-38 284.2 19.6 240 208-453 10-281 (377)
82 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4E-32 1.4E-36 276.8 35.3 278 170-454 6-392 (450)
83 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-32 7.3E-37 270.0 32.1 241 207-453 6-274 (372)
84 3dw8_B Serine/threonine-protei 100.0 1.8E-33 6E-38 285.2 24.2 244 207-456 26-376 (447)
85 3i2n_A WD repeat-containing pr 100.0 1.6E-32 5.4E-37 269.1 30.3 255 198-457 7-295 (357)
86 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-32 1.4E-36 296.1 36.1 251 202-459 7-265 (814)
87 3mmy_A MRNA export factor; mRN 100.0 1.6E-31 5.5E-36 262.5 36.8 282 167-458 38-351 (368)
88 3zwl_B Eukaryotic translation 100.0 1.7E-31 5.8E-36 262.5 36.8 246 207-460 30-311 (369)
89 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-32 2.9E-36 259.0 33.1 247 199-460 9-262 (313)
90 3gre_A Serine/threonine-protei 100.0 5.3E-33 1.8E-37 281.5 24.7 262 192-461 47-367 (437)
91 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-33 1.1E-37 289.5 23.2 226 224-454 176-429 (524)
92 3k26_A Polycomb protein EED; W 100.0 1.6E-32 5.5E-37 269.8 27.1 247 203-457 12-322 (366)
93 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-32 1.7E-36 298.5 32.2 198 168-374 17-248 (902)
94 1yfq_A Cell cycle arrest prote 100.0 2.2E-32 7.6E-37 266.8 26.2 252 207-469 9-300 (342)
95 3bg1_A Protein SEC13 homolog; 100.0 2.9E-32 1E-36 264.7 25.8 239 167-410 12-292 (316)
96 4aow_A Guanine nucleotide-bind 100.0 2.5E-30 8.7E-35 251.8 38.1 259 189-455 17-288 (340)
97 3dm0_A Maltose-binding peripla 100.0 6.5E-31 2.2E-35 282.5 37.0 243 207-456 380-635 (694)
98 1l0q_A Surface layer protein; 100.0 3.2E-30 1.1E-34 256.8 39.2 270 181-459 5-281 (391)
99 3bws_A Protein LP49; two-domai 100.0 4E-30 1.4E-34 259.7 40.1 277 171-453 125-432 (433)
100 4e54_B DNA damage-binding prot 100.0 7.1E-32 2.4E-36 273.8 25.7 247 207-459 117-393 (435)
101 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-30 7.7E-35 255.7 33.8 276 168-458 19-341 (355)
102 3jro_A Fusion protein of prote 100.0 2.8E-31 9.5E-36 287.8 27.9 244 207-455 7-287 (753)
103 3jrp_A Fusion protein of prote 100.0 2.6E-30 8.9E-35 255.2 31.9 239 168-412 11-288 (379)
104 1p22_A F-BOX/WD-repeat protein 100.0 7.4E-30 2.5E-34 258.8 35.4 233 207-455 131-367 (435)
105 3f3f_A Nucleoporin SEH1; struc 100.0 6.5E-30 2.2E-34 248.3 32.3 246 168-418 11-344 (351)
106 4aez_A CDC20, WD repeat-contai 100.0 1.7E-29 5.7E-34 253.4 34.8 245 167-419 133-388 (401)
107 4gq1_A NUP37; propeller, trans 100.0 5.5E-30 1.9E-34 256.5 30.9 277 171-452 18-388 (393)
108 3mmy_A MRNA export factor; mRN 100.0 9.8E-30 3.4E-34 249.8 31.5 266 193-469 24-321 (368)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 4.7E-30 1.6E-34 257.3 29.7 239 213-456 38-302 (402)
110 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-30 1.3E-34 252.5 27.6 256 180-452 50-332 (343)
111 4a11_B DNA excision repair pro 100.0 2.5E-30 8.4E-35 258.0 24.5 276 187-469 22-340 (408)
112 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-30 7.7E-35 263.5 24.2 253 169-452 16-296 (588)
113 2w18_A PALB2, fancn, partner a 100.0 1.1E-28 3.7E-33 236.7 33.2 283 161-451 32-355 (356)
114 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-29 1E-33 247.7 30.0 250 192-456 3-274 (355)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-29 9E-34 255.9 28.5 235 210-451 5-337 (450)
116 3jro_A Fusion protein of prote 100.0 2.1E-29 7.1E-34 273.1 29.1 239 167-411 8-285 (753)
117 4gga_A P55CDC, cell division c 100.0 5.3E-28 1.8E-32 244.0 37.1 257 167-430 146-414 (420)
118 2xyi_A Probable histone-bindin 100.0 5E-29 1.7E-33 252.4 28.9 240 167-411 127-410 (430)
119 3bws_A Protein LP49; two-domai 100.0 2.1E-28 7.3E-33 247.0 32.6 270 189-462 102-399 (433)
120 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-29 6.5E-34 247.5 23.7 233 216-457 43-296 (343)
121 4h5i_A Guanine nucleotide-exch 100.0 3.2E-29 1.1E-33 248.5 25.2 238 168-412 73-344 (365)
122 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-29 2.8E-33 252.1 24.3 253 167-442 51-350 (588)
123 1l0q_A Surface layer protein; 100.0 1.9E-26 6.6E-31 229.5 39.5 280 170-456 33-345 (391)
124 4ggc_A P55CDC, cell division c 100.0 2.2E-26 7.4E-31 221.7 34.8 251 211-470 27-291 (318)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.5E-27 1.5E-31 237.1 27.0 291 171-470 65-404 (415)
126 4gq1_A NUP37; propeller, trans 100.0 5.8E-27 2E-31 234.5 24.0 225 181-410 104-388 (393)
127 3u4y_A Uncharacterized protein 99.9 2.4E-24 8E-29 209.3 35.3 267 182-455 14-306 (331)
128 1nir_A Nitrite reductase; hemo 99.9 1.5E-24 5E-29 225.9 35.4 274 176-457 145-462 (543)
129 1ri6_A Putative isomerase YBHE 99.9 2.5E-24 8.5E-29 209.4 31.0 267 181-453 7-308 (343)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.9E-24 2.4E-28 213.7 35.0 247 179-435 144-410 (415)
131 1nir_A Nitrite reductase; hemo 99.9 4.3E-24 1.5E-28 222.4 34.5 285 171-461 181-522 (543)
132 2ojh_A Uncharacterized protein 99.9 7.8E-25 2.7E-29 207.7 25.3 253 186-444 20-293 (297)
133 3vgz_A Uncharacterized protein 99.9 2.1E-23 7.1E-28 204.0 36.0 266 171-444 43-335 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-24 6.3E-29 233.6 29.0 277 170-453 38-413 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-24 3.8E-29 234.6 25.6 280 171-454 19-394 (723)
136 2w18_A PALB2, fancn, partner a 99.9 6.1E-24 2.1E-28 203.8 25.4 231 167-409 85-355 (356)
137 1pby_B Quinohemoprotein amine 99.9 5.6E-23 1.9E-27 199.3 30.8 268 180-460 3-317 (337)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6.9E-23 2.4E-27 220.1 30.6 277 169-455 82-437 (706)
139 3hfq_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 194.6 32.4 263 187-453 15-317 (347)
140 3scy_A Hypothetical bacterial 99.9 2.7E-21 9.3E-26 190.4 32.9 262 187-453 26-337 (361)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-21 5.6E-26 197.4 31.0 281 168-453 36-405 (434)
142 2z3z_A Dipeptidyl aminopeptida 99.9 2.6E-22 9E-27 215.6 25.6 276 172-455 29-393 (706)
143 2ecf_A Dipeptidyl peptidase IV 99.9 6.9E-22 2.4E-26 213.4 28.7 275 170-454 110-460 (741)
144 1k32_A Tricorn protease; prote 99.9 8E-22 2.7E-26 221.1 29.2 278 168-455 52-463 (1045)
145 3vgz_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 187.5 30.5 244 209-460 40-310 (353)
146 1ri6_A Putative isomerase YBHE 99.9 5.1E-21 1.8E-25 185.9 28.7 260 170-434 39-334 (343)
147 3u4y_A Uncharacterized protein 99.9 1.8E-20 6.1E-25 181.8 29.5 234 216-456 4-255 (331)
148 2ojh_A Uncharacterized protein 99.9 4E-21 1.4E-25 182.0 24.2 225 227-458 18-263 (297)
149 1k32_A Tricorn protease; prote 99.9 8.9E-21 3E-25 212.6 29.9 272 170-455 297-639 (1045)
150 1jmx_B Amine dehydrogenase; ox 99.9 3.6E-20 1.2E-24 180.4 30.2 276 174-460 5-332 (349)
151 1xfd_A DIP, dipeptidyl aminope 99.9 8.5E-21 2.9E-25 204.2 26.8 268 170-442 62-429 (723)
152 1z68_A Fibroblast activation p 99.9 1.9E-21 6.4E-26 209.5 21.1 272 173-453 20-391 (719)
153 3pe7_A Oligogalacturonate lyas 99.9 3E-20 1E-24 184.4 26.0 280 169-453 36-382 (388)
154 3o4h_A Acylamino-acid-releasin 99.9 1.1E-20 3.9E-25 198.4 24.0 266 169-453 22-315 (582)
155 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.2E-19 4.2E-24 179.3 30.0 264 188-454 14-342 (365)
156 3o4h_A Acylamino-acid-releasin 99.9 1.5E-20 5E-25 197.5 22.3 234 209-451 21-274 (582)
157 1pby_B Quinohemoprotein amine 99.9 1.6E-19 5.5E-24 174.8 27.2 240 171-422 36-321 (337)
158 3hfq_A Uncharacterized protein 99.8 1.7E-18 5.7E-23 169.3 30.0 242 171-415 42-323 (347)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-19 4.1E-24 183.7 21.7 250 188-451 23-331 (434)
160 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.7E-22 163.8 32.5 256 171-431 52-360 (361)
161 3fvz_A Peptidyl-glycine alpha- 99.8 2.2E-17 7.6E-22 160.7 33.1 242 209-455 23-324 (329)
162 3c5m_A Oligogalacturonate lyas 99.8 8.6E-19 2.9E-23 173.9 22.8 283 170-459 37-388 (396)
163 1z68_A Fibroblast activation p 99.8 5.4E-19 1.8E-23 190.2 20.9 280 171-456 62-446 (719)
164 4a5s_A Dipeptidyl peptidase 4 99.8 1.9E-17 6.4E-22 179.0 30.9 274 173-452 21-397 (740)
165 3pe7_A Oligogalacturonate lyas 99.8 8.9E-18 3E-22 166.5 25.2 262 192-456 14-332 (388)
166 1q7f_A NHL, brain tumor CG1071 99.8 6.3E-16 2.2E-20 146.7 34.3 235 208-454 28-281 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.8 8.2E-18 2.8E-22 181.8 22.1 246 210-460 17-360 (740)
168 3azo_A Aminopeptidase; POP fam 99.8 6.3E-17 2.1E-21 172.3 28.4 278 169-455 24-371 (662)
169 2gop_A Trilobed protease; beta 99.8 5.9E-16 2E-20 151.0 30.2 238 187-452 42-330 (347)
170 1jmx_B Amine dehydrogenase; ox 99.8 4.9E-17 1.7E-21 158.2 22.4 227 214-459 4-290 (349)
171 2oiz_A Aromatic amine dehydrog 99.8 2.5E-16 8.6E-21 155.4 27.6 256 173-435 54-360 (361)
172 2dg1_A DRP35, lactonase; beta 99.8 1.2E-15 4E-20 148.2 32.0 262 171-443 8-300 (333)
173 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-16 8.1E-21 155.6 25.8 240 171-412 42-342 (365)
174 2oiz_A Aromatic amine dehydrog 99.7 2.5E-16 8.7E-21 155.3 25.1 260 187-459 30-342 (361)
175 3c5m_A Oligogalacturonate lyas 99.7 6.5E-17 2.2E-21 160.3 19.4 261 191-457 13-333 (396)
176 2xdw_A Prolyl endopeptidase; a 99.7 1.9E-15 6.5E-20 162.5 30.7 242 210-455 125-416 (710)
177 3azo_A Aminopeptidase; POP fam 99.7 3.1E-16 1.1E-20 167.0 22.2 242 207-452 21-322 (662)
178 2z2n_A Virginiamycin B lyase; 99.7 4.5E-13 1.5E-17 127.1 40.4 273 169-454 15-296 (299)
179 3fvz_A Peptidyl-glycine alpha- 99.7 4.3E-14 1.5E-18 137.3 33.1 234 171-410 26-321 (329)
180 3e5z_A Putative gluconolactona 99.7 2.8E-14 9.5E-19 136.2 31.0 229 208-453 26-284 (296)
181 3dsm_A Uncharacterized protein 99.7 1.1E-14 3.8E-19 141.5 27.9 262 187-460 16-308 (328)
182 1qks_A Cytochrome CD1 nitrite 99.7 1E-13 3.4E-18 144.2 36.3 264 185-454 174-478 (567)
183 1rwi_B Serine/threonine-protei 99.7 1.6E-14 5.5E-19 135.5 27.6 238 211-456 25-267 (270)
184 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-13 3.9E-18 131.0 32.1 230 171-412 32-281 (286)
185 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.9E-18 143.0 34.4 286 170-460 198-545 (567)
186 3no2_A Uncharacterized protein 99.7 9.6E-14 3.3E-18 131.5 28.2 211 220-441 4-231 (276)
187 2gop_A Trilobed protease; beta 99.6 2.4E-14 8.2E-19 139.5 23.9 230 171-424 61-342 (347)
188 3dsm_A Uncharacterized protein 99.6 1.3E-13 4.5E-18 133.9 28.9 236 172-419 47-309 (328)
189 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-14 3.6E-19 156.3 23.1 260 189-455 95-399 (695)
190 2dg1_A DRP35, lactonase; beta 99.6 4.1E-14 1.4E-18 137.1 24.4 237 210-452 6-262 (333)
191 2qc5_A Streptogramin B lactona 99.6 1.5E-11 5E-16 116.6 39.4 270 169-451 20-298 (300)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.6E-13 1.6E-17 128.3 28.6 235 210-453 18-299 (314)
193 1rwi_B Serine/threonine-protei 99.6 3.8E-13 1.3E-17 126.0 26.4 237 169-413 24-266 (270)
194 3no2_A Uncharacterized protein 99.6 8E-13 2.7E-17 125.1 28.5 209 177-395 3-229 (276)
195 2xdw_A Prolyl endopeptidase; a 99.6 4.4E-13 1.5E-17 144.0 29.8 252 156-413 110-416 (710)
196 3e5z_A Putative gluconolactona 99.6 6.5E-13 2.2E-17 126.6 26.7 229 170-413 29-288 (296)
197 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.9E-16 121.6 36.5 257 189-459 48-356 (373)
198 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.6E-16 116.2 35.6 235 208-452 13-254 (299)
199 1yr2_A Prolyl oligopeptidase; 99.6 5.4E-13 1.8E-17 144.0 26.2 241 210-455 163-443 (741)
200 2mad_H Methylamine dehydrogena 99.6 2.9E-11 1E-15 119.4 35.5 241 173-418 70-357 (373)
201 3sjl_D Methylamine dehydrogena 99.5 4.8E-12 1.6E-16 124.2 28.5 263 187-461 58-371 (386)
202 1xip_A Nucleoporin NUP159; bet 99.5 2E-13 7E-18 134.4 18.3 273 170-455 39-384 (388)
203 3sjl_D Methylamine dehydrogena 99.5 4.2E-12 1.4E-16 124.6 27.5 256 174-433 83-384 (386)
204 3hrp_A Uncharacterized protein 99.5 1.2E-11 3.9E-16 123.9 31.0 234 210-452 131-409 (409)
205 2bkl_A Prolyl endopeptidase; m 99.5 5.7E-13 2E-17 142.8 19.4 251 156-414 106-400 (695)
206 2qc5_A Streptogramin B lactona 99.5 3.3E-10 1.1E-14 107.2 36.0 235 208-452 18-259 (300)
207 3g4e_A Regucalcin; six bladed 99.5 8.6E-11 2.9E-15 112.1 32.0 225 209-442 12-261 (297)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.8E-11 1.6E-15 114.1 30.1 232 171-411 20-299 (314)
209 1yr2_A Prolyl oligopeptidase; 99.5 5.5E-12 1.9E-16 136.2 25.2 250 156-413 148-443 (741)
210 3c75_H MADH, methylamine dehyd 99.5 3.9E-11 1.3E-15 119.7 27.4 261 188-460 99-409 (426)
211 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-11 4.2E-16 132.4 25.1 241 208-455 127-407 (693)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 4.1E-10 1.4E-14 109.0 31.5 219 211-442 50-291 (326)
213 1xip_A Nucleoporin NUP159; bet 99.4 3.5E-12 1.2E-16 125.6 16.9 171 210-396 38-231 (388)
214 3c75_H MADH, methylamine dehyd 99.4 4.3E-11 1.5E-15 119.4 24.8 242 173-418 122-409 (426)
215 3dr2_A Exported gluconolactona 99.4 1.4E-10 4.7E-15 111.1 26.4 224 209-447 44-301 (305)
216 3g4e_A Regucalcin; six bladed 99.4 6.2E-10 2.1E-14 106.1 30.3 220 170-398 14-261 (297)
217 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.4E-09 4.7E-14 107.2 31.0 267 178-458 53-342 (376)
218 3hrp_A Uncharacterized protein 99.3 7.5E-10 2.6E-14 110.7 29.1 230 170-409 132-408 (409)
219 1kb0_A Quinohemoprotein alcoho 99.3 1.5E-10 5.3E-15 123.2 24.8 277 179-461 78-515 (677)
220 1mda_H Methylamine dehydrogena 99.3 9.5E-11 3.2E-15 115.0 19.6 262 189-470 47-363 (368)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 5.7E-09 1.9E-13 100.9 31.7 214 171-397 51-290 (326)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.1E-09 1E-13 104.7 29.6 260 174-450 99-375 (376)
223 1yiq_A Quinohemoprotein alcoho 99.3 4.6E-10 1.6E-14 119.8 24.5 277 179-461 71-513 (689)
224 3iuj_A Prolyl endopeptidase; h 99.3 4.7E-10 1.6E-14 120.0 24.3 250 156-414 114-408 (693)
225 2hz6_A Endoplasmic reticulum t 99.3 6.6E-14 2.3E-18 138.4 -5.7 260 178-453 9-279 (369)
226 2qe8_A Uncharacterized protein 99.3 1.8E-09 6.3E-14 105.1 25.5 232 210-447 17-315 (343)
227 1kb0_A Quinohemoprotein alcoho 99.2 2.6E-09 9E-14 113.7 28.2 273 177-453 127-567 (677)
228 3hxj_A Pyrrolo-quinoline quino 99.2 6.1E-10 2.1E-14 107.2 21.1 263 172-456 63-327 (330)
229 2ece_A 462AA long hypothetical 99.2 1.4E-08 4.7E-13 100.5 30.7 250 189-441 44-399 (462)
230 1npe_A Nidogen, entactin; glyc 99.2 2.7E-08 9.1E-13 93.0 31.7 246 182-435 4-263 (267)
231 1yiq_A Quinohemoprotein alcoho 99.2 1.4E-09 4.7E-14 116.1 25.2 258 178-439 121-534 (689)
232 1mda_H Methylamine dehydrogena 99.2 5.3E-10 1.8E-14 109.6 18.3 248 173-431 69-365 (368)
233 3dr2_A Exported gluconolactona 99.2 6.6E-09 2.2E-13 99.3 25.7 224 170-409 46-304 (305)
234 2hz6_A Endoplasmic reticulum t 99.2 1.7E-11 5.8E-16 121.0 6.0 203 220-436 8-217 (369)
235 2iwa_A Glutamine cyclotransfer 99.1 2.9E-08 9.9E-13 92.3 26.4 205 199-412 10-238 (266)
236 1fwx_A Nitrous oxide reductase 99.1 1.5E-09 5.2E-14 110.9 18.4 244 187-455 111-433 (595)
237 2iwa_A Glutamine cyclotransfer 99.1 4.4E-08 1.5E-12 91.1 26.0 195 169-369 21-238 (266)
238 3hxj_A Pyrrolo-quinoline quino 99.1 9E-10 3.1E-14 106.0 15.2 251 179-451 31-282 (330)
239 2ad6_A Methanol dehydrogenase 99.1 6.8E-08 2.3E-12 100.6 27.2 277 179-461 63-502 (571)
240 2qe8_A Uncharacterized protein 99.0 2.5E-08 8.7E-13 97.0 21.8 209 169-395 67-307 (343)
241 2ece_A 462AA long hypothetical 99.0 1.2E-07 4E-12 93.9 26.2 213 181-397 98-399 (462)
242 1kv9_A Type II quinohemoprotei 99.0 7.7E-08 2.6E-12 102.2 26.4 274 178-454 117-553 (668)
243 1kv9_A Type II quinohemoprotei 99.0 1.1E-07 3.7E-12 101.1 26.8 276 179-460 67-495 (668)
244 3mbr_X Glutamine cyclotransfer 99.0 4E-07 1.4E-11 83.0 25.6 194 155-353 7-222 (243)
245 2fp8_A Strictosidine synthase; 99.0 6.4E-07 2.2E-11 86.1 28.7 236 211-454 20-314 (322)
246 1w6s_A Methanol dehydrogenase 99.0 3.2E-07 1.1E-11 95.8 27.3 278 179-460 63-510 (599)
247 1fwx_A Nitrous oxide reductase 98.9 2E-07 6.8E-12 95.4 24.1 195 255-453 90-361 (595)
248 1npe_A Nidogen, entactin; glyc 98.9 1.5E-06 5.3E-11 80.9 28.8 233 221-460 1-245 (267)
249 3nol_A Glutamine cyclotransfer 98.9 4.6E-07 1.6E-11 83.3 23.9 188 200-396 33-242 (262)
250 3nok_A Glutaminyl cyclase; bet 98.9 3E-07 1E-11 84.6 21.9 190 158-353 44-253 (268)
251 4a2l_A BT_4663, two-component 98.9 1.1E-05 3.7E-10 87.6 38.2 269 169-454 263-572 (795)
252 2p4o_A Hypothetical protein; p 98.9 3.7E-06 1.2E-10 80.2 30.3 226 209-444 31-279 (306)
253 1flg_A Protein (quinoprotein e 98.9 7.5E-07 2.6E-11 92.9 27.4 277 179-461 69-524 (582)
254 3v65_B Low-density lipoprotein 98.9 5.3E-06 1.8E-10 81.9 32.1 250 173-430 81-337 (386)
255 2ad6_A Methanol dehydrogenase 98.9 6.7E-07 2.3E-11 93.1 26.5 256 178-439 115-523 (571)
256 3nol_A Glutamine cyclotransfer 98.9 4.6E-07 1.6E-11 83.3 22.2 193 156-353 30-243 (262)
257 3v64_C Agrin; beta propeller, 98.9 8.6E-06 2.9E-10 79.3 32.9 239 173-419 38-283 (349)
258 1ijq_A LDL receptor, low-densi 98.9 1.7E-05 6E-10 75.9 34.5 231 181-419 3-246 (316)
259 4a2l_A BT_4663, two-component 98.9 1.2E-05 4.2E-10 87.1 37.4 270 171-454 175-481 (795)
260 3nok_A Glutaminyl cyclase; bet 98.8 1.1E-06 3.8E-11 80.8 23.3 187 200-396 45-252 (268)
261 3p5b_L Low density lipoprotein 98.8 2.9E-05 9.9E-10 77.0 34.9 245 178-430 82-339 (400)
262 1w6s_A Methanol dehydrogenase 98.8 5.1E-06 1.7E-10 86.6 28.6 255 181-441 124-535 (599)
263 3mbr_X Glutamine cyclotransfer 98.8 6.3E-06 2.1E-10 75.1 25.4 189 199-396 10-221 (243)
264 3sov_A LRP-6, low-density lipo 98.7 2.9E-05 9.8E-10 74.5 29.4 234 179-420 4-247 (318)
265 3v9f_A Two-component system se 98.7 7.2E-05 2.5E-09 80.8 35.2 270 170-453 212-524 (781)
266 3v9f_A Two-component system se 98.7 5.5E-05 1.9E-09 81.7 34.1 271 169-454 258-569 (781)
267 1flg_A Protein (quinoprotein e 98.7 1.1E-05 3.8E-10 84.0 27.4 261 178-442 117-549 (582)
268 3v64_C Agrin; beta propeller, 98.6 8.1E-05 2.8E-09 72.3 31.7 237 213-457 37-279 (349)
269 2xbg_A YCF48-like protein; pho 98.6 0.00043 1.5E-08 66.4 35.3 264 170-450 37-319 (327)
270 3v65_B Low-density lipoprotein 98.6 5.4E-05 1.9E-09 74.6 28.8 237 214-458 81-323 (386)
271 1k3i_A Galactose oxidase precu 98.6 2.9E-06 1E-10 89.9 19.8 250 189-442 220-530 (656)
272 2fp8_A Strictosidine synthase; 98.5 0.00012 4E-09 70.0 29.4 232 171-410 21-312 (322)
273 2xzh_A Clathrin heavy chain 1; 98.5 0.00064 2.2E-08 63.9 35.2 272 174-455 31-334 (365)
274 3m0c_C LDL receptor, low-densi 98.5 0.0002 6.7E-09 77.0 33.4 234 178-419 394-640 (791)
275 4a0p_A LRP6, LRP-6, low-densit 98.5 0.0004 1.4E-08 72.8 34.9 232 178-416 5-242 (628)
276 1ijq_A LDL receptor, low-densi 98.5 0.00049 1.7E-08 65.7 32.5 230 223-458 3-243 (316)
277 1bpo_A Protein (clathrin); cla 98.5 0.0012 4.1E-08 64.5 36.2 272 174-455 30-333 (494)
278 2p4o_A Hypothetical protein; p 98.4 0.00024 8.3E-09 67.4 28.5 219 169-397 32-276 (306)
279 3tc9_A Hypothetical hydrolase; 98.4 0.00012 4.3E-09 73.1 27.3 234 211-452 138-429 (430)
280 3qqz_A Putative uncharacterize 98.4 0.00039 1.3E-08 64.0 27.9 196 207-409 24-251 (255)
281 3sov_A LRP-6, low-density lipo 98.4 0.00024 8.3E-09 67.9 27.5 232 223-458 6-243 (318)
282 2xe4_A Oligopeptidase B; hydro 98.4 2.9E-05 9.9E-10 83.6 23.3 238 169-413 174-460 (751)
283 2xe4_A Oligopeptidase B; hydro 98.4 3.3E-05 1.1E-09 83.2 23.7 239 211-454 175-459 (751)
284 3p5b_L Low density lipoprotein 98.4 0.00087 3E-08 66.2 32.2 233 222-459 84-326 (400)
285 4hw6_A Hypothetical protein, I 98.4 0.00016 5.5E-09 72.3 26.5 234 211-452 140-432 (433)
286 1n7d_A LDL receptor, low-densi 98.3 3.3E-06 1.1E-10 90.0 12.8 244 180-431 378-634 (699)
287 1k3i_A Galactose oxidase precu 98.3 2.9E-05 1E-09 82.2 19.6 259 192-455 170-499 (656)
288 3qqz_A Putative uncharacterize 98.2 0.0033 1.1E-07 57.8 28.9 197 246-449 21-249 (255)
289 3kya_A Putative phosphatase; s 98.2 0.0014 4.8E-08 66.1 28.4 241 211-458 140-480 (496)
290 3tc9_A Hypothetical hydrolase; 98.2 0.00093 3.2E-08 66.7 26.5 228 172-409 140-428 (430)
291 3s94_A LRP-6, low-density lipo 98.2 0.0017 5.7E-08 68.0 29.2 231 180-416 10-248 (619)
292 3amr_A 3-phytase; beta-propell 98.1 0.001 3.5E-08 63.6 24.3 191 221-419 40-272 (355)
293 4hw6_A Hypothetical protein, I 98.1 0.0014 4.9E-08 65.4 26.7 228 171-409 141-431 (433)
294 3m0c_C LDL receptor, low-densi 98.1 0.0045 1.5E-07 66.5 31.6 230 223-458 397-637 (791)
295 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0055 1.9E-07 64.2 31.6 230 223-458 8-242 (628)
296 3amr_A 3-phytase; beta-propell 98.1 0.0012 4.1E-08 63.2 23.4 182 262-452 41-262 (355)
297 2ism_A Putative oxidoreductase 98.0 0.0028 9.6E-08 61.4 25.7 222 210-441 31-333 (352)
298 3a9g_A Putative uncharacterize 97.9 0.014 4.8E-07 56.5 28.1 226 210-441 29-330 (354)
299 3ei3_A DNA damage-binding prot 97.9 0.05 1.7E-06 61.0 35.7 264 182-452 526-872 (1158)
300 3s94_A LRP-6, low-density lipo 97.9 0.0066 2.3E-07 63.5 27.2 225 230-457 17-247 (619)
301 2xbg_A YCF48-like protein; pho 97.8 0.027 9.3E-07 53.6 32.9 232 207-454 33-279 (327)
302 2p9w_A MAL S 1 allergenic prot 97.8 0.0068 2.3E-07 57.5 22.7 196 168-368 12-265 (334)
303 2vpj_A Kelch-like protein 12; 97.8 0.0019 6.6E-08 60.7 19.3 226 220-454 14-279 (301)
304 1xi4_A Clathrin heavy chain; a 97.7 0.0036 1.2E-07 69.8 22.4 275 173-457 29-335 (1630)
305 2p9w_A MAL S 1 allergenic prot 97.7 0.0075 2.5E-07 57.2 21.8 195 251-452 12-264 (334)
306 2g8s_A Glucose/sorbosone dehyd 97.7 0.033 1.1E-06 53.7 27.2 236 210-452 18-351 (353)
307 1n7d_A LDL receptor, low-densi 97.7 0.00017 5.6E-09 76.9 10.8 222 230-455 385-616 (699)
308 2vpj_A Kelch-like protein 12; 97.6 0.0054 1.9E-07 57.5 20.0 217 188-413 31-280 (301)
309 3sre_A PON1, serum paraoxonase 97.6 0.037 1.3E-06 53.3 25.3 163 229-396 81-284 (355)
310 3ii7_A Kelch-like protein 7; p 97.6 0.013 4.4E-07 55.1 21.8 216 187-413 23-274 (306)
311 2xzh_A Clathrin heavy chain 1; 97.6 0.035 1.2E-06 52.3 23.7 196 170-369 108-333 (365)
312 2xn4_A Kelch-like protein 2; s 97.5 0.0081 2.8E-07 56.4 20.0 217 188-414 30-279 (302)
313 3ii7_A Kelch-like protein 7; p 97.5 0.0073 2.5E-07 56.8 19.5 225 221-455 12-274 (306)
314 2xn4_A Kelch-like protein 2; s 97.5 0.0079 2.7E-07 56.5 18.9 227 221-455 16-278 (302)
315 2ism_A Putative oxidoreductase 97.5 0.07 2.4E-06 51.4 25.8 218 171-396 33-332 (352)
316 1bpo_A Protein (clathrin); cla 97.4 0.077 2.6E-06 52.0 24.7 195 171-369 108-332 (494)
317 3s25_A Hypothetical 7-bladed b 97.4 0.088 3E-06 49.5 29.8 240 187-453 36-293 (302)
318 4asc_A Kelch repeat and BTB do 97.4 0.014 4.6E-07 55.3 19.1 182 181-370 7-223 (315)
319 3kya_A Putative phosphatase; s 97.4 0.0092 3.2E-07 60.1 18.4 158 294-453 140-341 (496)
320 3das_A Putative oxidoreductase 97.3 0.12 4.2E-06 49.5 28.8 226 209-441 31-326 (347)
321 2woz_A Kelch repeat and BTB do 97.3 0.044 1.5E-06 51.7 22.3 176 188-370 24-233 (318)
322 3s25_A Hypothetical 7-bladed b 97.2 0.034 1.2E-06 52.4 20.1 215 218-456 22-258 (302)
323 3ott_A Two-component system se 97.2 0.23 7.9E-06 53.0 29.2 228 209-454 21-261 (758)
324 1zgk_A Kelch-like ECH-associat 97.2 0.019 6.5E-07 54.1 18.5 217 188-413 39-289 (308)
325 3ott_A Two-component system se 97.2 0.33 1.1E-05 51.8 36.2 264 170-452 64-351 (758)
326 1zgk_A Kelch-like ECH-associat 97.0 0.022 7.6E-07 53.6 16.7 225 220-454 24-288 (308)
327 3sbq_A Nitrous-oxide reductase 97.0 0.36 1.2E-05 48.8 27.1 269 156-440 57-452 (638)
328 3sre_A PON1, serum paraoxonase 97.0 0.24 8.2E-06 47.6 23.5 170 269-443 81-287 (355)
329 4asc_A Kelch repeat and BTB do 96.9 0.072 2.5E-06 50.1 19.4 208 223-443 7-253 (315)
330 2uvk_A YJHT; unknown function, 96.9 0.052 1.8E-06 52.1 18.1 91 178-270 19-128 (357)
331 1cru_A Protein (soluble quinop 96.8 0.45 1.6E-05 47.4 30.4 103 210-312 27-163 (454)
332 3pbp_A Nucleoporin NUP82; beta 96.8 0.074 2.5E-06 52.0 18.0 141 178-319 31-208 (452)
333 2uvk_A YJHT; unknown function, 96.7 0.026 9E-07 54.2 14.5 232 220-459 19-348 (357)
334 2woz_A Kelch repeat and BTB do 96.7 0.081 2.8E-06 49.9 17.5 221 223-455 18-289 (318)
335 2be1_A Serine/threonine-protei 96.7 0.027 9.2E-07 53.9 13.8 110 222-332 11-139 (339)
336 2be1_A Serine/threonine-protei 96.7 0.012 4E-07 56.4 11.3 200 176-382 7-246 (339)
337 3pbp_A Nucleoporin NUP82; beta 96.5 0.063 2.2E-06 52.5 15.4 110 342-458 28-163 (452)
338 3sbq_A Nitrous-oxide reductase 96.5 0.85 2.9E-05 46.1 23.3 228 223-453 72-408 (638)
339 3a9g_A Putative uncharacterize 96.3 0.83 2.8E-05 43.8 26.0 217 171-395 31-328 (354)
340 2zwa_A Leucine carboxyl methyl 96.2 0.24 8.3E-06 52.4 19.2 181 188-371 412-638 (695)
341 3ei3_A DNA damage-binding prot 96.1 2.5 8.5E-05 47.3 35.0 240 189-442 493-756 (1158)
342 3das_A Putative oxidoreductase 96.1 0.83 2.8E-05 43.7 20.5 151 288-440 27-219 (347)
343 2zwa_A Leucine carboxyl methyl 96.0 0.43 1.5E-05 50.5 20.0 194 219-415 396-639 (695)
344 1cru_A Protein (soluble quinop 95.9 1.6 5.6E-05 43.4 23.3 159 292-453 26-259 (454)
345 1tl2_A L10, protein (tachylect 95.7 0.39 1.3E-05 42.6 15.1 147 293-454 41-209 (236)
346 2g8s_A Glucose/sorbosone dehyd 95.3 0.36 1.2E-05 46.4 14.9 143 293-439 18-214 (353)
347 1xi4_A Clathrin heavy chain; a 95.1 0.66 2.2E-05 52.2 17.3 194 171-368 108-331 (1630)
348 1tl2_A L10, protein (tachylect 95.0 0.49 1.7E-05 42.0 13.3 132 304-447 4-157 (236)
349 3qhy_B Beta-lactamase inhibito 94.1 1.4 4.8E-05 40.7 15.3 225 210-456 24-249 (282)
350 3qhy_B Beta-lactamase inhibito 92.5 6.3 0.00022 36.2 17.4 238 171-433 26-264 (282)
351 3kci_A Probable E3 ubiquitin-p 90.1 14 0.00047 35.6 26.6 232 171-411 55-345 (389)
352 3b7f_A Glycosyl hydrolase, BNR 88.5 18 0.00061 34.6 28.2 259 180-447 24-366 (394)
353 4hvt_A Ritya.17583.B, post-pro 88.4 27 0.00093 36.6 20.7 230 217-452 137-429 (711)
354 2wg3_C Hedgehog-interacting pr 85.3 27 0.00094 34.5 16.3 106 335-443 14-159 (463)
355 2rqw_B 24-meric peptide from s 84.0 0.36 1.2E-05 26.1 0.9 11 48-58 5-15 (26)
356 4gq2_M Nucleoporin NUP120; bet 83.6 27 0.00093 38.1 16.6 73 294-366 237-315 (950)
357 1zi0_A DNA gyrase subunit A; b 83.0 29 0.001 32.1 22.0 229 219-454 1-278 (307)
358 3mvd_K Regulator of chromosome 80.4 43 0.0015 32.3 31.0 261 179-453 34-374 (423)
359 2wg3_C Hedgehog-interacting pr 79.4 51 0.0017 32.5 31.1 239 210-453 14-371 (463)
360 4d9s_A UVB-resistance protein 79.4 46 0.0016 32.0 32.9 268 171-453 18-357 (406)
361 3kci_A Probable E3 ubiquitin-p 73.6 64 0.0022 30.7 23.5 263 178-453 10-345 (389)
362 3mvd_K Regulator of chromosome 68.9 84 0.0029 30.2 29.8 227 171-411 77-374 (423)
363 2zux_A YESW protein; beta-prop 68.8 1E+02 0.0035 31.1 29.2 246 190-456 231-535 (591)
364 3uc1_A DNA gyrase subunit A; D 67.9 79 0.0027 29.5 20.7 187 260-453 52-279 (327)
365 3no0_A DNA gyrase subunit A; D 66.5 75 0.0026 28.7 19.1 152 166-322 22-195 (276)
366 1suu_A DNA gyrase subunit A; t 66.3 82 0.0028 29.1 25.0 228 218-453 5-283 (312)
367 4gq2_M Nucleoporin NUP120; bet 66.0 42 0.0014 36.6 12.1 39 210-248 236-274 (950)
368 1suu_A DNA gyrase subunit A; t 64.5 89 0.003 28.8 20.3 187 260-454 7-232 (312)
369 3no0_A DNA gyrase subunit A; D 63.9 85 0.0029 28.4 18.2 156 292-454 67-247 (276)
370 3b7f_A Glycosyl hydrolase, BNR 62.8 1E+02 0.0036 29.0 26.1 254 169-430 55-390 (394)
371 4fhn_B Nucleoporin NUP120; pro 62.1 35 0.0012 38.1 10.8 38 211-248 239-276 (1139)
372 4a9v_A PHOX; hydrolase, beta-p 62.0 28 0.00097 35.3 9.0 59 171-229 478-550 (592)
373 3zwu_A Alkaline phosphatase PH 61.4 37 0.0013 34.7 9.9 62 379-440 476-548 (592)
374 4fhn_B Nucleoporin NUP120; pro 60.9 63 0.0022 36.0 12.6 37 295-331 240-276 (1139)
375 4a9v_A PHOX; hydrolase, beta-p 59.8 42 0.0015 34.0 9.8 62 379-440 476-548 (592)
376 3of7_A Regulator of chromosome 59.4 1.4E+02 0.0047 29.3 24.8 187 169-366 67-339 (473)
377 3q6k_A 43.2 kDa salivary prote 57.9 1.3E+02 0.0045 28.7 24.6 181 232-441 124-342 (381)
378 1a12_A RCC1, regulator of chro 57.3 1.3E+02 0.0046 28.6 26.4 225 170-410 60-364 (413)
379 3f7f_A Nucleoporin NUP120; nuc 55.9 1.4E+02 0.0048 31.2 13.1 37 294-332 223-259 (729)
380 3zwu_A Alkaline phosphatase PH 54.8 32 0.0011 35.1 8.2 56 172-227 479-548 (592)
381 3uc1_A DNA gyrase subunit A; D 53.9 1.4E+02 0.0048 27.7 23.1 223 181-410 6-278 (327)
382 1zi0_A DNA gyrase subunit A; b 52.9 1.4E+02 0.0047 27.4 21.1 154 167-322 41-225 (307)
383 1zvt_A Topoisomerase IV subuni 50.4 83 0.0029 28.1 9.5 113 167-279 32-162 (256)
384 3l6v_A GYRA, DNA gyrase subuni 48.1 1.9E+02 0.0063 27.5 22.8 112 167-279 45-179 (370)
385 3f7f_A Nucleoporin NUP120; nuc 46.8 1.3E+02 0.0045 31.4 11.2 37 211-249 223-259 (729)
386 4hvt_A Ritya.17583.B, post-pro 46.7 2.7E+02 0.0093 29.0 23.6 247 156-410 112-429 (711)
387 3of7_A Regulator of chromosome 46.6 2.2E+02 0.0074 27.8 22.3 150 169-322 148-340 (473)
388 3l6v_A GYRA, DNA gyrase subuni 42.9 2.2E+02 0.0076 26.9 24.4 229 217-453 3-316 (370)
389 3mez_B Mannose-specific lectin 39.4 1.2E+02 0.0042 22.9 9.9 59 180-240 26-84 (113)
390 3q6k_A 43.2 kDa salivary prote 37.7 2.7E+02 0.0093 26.4 25.0 183 188-395 123-340 (381)
391 1wp5_A Topoisomerase IV; broke 36.7 2.6E+02 0.0088 25.8 21.0 155 167-322 38-224 (323)
392 1wp5_A Topoisomerase IV; broke 36.3 2.6E+02 0.0089 25.8 22.5 229 219-454 3-278 (323)
393 4d9s_A UVB-resistance protein 35.8 2.9E+02 0.0099 26.2 28.6 189 170-367 69-304 (406)
394 1xks_A Nuclear pore complex pr 27.8 4.3E+02 0.015 25.7 19.4 145 178-324 47-238 (450)
395 1q47_A Semaphorin 3A; beta pro 20.7 2.6E+02 0.0089 27.6 8.0 69 380-448 405-487 (495)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-59 Score=474.81 Aligned_cols=391 Identities=45% Similarity=0.817 Sum_probs=294.4
Q ss_pred CCCCCcCc--cccccccCCCC--CCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 011916 53 PCRSSSRL--HTFELIEKGSP--VKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSPYS 128 (475)
Q Consensus 53 p~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 128 (475)
|+|++|++ ++|.+..+... .....+.+|+..++..+.+.+. ...+||.|+.+++..+. .+.
T Consensus 2 p~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~il~~~~~~~~~~~-~~~ 66 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDV--------------EEAKILRLSGKPQNAPE-GYQ 66 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCCcccccCcchHHHHHHHHhhcccccc--------------ccceEEeccCCCCCCCc-ccc
Confidence 89999988 78888553322 1223456788888777765443 24589999876553322 121
Q ss_pred CCc-cCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-
Q 011916 129 PSI-LGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL- 206 (475)
Q Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~- 206 (475)
... +-... ......+.+..|++|..|+++|+||++.+|||+++|+||++++||+|.|++|+|||+.+++..+++.+
T Consensus 67 ~~~~~~~~~--~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~ 144 (420)
T 4gga_A 67 NRLKVLYSQ--KATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME 144 (420)
T ss_dssp ---------------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred cCcceeccc--ccCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEec
Confidence 111 11100 12234566778999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.+|++|+.|+.+.+||.+.....+.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 224 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999997788888
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+.+|...++.+.|+++++++++++.|+.|++||...++ .+.....|...|.+++|+|++..++++++|+.|++|+
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 899999999999999999999999999999999998765 3567778999999999999999999988788999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+||+.+++++..+.....+.++.|+++++.+++++|+.|+.|+|||+++++++.++.+|.+.|++|+|+|||++|+||+.
T Consensus 305 iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 305 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCc
Q 011916 443 DETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~~ 460 (475)
|++|+|||++........
T Consensus 385 D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 385 DETLRLWRCFELDPARRR 402 (420)
T ss_dssp TTEEEEECCSCSSCC---
T ss_pred CCeEEEEECCCCCccchh
Confidence 999999999876655443
No 2
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-55 Score=438.99 Aligned_cols=385 Identities=41% Similarity=0.741 Sum_probs=300.0
Q ss_pred CcccCCCCCcCccccccccCCCCCCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 011916 49 DRFIPCRSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSPYS 128 (475)
Q Consensus 49 drfip~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 128 (475)
|||||+|+.+|.+.|+++... ....|+..|++.+.-. ...++|.|...++... .+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------------~~~r~l~~~~~~~~~~-~~~~ 57 (401)
T 4aez_A 1 DRFIPSRPNTANAFVNSISSD------VPFDYSESVAEACGFD----------------LNTRVLAFKLDAPEAK-KPVD 57 (401)
T ss_dssp -----------------------------------------------------------CCEEEEEECSCCCCCC-CCCC
T ss_pred CCcCCCchhhhHHHHhhcCCc------chHHHHHHHHHHcCCC----------------ccCcEEeeCCCCCCCc-Cccc
Confidence 899999997777899995432 2346888887777422 1458999877654221 1110
Q ss_pred CCccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCC
Q 011916 129 PSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGP 208 (475)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~ 208 (475)
+..... .......++..|.+|..|++++++|++.+++++++++|+++.+++++.++.|++|++.+++....+...|
T Consensus 58 ---~~~~~~-~~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~ 133 (401)
T 4aez_A 58 ---LRTQHN-RPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDE 133 (401)
T ss_dssp ---------------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT
T ss_pred ---chhhcc-cccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC
Confidence 110000 0111122445799999999999999999999999999999999999999999999999999998888778
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||++.....+..+
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777788889
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++..++++++|+.|+.|++||+.+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
++++..+.+...+.+++|+|+++++++++|+.+|.|++||+.+++. ...+.+|...|.+++|+|+|.+|++++.||.|
T Consensus 294 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 294 GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp CCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred CCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 9999999999999999999999999998788999999999998654 44577999999999999999999999999999
Q ss_pred EEEecCCCCCCCCc
Q 011916 447 RFWNVFPSLKAPAL 460 (475)
Q Consensus 447 ~iW~~~~~~~~~~~ 460 (475)
++|++..+......
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988876654
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-50 Score=388.06 Aligned_cols=310 Identities=51% Similarity=0.942 Sum_probs=288.6
Q ss_pred CCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEE
Q 011916 146 PKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYI 224 (475)
Q Consensus 146 ~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~l 224 (475)
++..|.+|..|+++|+||++.+|||+++|+||++++||+|.|++|+|||+.+++..+.+.. +|...|++++|+|++++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 3557999999999999999999999999999999999999999999999999999888765 577899999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 225 SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 225 a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
|+|+.||+|++||+++++.+..+.+|...+.++.+++.++++|+.++.+.+|+.......+..+.+|...+..+.+++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999997778888899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCce----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC
Q 011916 305 RELASGGNDNQLLVWNQHSQQP----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~ 380 (475)
++|++++.|+.|++||+++++. ......+.+.|.+++++|++..++..++|+.++.|++||...........+...
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 9999999999999999987653 455667889999999999998888776677999999999999999999999999
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+..+.|+++++.+++++|..|+.|++||+.+++.+.++.+|.+.|++|+|+|||++|+||+.||+|+|||++..+
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999878899999999999999999999999999999999999999999999999999998654
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=339.10 Aligned_cols=281 Identities=19% Similarity=0.312 Sum_probs=253.9
Q ss_pred CCCCceeEEecCCC------CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 166 QDDFYLNLVDWSSQ------NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 166 ~~d~~v~~l~ws~~------~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
.++-.|.+++|+++ .+++++.|+.|+||++.+++......+ +|...|.+++|++++.++++|+.||+|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 35567899999863 377778899999999988765443322 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
.+++.+..+..|...+.+++|+ +++|++|+.||.|++||++ .+.....+..|...|.+++|+|++++||+|+.|+.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999999999994 6899999999999999998 556677788899999999999999999999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 395 (475)
++||+++++.+..+.+|...|.+++|+|++.. +++++ .|+.|++||+++++.+..+. +...|.+++|+|++++|++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 99999999999999999999999999999984 55554 89999999999999888875 6678999999999999998
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++.|+.|++||+.+++.+.++.+|...|.+++|+|++.+|++++.||+|++||+.
T Consensus 266 --~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 --SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp --EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred --EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8899999999999999999999999999999999999999999999999999963
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.1e-42 Score=338.59 Aligned_cols=276 Identities=19% Similarity=0.364 Sum_probs=251.2
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---- 241 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---- 241 (475)
.-.|.+++|+++ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|++|++|+.||.|++|++.+.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 345889999987 46677779999999999999887776 67889999999999999999999999999999865
Q ss_pred eeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
+....+.+|...|.++.|. +..+++++.|++|++||++ .+..+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4566788999999999994 5679999999999999998 6677888999999999999999999999999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEE
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~ 397 (475)
++++..+..+.+|...|.+++|+|++..++ +++ .|+.|++||+++++.+..+.+. ..|.+++|+|++++|++
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-- 287 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGNAFA-TGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-- 287 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCCEEE-EEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE--
Confidence 999999999999999999999999998555 444 8999999999999888877644 36999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|||.+|++|+.|++|+|||
T Consensus 288 g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999997
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-43 Score=353.19 Aligned_cols=280 Identities=22% Similarity=0.379 Sum_probs=256.5
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|++++|+|+ .+++++.|+.|+|||+.+++....+. +|.+.|.+++|+|+|++|++|+.||+|+|||+.+++++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 3456899999996 46666779999999999999887776 79999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..+.+|...|.+++|+ +++|++|+.|++|++||++ .+..+..+.+|...|.++.|++++.+|++|+.|+.|++||+.
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999994 6899999999999999998 567788899999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCC-------------------cEEEEecCCCCCeEEEEECCCCceeeeec-CCCCee
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQS-------------------SLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVC 382 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~-------------------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~ 382 (475)
+++....+..|...|.+++|+|++. .++++|+ .|+.|++||+.++.++..+. |...|.
T Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEE
Confidence 9999999999999999999999732 2566655 89999999999999988875 677899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||+|+||++.
T Consensus 343 ~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999998 8899999999999999999999999999999999999999999999999999863
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-40 Score=328.00 Aligned_cols=277 Identities=22% Similarity=0.365 Sum_probs=248.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--- 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--- 241 (475)
+.-.|++++|+++ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 3446899999987 47777889999999999998877776 57788999999999999999999999999998643
Q ss_pred ---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC--CCCEEEEEeCCC
Q 011916 242 ---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH--DDRELASGGNDN 314 (475)
Q Consensus 242 ---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg 314 (475)
.....+.+|...|.+++|. +..|++++.|++|++||++ .+..+..+.+|...|.+++|+| ++++|++|+.|+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg 220 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence 3456677899999999995 5799999999999999998 5677888999999999999988 578999999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCC
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVN 391 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~ 391 (475)
.|++||+++++++..+..|...|.+++|+|++.. +++++ .|+.|++||+++++.+..+... ..+.+++|+|++.
T Consensus 221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 9999999999999999999999999999999985 45544 8999999999998877766433 4688999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|||++|++|+.|++|+||+
T Consensus 298 ~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 88999999999999999999999999999999999999999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-40 Score=321.96 Aligned_cols=279 Identities=23% Similarity=0.371 Sum_probs=245.1
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCc-----EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSK-----VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~-----~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|.+++|+++ + +++++.|+.|++|++.+.. ....+. +|...|.+++|+|+|++|++|+.||+|+|||+
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 4456899999974 3 6777789999999986432 233343 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC------CCEEEEE
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD------DRELASG 310 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~------~~~lasg 310 (475)
.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++ +..+..+.+|...|.++.|+|. +..|+++
T Consensus 95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 9999999999999999999995 5899999999999999996 4567788999999999999984 4589999
Q ss_pred eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
+.|+.|++||+++.+....+.+|...|.+++|+|++.+|+ +++ .|+.|++||+.+++++..+.....|.+++|+|++
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA-SAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE-EEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE-EEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999555 444 8999999999999999999888999999999999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecC--------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTG--------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
..+++ +. ++.+++|++.....+..+.. |...+.+++|+|||++|++|+.||+|+||++.+.
T Consensus 250 ~~la~--~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 250 YWLAA--AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEE--EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CEEEE--Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99887 43 45699999998877776643 4567999999999999999999999999999754
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.7e-41 Score=334.80 Aligned_cols=282 Identities=21% Similarity=0.359 Sum_probs=247.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-- 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-- 242 (475)
+...|++++|+|+ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|++|++|+.|+.|+|||+.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 3456899999986 47778889999999999998887776 788899999999999999999999999999986532
Q ss_pred -----eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEe-----cCccCCEEEEEEcC-CCCEEE
Q 011916 243 -----RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKL-----AGHKSEVCGLKWSH-DDRELA 308 (475)
Q Consensus 243 -----~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~s~-~~~~la 308 (475)
....+.+|...|.++.|. +..|++|+.|++|++||++ .+..+..+ .+|...|.++.|++ ++++|+
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 345678999999999994 4679999999999999998 45555555 67999999999987 889999
Q ss_pred EEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------C
Q 011916 309 SGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------S 379 (475)
Q Consensus 309 sg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------~ 379 (475)
+|+.|+.|++||++ ..+.+..+.+|...|.+++|+|++.. +++++ .|++|++||+++++++..+... .
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSC
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEc--CCCeEEEEECCCCcEEEEecccccccccccC
Confidence 99999999999998 55778889999999999999999985 55554 8999999999999988776432 2
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe----cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.+++|+|+|++|++ |+.||.|++||...++.+..+ .+|.+.|.+++|+|||.+|++|+.|++|+||++....
T Consensus 300 ~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 300 IVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 4899999999999999 889999999999999888877 6799999999999999999999999999999997654
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.2e-41 Score=330.05 Aligned_cols=279 Identities=18% Similarity=0.192 Sum_probs=231.8
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCC------------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS------------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~------------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
-.+.+++|+++ .+|+++.++.+++||.... ..... ..+...|.+++|+|++ .|++|+.||+|+|
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~v~l 107 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGER-GILVASDSGAVEL 107 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCCC-eEEEEECCCEEEE
Confidence 45889999997 6788887888888863210 01111 1345679999999985 6889999999999
Q ss_pred EECCCCeeeEE----ecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEE
Q 011916 236 WDGTQCKRVRT----FGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELA 308 (475)
Q Consensus 236 wd~~~~~~~~~----~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~la 308 (475)
||+.+++.+.. +.+|...|.+++| ++++|++|+.|++|++||++ .+..+..+.+|...|.+++|++++. +|+
T Consensus 108 Wd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 108 WELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSYRAHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp EEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred EeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCcCCceEEEEecCCCCCcee
Confidence 99998876544 3489999999999 46899999999999999998 6788899999999999999999874 789
Q ss_pred EEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
+|+.|++|++||+++++++..+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. |...|.+++
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999999999999998887764 35667999999998888888876 89999999999999988875 678899999
Q ss_pred EcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCCC
Q 011916 386 WSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 386 ~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|+|++. +|++ |+.|+.|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.|++|++|++.....
T Consensus 265 fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 265 FSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999985 5666 789999999999988754 6789999999999999986 577999999999999986544
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-39 Score=315.08 Aligned_cols=278 Identities=19% Similarity=0.281 Sum_probs=246.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|.+++|+|+ .+++++.|+.|+|||+.++.....+. .|...|.+++|+|++++|++|+.||+|++||+.+++.+..
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 45899999997 36777779999999999998887776 6888999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+.+|...|.+++|+ +.+|++|+.|++|++||++........+.+|...|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999995 589999999999999999866567778999999999999999 678999999999999999998
Q ss_pred CceeEEEe-ccccceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 324 QQPTLRLT-EHTAAVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 324 ~~~~~~~~-~h~~~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
..+...+. .|...+..+.|+| ++. ++++++ .|+.|++||+++++++..+. |...|..++|+|+++.|++ |+
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s 247 (304)
T 2ynn_A 173 STPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GS 247 (304)
T ss_dssp SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EE
T ss_pred CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE--Ec
Confidence 87766665 4668899999987 445 555655 89999999999999998885 6788999999999999998 88
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~ 453 (475)
.||.|++||+.+++.+..+..|...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 248 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 999999999999999999999999999999999875 577776555 77888764
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-40 Score=322.38 Aligned_cols=285 Identities=19% Similarity=0.358 Sum_probs=235.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEE--eeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ee
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRL--CDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KR 243 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~--~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~ 243 (475)
.+.+++|+|+ .+++++.|+.|+||+..++..... ...+|...|.+++|+|+|++|++|+.||+|+|||+..+ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 5788999997 466677799999999998864432 22378999999999999999999999999999998776 46
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+..+.+|...|.+++|+ +++|++|+.|++|++||++... ..+..+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 78889999999999995 6899999999999999997543 3456788999999999999999999999999999999
Q ss_pred ECCCCc--eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC---------------ceeeeec--CCCC
Q 011916 320 NQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG---------------HQLNSVD--TGSQ 380 (475)
Q Consensus 320 d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~---------------~~~~~~~--~~~~ 380 (475)
|.+.++ +...+.+|...|.+++|+|++.+|+ +++ .|++|++||.... +++..+. +...
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~-s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCCEEE-EEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 998775 4467889999999999999998555 444 8999999996332 1222332 5678
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------e-EEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEe
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--------K-VSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWN 450 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--------~-~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~ 450 (475)
|.+++|++++..|++ ++.|+.|++|+..... . .....+|...|++++|+|++ .+||+|+.||+|++|+
T Consensus 255 v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 255 IYDIAWCQLTGALAT--ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEEECTTTCCEEE--EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEEecCCCEEEE--EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 999999999999998 7789999999986542 1 22345899999999999998 4999999999999999
Q ss_pred cCCCCCCCC
Q 011916 451 VFPSLKAPA 459 (475)
Q Consensus 451 ~~~~~~~~~ 459 (475)
+...+....
T Consensus 333 ~~~~~~~~~ 341 (345)
T 3fm0_A 333 YQRPEGLHH 341 (345)
T ss_dssp ECC------
T ss_pred ecCCCCccc
Confidence 988776544
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.6e-39 Score=309.88 Aligned_cols=279 Identities=21% Similarity=0.402 Sum_probs=245.7
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.+++|+++ . +++++.|+.|++|+..+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 3456899999997 3 6666779999999999999887775 78899999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..+.+|...|.+++|+ +++|++|+.|+.|++||++ ....+..+..|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 9999999999999995 5899999999999999998 567778889999999999999999999999999999999999
Q ss_pred CCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CC--eeEEEEc-CCCCeEEEEE
Q 011916 323 SQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQ--VCNLAWS-KNVNELVSTH 397 (475)
Q Consensus 323 ~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~--v~~l~~s-~~~~~l~~~~ 397 (475)
+++.+..+. .+...+..++|+|++.++++.+ .|+.|++||+.+++++..+... .. .....++ +++.+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-- 254 (312)
T 4ery_A 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-- 254 (312)
T ss_dssp TCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE--
T ss_pred CCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE--
Confidence 998877664 4667899999999999666643 7999999999999988887532 22 2223444 66777777
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe--CCCCEEEEecC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA--GDETLRFWNVF 452 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s--~Dg~I~iW~~~ 452 (475)
|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88999999999999999999999999999999999999999987 69999999975
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=316.90 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=226.7
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCc--EEEEeeCC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK--VTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ---- 240 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~--~~~~~~~~-~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~---- 240 (475)
.-.|.+++|+++.+++++.|+.|+||++.++. ....+..+ |...|.+++|+|++++|++|+.||+|+|||+..
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 34588899999977777889999999998763 34444234 899999999999999999999999999999853
Q ss_pred ---CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 241 ---CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 241 ---~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
.+.+..+.+|...|.+++|+ +++|++|+.|++|++||++... ..+..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 45677889999999999995 6899999999999999995332 456778899999999999999999999999
Q ss_pred CCcEEEEECCCC--ceeEEEeccccceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCC--------ceeeeec--CCC
Q 011916 313 DNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNG--------HQLNSVD--TGS 379 (475)
Q Consensus 313 Dg~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~--------~~~~~~~--~~~ 379 (475)
|++|++||...+ +++..+.+|...|.+++|+|++. .++++++ .|++|++||+.++ .+...+. +..
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 999999998876 57788899999999999999842 3566655 8999999998764 2333332 677
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEE-ecCCCc-ceEEEEECC--CCCEEEEEeCCCCEEEEecCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--KVST-LTGHSL-RVLYLATSP--DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~-l~~h~~-~V~~l~~sp--dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.|.+++|++++ .|++ ++.||.|++||..+++ .+.. +.+|.. .|.+++|+| ++++|++|+.||+|+||++..
T Consensus 252 ~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 89999999665 6776 7789999999998764 3333 357887 899999999 789999999999999999864
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.2e-40 Score=326.70 Aligned_cols=286 Identities=18% Similarity=0.257 Sum_probs=229.0
Q ss_pred CCCceeEEecCCC-CEEEEEc-------CCeEEEEECCCCcEEEEe---eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGL-------GTCVYLWTASNSKVTRLC---DLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~-------~~~V~lw~~~~~~~~~~~---~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
++-.|++++|+|+ .+|+++. |+.|++|+..++...... ..+|...|.+++|+|++. +++++.||+|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEE
Confidence 4556999999998 4555544 578999998776532221 125788899999999986 556788999999
Q ss_pred EECCCCeeeE----EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEE
Q 011916 236 WDGTQCKRVR----TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELA 308 (475)
Q Consensus 236 wd~~~~~~~~----~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~la 308 (475)
||+.+++... ...+|...|.+++|+ +++|++|+.|+.|++||++ .+..+..+.+|...|.+++|++++. +++
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 9998876543 334899999999994 6899999999999999998 6778888999999999999999875 889
Q ss_pred EEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
+++.|+.|++||+++++++..+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. +...|.+++
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 99999999999999988765543 46778999999999888888876 89999999999999888875 667899999
Q ss_pred EcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 386 WSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 386 ~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
|+|++. +|++ |+.|+.|+|||+.+++.+..+ +|.+.|++|+|+| |+.+|++++.||+|++|++....+...
T Consensus 277 ~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 277 YSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp ECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred EcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 999985 5666 779999999999998877654 7999999999998 899999999999999999976655444
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-39 Score=313.94 Aligned_cols=264 Identities=19% Similarity=0.329 Sum_probs=232.5
Q ss_pred EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 201 TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 201 ~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
.+.+. +|.+.|.+++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++| ++++|++|+.|++|++||+
T Consensus 6 ~~~~~-~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEeec-CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 34444 78899999999999999999999999999999999999999999999999999 5799999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
. .+..+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|++..++++|+ .
T Consensus 85 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs--~ 161 (304)
T 2ynn_A 85 N-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--L 161 (304)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE--T
T ss_pred C-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe--C
Confidence 8 56778889999999999999999999999999999999999877 455678899999999999996555777766 8
Q ss_pred CCeEEEEECCCCceeeeec--CCCCeeEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 358 DRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSK--NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
|+.|++||+.++.....+. +...+..+.|+| ++.+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 9999999998887766653 446788999987 6677887 889999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+.+|++|+.||+|++||+.+......+. +...+|++.
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~ 277 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEE
Confidence 9999999999999999999887665543 234455443
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-39 Score=321.24 Aligned_cols=281 Identities=23% Similarity=0.364 Sum_probs=241.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCC-----------------CCCcEEEEEEcCCCCEEEEEe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLG-----------------PGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~-----------------~~~~V~~v~~spdg~~la~g~ 228 (475)
+.-.|++++|+|+ .+++++.++.+.||++.+++....+... +...|.+++|+|+|++|++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 4456899999997 7888888999999999999877665421 122499999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCC
Q 011916 229 NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDR 305 (475)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 305 (475)
.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++ .+.....+. +...+.+++|+| +++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLS-IEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEE-CSSCEEEEEECSTTCC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEEE-cCCCcEEEEEECCCCC
Confidence 99999999999999999999999999999994 6899999999999999998 445444444 567799999999 899
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--------
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------- 370 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------- 370 (475)
+|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++..|+ +++ .|+.|++||+.+..
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s--~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGS--LDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEEC------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCCCcccccCC
Confidence 9999999999999999998877766 56899999999999998554 444 89999999997643
Q ss_pred ----eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC------CCCEEEE
Q 011916 371 ----QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP------DGQTIVT 439 (475)
Q Consensus 371 ----~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp------dg~~l~s 439 (475)
+...+ .+...|.+++|++++.+|++ |+.|+.|++||..+++.+..+.+|...|.+++|++ ++.+|++
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 23333 46778999999999999998 88999999999999999999999999999999986 6889999
Q ss_pred EeCCCCEEEEecCCC
Q 011916 440 GAGDETLRFWNVFPS 454 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~ 454 (475)
|+.||+|+||++...
T Consensus 376 gs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 376 GSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTSEEEEEEEEEC
T ss_pred ECCCCcEEECccccc
Confidence 999999999998643
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-38 Score=312.13 Aligned_cols=277 Identities=19% Similarity=0.309 Sum_probs=232.0
Q ss_pred CCceeEEec-----CC-C--CEEEEEcCCeEEEEECCCCc-------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 011916 168 DFYLNLVDW-----SS-Q--NVLAVGLGTCVYLWTASNSK-------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232 (475)
Q Consensus 168 d~~v~~l~w-----s~-~--~~la~~~~~~V~lw~~~~~~-------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~ 232 (475)
.-.|.+++| ++ + .+++++.|+.|++||+.+.+ ....+. +|...|.+++|+|++.+|++|+.||+
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence 446888888 54 3 46777779999999987542 233333 89999999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec---CccCCEEEEEEcCCC---
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA---GHKSEVCGLKWSHDD--- 304 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~--- 304 (475)
|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||+. . ....... .|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-G-ECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-S-CEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-C-CceeeeecccCCCceeeeeeeccccccc
Confidence 9999999999999999999999999995 6899999999999999997 2 2233333 788999999999987
Q ss_pred -------CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeec
Q 011916 305 -------RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVD 376 (475)
Q Consensus 305 -------~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~ 376 (475)
.+|++++.|+.|++||. ..+....+..|...|.+++|+|++++|++ |+ .|+.|++||+. .......+.
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-gs--~dg~v~iwd~~~~~~~~~~~~ 253 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT-GG--KDKKLLIWDILNLTYPQREFD 253 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTCEEEEEESSCCSSCSEEEE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE-Ec--CCCeEEEEECCCCcccceeec
Confidence 79999999999999994 55667788899999999999999995554 44 89999999994 455566666
Q ss_pred CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--Eec-----------CCCcceEEEEECCCCCEEEEEeCC
Q 011916 377 TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLT-----------GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 377 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~-----------~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+...|.+++|+|++..+++ + .|+.|++||+.+.+... .+. +|...|.+++|+|+|++|++|+.|
T Consensus 254 ~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 254 AGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD 330 (343)
T ss_dssp CSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence 7778999999999987765 4 57789999998765433 443 688899999999999999999999
Q ss_pred CCEEEEecCCC
Q 011916 444 ETLRFWNVFPS 454 (475)
Q Consensus 444 g~I~iW~~~~~ 454 (475)
|+|++|++.++
T Consensus 331 g~v~~w~~~~g 341 (343)
T 2xzm_R 331 GVIRTFSFETS 341 (343)
T ss_dssp SEEEEEEEEEE
T ss_pred ceEEEEEEEcc
Confidence 99999998754
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-38 Score=337.20 Aligned_cols=278 Identities=19% Similarity=0.343 Sum_probs=242.1
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~ 247 (475)
..+++|+|+ +.++.+.++.|+||++.+++....+. +|...|++++|+|+|++||+|+.||+|+|||+.++ .....+
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 455889997 67788888999999999888777765 89999999999999999999999999999998754 345678
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWN 320 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd 320 (475)
.+|...|.+++|+ +..|++++.+ +.|++||.. .....+.+|...|.+++|+|++. .|++|+.|++|++||
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd 176 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 8999999999995 6888888765 478888753 34556889999999999999987 699999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCe
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~ 392 (475)
...++.+..+.+|...|.+++|+|+++. +++++ .|+.|++||+.+++++..+ .|...|.+++|+|++++
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCeEeeeeccccCceEEEEECCCCCE-EEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence 9999989999999999999999999984 55554 8999999999999988777 47789999999999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEE-------------------------------------------EecCCCcceEEEE
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVS-------------------------------------------TLTGHSLRVLYLA 429 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~-------------------------------------------~l~~h~~~V~~l~ 429 (475)
|++ ++.|+.|++||+.+++.+. .+.+|...|++++
T Consensus 254 l~s--~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 254 IAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp EEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEE--EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 998 7899999999998776543 3457999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|+|||++|++++.|++|++||+..+...
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 9999999999999999999999877543
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-38 Score=321.39 Aligned_cols=258 Identities=21% Similarity=0.318 Sum_probs=235.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+ +.+|++|+.|++|++||+. ....
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~ 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFEC 184 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce
Confidence 789999999999999999999999999999999999999999999999999995 6899999999999999998 5677
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.+++|+|++..+ ++++ .|+.|++|
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~s--~D~~v~vw 261 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCS--NDQTVRVW 261 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEE--TTSCEEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE-EEEc--CCCeEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999854 5544 79999999
Q ss_pred ECCCCceeeee-cCCCCeeEEEEcCC--------------------CCeEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 365 NTSNGHQLNSV-DTGSQVCNLAWSKN--------------------VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 365 d~~~~~~~~~~-~~~~~v~~l~~s~~--------------------~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
|+.++++...+ .+...|.+++|+|+ +.+|++ |+.|+.|++||+.++..+..+.+|..
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCCceEEEEECCCC
Confidence 99999988877 46788999999997 556777 88999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
.|.+++|+|+|++|++|+.||+|++||+..+.....+. +...++++.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 99999999999999999999999999998877666543 444555543
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-37 Score=302.87 Aligned_cols=282 Identities=24% Similarity=0.389 Sum_probs=245.0
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCcE-----EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSKV-----TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~~-----~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|++++|+|+ + +++++.|+.|+|||+.+.+. ...+. +|...|.+++|+|+|++|++|+.||.|++|+.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 4557999999985 3 55677799999999876542 23333 78999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC--CEEEEEeCCC
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD--RELASGGNDN 314 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~lasg~~Dg 314 (475)
...........+...+..+.+. +.+|++|+.|+.+++||+...........+|...|..++|++++ .++++++.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~ 195 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC
Confidence 9999998888888888888884 68999999999999999986556666678899999999999864 5789999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
.|++||+++++.+..+.+|...|.+++|+|++..|+ +++ .|+.|++||+.+++++..+.....+..+.|+|++..++
T Consensus 196 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-SGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEE-EEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence 999999999999999999999999999999998554 444 89999999999999999999999999999999876554
Q ss_pred EEEecCCCeEEEEECCCCceEEEec---------CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLT---------GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ ..|+.|++||+++...+..+. +|...|++++|+|||++|++|+.||.|+|||+.++.
T Consensus 273 ~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 273 A---ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp E---EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred c---cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 4 468999999999887766654 588899999999999999999999999999998875
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-38 Score=333.99 Aligned_cols=284 Identities=18% Similarity=0.276 Sum_probs=238.1
Q ss_pred CCCceeEEecCCCC---EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQN---VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~~---~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+.-.+++++|+|+. +++++.|+.|++||..+++....+. +|.+.|.+++|+|+|++||+|+.||+|+|||+.+++.
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 34568999999962 7777889999999999888777765 8999999999999999999999999999999999999
Q ss_pred eEEec-------CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc-------------------------------
Q 011916 244 VRTFG-------GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD------------------------------- 283 (475)
Q Consensus 244 ~~~~~-------~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~------------------------------- 283 (475)
+..+. +|...|.+++|+ +.+|++++.|++|++||++....
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 88884 799999999994 68999999999999999973211
Q ss_pred -----------cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-e--------------------
Q 011916 284 -----------YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-T-------------------- 331 (475)
Q Consensus 284 -----------~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~-------------------- 331 (475)
....+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ .
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~ 384 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 384 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEE
Confidence 12345689999999999999999999999999999998765432211 0
Q ss_pred -------------------------------------------------------------ccccceeEEEECCCCCcEE
Q 011916 332 -------------------------------------------------------------EHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 332 -------------------------------------------------------------~h~~~v~~l~~sp~~~~ll 350 (475)
.|...+.+++|+|+++. +
T Consensus 385 s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-l 463 (611)
T 1nr0_A 385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-V 463 (611)
T ss_dssp ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-E
T ss_pred EcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-E
Confidence 12344678999999984 5
Q ss_pred EEecCCCCCeEEEEECCCCce--eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE--ecCCCcce
Q 011916 351 ASGGGTADRCIRFWNTSNGHQ--LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVST--LTGHSLRV 425 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~--l~~h~~~V 425 (475)
++|+ .|+.|++||+.++.. +....+...|.+++|+|+|++|++ ++.|+.|++|++.+ ++.+.. +.+|...|
T Consensus 464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 5554 899999999987653 344568889999999999999999 88999999999987 555443 33499999
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+++|+|||++|++|+.|++|++|++..+..
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 9999999999999999999999999987654
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=303.69 Aligned_cols=285 Identities=15% Similarity=0.212 Sum_probs=254.2
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.+++|+++ . +++++.++.|++||+.+++....+. +|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3456899999987 3 5556679999999999999888775 78999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCC-----CcEEEEECCCCCc----------cEEEecCccC--CEEEEEEcCCCC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRD-----RNILQHDLRVSSD----------YICKLAGHKS--EVCGLKWSHDDR 305 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~d-----g~I~iwd~~~~~~----------~~~~~~~h~~--~V~~l~~s~~~~ 305 (475)
..+. +...|.+++|+ +.+|++++.+ +.|.+||+..... ....+..|.. .+.+++|+|+++
T Consensus 110 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 110 ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 8888 88899999994 6899999999 9999999975432 3445556666 899999999999
Q ss_pred EEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEE
Q 011916 306 ELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL 384 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l 384 (475)
+|++++.||.|++||+++ .+.+..+..|...|.+++|+|++..|++.+ .|+.|++||+.+++.+..+.+...+..+
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCCceeeeecCCCCceeE
Confidence 999999999999999998 788888999999999999999999665543 7999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCC--------------eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 385 AWSKNVNELVSTHGYSQN--------------QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg--------------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|+|+++.+++ +..++ .+++||..+++.+..+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 266 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 266 VITPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EECSSSSEEEE--EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999 55666 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 011916 451 VFPSLKAP 458 (475)
Q Consensus 451 ~~~~~~~~ 458 (475)
+..+....
T Consensus 344 ~~~~~~~~ 351 (369)
T 3zwl_B 344 FEKSYFDF 351 (369)
T ss_dssp ECHHHHTC
T ss_pred Cccccchh
Confidence 98765433
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.7e-38 Score=313.24 Aligned_cols=281 Identities=13% Similarity=0.171 Sum_probs=248.6
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCc------EEEEeeCCCCCcEEEEEEcCC----C---CEEEEEeCCCeE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK------VTRLCDLGPGDSVCSVQWTRE----G---SYISVGTNLGQV 233 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~------~~~~~~~~~~~~V~~v~~spd----g---~~la~g~~dg~v 233 (475)
+.-.|.+++|+++.+++++.|+.|++|++.+++ ....+. +|...|.+++|+|+ | ++|++++.||.|
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 445789999999777888889999999999988 455554 78999999999999 9 999999999999
Q ss_pred EEEECCCCee-----eEEecCC-----CCceEEEEeC------CCE-EEEEeCCCcEEEEECCCC-----CccEE-----
Q 011916 234 QVWDGTQCKR-----VRTFGGH-----QTRAGVLAWN------SRI-LSSGSRDRNILQHDLRVS-----SDYIC----- 286 (475)
Q Consensus 234 ~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~------~~~-l~sgs~dg~I~iwd~~~~-----~~~~~----- 286 (475)
++||+.+++. +..+..| ...|.+++|+ +.+ |++++.||.|++||++.. ...+.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 9999998887 8888888 5899999998 578 999999999999999850 23333
Q ss_pred Ee-------cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec---c---ccceeEEEECCCCCcEEEEe
Q 011916 287 KL-------AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE---H---TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 287 ~~-------~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h---~~~v~~l~~sp~~~~ll~sg 353 (475)
.+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+|++..|++.+
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence 45 5588999999999999 999999999999999999999999998 8 99999999999998665543
Q ss_pred cCCCC---CeEEEEECCCCceeeeec--------------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q 011916 354 GGTAD---RCIRFWNTSNGHQLNSVD--------------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 354 ~Gs~d---~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 416 (475)
.| +.|++||+.+++.+..+. +...|.+++|+|++++|++ ++.||.|++||+.+++.+.
T Consensus 253 ---~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 253 ---DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp ---EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEEE
T ss_pred ---cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCCceeE
Confidence 68 999999999999988885 6788999999999999998 7899999999999999999
Q ss_pred Eec------CC---------------CcceEEEEECCCC----------CEEEEEeCCCCEEEEecCCC
Q 011916 417 TLT------GH---------------SLRVLYLATSPDG----------QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 417 ~l~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.+. +| ...|++++|+|+| ++|++++.||.|++|++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999 88 9999999999998 79999999999999999865
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.1e-37 Score=297.42 Aligned_cols=278 Identities=21% Similarity=0.266 Sum_probs=244.3
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEE----EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTR----LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~----~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
+.-.+.+++|+++ .+++++.++.|++|++.+++... ....+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 4456889999997 67777779999999998765322 211267899999999999999999999999999999987
Q ss_pred e--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 242 K--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+ ....+..|...|.+++|+ +++|++++.||.|++||++ ....+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 7 667788999999999995 6899999999999999998 5677888899999999999999999999999999999
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+||+++++.+..+. +...+.+++|+|++..+++.+ .|+.|++||+.+++......+...+.+++|+|++++|++
T Consensus 209 ~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-- 282 (337)
T 1gxr_A 209 SWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS-- 282 (337)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE--
T ss_pred EEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE--
Confidence 99999998877764 788899999999999666543 799999999999988777778899999999999999998
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+..+|.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 778999999999999887554 488899999999999999999999999999974
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=303.32 Aligned_cols=258 Identities=22% Similarity=0.359 Sum_probs=229.4
Q ss_pred CCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCee--eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKR--VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|.+++|+++ +.+|++|+.||+|+||++..++. ...+.+|...|.+++|+ +.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 79999999999974 67999999999999999887654 45688999999999995 589999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
. .+..+..+..|...+.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+|++++|++ ++ .|
T Consensus 110 ~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las-g~--~d 185 (321)
T 3ow8_A 110 E-NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS-GA--ID 185 (321)
T ss_dssp T-TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE-EE--TT
T ss_pred C-CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE-Ec--CC
Confidence 8 56777888889999999999999999999999999999999999999999999999999999999995555 43 89
Q ss_pred CeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEE
Q 011916 359 RCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|
T Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence 999999999999988885 6678999999999999998 8899999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEecCCCCCCCCc-ccCCcccccc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLG 470 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~ 470 (475)
++++.|++|++||+..+.....+ .+...++++.
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 99999999999999887766554 3444555543
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.7e-37 Score=329.62 Aligned_cols=278 Identities=24% Similarity=0.381 Sum_probs=239.4
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCc-----EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSK-----VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~-----~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|.+++|+++ + +++++.|+.|+||++.+.. ....+. +|...|.+++|+|+|++|++|+.||+|+|||+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 4556899999975 3 6677779999999997642 233333 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCEEEEEEcCCC--CEEEEEe
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEVCGLKWSHDD--RELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~s~~~--~~lasg~ 311 (475)
.+++.+..+.+|...|.+++|+ +++|++|+.|++|++||+.. ...... ..+|...|.+++|+|++ ..|++|+
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 9999999999999999999995 68999999999999999863 222222 24688999999999986 5899999
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN 391 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~ 391 (475)
.|+.|++||+++++....+.+|...|.+++|+|++.. +++++ .|+.|++||+.+++++..+.....+.+++|+|++.
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 9999999999999999999999999999999999985 45544 89999999999999999998888999999999998
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCC-------------------cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-------------------LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+++ + .++.|++||+.+++.+..+..+. ..+++++|+|||++|++|+.||+|+||++.
T Consensus 616 ~l~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 616 WLCA--A-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEE--E-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEE--E-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 8776 4 46779999999998887775432 137889999999999999999999999985
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=292.04 Aligned_cols=282 Identities=17% Similarity=0.220 Sum_probs=244.4
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ee
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KR 243 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~ 243 (475)
.-.|.+++|..+ .+++++.|+.|++||+.+++....+. .|...|.+++|+|++++|++|+.||.|++|++... +.
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 96 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP 96 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc
Confidence 456888999434 46666779999999999988777765 67899999999999999999999999999998654 66
Q ss_pred eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
+..+.+|...|.+++|++++|++++.||.|++|| .......+..|...|.++.|++ ++++|++++.|+.|++||
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-- 171 (313)
T 3odt_A 97 LYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-- 171 (313)
T ss_dssp -CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--
T ss_pred ccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--
Confidence 7788899999999999999999999999999999 4567778889999999999998 999999999999999999
Q ss_pred CCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecC
Q 011916 323 SQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 323 ~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
..+....+.. |...|.+++|+|++. +++ ++ .|+.|++||+++++.+..+. +...|.+++|+|++ .+++ ++.
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~ 244 (313)
T 3odt_A 172 NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS-CS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVS--CGE 244 (313)
T ss_dssp TTEEEEEECSSCSSCEEEEEEEETTE-EEE-EE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEE--EET
T ss_pred cCceEEEEeccCcccEEEEEEcCCCe-EEE-cc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEE--Eec
Confidence 4556667776 899999999999998 544 43 79999999999999998886 77889999999999 5666 779
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++..+.........
T Consensus 245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 99999999999999999999999999999999998 667999999999999987766654433
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-36 Score=318.32 Aligned_cols=270 Identities=27% Similarity=0.517 Sum_probs=239.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
...+.+++|+|+ .+++++.++.|++||........+. +|...|.+++|+|+|++|++|+.||.|++||. +++.+.
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~ 379 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 379 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 345788999986 3666677999999998776654433 78899999999999999999999999999995 578888
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+.+|...|.+++| ++++|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~ 456 (577)
T 2ymu_A 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-N 456 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-T
T ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-C
Confidence 89999999999999 46899999999999999964 5677888999999999999999999999999999999996 5
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...|.+++|+|+++.|++ ++ .|+.|++||. +++++..+. +...|.+++|+|++++|++ ++.|+
T Consensus 457 ~~~~~~~~~~~~~v~~~~~spd~~~las-~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--~~~dg 530 (577)
T 2ymu_A 457 GQLLQTLTGHSSSVRGVAFSPDGQTIAS-AS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDK 530 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSCEEEE-EE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTS
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEE-Ee--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE--EECcC
Confidence 6678888999999999999999995555 43 7999999995 677777664 6788999999999999998 78999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|++||+ +++.+..+.+|...|++++|+|||++|+|++.|++|++||
T Consensus 531 ~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 531 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999996 6788999999999999999999999999999999999997
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-38 Score=314.40 Aligned_cols=285 Identities=16% Similarity=0.368 Sum_probs=247.3
Q ss_pred ceeEEecCCC-C-EEEEE-----------cCCeEEEEECCCCcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 170 YLNLVDWSSQ-N-VLAVG-----------LGTCVYLWTASNSKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~-----------~~~~V~lw~~~~~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
.+.+++|+|+ . +++++ .|+.|+||++.+++.. ......|...|.+++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 4678999997 3 66665 5889999999987632 2222367899999999999999999999999999
Q ss_pred EECCC----CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC------cc--EEEecCccCCEEEEEE
Q 011916 236 WDGTQ----CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS------DY--ICKLAGHKSEVCGLKW 300 (475)
Q Consensus 236 wd~~~----~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~~--~~~~~~h~~~V~~l~~ 300 (475)
||+.+ .+.+..+.+|...|.+++|+ +.+|++++.|+.|++||++... .. ......|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 45888899999999999995 6799999999999999998544 21 1234679999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCceeEEEecc------ccceeEEEECCCCCcEEEEecCCCCC---eEEEEECCCC-
Q 011916 301 SHD-DRELASGGNDNQLLVWNQHSQQPTLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADR---CIRFWNTSNG- 369 (475)
Q Consensus 301 s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~---~I~iwd~~~~- 369 (475)
+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++..++++++ .|+ .|++||++++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNAN 251 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCC
Confidence 998 789999999999999999999998888876 789999999999877777765 787 9999999986
Q ss_pred ceeeeec--CCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEEEEEeCCCC
Q 011916 370 HQLNSVD--TGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTIVTGAGDET 445 (475)
Q Consensus 370 ~~~~~~~--~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~ 445 (475)
..+..+. +...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 5666665 778899999999 8888888 7889999999999999999999999999999999999 89999999999
Q ss_pred EEEEecCCCCCCC
Q 011916 446 LRFWNVFPSLKAP 458 (475)
Q Consensus 446 I~iW~~~~~~~~~ 458 (475)
|++|++.......
T Consensus 330 i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 330 IEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEESCCCCCSS
T ss_pred EEEEEccCCCCCc
Confidence 9999998776544
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.9e-38 Score=309.94 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=219.3
Q ss_pred EecCCCCE-EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeee--
Q 011916 174 VDWSSQNV-LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRV-- 244 (475)
Q Consensus 174 l~ws~~~~-la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~-- 244 (475)
++..++++ +....+.....|++..... ..|...|.+|+|+|||++||+|+. ||.|++|+..++...
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 55555544 4444467789998754332 268899999999999999999997 788999998776543
Q ss_pred --EEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCcc---EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 245 --RTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDY---ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 245 --~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
....+|...|.+++|. ...+++++.||+|++||+...... .....+|...|.+++|+|++++|++|+.|+.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3344788999999995 367888999999999999744321 2345689999999999999999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~ 395 (475)
||+++++.+..+..|...|.+++|+|++..++++++ .|+.|++||+++++++..+. +...+.+++|+|++..+++
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999999999999999999999987777766 89999999999998877653 4567999999998665444
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
+ |+.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+..++......+...|.++..
T Consensus 244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 3 7899999999999999999999999999999999987 5799999999999999998877766667777766543
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=304.01 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=208.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEe---eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLC---DLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~---~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+..|.+++|+++ .+++++.||.|+|||+.+++..... ..+|.+.|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3456899999997 5777788999999999988654332 23799999999999999999999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcC-CCCEEEEEeCCCcE
Q 011916 243 RVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSH-DDRELASGGNDNQL 316 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~-~~~~lasg~~Dg~I 316 (475)
.+..+.+|...|.+++|+ + .+|++|+.|++|++||++ ..+....+ ..|...+.+++|+| ++++|++|+.|+.|
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 999999999999999995 3 589999999999999998 44555544 34566799999999 56789999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++||+++++++..+.+|...|.+++|+|++..++++|+ .|++|++||+.+++++....|...|.+++|+|+++.++++
T Consensus 240 ~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence 99999999999999999999999999999977777776 8999999999999988877888999999999999877654
Q ss_pred EecCCCeEEEEECCCCc
Q 011916 397 HGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~ 413 (475)
++.|+.|++|++++..
T Consensus 318 -~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 -VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -EETTSCEEEEECCC--
T ss_pred -EcCCCeEEEEECCCCC
Confidence 6689999999998654
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=301.99 Aligned_cols=283 Identities=14% Similarity=0.240 Sum_probs=241.1
Q ss_pred CCCceeEEecCCC--CEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~v~iwd 237 (475)
+...|.+++|+|+ .+++++. ++.|+||++.+++.......+|...|.+++|+|+ |++|++|+.||.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 4557899999996 3665653 8999999999998877766678999999999998 79999999999999999
Q ss_pred CCCCe-eeEEecCCCCceEEEEe--------CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC----CEEEEE----E
Q 011916 238 GTQCK-RVRTFGGHQTRAGVLAW--------NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS----EVCGLK----W 300 (475)
Q Consensus 238 ~~~~~-~~~~~~~h~~~v~~l~~--------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~----~ 300 (475)
+.+++ .+..+.+|...|.++.| ++.+|++++.||.|++||++.....+..+..|.+ .|.++. |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99988 88899999999999965 3579999999999999999965556777766655 799998 7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC---CCCcEEEEecCCCCCeEEEEECCCCceeeee--
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP---HQSSLLASGGGTADRCIRFWNTSNGHQLNSV-- 375 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-- 375 (475)
++++++|++++.|+.|++||+++++... ...|...|.+++|+| ++..+++ ++ .|+.|++||+++++.+..+
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVA-TS--LEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEE-EE--STTEEEEEEEEEEETTTEEEE
T ss_pred CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEE-EC--CCCeEEEEeCcCCCcccceee
Confidence 8899999999999999999999988754 456889999999999 7885555 43 7999999999887665444
Q ss_pred ----cCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCC-------------------ceEEEecCCCcceEEEEEC
Q 011916 376 ----DTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSM-------------------AKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 376 ----~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~-------------------~~~~~l~~h~~~V~~l~~s 431 (475)
.+...|.+++|+|+++ ++++ ++.||.|++||+.+. +.+..+.+|...|.+++|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 4778999999999999 5666 789999999998753 4677888999999999999
Q ss_pred CCCCEEE-EEeCCCCEEEEecCCCC
Q 011916 432 PDGQTIV-TGAGDETLRFWNVFPSL 455 (475)
Q Consensus 432 pdg~~l~-s~s~Dg~I~iW~~~~~~ 455 (475)
|++++|+ +++.||.|++|++....
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 89999999999998654
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.9e-37 Score=302.09 Aligned_cols=278 Identities=18% Similarity=0.325 Sum_probs=237.4
Q ss_pred CCCceeEEecCC----C--CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC----CCEEEEEeCCCe
Q 011916 167 DDFYLNLVDWSS----Q--NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE----GSYISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws~----~--~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd----g~~la~g~~dg~ 232 (475)
+.-.|.+++|+| . .+++++.++.|++|++.+++....+.. .|...|.+++|+|+ |++|++|+.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 455789999996 2 378888889999999998776554431 36688999999998 679999999999
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEe---cCccCCEEEEEEcCCCCE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKL---AGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~s~~~~~ 306 (475)
|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++ .+..+..+ ..|...|.+++|+|++++
T Consensus 97 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred EEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEecccccccCceeEEEECCCCCE
Confidence 9999999999999999999999999994 5899999999999999998 55666666 689999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEe----------------------------ccccceeEEEECCCCCcEEEEecCCCC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLT----------------------------EHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~----------------------------~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
|++++.||.|++||+++++.+..+. .|...|.+++|+ +. ++++++ .|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~--~d 250 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKS--CE 250 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEEC--SS
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEe--cC
Confidence 9999999999999999775443332 389999999999 44 566654 89
Q ss_pred CeEEEEECCCCce--------------eeee-cCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCCCc----eEEE
Q 011916 359 RCIRFWNTSNGHQ--------------LNSV-DTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPSMA----KVST 417 (475)
Q Consensus 359 ~~I~iwd~~~~~~--------------~~~~-~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~~----~~~~ 417 (475)
+.|++||+.++.. +..+ .+...|.+++|+|+ +++|++ |+.||.|++||+.+++ ....
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccccceE
Confidence 9999999988754 4444 35678999999999 999998 8899999999999875 4557
Q ss_pred ecCC--CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 418 LTGH--SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 418 l~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 7877 7999999999999999999999999999985
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=303.76 Aligned_cols=276 Identities=14% Similarity=0.238 Sum_probs=246.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+++ . +++++.++.|++|+ .+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 447899999987 3 56666799999999 5666666554 788999999999999999999999999999999999999
Q ss_pred EecCCCCc---------------eEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 246 TFGGHQTR---------------AGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 246 ~~~~h~~~---------------v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
.+..+... +.+++|. +..+++++.||.|++||++ ....+..+..|...|.+++|+|++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT-CSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC-CCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 99888776 8889994 5789999999999999998 56777788899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcC
Q 011916 310 GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSK 388 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 388 (475)
++.|+.|++||+++++.+..+..|...|.+++|+|++ ++++++ .|+.|++||+.+++.+..+. +...+.+++|+|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999999999999999999999999999999999 455544 79999999999999888875 578899999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCc--------------------eEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCE
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMA--------------------KVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
++++|++ ++.+|.|++||+.+++ .+..+.+|.. .|.+++|+|++++|++++.||.|
T Consensus 341 ~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 341 DGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp TSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred CCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 9999998 7889999999999888 8999999977 99999999999999999999999
Q ss_pred EEEecC
Q 011916 447 RFWNVF 452 (475)
Q Consensus 447 ~iW~~~ 452 (475)
++|++.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999986
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.5e-36 Score=294.68 Aligned_cols=258 Identities=17% Similarity=0.345 Sum_probs=227.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
+|.+.|.+++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +.+|++|+.|+.|++||+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 899999999999999999999999999999999999999999999999999994 6899999999999999997543
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.....+.+|...|.++.|++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++. ++++|+ .|+.|
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~--~d~~v 208 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA--CDASA 208 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCE
T ss_pred ceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe--CCCcE
Confidence 3456688999999999999877 589999999999999999999999999999999999999998 455554 89999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~ 438 (475)
++||++++.++..+. +...|.+++|+|++++|++ |+.|+.|++||+.+++.+..+.. +...|.+++|+|+|++|+
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 999999999988885 6778999999999999998 88999999999999988877753 345799999999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+|+.|+.|++||+........+. +...+.++.
T Consensus 287 ~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 99999999999998776655443 444554443
No 37
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-36 Score=299.31 Aligned_cols=275 Identities=16% Similarity=0.231 Sum_probs=229.9
Q ss_pred CCCceeEEecCCCC---EEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 011916 167 DDFYLNLVDWSSQN---VLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~~---~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~ 241 (475)
+.-.+.+++|+++. +++++.|+.|+|||+.+++....+.. +|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~- 150 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG- 150 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-
Confidence 34568999999864 56666799999999999988777764 6899999999999 789999999999999999986
Q ss_pred eeeEEecC---CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCc
Q 011916 242 KRVRTFGG---HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQ 315 (475)
Q Consensus 242 ~~~~~~~~---h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~ 315 (475)
..+..+.. |...|.+++|+ +.+|++|+.|+.|++||++ +..+..+.+|...|.+++|+|+++ +|++|+.|+.
T Consensus 151 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 228 (383)
T 3ei3_B 151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT 228 (383)
T ss_dssp CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence 55555544 44789999994 6899999999999999994 567788899999999999999999 9999999999
Q ss_pred EEEEECCC----CceeEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeeeec-C-------C----
Q 011916 316 LLVWNQHS----QQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-T-------G---- 378 (475)
Q Consensus 316 I~iwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~-------~---- 378 (475)
|++||+++ +..+..+ .|...|.+++|+| ++..|++ ++ .|+.|++||+.+++.+..+. + .
T Consensus 229 i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-TD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-EE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-Ec--CCCcEEEEECCCCccccccccccccccccccceE
Confidence 99999997 5555555 6999999999999 8886555 43 79999999999987765553 1 1
Q ss_pred ------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 379 ------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 379 ------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..+..++|+|++++ + |+.|+.|++||+.+++.+..+.+ |...+..++|+|++.+|++|+ |+.|+|||
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred EeccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 23444566666665 3 67899999999999999999987 567788889999999999997 99999999
Q ss_pred cCC
Q 011916 451 VFP 453 (475)
Q Consensus 451 ~~~ 453 (475)
+.+
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 874
No 38
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-35 Score=312.09 Aligned_cols=289 Identities=25% Similarity=0.476 Sum_probs=246.2
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
...+++++|+++ .+++++.++.|++|+... +....+. +|...|.+++|+|++++|++++.||.|++||... +.+.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~ 338 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQ 338 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeE
Confidence 456889999987 366677799999999754 4445444 7899999999999999999999999999999764 5567
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+.+|...|.+++|+ +.+|++|+.|+.|++||.. +..+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 788999999999994 6899999999999999964 5677888999999999999999999999999999999995 5
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...|.+++|+|+++.|++ ++ .|+.|++||.. ++.+..+ .+...|.+++|+|++++|++ ++.|+
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las--~~~d~ 489 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIAS-AS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDK 489 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEE--EETTS
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEE-Ec--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCC
Confidence 6778888999999999999999996555 43 79999999974 5555554 57789999999999999998 78999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC-cccCCcccccc
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA-LVKDTSLWSLG 470 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~-~~~~~~v~s~~ 470 (475)
.|++||. +++.+..+.+|...|++++|+|||++|++++.||.|++||.. ++.... ..|...|+++.
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEE
Confidence 9999995 688899999999999999999999999999999999999964 333333 33455665554
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.8e-36 Score=295.55 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=237.1
Q ss_pred CCceeEEecCCC-CEEEEE-cCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.-.+.+++|+++ ++++++ .++.|++||+.+++ ....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 345888999987 555555 79999999999987 555554 7899999999999999999999999999999988875
Q ss_pred eEEe--cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 244 VRTF--GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 244 ~~~~--~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
...+ ..|...|.+++|+ +++|++++.|+.|++||++.... .......|...|.+++|+|++++|++++.|+.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 5443 6799999999995 68999999999999999985442 233346789999999999999999999999999
Q ss_pred EEEECC------------------CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-C
Q 011916 317 LVWNQH------------------SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-T 377 (475)
Q Consensus 317 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~ 377 (475)
++||++ .++.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.+++++..+. +
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VS--HDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EE--TTTEEEEEEGGGTTEEEEEECS
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE-Ee--CCCEEEEEECCCCceeEEEccC
Confidence 999953 67788888899999999999999985555 43 79999999999999988885 4
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--Cce--------------------------------E------EE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAK--------------------------------V------ST 417 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~--------------------------------~------~~ 417 (475)
...+.+++|+|++.++++ | .|+.|++|++.+ ++. . ..
T Consensus 244 ~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp SCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred CCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 568999999999998877 6 899999999987 321 0 22
Q ss_pred e-cCCCcceEEEEEC-CCC---CEEEEEeCCCCEEEEecCCCC
Q 011916 418 L-TGHSLRVLYLATS-PDG---QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 418 l-~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ .+|...|++++|+ ++| .+|++|+.||.|++|++...+
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 3 4899999999966 677 999999999999999997643
No 40
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.8e-36 Score=305.11 Aligned_cols=282 Identities=24% Similarity=0.394 Sum_probs=240.4
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
..+.++++..+.+++++.|+.|++||..+++....+. +|...|.+++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 3577899977788888999999999999999888876 78999999998 78999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|...|.+++|+++.|++|+.||.|++||++..... ...+.+|...|.+++| ++++|++|+.||.|++||+++++.
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999999999999999999999999999854432 2678899999999999 788999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+..+..|...|.+++|+ +. ++++|+ .|+.|++||+.+++++..+. +...|.+++| ++..|++ |+.||.|+
T Consensus 289 ~~~~~~~~~~v~~~~~~--~~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~dg~i~ 359 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAYDGKIK 359 (435)
T ss_dssp EEEEECCSSCEEEEEEE--TT-EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EETTSCEE
T ss_pred EEEEcCCCCcEEEEEeC--CC-EEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeCCCcEE
Confidence 99999999999999994 44 566654 89999999999999998886 6678999998 7788888 88999999
Q ss_pred EEECCCCc---------eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcc
Q 011916 406 VWKYPSMA---------KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 406 iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
+||+.++. .+..+.+|.+.|.+++| ++.+|++++.||+|++||+...............
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 427 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPS 427 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------
T ss_pred EEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCc
Confidence 99997665 78899999999999999 7889999999999999999988766655444433
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-36 Score=292.44 Aligned_cols=291 Identities=20% Similarity=0.225 Sum_probs=244.8
Q ss_pred ceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---
Q 011916 170 YLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--- 244 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--- 244 (475)
.+.+++|+++ .+++++. ++.+.+|.......... ..+|...|++++|+|++++|++++ ||.|++||+.+++..
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 4677999997 5655554 55566665444332222 237899999999999999999999 999999999876533
Q ss_pred EEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 245 RTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 245 ~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
..+. +|...|.+++|+ +++|++++.|+.|++||++.... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 3333 789999999995 68999999999999999984432 456678899999999999999999999999999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
|+++++.+..+..|...|.+++|+|++..+++.+ .|+.|++||+++++.+..+.+...+.+++|+|+++.+++ +.
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~ 243 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG---LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GM 243 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EE
T ss_pred eCCCCceeeeeecccCceEEEEECCCCCEEEEEe---cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE--Ec
Confidence 9999999999999999999999999998665543 799999999999999999999999999999999999998 78
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcccc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWS 468 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s 468 (475)
.++.|++||+.+.+. ..+..|...|.+++|+|++++|++++.||.|++|++..+.......+...+.+
T Consensus 244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~ 311 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 311 (337)
T ss_dssp TTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEE
Confidence 899999999998775 46778999999999999999999999999999999998876654445554443
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.6e-35 Score=284.00 Aligned_cols=256 Identities=22% Similarity=0.396 Sum_probs=227.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+ +++|++|+.|+.|++||++ ....
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~ 99 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKC 99 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-CCcE
Confidence 899999999999999999999999999999999999999999999999999995 6899999999999999998 5677
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++..+++ ++ .|+.|++|
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~~w 176 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SS--YDGLCRIW 176 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE-Ee--CCCcEEEE
Confidence 8889999999999999999999999999999999999999999999999999999999999985554 43 79999999
Q ss_pred ECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE---EEEECCCCCEEEE
Q 011916 365 NTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL---YLATSPDGQTIVT 439 (475)
Q Consensus 365 d~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg~~l~s 439 (475)
|+.+++.+..+. +...+..++|+|++++|++ +..|+.|++||+.+++.+..+.+|...+. .....+++.+|++
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred ECCCCceeeEEeccCCCceEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 999999887763 4567999999999999999 88999999999999999999998876543 2334468899999
Q ss_pred EeCCCCEEEEecCCCCCCCCcc-cCCcccc
Q 011916 440 GAGDETLRFWNVFPSLKAPALV-KDTSLWS 468 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s 468 (475)
|+.||.|++||+..+.....+. +...+++
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 9999999999999887665543 3334443
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-36 Score=307.85 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=224.1
Q ss_pred CCceeEEecCCC--CEE-EEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe
Q 011916 168 DFYLNLVDWSSQ--NVL-AVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~~--~~l-a~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+-.|++|+|+|. ++| +++.||.|+|||+.+++......+ +|.+.|++|+|+| ++++|++|+.||+|+|||++++.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 456999999983 445 556699999999998876555443 7999999999998 78999999999999999998765
Q ss_pred eeEEecC--CCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 011916 243 RVRTFGG--HQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~~~~~--h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~ 317 (475)
....... +...+.+++| ++.+|++|+.||.|++||++ +..+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 5444433 3445778888 56899999999999999996 355667889999999999999876 788999999999
Q ss_pred EEECCCCceeE---EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeeEEEEc
Q 011916 318 VWNQHSQQPTL---RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------SQVCNLAWS 387 (475)
Q Consensus 318 iwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s 387 (475)
|||+++.+... ...+|...|.+++|+|++.+|++ ++ .|+.|++||+.++.+...+... ..+....|+
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-EE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEE-Ec--CCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 99998765433 33568999999999999996655 43 7999999999998877665311 124456778
Q ss_pred CCCCeEEEEE----------ecCCCeEEEEECCCCceEEEec-CCCcceEEE-EECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 388 KNVNELVSTH----------GYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYL-ATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 388 ~~~~~l~~~~----------g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++..+++.. +..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++.++.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 8777776631 1234679999999999998875 588888887 6999999999876 8899999998876
Q ss_pred CC
Q 011916 456 KA 457 (475)
Q Consensus 456 ~~ 457 (475)
..
T Consensus 433 ~r 434 (435)
T 4e54_B 433 TR 434 (435)
T ss_dssp --
T ss_pred ee
Confidence 43
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.5e-35 Score=288.69 Aligned_cols=260 Identities=18% Similarity=0.315 Sum_probs=228.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
+|.+.|.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+ +.+|++|+.|+.+.+|++....
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999994 6899999999999999986331
Q ss_pred ---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC-CcEEEEecCCCC
Q 011916 283 ---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ-SSLLASGGGTAD 358 (475)
Q Consensus 283 ---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d 358 (475)
.....+.+|...|.++.|++++..|++++.|++|++||+++++.+..+.+|...|.+++|+|+. ..++++|+ .|
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs--~D 219 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG--CD 219 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE--TT
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe--CC
Confidence 3456677899999999999999999999999999999999999999999999999999998853 23666655 89
Q ss_pred CeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC--CcceEEEEECCCCC
Q 011916 359 RCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH--SLRVLYLATSPDGQ 435 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~ 435 (475)
+.|++||+++++++..+. +...|.+++|+|++..|++ |+.|+.|++||+.+.+.+..+..+ ...+.+++|+|+|.
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 999999999999988885 6788999999999999998 889999999999998887777643 45789999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCCc-ccCCcccccc
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLG 470 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~ 470 (475)
+|++|+.|++|++||+..+.....+ .+...++++.
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEE
Confidence 9999999999999999877655443 3444554443
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-35 Score=283.70 Aligned_cols=243 Identities=18% Similarity=0.322 Sum_probs=207.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+.|.+++|+|+|++||+|+.||+|+|||+.. .+.+.++.+|...|.+++|+ +++|++|+.|++|++||++.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 7899999999999999999999999999999874 46788999999999999994 68999999999999999984
Q ss_pred CC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCC---------
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQ--------- 346 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~--------- 346 (475)
.. ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ....+..|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 32 355678889999999999997 8899999999999999998763 245677899999999999973
Q ss_pred ---CcEEEEecCCCCCeEEEEECCCCc----eeeee-cCCCCeeEEEEcCCC---CeEEEEEecCCCeEEEEECCCCc--
Q 011916 347 ---SSLLASGGGTADRCIRFWNTSNGH----QLNSV-DTGSQVCNLAWSKNV---NELVSTHGYSQNQIMVWKYPSMA-- 413 (475)
Q Consensus 347 ---~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~-~~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~-- 413 (475)
..++++|+ .|+.|++||+++++ ....+ .|...|.+++|+|++ .+|++ ++.|+.|+|||+.+..
T Consensus 167 ~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 167 TKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp ---CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTTSC
T ss_pred CCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCCCCc
Confidence 23666665 89999999998876 44445 367889999999995 66777 8899999999997643
Q ss_pred -eEEEe--cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 414 -KVSTL--TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 414 -~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
....+ ..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 22233 46888999999999999999999999999999863
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.8e-35 Score=297.76 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=250.8
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|.+++|++++ +|++|+.||+|++||+.+++.+..+.+|
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH 202 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence 56788888888888999999999999999888776 899999999999988 9999999999999999999999999999
Q ss_pred CCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc----------------------cEEEecCccCCEEEEEEcCCC
Q 011916 251 QTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD----------------------YICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 251 ~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~----------------------~~~~~~~h~~~V~~l~~s~~~ 304 (475)
...|.+++|. +.+|++|+.||.|++||++.... ....+.+|...|.++ ++++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 9999999984 47999999999999999985432 255778899999887 5678
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeE
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCN 383 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~ 383 (475)
++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++..+++ |+ .|+.|++||+.+++++..+. +...|.+
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS-AS--MDTTIRIWDLENGELMYTLQGHTALVGL 357 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE-EE--TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCcEEEEEeCCCCcEEE
Confidence 89999999999999999999999999999999999999999996555 43 89999999999999998885 6788999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC--cc
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA--LV 461 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~--~~ 461 (475)
+.|+ ++++++ ++.||.|++||+.++....... |...+..++|++++.+|++++ ||.|++||+.+++.... ..
T Consensus 358 ~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 358 LRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp EEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred EEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 9997 577887 8899999999999988776664 667788899999999999998 89999999999887654 34
Q ss_pred cCCccccccC
Q 011916 462 KDTSLWSLGR 471 (475)
Q Consensus 462 ~~~~v~s~~~ 471 (475)
+...++++..
T Consensus 432 ~~~~v~~v~~ 441 (464)
T 3v7d_B 432 DADQIWSVNF 441 (464)
T ss_dssp TCSEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 4555665543
No 47
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=297.31 Aligned_cols=278 Identities=14% Similarity=0.290 Sum_probs=238.6
Q ss_pred CceeEEecCCC-C--EEEEEcCCeEEEEEC----CCCc------EEEEeeC---------CCCCcEEEEEEcCCCCEEEE
Q 011916 169 FYLNLVDWSSQ-N--VLAVGLGTCVYLWTA----SNSK------VTRLCDL---------GPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 169 ~~v~~l~ws~~-~--~la~~~~~~V~lw~~----~~~~------~~~~~~~---------~~~~~V~~v~~spdg~~la~ 226 (475)
-.+.+++|+|+ . +++++.++.|++|++ .+++ ....+.. +|.+.|++++|+|++++|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 35788999986 4 455556899999999 8887 3433331 15679999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC----------
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE---------- 294 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~---------- 294 (475)
|+.||.|++|| .+++.+..+.+|...|.+++|+ +.+|++++.|+.|++||+. .+..+..+..+...
T Consensus 126 ~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 126 GVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEEECCC-------------
T ss_pred EeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEEeeccccCccceeecccc
Confidence 99999999999 7788889999999999999994 6899999999999999998 56677777777776
Q ss_pred -----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 295 -----VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 295 -----V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+.++.|++++ .+++++.|+.|++||+.+++.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS-AS--DDGTLRIWHGGNG 279 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE-EE--TTSCEEEECSSSB
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE-Ec--CCCEEEEEECCCC
Confidence 9999999875 6889999999999999999999999999999999999999995555 43 7999999999999
Q ss_pred ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
+.+..+. +...+.+++|+|++ .+++ +..++.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 8888875 77889999999999 7776 778999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 011916 449 WNVFPSL 455 (475)
Q Consensus 449 W~~~~~~ 455 (475)
|++....
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9998665
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-36 Score=301.58 Aligned_cols=276 Identities=13% Similarity=0.155 Sum_probs=232.3
Q ss_pred eEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..++|+++ .+++++.++.|++||..+++....+. ....+....|++++++|++|+.||.|++||+.+++....+.+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 34777775 68888889999999998876544332 234555667899999999999999999999999999999899
Q ss_pred CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
|...|.+++|+ +++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999995 6799999999999999998 56677888999999999999999999999999999999999999988
Q ss_pred EEEecc---c---------------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCe
Q 011916 328 LRLTEH---T---------------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQV 381 (475)
Q Consensus 328 ~~~~~h---~---------------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v 381 (475)
..+..| . ..+.+++|+|++..+++ ++ .|+.|++||+++++.+..+. +...+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-GH--VSGVITVHNVFSKEQTIQLPSKFTCSC 293 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-EE--TTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-Ec--CCCeEEEEECCCCceeEEcccccCCCc
Confidence 888753 3 44455556788885554 43 79999999999999887774 56789
Q ss_pred eEEEEcCCCC-eEEEEEecCCCeEEEEECCCCce-EEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 382 CNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAK-VSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 382 ~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+++|+|++. +|++ |+.||.|++||+.+++. +..+.+ |...|.++.+ +++.+|++++.|+.|++|++.....
T Consensus 294 ~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 294 NSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred eeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999999 7777 88999999999998754 677766 6677888755 5788999999999999999987543
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-36 Score=301.22 Aligned_cols=260 Identities=17% Similarity=0.316 Sum_probs=224.0
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD 270 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d 270 (475)
|+..+......+. +|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++| ++.+|++|+.|
T Consensus 51 ~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred cccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 4444444445554 89999999999999999999999999999999999999999999999999999 46899999999
Q ss_pred CcEEEEECCCCC------ccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE-----ecccccee
Q 011916 271 RNILQHDLRVSS------DYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRL-----TEHTAAVK 338 (475)
Q Consensus 271 g~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~-----~~h~~~v~ 338 (475)
+.|++||+.... .....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999986321 234567899999999999996 457999999999999999999988777 57899999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 416 (475)
+++|++.+..++++|+ .|+.|++||++ .++.+..+ .|...|.+++|+|++++|++ |+.|+.|++||+.+++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEE
Confidence 9999885555777766 89999999998 44666666 47788999999999999998 8899999999999999988
Q ss_pred EecCCCc-------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 417 TLTGHSL-------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 417 ~l~~h~~-------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+..+.. .|.+++|+|+|++|++|+.||.|++||+..+...
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 8865432 4899999999999999999999999999876644
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-34 Score=293.80 Aligned_cols=285 Identities=22% Similarity=0.399 Sum_probs=250.8
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
..+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 120 ~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 120 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3456788888888889999999999999999887776 889999999997 6799999999999999999999999999
Q ss_pred CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 249 ~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
+|...|.+++|+++.|++|+.||.|++||++ .+..+..+.+|...|.++.| ++++|++|+.|+.|++||+++++.+.
T Consensus 197 ~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESS-SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCCCcEEEEEecCCEEEEEeCCCEEEEEECC-CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999999999999999999999999998 56778888999999999999 78899999999999999999999999
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+..|...|.+++| ++.. +++++ .|+.|++||+.+++++..+. +...+.++.++ ++.+++ |+.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~--~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGIH-VVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS--GNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE--CSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE--EETTSCEEEE
T ss_pred EecCCCCceEEEEE--CCCE-EEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEE--EeCCCeEEEE
Confidence 99999999999999 5664 44544 79999999999999988875 55667777764 667877 8899999999
Q ss_pred ECCCCceEEEecC---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc------ccCCcccccc
Q 011916 408 KYPSMAKVSTLTG---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL------VKDTSLWSLG 470 (475)
Q Consensus 408 d~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~------~~~~~v~s~~ 470 (475)
|+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||+..+.....+ .+...++++.
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 9999999999986 88899999995 679999999999999999988766554 3344555554
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=311.95 Aligned_cols=264 Identities=9% Similarity=0.114 Sum_probs=214.4
Q ss_pred EcCCeEEEEECCCCcEEE----EeeCCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee-----------
Q 011916 185 GLGTCVYLWTASNSKVTR----LCDLGPGDSVCSVQWTRE------GSYISVGTNLGQVQVWDGTQCKR----------- 243 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~----~~~~~~~~~V~~v~~spd------g~~la~g~~dg~v~iwd~~~~~~----------- 243 (475)
+.|+.|+||++.+++... .+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 347789999998876421 122 56788999999996 57999999999999999986642
Q ss_pred eEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE--EEcCCC-CEEEEEeCCCcEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL--KWSHDD-RELASGGNDNQLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--~~s~~~-~~lasg~~Dg~I~iw 319 (475)
...+.+|...|.+++|+ +..|++|+.||+|++||++........+.+|...|.++ .|++++ ++||+|+.|++|+||
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 24678899999999995 57999999999999999985555566788999999999 578887 899999999999999
Q ss_pred ECCCCceeEEEecccc--ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEE
Q 011916 320 NQHSQQPTLRLTEHTA--AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~ 396 (475)
|+++++++..+.+|.. .|.+++|+|++..++ +++ .|++|++||++++.++..+ .|...|.+++|+|+++.|++
T Consensus 339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~-s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S- 414 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI-YSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA- 414 (524)
T ss_dssp CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE-EEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE-
T ss_pred ECCCCCcccccccccccCcccceEeCCCcCeEE-EeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE-
Confidence 9999887777777653 588999999998654 443 7999999999999886655 57889999999999999998
Q ss_pred EecCCCeEEEEECCC--------------------------------------------CceEEEecCCCcceEEEEECC
Q 011916 397 HGYSQNQIMVWKYPS--------------------------------------------MAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~--------------------------------------------~~~~~~l~~h~~~V~~l~~sp 432 (475)
|+.|+.|++||+.. +..+..+.+|...|.+++|+|
T Consensus 415 -gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 415 -GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp -EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred -EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 88999999987421 112334557889999999999
Q ss_pred CCC---EEEEEeCCCCEEEEecCCC
Q 011916 433 DGQ---TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 433 dg~---~l~s~s~Dg~I~iW~~~~~ 454 (475)
++. .||+|+.||+|+||++...
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCccHHHHhhccCceEEEEEcccc
Confidence 954 9999999999999998754
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=285.39 Aligned_cols=244 Identities=21% Similarity=0.381 Sum_probs=209.0
Q ss_pred CCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE---EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGD-SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR---TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~-~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~---~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+ .|.+++|+|+|++||+|+.||+|+|||+.++.... ...+|...|.+++|+ +++|++|+.|++|++||+..
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 6766 89999999999999999999999999998876432 236899999999995 68999999999999999974
Q ss_pred CC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ---PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.. ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++.+. .+..+..|...|.+++|+|++..|++ ++
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s-- 169 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS-AS-- 169 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE-EE--
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE-Ee--
Confidence 43 4567889999999999999999999999999999999998764 45677789999999999999996555 43
Q ss_pred CCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---------------CceEEEe
Q 011916 357 ADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS---------------MAKVSTL 418 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---------------~~~~~~l 418 (475)
.|+.|++||+.++.. ...+ .+...|.+++|+|++++|++ |+.|+.|++||... ...+..+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 899999999988753 3344 46788999999999999998 88999999999632 1334556
Q ss_pred cC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 419 TG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 419 ~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+ |...|.+++|++++..|++++.|+.|++|++....
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 55 88999999999999999999999999999998654
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=301.44 Aligned_cols=277 Identities=11% Similarity=0.160 Sum_probs=228.6
Q ss_pred CCCceeEEecCC-C--CEEEEEcCCeEEEEECCC---CcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSS-Q--NVLAVGLGTCVYLWTASN---SKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~-~--~~la~~~~~~V~lw~~~~---~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+.-.|.+++|++ + .+++++.|+.|+|||+.+ +... .....+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 345799999999 5 366667799999999876 4311 12223688999999999999999999999999999984
Q ss_pred ---CCeeeEEecC------------CCCceEEEEe----CCCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEE
Q 011916 240 ---QCKRVRTFGG------------HQTRAGVLAW----NSRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGL 298 (475)
Q Consensus 240 ---~~~~~~~~~~------------h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l 298 (475)
+++.+..+.+ +...+.++.+ ++.+|++|+.|+.|++||++ ....+..+.. |...|.++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEEEECCGGGCCEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEEEccCCCCCceEEE
Confidence 4444433321 5566777774 37899999999999999998 5667777777 89999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECC----CCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSP----HQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp----~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
+|+|++++|++|+.||.|++||+++++++..+. .|...|.+++|+| ++. ++++++ .|+.|++||+.+++++.
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~--~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGS--SKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEES--TTEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEc--CCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999999988886 7888999997775 444 566655 89999999999998877
Q ss_pred eec---------------------------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC------
Q 011916 374 SVD---------------------------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG------ 420 (475)
Q Consensus 374 ~~~---------------------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~------ 420 (475)
.+. +...|.+++|+ ++++|++ |+.|+.|++||+.+++.+..+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 374 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPSRFSD 374 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC--CCC
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEecccccCc
Confidence 764 33458889999 7778887 88999999999999887777665
Q ss_pred -------------------------------CCcceEEEEECCC--CCEEEEEeCCCCEEEEe
Q 011916 421 -------------------------------HSLRVLYLATSPD--GQTIVTGAGDETLRFWN 450 (475)
Q Consensus 421 -------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~I~iW~ 450 (475)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 375 VFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999995
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=301.92 Aligned_cols=281 Identities=17% Similarity=0.283 Sum_probs=234.9
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCC----CcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASN----SKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~----~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~ 239 (475)
....+.+++|+++ .+++++.++.|++|++.+ .+....+. +|...|.+++|+|+ +++|++|+.||.|++||+.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 3456889999986 356666799999999988 33444443 78999999999998 8999999999999999998
Q ss_pred CCe------eeE---EecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCc------cCCEEEEEEc
Q 011916 240 QCK------RVR---TFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGH------KSEVCGLKWS 301 (475)
Q Consensus 240 ~~~------~~~---~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~s 301 (475)
+++ ... .+..|...|.+++|+ +.+|++++.||.|++||++ ....+..+..| ...|.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcceEEeccccccccCCceEEEEEC
Confidence 876 333 346799999999995 4799999999999999998 56666777766 7899999999
Q ss_pred CCC-CEEEEEeCCC---cEEEEECCCC-ceeEEEe-ccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 302 HDD-RELASGGNDN---QLLVWNQHSQ-QPTLRLT-EHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 302 ~~~-~~lasg~~Dg---~I~iwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
|++ .+|++++.|+ .|++||++++ .++..+. .|...|.+++|+| ++..| ++++ .|+.|++||+.+++++..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l-~s~~--~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL-LSSG--RDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE-EEEE--SSSEEEEECSSSCCEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE-EEEe--CCCCEEEeeCCCCcccee
Confidence 987 6999999998 9999999986 6677777 8999999999999 66654 4444 799999999999999888
Q ss_pred ec-CCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEec---------------------------------
Q 011916 375 VD-TGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLT--------------------------------- 419 (475)
Q Consensus 375 ~~-~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--------------------------------- 419 (475)
+. +...|.+++|+|++ ..|++ ++.|+.|++||+.+........
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred ecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 75 67889999999999 67777 8899999999998765322111
Q ss_pred --CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 420 --GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 420 --~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.|...+.+++|+|||++|++++.|++|+||++.+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999999864
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-34 Score=290.19 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=246.9
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
...+.+++|+++.+++++.|+.|++||+.+++....+. +|...|.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 34578899998888888999999999999998887775 789999999995 678999999999999999999999999
Q ss_pred cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 248 GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 248 ~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
.+|...|.+++|++.+|++|+.||.|++||++ ....+..+.+|...|.++.| ++.++++|+.|+.|++||+++++.+
T Consensus 236 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE-TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp ECCSSCEEEEEECSSCEEEEETTSCEEEEEGG-GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cCCcccEEEEEECCCEEEEEcCCCEEEEEECC-CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 99999999999999999999999999999998 56778889999999999999 7889999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
..+..|...+.++.+++ . ++++++ .|+.|++||+.+++++..+. +...|.+++|+ ++++++ |+.||.
T Consensus 313 ~~~~~~~~~v~~~~~~~--~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~ 383 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKD--N-ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGT 383 (445)
T ss_dssp EEECCCCSCEEEEEEET--T-EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSE
T ss_pred EEEcCCcccEEEEEEeC--C-EEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE--EeCCCe
Confidence 99999999999998854 4 555554 89999999999999998885 66789999996 577887 889999
Q ss_pred EEEEECCCCceEEEe-----cCCCcceEEEEECCCCCEEEEEeCCCC----EEEEecCCCC
Q 011916 404 IMVWKYPSMAKVSTL-----TGHSLRVLYLATSPDGQTIVTGAGDET----LRFWNVFPSL 455 (475)
Q Consensus 404 I~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----I~iW~~~~~~ 455 (475)
|++||+.+++.+..+ .+|.+.|.+++|+|++.+|++|+.||+ |.+||+....
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999999998888 468899999999999999999999998 9999998653
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.5e-35 Score=293.05 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=230.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+....|+++ .+++++.++.|++||+.+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 3444566665 46666679999999999988776654 78999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecC---ccCCEEE---------------------EEEc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAG---HKSEVCG---------------------LKWS 301 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~---------------------l~~s 301 (475)
.+|...|.+++|+ +.+|++++.|+.|++||++ .+..+..+.. |...|.+ ++|+
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 9999999999994 6899999999999999998 5566666654 3344444 4557
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeec--C
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVD--T 377 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~--~ 377 (475)
|++++|++|+.||.|++||+++++.+..+.. |...|.+++|+|++..++++++ .|+.|++||+++++. +..+. +
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEEST
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccC
Confidence 8999999999999999999999988777654 8899999999999996666665 899999999998754 55553 5
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------ceEEEecCCCcceEEEEECCCCC---EEEEEeCCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---------AKVSTLTGHSLRVLYLATSPDGQ---TIVTGAGDET 445 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~ 445 (475)
...+.++.| ++++.|++ ++.|+.|++|++... .....+..|...|.+++|+|+++ .|++++.+|.
T Consensus 335 ~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~ 411 (420)
T 3vl1_A 335 GTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF 411 (420)
T ss_dssp TSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred CCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce
Confidence 667777755 57778887 889999999998763 22334667899999999999999 7888888999
Q ss_pred EEEEecCC
Q 011916 446 LRFWNVFP 453 (475)
Q Consensus 446 I~iW~~~~ 453 (475)
+.+|++..
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 99999865
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-34 Score=288.91 Aligned_cols=255 Identities=23% Similarity=0.446 Sum_probs=217.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC------------------ceEEEEeC--CCEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT------------------RAGVLAWN--SRILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~--~~~l~s 266 (475)
+|...|.+++|+|+|++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+ +++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6889999999999999999987 58999999999998888765542 48899994 689999
Q ss_pred EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-C
Q 011916 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-H 345 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~ 345 (475)
|+.|+.|++||+. ..+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+. +...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 9999999999998 567788899999999999999999999999999999999999998877765 567899999999 6
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----
Q 011916 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----- 412 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----- 412 (475)
+. ++++|+ .|+.|++||+.+++.+..+ .+...|.+++|+|++++|++ |+.|+.|++||+.+.
T Consensus 219 ~~-~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 219 GK-YIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp CC-EEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC--------
T ss_pred CC-EEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECCCCCCccc
Confidence 66 566655 8999999999999887766 35678999999999999998 889999999999753
Q ss_pred -------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCccccc
Q 011916 413 -------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSL 469 (475)
Q Consensus 413 -------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~ 469 (475)
.....+.+|...|.+++|++++.+|++|+.|+.|++||+..+.....+. +...++++
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 3456778999999999999999999999999999999998877655443 34445444
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-36 Score=299.18 Aligned_cols=275 Identities=18% Similarity=0.223 Sum_probs=214.8
Q ss_pred CceeEEecCCC-CEEEEE-cCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--
Q 011916 169 FYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-- 242 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-- 242 (475)
-.|.+++|+++ ++++++ .++.|+||++.++. ....+. +|...|.+++|+|++++|++|+.||.|+|||+.+++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 35888999987 555555 79999999999884 444443 789999999999999999999999999999999877
Q ss_pred -eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc--cEEEecC-ccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 243 -RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD--YICKLAG-HKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 243 -~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
....+.+|...|.+++|+ +++|++|+.|+.|++||++.... ....+.. |...|.+++|+|++++|++++.|+.|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 677788999999999995 68999999999999999985432 4667777 99999999999999999999999999
Q ss_pred EEEECC------------------CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eee
Q 011916 317 LVWNQH------------------SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ----LNS 374 (475)
Q Consensus 317 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~----~~~ 374 (475)
++||+. .++++..+ .|...|.+++|+|++++|++.+ .|+.|++||+.+++. +..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG---HDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE---TTTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe---CCCcEEEEECCCCCCcceeeEe
Confidence 999985 24455556 8999999999999999666543 799999999999987 555
Q ss_pred e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------------eE------EE
Q 011916 375 V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------------------------KV------ST 417 (475)
Q Consensus 375 ~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------------~~------~~ 417 (475)
+ .+...|.+++|+|++++|++ |..++.+ +|+..... .+ ..
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAA--GYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEE--ESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred ecCCCCceEEEEEcCCCCEEEE--EcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 5 46678999999999998887 6555555 77654111 00 00
Q ss_pred e----------------cCCCcceEEEEECCCC-C---EEEEEeCCCCEEEEec
Q 011916 418 L----------------TGHSLRVLYLATSPDG-Q---TIVTGAGDETLRFWNV 451 (475)
Q Consensus 418 l----------------~~h~~~V~~l~~spdg-~---~l~s~s~Dg~I~iW~~ 451 (475)
+ ..|...|+++++.++. . .|+||+.||.|+|||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 1299999999976543 3 6999999999999986
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=284.61 Aligned_cols=286 Identities=21% Similarity=0.279 Sum_probs=232.2
Q ss_pred CCCceeEEecCC-C-C-EEEEEcCCeEEEEECCCCcEEEEee------------CCCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 167 DDFYLNLVDWSS-Q-N-VLAVGLGTCVYLWTASNSKVTRLCD------------LGPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 167 ~d~~v~~l~ws~-~-~-~la~~~~~~V~lw~~~~~~~~~~~~------------~~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
+.-.+++++|+| + + +++++.|+.|++|++.+++...... .+|...|.+++|+| ++.+|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345688999998 5 3 6666779999999999876544332 14889999999999 78899999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
|.|++||+.+++.+..+. +...+.++.|. +.++++++.|+.|.+||++ ....+..+..|...|.+++|+|++.
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-CcceeeeecCCCCcEEEEEECCCCC
Confidence 999999999999888876 77788888884 3599999999999999998 5677788899999999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCc-eeEEE---------------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 306 -ELASGGNDNQLLVWNQHSQQ-PTLRL---------------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 306 -~lasg~~Dg~I~iwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+|++|+.||.|++||++.+. .+..+ ..|...|.+++|+|++.++++.+ .|+.|++||+.+
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~ 276 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---TDNRMRLWNSSN 276 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec---CCCeEEEEECCC
Confidence 59999999999999998765 34444 56889999999999999666543 799999999999
Q ss_pred CceeeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 369 GHQLNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 369 ~~~~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
++....... ...+........+..+++ +..++.|++||+.+++.+..+.+|...|++++|+|++++|++++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF--VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE--EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred CccceeccccccccccccceeEEecCCCceEEE--EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence 877654421 112222223334455555 557899999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCC
Q 011916 443 DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~ 459 (475)
||.|++|++...+....
T Consensus 355 dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TSCEEEEEECC------
T ss_pred CCeEEEEeCCCCCccCC
Confidence 99999999998876554
No 60
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.9e-35 Score=294.35 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=233.2
Q ss_pred CceeEEecCCCCEEE---EEcCCeEEEEECCCCcE----EEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 011916 169 FYLNLVDWSSQNVLA---VGLGTCVYLWTASNSKV----TRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 169 ~~v~~l~ws~~~~la---~~~~~~V~lw~~~~~~~----~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~ 240 (475)
...+.++++++.+.. ++.+|.|+||++..... ...+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 345568888875333 35589999999966422 1222 27899999999999 999999999999999999998
Q ss_pred C-------eeeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEE
Q 011916 241 C-------KRVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 241 ~-------~~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~la 308 (475)
+ +.+..+.+|...|.+++|+ + ++|++++.||.|++||++ .+..+..+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 7 6678899999999999995 3 689999999999999998 56777777 78999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEE-eccccc-eeEEEECCCCCcEEEEe-cCCCCCeEEEEECCCCce---eeeecCCCCee
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRL-TEHTAA-VKAIAWSPHQSSLLASG-GGTADRCIRFWNTSNGHQ---LNSVDTGSQVC 382 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~ll~sg-~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~ 382 (475)
+++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++. ++++| .++.|+.|++||+.+++. ...+.+...+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 9999999999999999998888 678776 89999999988 45554 113799999999998765 33345678899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++|+|+++.|+++ |..|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 272 ~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 272 LPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 99999999999764 66799999999998874 444443 5689999999999998764 57799999998754
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9e-34 Score=275.80 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=213.2
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQ-----CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|.+++|+|++ ++|++|+.||+|++|++.. +..+..+.+|...|.+++| ++.+|++|+.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 899999999999965 8999999999999999853 3457788999999999999 4689999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC-----cEEEEe
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS-----SLLASG 353 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-----~ll~sg 353 (475)
+ .++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. ..+..+.+|...|.+++|+|... .+++++
T Consensus 95 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 A-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp T-TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred C-CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 8 6677888999999999999999999999999999999999974 56778889999999999999643 256665
Q ss_pred cCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+ .|+.|++||+.+++....+ .|...|.+++|+|++++|++ |+.||.|++||+.+++.+..+..+ ..|.+++|+|
T Consensus 173 ~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 247 (319)
T 3frx_A 173 G--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS--AGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247 (319)
T ss_dssp E--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS
T ss_pred e--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC
Confidence 5 8999999999999887776 47789999999999999999 889999999999999999888754 6799999999
Q ss_pred CCCEEEEEeCCCCEEEEecCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.+|++++.+ .+++|++....
T Consensus 248 ~~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 248 NRYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp SSSEEEEEETT-EEEEEEETTEE
T ss_pred CCCEEEEEcCC-CcEEEEeCcCe
Confidence 99999988765 49999987653
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=292.13 Aligned_cols=277 Identities=10% Similarity=0.217 Sum_probs=223.5
Q ss_pred CCCCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCc-----------EEEEeeCCCC------------CcEEEEEEcC
Q 011916 165 LQDDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSK-----------VTRLCDLGPG------------DSVCSVQWTR 219 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~-----------~~~~~~~~~~------------~~V~~v~~sp 219 (475)
+.+.-.|.+++|+++ . +++++.|+.|+||++.+++ ....+. +|. +.|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcC
Confidence 445567999999997 4 5555679999999999876 344454 777 8899999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------EE-ecCCCCceEEE
Q 011916 220 EG--SYISVGTNLGQVQVWDGTQCKRV---------------------------------------RT-FGGHQTRAGVL 257 (475)
Q Consensus 220 dg--~~la~g~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l 257 (475)
++ .+|++++.||.|++||+.+++.. .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999998764432 12 36899999999
Q ss_pred EeC--CCEEEEEeCCCcEEEEECCCCCccEE-------EecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-
Q 011916 258 AWN--SRILSSGSRDRNILQHDLRVSSDYIC-------KLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQP- 326 (475)
Q Consensus 258 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~- 326 (475)
+|+ +++|++| .|+.|++||++....... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 995 6899998 899999999984444443 256899999999999998 9999999999999999999886
Q ss_pred ---eEEEecccc------------ceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCC----------
Q 011916 327 ---TLRLTEHTA------------AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGSQ---------- 380 (475)
Q Consensus 327 ---~~~~~~h~~------------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~~---------- 380 (475)
+..+..|.. .|.+++|+|++.+|+ +++ . +.|++||+++ ++++..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM-TRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE-EEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEE-Eee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 788888876 899999999999655 443 5 9999999997 888777754433
Q ss_pred ------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---------------------------------C
Q 011916 381 ------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---------------------------------H 421 (475)
Q Consensus 381 ------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---------------------------------h 421 (475)
+..++|+|++++|++ |+.||.|++||+.+++.+. +.+ +
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred ccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccccc
Confidence 334999999999988 8899999999999887653 222 3
Q ss_pred CcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 422 SLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 422 ~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
...|..++|+|++.+||+++.++ +++|.-
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 45689999999999999998776 777764
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=277.74 Aligned_cols=247 Identities=22% Similarity=0.382 Sum_probs=202.1
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEe-cC-CCCceEEEEeC--CCEEEEEeCCCc
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTF-GG-HQTRAGVLAWN--SRILSSGSRDRN 272 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~--~~~l~sgs~dg~ 272 (475)
+....+. +|.+.|.+++|+++ +||+|+.||+|+|||+..+ +.+..+ .+ |...|.+++|+ +.+|++|+.|++
T Consensus 5 ~~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3444554 89999999999987 9999999999999999875 455566 44 99999999995 689999999999
Q ss_pred EEEEECCCC------CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEeccccceeEEEE
Q 011916 273 ILQHDLRVS------SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS----QQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 273 I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----~~~~~~~~~h~~~v~~l~~ 342 (475)
|++||+... ...+..+.+|...|.+++|+|++++||+|+.|++|++||++. .+.+..+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999998532 245677889999999999999999999999999999999953 2456778899999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCC--ceeeee-cCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCCC-----
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSV-DTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPSM----- 412 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~-~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~----- 412 (475)
+|++.. +++++ .|+.|++||..++ +++..+ .|...|.+++|+|+ +..|++ |+.|+.|++||+...
T Consensus 162 ~p~~~~-l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSEAL-LASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSSSE-EEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTSC
T ss_pred CCCCCE-EEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCcccc
Confidence 999985 45544 8999999998776 566666 46789999999998 556776 889999999998654
Q ss_pred ---ceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 413 ---AKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 413 ---~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.....+.+ |...|.+++|++++ +|++++.||+|++|++..+
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34455555 99999999999765 8999999999999998765
No 64
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-35 Score=286.42 Aligned_cols=244 Identities=20% Similarity=0.355 Sum_probs=202.8
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECC
Q 011916 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~ 279 (475)
.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|. +++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 3899999999999999999999999999999998774 467889999999999994 6899999999999999998
Q ss_pred CCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCC-------
Q 011916 280 VSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQ------- 346 (475)
Q Consensus 280 ~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~------- 346 (475)
... .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+..|...|.+++|+|+.
T Consensus 90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 432 356678899999999999997 78999999999999999987632 33456789999999999983
Q ss_pred ---------CcEEEEecCCCCCeEEEEECCCC---ceeeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEEEEEC
Q 011916 347 ---------SSLLASGGGTADRCIRFWNTSNG---HQLNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 347 ---------~~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd~ 409 (475)
..++++|+ .|+.|++||+.++ +++..+ .|...|.+++|+|++ +.|++ ++.|+.|++|++
T Consensus 170 ~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~~ 245 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWTC 245 (316)
T ss_dssp -CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEEC
T ss_pred cccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEEc
Confidence 13566654 8999999999765 344444 367789999999987 66777 889999999998
Q ss_pred CCCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 410 PSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 410 ~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+.. ....+..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7631 2234556889999999999999999999999999999863
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-33 Score=275.71 Aligned_cols=243 Identities=23% Similarity=0.372 Sum_probs=203.8
Q ss_pred CCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEECCC-------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCC
Q 011916 207 GPGDSVCSVQW-----TR-EGSYISVGTNLGQVQVWDGTQ-------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR 271 (475)
Q Consensus 207 ~~~~~V~~v~~-----sp-dg~~la~g~~dg~v~iwd~~~-------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg 271 (475)
+|.+.|++++| ++ ++++|++|+.||+|+|||+.+ +.....+.+|...|.+++|+ +.+|++|+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 89999999999 77 999999999999999999874 34567788999999999995 68999999999
Q ss_pred cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCCC-
Q 011916 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQS- 347 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~- 347 (475)
+|++||++ .+..+..+.+|...|.+++|+|++++|++|+.|+.|++||+... ...... .|...|.+++|+|++.
T Consensus 99 ~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 99 TLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp EEEEEETT-SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred cEEEEECC-CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccc
Confidence 99999998 56778889999999999999999999999999999999999843 333333 6888999999999873
Q ss_pred --------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE
Q 011916 348 --------SLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVST 417 (475)
Q Consensus 348 --------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~ 417 (475)
.++++++ .|+.|++||. +++....+ .+...|.+++|+|++++|++ |+.|+.|++||+.. ......
T Consensus 177 ~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 177 ANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEEEEESSCCSSCSEE
T ss_pred ccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEEEEECCCCccccee
Confidence 3566655 8999999995 44554444 57789999999999999999 88999999999944 334444
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+. +...|.+++|+|++.+|+++ .|+.|++|++.+.....
T Consensus 252 ~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 252 FD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred ec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence 43 45679999999999887654 68889999998766543
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-33 Score=308.46 Aligned_cols=283 Identities=18% Similarity=0.276 Sum_probs=251.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+|+ . +++++.+|.|+|||+.+++....+. .|...|.+++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 345899999997 4 5555668999999999999888876 789999999999999999999999999999999999999
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+.+|...|.+++|+ +.+|++++.||.|++||+.........+.+|...|.+++|+| +++.|++++.||.|++||+.
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999995 679999999999999999866677888899999999999999 88999999999999999999
Q ss_pred CCceeEEEeccc-cceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEe
Q 011916 323 SQQPTLRLTEHT-AAVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 323 ~~~~~~~~~~h~-~~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.+.....+..+. ..+..++|+| ++..++ +++ .|+.|++||+.+++.+..+. +...|.+++|+|+++.+++ +
T Consensus 172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 246 (814)
T 3mkq_A 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--G 246 (814)
T ss_dssp CSSCSEEEECCCTTCCCEEEECCSTTCCEEE-EEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--E
T ss_pred CCcceeEEecCCCCCEEEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE--E
Confidence 888887777655 8899999999 887544 444 79999999999999888886 6788999999999999998 8
Q ss_pred cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCCCCCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+.||.|++||+.+++.+..+..|...|.+++|+|+|. +++++ .|+.+.+|++......
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 8999999999999999999999999999999999987 45544 5677899998765543
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-33 Score=274.47 Aligned_cols=246 Identities=18% Similarity=0.329 Sum_probs=213.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|.+++|+ +.+|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 89999999999999999999999999999999876 5677788999999999994 689999999999999999
Q ss_pred CCCC--------ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEe-------------cccc
Q 011916 279 RVSS--------DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQPTLRLT-------------EHTA 335 (475)
Q Consensus 279 ~~~~--------~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~~~~~~-------------~h~~ 335 (475)
+... ..+..+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+. .|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 8543 457778899999999999999 9999999999999999999876543332 5778
Q ss_pred ceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEE
Q 011916 336 AVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIM 405 (475)
Q Consensus 336 ~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~ 405 (475)
.+.+++|+|+ +. ++++++ .|+.+.+|+...++. +..+ .+...|.+++|+|++ ++|++ |+.||.|+
T Consensus 169 ~~~~~~~~p~~~~~~-~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~ 243 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPE-KLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIR 243 (351)
T ss_dssp CCEEEEECCCSSSCC-EEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEE
T ss_pred ceeEEEeccCCCCCc-EEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEE
Confidence 8999999997 66 555544 799998888887765 3444 367889999999998 67777 88999999
Q ss_pred EEECCCC----------------------------------------------ceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 406 VWKYPSM----------------------------------------------AKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 406 iwd~~~~----------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
+||+.++ +.+..+.+|...|++++|+|++++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9999764 667788899999999999999999999
Q ss_pred EeCCCCEEEEecCCCCCC
Q 011916 440 GAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~ 457 (475)
++.||.|+||++..+...
T Consensus 324 ~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EETTSCEEEEEECTTSCE
T ss_pred ecCCCcEEEEecCcCcch
Confidence 999999999999876544
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-33 Score=297.61 Aligned_cols=281 Identities=16% Similarity=0.278 Sum_probs=248.5
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCC----cEEEEeeCCCCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS----KVTRLCDLGPGDS-VCSVQWTR--EGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~----~~~~~~~~~~~~~-V~~v~~sp--dg~~la~g~~dg~v~iwd~ 238 (475)
....+.+++|+|+ ++++++.++.|++|++.++ +....+. +|... |++++|+| ++++|++|+.||.|+|||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 3456788999997 6788878999999999988 7666665 78899 99999999 9999999999999999999
Q ss_pred CCC--------eeeEEecCCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 239 TQC--------KRVRTFGGHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 239 ~~~--------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
.++ +.+..+..|...|.+++|+ +++|++++.+ +.|.+||. ...+..+.+|...|.+++|+|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCC
Confidence 754 7777888999999999994 6899999988 68888883 45778889999999999999999
Q ss_pred C-EEEEEeCCCcEEEEECCCCceeEEEecccc---ceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeee----
Q 011916 305 R-ELASGGNDNQLLVWNQHSQQPTLRLTEHTA---AVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSV---- 375 (475)
Q Consensus 305 ~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~---~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---- 375 (475)
. .|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +..+++ ++ .|+.|++||+.+++.+..+
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~--~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT-VG--SDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE-EE--TTCCEEEEETTTCCEEEECCBTT
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE-Ee--CCCeEEEEECCCCCEeEEecccc
Confidence 8 899999999999999999999999999999 9999999999 875554 43 7999999999999999988
Q ss_pred -cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC----CcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH----SLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 376 -~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+...|.+++|+ +++.|++ ++.|+.|++||+.+++.+..+..+ ...+.++.|+ ++.+|++++.||.|++||
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEE--EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred cccCCceEEEEEc-CCCEEEE--EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence 678899999999 9999998 778999999999999999988876 4678888886 899999999999999999
Q ss_pred cCCCCCCC
Q 011916 451 VFPSLKAP 458 (475)
Q Consensus 451 ~~~~~~~~ 458 (475)
+..+....
T Consensus 326 ~~~~~~~~ 333 (615)
T 1pgu_A 326 LGHDEVLK 333 (615)
T ss_dssp TTEEEEEE
T ss_pred CCCCcEEE
Confidence 98755433
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.7e-33 Score=283.53 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=239.2
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT--REGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s--pdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+...+.+++|+++ .+++++.|+.|++||+.+++....+. +|...|.+++|+ +++++|++|+.||.|++||+.++..
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 4557899999987 56677779999999999999887775 789999999998 5789999999999999999987652
Q ss_pred -----------------------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE
Q 011916 244 -----------------------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 244 -----------------------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 300 (475)
+..+.+|...|.++..++++|++|+.||.|++||++ ....+..+.+|...|.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCEEEEEE
Confidence 556789999999999999999999999999999998 67788889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~ 380 (475)
+|++++|++|+.||.|++||+++++++..+.+|...|.+++|++ . .+++++ .|+.|++||+.++.......+...
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~ 393 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-FLVSAA--ADGSIRGWDANDYSRKFSYHHTNL 393 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-EEEEEE--TTSEEEEEETTTCCEEEEEECTTC
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-EEEEEe--CCCcEEEEECCCCceeeeecCCCC
Confidence 99999999999999999999999999999999999999999984 4 555554 899999999999998888888888
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+..++|+++++.+++ |. +|.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 394 ~~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 394 SAITTFYVSDNILVS--GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEEEEECSSEEEE--EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 999999999999888 65 89999999999999886 66799999999997 3344555566766555543
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-33 Score=317.94 Aligned_cols=279 Identities=22% Similarity=0.335 Sum_probs=251.7
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+...+.+++|+++ . +++++.|+.|++||+.+++....+. +|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 3456899999997 3 5556779999999999999888776 89999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 245 RTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
..+.+|...|.+++|+ +.++++|+.|+.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 9999999999999994 3589999999999999998 5677888999999999999999999999999999999999
Q ss_pred CCCCceeEEEec-------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEE
Q 011916 321 QHSQQPTLRLTE-------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLA 385 (475)
Q Consensus 321 ~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~ 385 (475)
+.+++....+.. +...+.+++|+|++..++++ .++.+.+||+.++..+..+ .+...+.+++
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE----ETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE----cCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 998877665532 23478899999999966665 3789999999999988877 4678899999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
|+|+++.+++ ++.++.|++||+.++..+..+.+|...|.+++|+|+|.+|++++.||+|++|++..
T Consensus 848 ~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 848 FSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp ECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 9999999999 88999999999999999999999999999999999999999999999999999864
No 71
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-33 Score=284.84 Aligned_cols=255 Identities=21% Similarity=0.437 Sum_probs=219.1
Q ss_pred CCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CeeeEEecCCCCceEEEEeCC--C-
Q 011916 197 NSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ----------CKRVRTFGGHQTRAGVLAWNS--R- 262 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~--~- 262 (475)
++++.......|.+.|++++|+|+ +.+||+|+.+|.|+|||+.+ .+.+..+.+|...|.+++|++ .
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 334443444478899999999997 78999999999999999976 677888899999999999963 4
Q ss_pred EEEEEeCCCcEEEEECCCCCc------cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEEec
Q 011916 263 ILSSGSRDRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ---QPTLRLTE 332 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~ 332 (475)
+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999985322 1456778999999999999 7889999999999999999987 57788889
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|...|.+++|+|++.+++++|+ .|+.|++||+++ +.++..+. +...|.+++|+|+++.++++ ++.|+.|++||+.
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWDLS 352 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEEGG
T ss_pred CCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEeCC
Confidence 9999999999999998888876 899999999998 45566664 77899999999999765444 6789999999997
Q ss_pred C--------------CceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCC
Q 011916 411 S--------------MAKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 411 ~--------------~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~ 454 (475)
. .+.+..+.+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 6 367788889999999999999999 9999999999999999754
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=277.66 Aligned_cols=247 Identities=18% Similarity=0.324 Sum_probs=211.1
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEE
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQ 275 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~i 275 (475)
..+. +|.+.|++++|+|++++||+|+.||.|+|||+. +.+.+..+.+|...|.+++|+ +.+|++|+.||.|++
T Consensus 5 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 5 VIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 3444 789999999999999999999999999999998 667788899999999999995 789999999999999
Q ss_pred EECCCCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECC------
Q 011916 276 HDLRVSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSP------ 344 (475)
Q Consensus 276 wd~~~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp------ 344 (475)
||++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||++... ....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9998432 266778889999999999999 9999999999999999999773 4456678999999999999
Q ss_pred -------CCCcEEEEecCCCCCeEEEEECCCCcee----eee-cCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEEC
Q 011916 345 -------HQSSLLASGGGTADRCIRFWNTSNGHQL----NSV-DTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 345 -------~~~~ll~sg~Gs~d~~I~iwd~~~~~~~----~~~-~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~ 409 (475)
++. ++++++ .|+.|++||++++... ..+ .+...|.+++|+|+ +++|++ ++.||.|++||+
T Consensus 164 ~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTC-EEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEE
T ss_pred ccccCCCCCC-EEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEEeC
Confidence 466 455544 8999999999877533 333 36788999999999 788888 789999999999
Q ss_pred CCCc---eEEEe--cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 410 PSMA---KVSTL--TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 410 ~~~~---~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++. ....+ ..|...|.+++|+|+|++|++++.||.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8864 22223 348899999999999999999999999999999843
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=309.19 Aligned_cols=296 Identities=12% Similarity=0.178 Sum_probs=228.6
Q ss_pred CCceeEEecCCCC-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--
Q 011916 168 DFYLNLVDWSSQN-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-- 244 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-- 244 (475)
...|.+++|+++. +++++.|+.|+|||+.+++....+. +.+.|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 4568999999976 7777889999999999998877764 5688999999999999999999999999999988764
Q ss_pred ---------EEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCc------------------cCC
Q 011916 245 ---------RTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGH------------------KSE 294 (475)
Q Consensus 245 ---------~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------------------~~~ 294 (475)
..+.+|...|.+++|++ ..|++|+.||.| +||++ ....+..+..| ...
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecccCCcCCCcccccccccccCCC
Confidence 23467999999999975 589999999999 99998 55666666655 577
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--Ee---c-------------cccceeEEEEC----CCCCcE---
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR--LT---E-------------HTAAVKAIAWS----PHQSSL--- 349 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~--~~---~-------------h~~~v~~l~~s----p~~~~l--- 349 (475)
|.+++|+|+|++||+|+.|+.|++||+++++++.. +. . |...|.+++|+ |++..+
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 99999999999999999999999999987766542 10 1 22345555552 222122
Q ss_pred --------------------------------------------------------------------------------
Q 011916 350 -------------------------------------------------------------------------------- 349 (475)
Q Consensus 350 -------------------------------------------------------------------------------- 349 (475)
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence
Q ss_pred ----------------------------------------------------------------------------EEEe
Q 011916 350 ----------------------------------------------------------------------------LASG 353 (475)
Q Consensus 350 ----------------------------------------------------------------------------l~sg 353 (475)
+++|
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence 2222
Q ss_pred cCCCCCeEEEEECCCCceee----ee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------
Q 011916 354 GGTADRCIRFWNTSNGHQLN----SV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--------- 412 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~----~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--------- 412 (475)
+ .|++|++||+.++.... .. .+...|.+++|+|++++|++ |+.||.|+|||+.++
T Consensus 454 s--~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 454 H--SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp E--TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC-------
T ss_pred c--CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCccccC
Confidence 2 45555555555442110 00 24457999999999999999 889999999999765
Q ss_pred ------------------------------------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 413 ------------------------------------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 413 ------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++..+.+|.+.|++|+|+||| +||+|+.|++|+|||+.....
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 2467888999999999999999 999999999999999876543
Q ss_pred CC-----Cc--ccCCccccccCc
Q 011916 457 AP-----AL--VKDTSLWSLGRT 472 (475)
Q Consensus 457 ~~-----~~--~~~~~v~s~~~~ 472 (475)
.. .. .+...|+++.++
T Consensus 609 ~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 609 IYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEEGGGTCSSCCCCEEEEEEE
T ss_pred EEEeehhHhccccccceEEEEEE
Confidence 21 11 344557766654
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-33 Score=293.36 Aligned_cols=275 Identities=16% Similarity=0.233 Sum_probs=228.7
Q ss_pred ceeEEecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 170 YLNLVDWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 170 ~v~~l~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.+.+++|+++ .+++++.++.|++||+.+++....+.. .|...|.+++|+ ++++|++++.||.|++||+.+++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 6889999987 366667799999999999998877743 788999999999 999999999999999999999999
Q ss_pred eEEecCC----CCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC---------------
Q 011916 244 VRTFGGH----QTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD--------------- 303 (475)
Q Consensus 244 ~~~~~~h----~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~--------------- 303 (475)
+..+..+ ...+.++.| ++.++++++.||.|++||+. ....+..+.+|...|.+++| |+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG-HDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT-EEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC-CCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence 9998876 367778888 78999999999999999997 35555555555554444444 22
Q ss_pred --------------------------------------------------------------------------------
Q 011916 304 -------------------------------------------------------------------------------- 303 (475)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (475)
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence
Q ss_pred -----------CCEEEEEeC-CCcEEEEECCCCcee-EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 304 -----------DRELASGGN-DNQLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 304 -----------~~~lasg~~-Dg~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
+++|++++. |+.|++||+..++.. ..+..|...|.+++|+|++++|++ ++ .|+.|++||+.+++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~--~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA-GD--VMGKILLYDLQSRE 521 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTTTE
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE-cC--CCCeEEEeeCCCCc
Confidence 344555555 666666666655443 455668899999999999995555 43 79999999999999
Q ss_pred eeeeec--CCCCeeEEEEcC----------CCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEE
Q 011916 371 QLNSVD--TGSQVCNLAWSK----------NVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 371 ~~~~~~--~~~~v~~l~~s~----------~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
.+..+. +...|.+++|+| ++++|++ ++.||.|++||+.++ +.+..+.+|...|++++|+|+++ |
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 598 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEE--EcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-e
Confidence 998876 788999999999 9999998 889999999999998 78889999999999999999999 9
Q ss_pred EEEeCCCCEEEEecCC
Q 011916 438 VTGAGDETLRFWNVFP 453 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~ 453 (475)
++++.||+|++|++..
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999975
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-33 Score=279.17 Aligned_cols=280 Identities=13% Similarity=0.128 Sum_probs=212.2
Q ss_pred CCCceeEEecCCC-CEEEEEcC--------CeEEEEECCCCcE--------EEEeeC-CCCCcEEEEEEcCCCCEEEEEe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLG--------TCVYLWTASNSKV--------TRLCDL-GPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~--------~~V~lw~~~~~~~--------~~~~~~-~~~~~V~~v~~spdg~~la~g~ 228 (475)
-.|.|.+++|+|+ .+|++|.+ +.|++|++..+.. ...+.+ ++.+.|.+++++ ++.+++|.
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 3567999999997 45555432 2599999876532 122223 567788887764 56677664
Q ss_pred -----------CCCeEEEEECCCCee----eEEe-----cCCCCceEEEEe--CCCEEEEE--eCCCcEEEEECCCCCcc
Q 011916 229 -----------NLGQVQVWDGTQCKR----VRTF-----GGHQTRAGVLAW--NSRILSSG--SRDRNILQHDLRVSSDY 284 (475)
Q Consensus 229 -----------~dg~v~iwd~~~~~~----~~~~-----~~h~~~v~~l~~--~~~~l~sg--s~dg~I~iwd~~~~~~~ 284 (475)
.|+.+++|++.+... +... ..+...+.+++| +|++|+++ +.|++|+|||++ ....
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-DLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-TTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-CCcE
Confidence 467899998765422 1111 134456778888 56776644 478999999998 5555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCCCC---
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADR--- 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--- 359 (475)
+..+. |...|.+++|+|||++|++++. +.+.+|+..+++.+.. ...|...|.+++|+|++..+++.+ .|+
T Consensus 170 ~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~ 244 (365)
T 4h5i_A 170 KFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGKG 244 (365)
T ss_dssp EEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCC
T ss_pred EEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCcce
Confidence 55554 7788999999999999999985 4577777777765543 345888999999999999766654 344
Q ss_pred -eEEEEECCCCcee----eee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-cCCCcceEEEEECC
Q 011916 360 -CIRFWNTSNGHQL----NSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-TGHSLRVLYLATSP 432 (475)
Q Consensus 360 -~I~iwd~~~~~~~----~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp 432 (475)
.+++|++..+... ..+ .+...|.+++|+|+|++|++ |+.|+.|+|||+.+++.+..+ .+|...|++|+|+|
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence 6889998776542 222 46678999999999999999 889999999999999999885 78999999999999
Q ss_pred CCCEEEEEeCCCCEEEEecCCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
||++||||+.|++|+||++.....
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTTTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCc
Confidence 999999999999999999965443
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.3e-33 Score=271.90 Aligned_cols=272 Identities=13% Similarity=0.088 Sum_probs=229.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEC-
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDG- 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~- 238 (475)
+.-.|.+++|+++ .+++++.++.|++|++.++. ..... +|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3456889999986 36666779999999999887 43333 7889999999999999 9999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeC-CCEEEEEeCCCcEEEEECCCC--------CccEEEecCccCCEEEEEEcCCCCEE
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWN-SRILSSGSRDRNILQHDLRVS--------SDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
.+++. ..+.+ |...|.+++|+ +.+|++++.|+.|++||++.. ...+..+. |...|.+++|++++ +
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l 163 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--L 163 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--E
T ss_pred cCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--E
Confidence 77655 67788 99999999997 799999999999999999730 33333344 88999999999887 9
Q ss_pred EEEeCCCcEEEEECCC-Cce--eEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCC------ceeeeecC
Q 011916 308 ASGGNDNQLLVWNQHS-QQP--TLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNG------HQLNSVDT 377 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~------~~~~~~~~ 377 (475)
++++.|+.|++||++. +.. ......|...|.+++|+| ++..+++ ++ .|+.|++|++... +....+..
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC-SS--IDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE-EE--TTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred EEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE-Ee--cCCcEEEEEEcCCCcccccccceeeec
Confidence 9999999999999998 543 334456888999999999 9885555 43 7999999999876 66666542
Q ss_pred ----------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEEeCCCC-
Q 011916 378 ----------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTGAGDET- 445 (475)
Q Consensus 378 ----------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~- 445 (475)
...|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.||+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 238999999999999998 889999999999999999999998 99999999 99999999999998
Q ss_pred EEEEec
Q 011916 446 LRFWNV 451 (475)
Q Consensus 446 I~iW~~ 451 (475)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555553
No 77
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-33 Score=279.99 Aligned_cols=256 Identities=18% Similarity=0.251 Sum_probs=216.3
Q ss_pred CCCcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeCC---CEEEEEeC
Q 011916 196 SNSKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWNS---RILSSGSR 269 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~~---~~l~sgs~ 269 (475)
...+....+. +|...|.+++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|++ ++|++++.
T Consensus 61 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 61 KSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp TTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3444444443 789999999999999 999999999999999999888777765 6999999999954 79999999
Q ss_pred CCcEEEEECCCCCccEEEecC---ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 270 DRNILQHDLRVSSDYICKLAG---HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
|+.|++||++. ..+..+.. |...|.+++|+|++++|++|+.|+.|++||+ .++.+..+..|...|.+++|+|++
T Consensus 140 d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 140 RGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC
T ss_pred CCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC
Confidence 99999999983 44444443 4478999999999999999999999999999 577888999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCC----CceeeeecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCC
Q 011916 347 SSLLASGGGTADRCIRFWNTSN----GHQLNSVDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~----~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 421 (475)
..++++++ .|+.|++||+++ +.++..+.+...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.+|
T Consensus 217 ~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 217 DWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT--TDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp TTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE--EESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE--EcCCCcEEEEECCCCccccccccc
Confidence 97777765 899999999998 67788888899999999999 9999998 788999999999988776666644
Q ss_pred C-----------------cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 422 S-----------------LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 422 ~-----------------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
. ..+..++|+|||++ +++.|+.|++||+..+.....+.
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 3 33445666777766 77899999999999887665543
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-33 Score=279.06 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=218.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEe--C----C---CEEEEEeCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAW--N----S---RILSSGSRDR 271 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~--~----~---~~l~sgs~dg 271 (475)
+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++| + + .+|++++.||
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 7999999999998 799999999999999999887 78888899999999999 4 6 7999999999
Q ss_pred cEEEEECCCCCcc-----EEEecCc-----cCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CceeE--
Q 011916 272 NILQHDLRVSSDY-----ICKLAGH-----KSEVCGLKWS----HDDRE-LASGGNDNQLLVWNQHS------QQPTL-- 328 (475)
Q Consensus 272 ~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~s----~~~~~-lasg~~Dg~I~iwd~~~------~~~~~-- 328 (475)
.|++||+.. ... ...+..| ...|.+++|+ |++++ |++++.||.|++||+.. ++.+.
T Consensus 92 ~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 92 DLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 999999984 444 7778888 5999999999 99999 99999999999999998 66665
Q ss_pred ---EE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeeEEEEcCCCC
Q 011916 329 ---RL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-------GSQVCNLAWSKNVN 391 (475)
Q Consensus 329 ---~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~ 391 (475)
.+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|+|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 66 4488999999999999 555554 899999999999999988865 88999999999999
Q ss_pred eEEEEEecCC---CeEEEEECCCCceEEEecC-------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 392 ELVSTHGYSQ---NQIMVWKYPSMAKVSTLTG-------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 392 ~l~~~~g~~d---g~I~iwd~~~~~~~~~l~~-------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+|++ ++.+ +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||+..+.
T Consensus 247 ~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 247 LLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9998 7778 9999999999999999998 99999999999999999999999999999998876
Q ss_pred CCCCcc
Q 011916 456 KAPALV 461 (475)
Q Consensus 456 ~~~~~~ 461 (475)
....+.
T Consensus 325 ~~~~~~ 330 (397)
T 1sq9_A 325 RITTLN 330 (397)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 655543
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-32 Score=313.53 Aligned_cols=295 Identities=20% Similarity=0.273 Sum_probs=251.8
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+...|.+++|+++ .+++++.|+.|++||+.+++....+. +|...|.+++|+| ++.++++|+.||.|++||+.+++
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 3456899999987 36666679999999999999888876 7899999999999 55689999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc------------------------------------
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY------------------------------------ 284 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~------------------------------------ 284 (475)
.+..+.+|...|.+++|+ +.+|++|+.||.|++||++.....
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 999999999999999994 689999999999999998633110
Q ss_pred -----------------E-EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 285 -----------------I-CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 285 -----------------~-~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
. ....+|...|.+++|+|++.++++++.|+.|++||+.++..+..+.+|...|.+++|+|++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 0 1122678899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCce-----------------------------e---------eeecCCCCeeEEEEcC
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQ-----------------------------L---------NSVDTGSQVCNLAWSK 388 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~-----------------------------~---------~~~~~~~~v~~l~~s~ 388 (475)
..+++++ .|+.|++||+.++.. + ........+.+++|+|
T Consensus 895 ~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 895 SSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp SEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 9666543 799999999653210 0 0012345799999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCccc
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~ 467 (475)
+++++++ |+.+|.|++||+.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|++..+.......+...+.
T Consensus 972 ~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 972 HLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp TSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred CCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE
Confidence 9999999 8899999999999999999999999999999999999999999999999999999877655444444443
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-32 Score=263.22 Aligned_cols=238 Identities=19% Similarity=0.362 Sum_probs=198.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~ 241 (475)
.-.|.+++|+++ .+++++.|+.|+||++.+. +....+. +|.+.|.+++|++ ++++|++|+.||+|+|||+.++
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 446888999986 4666777999999999754 4444444 8999999999986 4899999999999999999887
Q ss_pred e--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCC-----------
Q 011916 242 K--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHD----------- 303 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~----------- 303 (475)
+ .+..+.+|...|.+++|+ +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 4 566788999999999995 56999999999999999985432 24667899999999999997
Q ss_pred --CCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCCC--CcEEEEecCCCCCeEEEEECCCCc---ee
Q 011916 304 --DRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQ--SSLLASGGGTADRCIRFWNTSNGH---QL 372 (475)
Q Consensus 304 --~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~--~~ll~sg~Gs~d~~I~iwd~~~~~---~~ 372 (475)
+++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ ..++++++ .|++|++||+.++. ..
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEE
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccce
Confidence 5799999999999999998765 556788999999999999996 45677765 89999999998753 11
Q ss_pred eee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 373 NSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 373 ~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
..+ .+...|.+++|+|+++.|++ ++.|+.|++|+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 222 35678999999999999998 7789999999976
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-34 Score=284.15 Aligned_cols=240 Identities=16% Similarity=0.206 Sum_probs=202.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC-
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS- 282 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~- 282 (475)
+.+.|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|...|.+++|+ +++|++++.|+.|++||+....
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 4578999999999999999999999999999988 7888899999999999995 6899999999999999998433
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEec-cccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ---PTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~---~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+..|...|.+++|+|++++|++|+.|+.|++||++.++ ....+.. |...|.+++|+|++..|+ +++ .
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~--~ 166 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA-AGC--A 166 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE-EEE--S
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE-EEe--C
Confidence 2567788899999999999999999999999999999999877 4677777 999999999999998554 444 7
Q ss_pred CCeEEEEECC------------------CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----E
Q 011916 358 DRCIRFWNTS------------------NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK----V 415 (475)
Q Consensus 358 d~~I~iwd~~------------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~----~ 415 (475)
|+.|++||+. .++++..+.+...|.+++|+|++++|++ ++.|+.|++||+.+++. +
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY--AGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE--EETTTEEC-CEECSTTSCEEEC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE--EeCCCcEEEEECCCCCCcceee
Confidence 9999999985 3445555567788999999999999999 88999999999999887 7
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.+|...|.+++|+|++++|++++.|+.+ +|+...
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 8888999999999999999999988766655 776653
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-32 Score=276.81 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=228.9
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCc---EEEEeeC---------------------------------------
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---VTRLCDL--------------------------------------- 206 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---~~~~~~~--------------------------------------- 206 (475)
.+.+++|+++ .+++++.++.|++||+.+++ ....+..
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4678889986 68888889999999999998 5444431
Q ss_pred --------------CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeEEec--CCCCceEEEEeC--CCEEE
Q 011916 207 --------------GPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGT--QCKRVRTFG--GHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 207 --------------~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~--~~~~~~~~~--~h~~~v~~l~~~--~~~l~ 265 (475)
+|.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+ +.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 122369999999999996 889999999999999 888888876 577899999995 68999
Q ss_pred EEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-Eecccccee
Q 011916 266 SGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHD---DRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVK 338 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~~~~~-~~~h~~~v~ 338 (475)
+|+.+|.|.+|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 999999999999974332 22366789999999999999 99999999999999999999988877 558999999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------------------------CCCeeEEEEcCCCCe
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------------------------GSQVCNLAWSKNVNE 392 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------------------------~~~v~~l~~s~~~~~ 392 (475)
+++|+ ++.+|+ +++ .|+.|++||+.+++++..+.. ...+..++|+|++++
T Consensus 246 ~~~~s-d~~~l~-s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 246 SICCG-KDYLLL-SAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEEC-STTEEE-EEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEEEC-CCCEEE-EEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999 888555 544 899999999999998877742 246899999999999
Q ss_pred EEEEEec-CCCeEEEEEC--CCC---ceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCC
Q 011916 393 LVSTHGY-SQNQIMVWKY--PSM---AKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPS 454 (475)
Q Consensus 393 l~~~~g~-~dg~I~iwd~--~~~---~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~ 454 (475)
|++ +. .++.|++|++ .+. +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 322 l~~--~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 322 VAF--FVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEE--EETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEE--EECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 998 44 7999999999 555 677788888 88999999996543333332 556899988654
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-32 Score=269.96 Aligned_cols=241 Identities=15% Similarity=0.242 Sum_probs=212.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.|.+.|.+++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ +++|++++.||.|++||+....
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 478899999999999999999999999999999987 888999999999999994 7899999999999999997432
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEE-eccccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+..|...|.+++|+|++++|++++.|+.|++||++.+.. ...+ ..|...|.+++|+|++..+++ ++ .
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~ 162 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA-GS--C 162 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE-EE--T
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE-Ec--C
Confidence 12334577999999999999999999999999999999998763 2333 568899999999999985555 43 7
Q ss_pred CCeEEEEECC------------------CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 358 DRCIRFWNTS------------------NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 358 d~~I~iwd~~------------------~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
|+.|++||+. +++++..+ .+...+.+++|+|++++|++ ++.|+.|++||+.+++.+..+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCCEEEEEECCCCceeEEE
Confidence 9999999953 67777777 46778999999999999998 789999999999999999999
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..|...|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999988877 999999999987
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=285.21 Aligned_cols=244 Identities=14% Similarity=0.234 Sum_probs=203.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeEEecCCC------------CceEEEEeC--C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----------RVRTFGGHQ------------TRAGVLAWN--S 261 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~--~ 261 (475)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457899999999999999999999999999998876 577888998 889999995 3
Q ss_pred --CEEEEEeCCCcEEEEECCCCCcc--------------------------------------E-EEecCccCCEEEEEE
Q 011916 262 --RILSSGSRDRNILQHDLRVSSDY--------------------------------------I-CKLAGHKSEVCGLKW 300 (475)
Q Consensus 262 --~~l~sgs~dg~I~iwd~~~~~~~--------------------------------------~-~~~~~h~~~V~~l~~ 300 (475)
.+|++++.|+.|++||+...... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 58999999999999998732110 1 113679999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC-ceeEE-------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQ-QPTLR-------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ- 371 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~-------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~- 371 (475)
+|++++|++| .|+.|++||++.. +.+.. +..|...|.+++|+|++..++++++ .|+.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCCccc
Confidence 9999999998 7999999999943 33332 4579999999999999944667665 899999999999886
Q ss_pred ---eeeecCCC-------------CeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEecCCCcc----------
Q 011916 372 ---LNSVDTGS-------------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLR---------- 424 (475)
Q Consensus 372 ---~~~~~~~~-------------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~---------- 424 (475)
+..+.... .|.+++|+|++++|++ ++. +.|++||+.+ ++.+..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 56665432 8999999999999998 666 9999999997 8888888888642
Q ss_pred -----eEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 425 -----VLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 425 -----V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+..++|+|++++|++|+.||.|++||+..+..
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999987754
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=269.10 Aligned_cols=255 Identities=15% Similarity=0.281 Sum_probs=213.9
Q ss_pred CcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCeeeEEec-CCCCceEEEEeC-----CCEEEEE
Q 011916 198 SKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTN---LGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN-----SRILSSG 267 (475)
Q Consensus 198 ~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~---dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~-----~~~l~sg 267 (475)
.+.......+|...|.+++|+|++..+ ++|+. ||.|+|||+.+++...... +|...|.+++|+ +.+|++|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 344444434799999999999999655 55655 8999999999887765443 799999999994 4899999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCc-eeEEEecccc----c
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW------SHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTA----A 336 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~----~ 336 (475)
+.||.|++||+......+..+.+|...|.++.| ++++++|++++.|+.|++||+++++ ++..+..|.+ .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999998555478889999999999955 6899999999999999999999887 6777776555 7
Q ss_pred eeEEE----ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcC---CCCeEEEEEecCCCeEEEEEC
Q 011916 337 VKAIA----WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSK---NVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 337 v~~l~----~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.+++ |+|++..+++ ++ .|+.|++||+++++......+...+.+++|+| ++..+++ ++.+|.|++||+
T Consensus 167 v~~~~~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~ 241 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCA-GY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEEECCCC-CCCEEEE-EE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTTEEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEE-Ec--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCCeEEEEeC
Confidence 88998 7888885555 43 79999999999999988888899999999999 8999998 789999999999
Q ss_pred CCCceEEEe-----cCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCCCC
Q 011916 410 PSMAKVSTL-----TGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 410 ~~~~~~~~l-----~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+++.+..+ .+|...|.+++|+|++. +|++++.||.|++||+......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 876654444 38999999999999998 8999999999999999876544
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-32 Score=296.12 Aligned_cols=251 Identities=19% Similarity=0.329 Sum_probs=227.1
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECC
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~ 279 (475)
+.+. +|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.
T Consensus 7 ~~~~-~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 7 KTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred eeee-cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 3443 788999999999999999999999999999999999999999999999999994 6899999999999999998
Q ss_pred CCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECC-CCCcEEEEecCCC
Q 011916 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTA 357 (475)
Q Consensus 280 ~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~ 357 (475)
.+..+..+.+|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++. ++++++ .
T Consensus 86 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~--~ 161 (814)
T 3mkq_A 86 -TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGC--L 161 (814)
T ss_dssp -TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEE--T
T ss_pred -CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEe--C
Confidence 56778888999999999999999999999999999999999987 66778888999999999999 555 555554 8
Q ss_pred CCeEEEEECCCCceeeeecC--CCCeeEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 358 DRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSK--NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
|+.|++||+.++.....+.. ...+..++|+| ++..+++ ++.+|.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99999999998887776643 37899999999 8999998 889999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+.+|++++.||.|++||+..+.....
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 99999999999999999988765444
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=262.54 Aligned_cols=282 Identities=14% Similarity=0.176 Sum_probs=225.8
Q ss_pred CCCceeEEecCCC----C-EEEEEcCCeEEEEECCC-CcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ----N-VLAVGLGTCVYLWTASN-SKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~----~-~la~~~~~~V~lw~~~~-~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+.-.|++++|+++ + +++++.|+.|+||++.+ +... ..+. +|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 3556999999996 3 55556699999999997 5544 3333 789999999999999999999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEe--C--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 240 QCKRVRTFGGHQTRAGVLAW--N--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~--~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+++.+. +..|...|.+++| + +.+|++++.||.|++||++ ....+..+..+. .+.++.+.+ ..+++++.++.
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 191 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVLQLPE-RCYCADVIY--PMAVVATAERG 191 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGC
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEEecCC-CceEEEecC--CeeEEEeCCCc
Confidence 988776 5579999999999 4 4689999999999999998 456666666654 566777654 48889999999
Q ss_pred EEEEECCCCceeEEEe--ccccceeEEEECCCCCc---EEEEecCCCCCeEEEEECCCC---ceeeeecCCC--------
Q 011916 316 LLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWNTSNG---HQLNSVDTGS-------- 379 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~---ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~~~~-------- 379 (475)
+.+|+++......... .+...+..+++.++... .+++++ .|+.|++||+... ..+..+....
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 9999998765443322 23344555555544432 244444 8999999999887 3444443322
Q ss_pred -----CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 380 -----QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 380 -----~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+|...|.+++|+|+|++|++++.|+..+.|++...
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred cccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 6999999999999998 889999999999999999999999999999999999999999999998888887765
Q ss_pred CCCC
Q 011916 455 LKAP 458 (475)
Q Consensus 455 ~~~~ 458 (475)
+...
T Consensus 348 ~~~~ 351 (368)
T 3mmy_A 348 QKKN 351 (368)
T ss_dssp TSCC
T ss_pred Cccc
Confidence 5443
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=262.50 Aligned_cols=246 Identities=15% Similarity=0.283 Sum_probs=218.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+. .+..
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~ 108 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQC 108 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcE
Confidence 899999999999999999999999999999999999999999999999999995 6899999999999999998 4555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEecccc--ceeEEEECCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQ-----------PTLRLTEHTA--AVKAIAWSPHQ 346 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~-----------~~~~~~~h~~--~v~~l~~sp~~ 346 (475)
+..+. |...|.+++|+|++++|++++.+ +.|++||+.... .+..+..|.. .+.+++|+|++
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence 66665 88899999999999999999999 999999987653 3445556666 89999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc
Q 011916 347 SSLLASGGGTADRCIRFWNTSN-GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 424 (475)
..+++ ++ .|+.|++||+.+ ++.+..+. +...|.+++|+|++++|++ ++.|+.|++||+.+++.+..+. +...
T Consensus 188 ~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 188 KYIIA-GH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT--SSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp CEEEE-EE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred CEEEE-Ec--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE--ecCCceEEEEECCCCceeeeec-CCCC
Confidence 96655 33 799999999998 67777665 6788999999999999998 7899999999999999988887 7788
Q ss_pred eEEEEECCCCCEEEEEeCCC--------------CEEEEecCCCCCCCCc
Q 011916 425 VLYLATSPDGQTIVTGAGDE--------------TLRFWNVFPSLKAPAL 460 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg--------------~I~iW~~~~~~~~~~~ 460 (475)
+..++|+|+++++++++.++ .|++||+..+.....+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 99999999999999999998 8999999887765544
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-32 Score=258.97 Aligned_cols=247 Identities=21% Similarity=0.308 Sum_probs=215.6
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQH 276 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iw 276 (475)
+....+. +|.+.|.+++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+ +.+|++|+.||.|++|
T Consensus 9 ~~~~~l~-~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLK-GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEEC-CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhh-CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3444444 89999999999 999999999999999999999999999999999999999994 6899999999999999
Q ss_pred ECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEe
Q 011916 277 DLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASG 353 (475)
Q Consensus 277 d~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg 353 (475)
++.... .....+.+|...|.++.| ++++|++++.|+.|++|| .++.+..+..|...+.+++|.| ++. +++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN-KFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT-EEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC-EEEEE
Confidence 997443 456778899999999999 677999999999999999 6777888889999999999998 666 55555
Q ss_pred cCCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
+ .|+.|++||. ++.+..+. +...+.+++|+|++. +++ +..+|.|++||+.+++.+..+.+|...|.+++|+
T Consensus 162 ~--~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 162 S--ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp E--TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred E--CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 4 8999999994 44555443 778899999999998 666 7899999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 432 PDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 432 pdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
|++ .|++++.||.|++||+..+.....+
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 999 5889999999999999988765554
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=281.51 Aligned_cols=262 Identities=12% Similarity=0.199 Sum_probs=213.7
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Ce---eeEEecCCCCceEEEEeC--CC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ---CK---RVRTFGGHQTRAGVLAWN--SR 262 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~---~~---~~~~~~~h~~~v~~l~~~--~~ 262 (475)
.|+ .+++.+..+..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|.+++|+ ++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 377 445666666447899999999999 999999999999999999876 33 23333 599999999995 58
Q ss_pred EEEEEeCCCcEEEEECC--CCCccEEEec----------C--ccCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 263 ILSSGSRDRNILQHDLR--VSSDYICKLA----------G--HKSEVCGLK--WSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~--~~~~~~~~~~----------~--h~~~V~~l~--~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|++|+.||.|++||+. ..+....... . +...+.++. +++++.+|++|+.|+.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999999999999995 1222222222 1 455677776 567899999999999999999999999
Q ss_pred eEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcC----CCCeEEEEEe
Q 011916 327 TLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSK----NVNELVSTHG 398 (475)
Q Consensus 327 ~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~----~~~~l~~~~g 398 (475)
+..+.. |...|.+++|+|++..|++ |+ .|+.|++||+++++++..+ .+...|.+++|+| ++.+|++ |
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s--~ 279 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLIL-GT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG--G 279 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEE-EE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE--E
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEE-Ec--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE--E
Confidence 999988 8999999999999885554 43 8999999999999998877 4566899996665 5667777 8
Q ss_pred cCCCeEEEEECCCCceEEEecC--------------------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTG--------------------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~--------------------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.||.|++||+.+++.+..+.+ |...|++++|+ ++.+|++|+.|+.|++||+.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 8999999999999998877764 45568889999 77899999999999999999
Q ss_pred CCCCCCCcc
Q 011916 453 PSLKAPALV 461 (475)
Q Consensus 453 ~~~~~~~~~ 461 (475)
.+.....+.
T Consensus 359 ~~~~~~~~~ 367 (437)
T 3gre_A 359 ELSSSKAVI 367 (437)
T ss_dssp CGGGCEEEE
T ss_pred CcccceEEe
Confidence 887665543
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=289.54 Aligned_cols=226 Identities=11% Similarity=0.113 Sum_probs=187.1
Q ss_pred EEEEeCCCeEEEEECCCCeee----EEecCCCCceEEEEeCC--------CEEEEEeCCCcEEEEECCCCCc--------
Q 011916 224 ISVGTNLGQVQVWDGTQCKRV----RTFGGHQTRAGVLAWNS--------RILSSGSRDRNILQHDLRVSSD-------- 283 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~----~~~~~h~~~v~~l~~~~--------~~l~sgs~dg~I~iwd~~~~~~-------- 283 (475)
|++++.||+|+|||+.+++.. ..+.+|.+.|.+++|++ .+|++++.||+|++||+.....
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 344557889999999876542 34667889999999964 5999999999999999974321
Q ss_pred --cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEE--EECCCCCcEEEEecCCCC
Q 011916 284 --YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAI--AWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 284 --~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l--~~sp~~~~ll~sg~Gs~d 358 (475)
....+.+|...|.+++|++++ .|++|+.||+|++||++++ .+...+..|...|.+| +|+|++..++++++ .|
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S--~D 332 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA--VD 332 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE--TT
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec--cC
Confidence 234678899999999999864 8999999999999999976 4556788999999999 57888745777766 89
Q ss_pred CeEEEEECCCCceeeeec-CC--CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 359 RCIRFWNTSNGHQLNSVD-TG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~--~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
++|++||+++++++..+. +. ..|.+++|+|+++.+++ ++.|+.|++||++++..+..+.+|.+.|++|+|+|+|+
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence 999999999887765553 22 35889999999999888 77899999999999998888999999999999999999
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
+|++|+.||+|++||+...
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARR 429 (524)
T ss_dssp BCEEEETTTEEECCBSCSS
T ss_pred eEEEEECCCEEEEEechHh
Confidence 9999999999999998654
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-32 Score=269.77 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=213.4
Q ss_pred EeeCCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeeeEEecC-----CCCceEEEEeC------CCEEEEE
Q 011916 203 LCDLGPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKRVRTFGG-----HQTRAGVLAWN------SRILSSG 267 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----h~~~v~~l~~~------~~~l~sg 267 (475)
.+..+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|.+++|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 333489999999999984 45677777778999999998877766653 56789999994 3489999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEEC
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWS 343 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~s 343 (475)
+.||.|++||+. ....+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTT-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEch-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999998 5677888889999999999999 9999999999999999999999988888 6799999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeeEEEEcCCCCeEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----------------------------TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~ 394 (475)
|++..+++.+ .|+.|++||+++++.+..+. +...|.+++|+ +++++
T Consensus 171 ~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 171 LLGEKIMSCG---MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp TTSSEEEEEE---TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred CCCCEEEEec---CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 9998665543 79999999999876554432 77889999999 67887
Q ss_pred EEEecCCCeEEEEECCCCce--------------EEEecCCCcceEEEEECCC--CCEEEEEeCCCCEEEEecCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAK--------------VSTLTGHSLRVLYLATSPD--GQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~--------------~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+ ++.|+.|++||+.++.. +..+.+|...|.+++|+|+ +++|++++.||.|++||+..+...
T Consensus 246 ~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 246 S--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp E--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred E--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 7 88899999999987644 7888899999999999999 999999999999999999987644
No 93
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-32 Score=298.53 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=166.7
Q ss_pred CCceeEEecCCC-CEE-EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVL-AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~l-a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.|.+++|+|+ .++ +++.|+.|+||+..+.+..... .|...|.+++|+| |++|++++.|++|+|||+.+++.+.
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence 345899999997 444 4556999999999887765443 6788999999999 8899999999999999999999988
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE-----------EEecCccCCEEEEEEcCC-CCEEEEEe
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI-----------CKLAGHKSEVCGLKWSHD-DRELASGG 311 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-----------~~~~~h~~~V~~l~~s~~-~~~lasg~ 311 (475)
.+. |...|.+++|+ +++|++|+.||.|++||++.. ... ..+.+|.+.|.+++|+|+ +..|++|+
T Consensus 94 ~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 94 TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 886 67899999995 689999999999999999843 322 123678999999999995 57999999
Q ss_pred CCCcEEEEECCCCceeEEEecc------------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEH------------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
.|+.| +||+++++.+..+..| ...|.+++|+|++.+| ++++ .|+.|++||+++++++.
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-asgs--~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI-ITIH--EDNSLVFWDANSGHMIM 247 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE-EEEE--TTCCEEEEETTTCCEEE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE-EEEE--CCCeEEEEECCCCcEEE
Confidence 99999 9999999988888765 4779999999999855 4544 89999999999998765
Q ss_pred e
Q 011916 374 S 374 (475)
Q Consensus 374 ~ 374 (475)
.
T Consensus 248 ~ 248 (902)
T 2oaj_A 248 A 248 (902)
T ss_dssp E
T ss_pred E
Confidence 3
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-32 Score=266.84 Aligned_cols=252 Identities=14% Similarity=0.158 Sum_probs=215.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEEC-C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---RVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDL-R 279 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~-~ 279 (475)
+|.+.|.+++|+|++++|++|+.||.|+||++.+++ ....+.+|...|.+++| ++. +|++|+.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 788999999999999999999999999999998776 34556689999999999 478 9999999999999999 6
Q ss_pred CCCccEEEecC--ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEEeccccceeEEEECCCCCc
Q 011916 280 VSSDYICKLAG--HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---------QQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 280 ~~~~~~~~~~~--h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
. . ....+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 89 ~-~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 89 S-P-SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp S-S-SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred C-C-ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 3 3 3477788 999999999999 99999999999999999987 66666655 88999999999987
Q ss_pred EEEEecCCCCCeEEEEECCC-Ccee---eeecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCC------ceEEE
Q 011916 349 LLASGGGTADRCIRFWNTSN-GHQL---NSVDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSM------AKVST 417 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~-~~~~---~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~------~~~~~ 417 (475)
++ +++ .|+.|++||+++ +... ....+...+.+++|+| +++.+++ ++.+|.|++|++... +....
T Consensus 163 l~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 LI-VGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EE-EEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred EE-EEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCccccccccee
Confidence 44 443 799999999998 5532 3335678899999999 9999998 788999999999887 77888
Q ss_pred ecCCCc---------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc--CCccccc
Q 011916 418 LTGHSL---------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK--DTSLWSL 469 (475)
Q Consensus 418 l~~h~~---------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~--~~~v~s~ 469 (475)
+..|.. .|.+++|+|++++|++++.||.|++||+..+.....+.. ...++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence 888865 999999999999999999999999999998776555432 3445443
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.9e-32 Score=264.75 Aligned_cols=239 Identities=19% Similarity=0.362 Sum_probs=196.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEE--EEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVT--RLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~--~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~ 240 (475)
+.-.|.+++|+++ .+++++.|+.|+|||+.++... ..+. +|.+.|.+++|++ ++++|++|+.||+|+|||+.+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3456889999985 4666777999999999887543 3333 8999999999986 489999999999999999988
Q ss_pred C--eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCC---------
Q 011916 241 C--KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHD--------- 303 (475)
Q Consensus 241 ~--~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~--------- 303 (475)
+ +.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++..... ...+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 7 4667788999999999995 468999999999999999854322 3456789999999999997
Q ss_pred --------CCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCC
Q 011916 304 --------DRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 304 --------~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+++|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++ ..++++++ .|++|++||+.+.
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDA 248 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSST
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCc
Confidence 478999999999999999755 4566788899999999999987 24667765 8999999998763
Q ss_pred c----eeee-ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 370 H----QLNS-VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 370 ~----~~~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
. .... ..+...|.+++|+|+++.|++ ++.|+.|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1 1112 246788999999999999998 7899999999975
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-30 Score=251.81 Aligned_cols=259 Identities=20% Similarity=0.320 Sum_probs=213.7
Q ss_pred eEEEEECCCCcEE--EEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-----eeeEEecCCCCceEEEEeC
Q 011916 189 CVYLWTASNSKVT--RLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQC-----KRVRTFGGHQTRAGVLAWN 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~--~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~l~~~ 260 (475)
.++++...+.+.. ..+. +|.+.|++|+|+|+ +++||+|+.||+|+|||+.+. .+...+.+|...|.+++|+
T Consensus 17 ~~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred cEEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence 3555555555433 3343 89999999999997 689999999999999998764 3567788999999999994
Q ss_pred --CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEeccccce
Q 011916 261 --SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT-LRLTEHTAAV 337 (475)
Q Consensus 261 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~-~~~~~h~~~v 337 (475)
+.+|++|+.|+.|++|+.. ..........+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred CCCCEEEEEcccccceEEeec-ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 6899999999999999998 56666777788889999999999999999999999999999866543 3445689999
Q ss_pred eEEEECCCCCc-EEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q 011916 338 KAIAWSPHQSS-LLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 338 ~~l~~sp~~~~-ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
..++|++++.. ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEE
T ss_pred cceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEeccCcee
Confidence 99999987643 556655 89999999999999888874 6788999999999999998 889999999999999999
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+..+ ..|..++|+|++.++ +++.|+.|++||+....
T Consensus 251 ~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 251 YTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred eeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 888755 579999999998655 56679999999998654
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.5e-31 Score=282.48 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=211.5
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQ-----CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|++|+|++++ ++|++|+.||+|+||++.+ +.....+.+|...|.+++|+ +++|++|+.||+|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 899999999999864 7999999999999999875 34567788999999999994 689999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEECCCCC-cEEEEec
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQS-SLLASGG 354 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~-~ll~sg~ 354 (475)
. .+.....+.+|...|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++. .++++++
T Consensus 460 ~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 A-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp T-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred C-CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 8 56778889999999999999999999999999999999998765433222 35888999999999873 3666665
Q ss_pred CCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 355 GTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
.|+.|++||++++++...+. |...|.+++|+|++++|++ |+.||.|++||+.+++.+..+.. ...|.+++|+|+
T Consensus 539 --~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--g~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~ 613 (694)
T 3dm0_A 539 --WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS--GGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN 613 (694)
T ss_dssp --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred --CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence 89999999999999888775 6788999999999999998 88999999999999998888764 467999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+.+|++++ |+.|+|||+..+..
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcEEEEEc-CCCEEEEECCCCCC
Confidence 99888765 55699999987654
No 98
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.2e-30 Score=256.82 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=225.8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
+++++.++.|++||+.+++....+. +...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 3444558999999999999888775 33568999999999987 566689999999999999999887665 8999999
Q ss_pred C--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEecccc
Q 011916 260 N--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 260 ~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+ +++| ++++.++.|.+||+. .++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred CCCCCEEEEEECCCCEEEEEECC-CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 5 5666 455677999999998 4555555554 4568999999999977 67888999999999999888877765 4
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCce
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAK 414 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~ 414 (475)
.+.+++|+|+++.++++++ .++.|++||+.+++.+..+.+...+.+++|+|+++.++++... .++.|++||+.+++.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 5699999999998877765 7999999999999999988888889999999999999984211 689999999999999
Q ss_pred EEEecCCCcceEEEEECCCCCEE-EEEeCCCCEEEEecCCCCCCCC
Q 011916 415 VSTLTGHSLRVLYLATSPDGQTI-VTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 415 ~~~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..+.....
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 98888765 47899999999987 5678899999999987765443
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4e-30 Score=259.75 Aligned_cols=277 Identities=13% Similarity=0.072 Sum_probs=234.7
Q ss_pred eeEEecCCCC-EEEEEc-CCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 171 LNLVDWSSQN-VLAVGL-GTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~-~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.+++|+++. +++++. ++.|++||..+++....... +|...|.+++|+++++++++++.||.|++||+.+++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4578898864 444444 67899999999998875432 67789999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--------CC
Q 011916 245 RTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--------ND 313 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--------~D 313 (475)
..+..|...+.+++|+ +..+ ++++.|+.|.+||++ .+..+..+.. ...+.+++|+|++++|++++ .|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 9999999999999995 5666 555689999999998 4555555554 45599999999999999988 58
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeE
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l 393 (475)
+.|++||+.+++.+..+ .|...+.+++|+|+++.++++++ .|+.|++||+.+++.+..+.+...+.+++|+|+++.+
T Consensus 283 g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 89999999998876655 46678999999999998888865 8999999999999999999888899999999999998
Q ss_pred EEEEecC-------------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCC
Q 011916 394 VSTHGYS-------------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 394 ~~~~g~~-------------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~ 453 (475)
+++.... ||.|++||..+++.+..+.. ...+.+++|+|||++|++++. |+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8853221 57999999999999888876 457899999999999998875 99999999864
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.1e-32 Score=273.80 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=203.8
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee--EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRV--RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|...|++|+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|...|.+|+|+ +++|++|+.||+|++||++.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 5678899999999 5679999999999999999876544 4456899999999995 57999999999999999973
Q ss_pred CCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 281 SSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 281 ~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
........ .+...+++++|++++++|++|+.||.|++||++. +.+..+..|...|.+++|+|++..++++++ .|
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s--~d 272 (435)
T 4e54_B 197 -NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS--VD 272 (435)
T ss_dssp -CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE--TT
T ss_pred -CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec--Cc
Confidence 33222222 2345678999999999999999999999999975 456778899999999999999998888876 89
Q ss_pred CeEEEEECCCCceeeee----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc------eEEE
Q 011916 359 RCIRFWNTSNGHQLNSV----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR------VLYL 428 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~------V~~l 428 (475)
+.|++||+++++....+ .|...|.+++|+|++++|++ ++.||.|+|||+.++.....+..|... +..+
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s--~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT--TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE--EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE--EcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999887654433 46788999999999999998 889999999999999888888776532 3456
Q ss_pred EECCCCCEEEEEe------------CCCCEEEEecCCCCCCCC
Q 011916 429 ATSPDGQTIVTGA------------GDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 429 ~~spdg~~l~s~s------------~Dg~I~iW~~~~~~~~~~ 459 (475)
.|+|++.+++++. .++.|++||+.++.....
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 7888877777664 235799999988776544
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.2e-30 Score=255.74 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=217.9
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.|.+++|+++ .+++++.++.++||+..+++....... ..+..+++.++++.+ ++|+.|++|+|||+.+++.+.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~ 95 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS 95 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE
Confidence 345888999997 788888888899999988776555432 247788899988887 467778999999999999999
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE--EeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS--GGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las--g~~Dg~I~iwd~~~ 323 (475)
.+. +...|.+++++++.++++. |+.|++||+....+.+..+.. ....+++++ .++++ |+.||.|++||+.+
T Consensus 96 ~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 96 RIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp EEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC
T ss_pred EEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC
Confidence 887 6679999999988777765 789999999854233333333 344455666 56766 58899999999997
Q ss_pred Cc---------------e-eEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeec---CCCCeeE
Q 011916 324 QQ---------------P-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVD---TGSQVCN 383 (475)
Q Consensus 324 ~~---------------~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~---~~~~v~~ 383 (475)
+. + +..+.+|...|.+++|+|++.+ +++++ .|++ |++||+.+++++..+. +...|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~ 245 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSE-EEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEE
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEE
Confidence 65 2 6788999999999999999985 55544 8998 9999999999999987 7889999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEec---------------------CCCcceEEEEECCCCCEEEEE
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLT---------------------GHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~---------------------~h~~~V~~l~~spdg~~l~s~ 440 (475)
++|+|++++|++ ++.|+.|++||+..... ...+. .+......++|++||++|+++
T Consensus 246 ~~~s~~~~~l~s--~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 246 MKWSTDGSKLAV--VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp EEECTTSCEEEE--EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred EEECCCCCEEEE--EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 999999999999 88999999999975431 11111 112234678999999999999
Q ss_pred eCCCCEEEEecCCCCCCC
Q 011916 441 AGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~ 458 (475)
+.||.+++|++..+....
T Consensus 324 ~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 324 PHTRMIETFKVVFDDEME 341 (355)
T ss_dssp TTTTEEEEEEEEEETTTT
T ss_pred eCCCeEEEEEEEcCCCCc
Confidence 999999999998765443
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=287.82 Aligned_cols=244 Identities=17% Similarity=0.302 Sum_probs=210.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +++|++|+.||.|++||+..
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999999999999999999999999987 567788899999999999994 78999999999999999984
Q ss_pred CC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--ceeEEEeccccceeEEEECCC----------
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPH---------- 345 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~---------- 345 (475)
.. ..+..+.+|...|.+++|+|+ +++|++|+.||.|++||++.+ .....+..|...|.+++|+|.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 32 266778889999999999999 999999999999999999877 345567789999999999994
Q ss_pred ---CCcEEEEecCCCCCeEEEEECCCCc----eeeee-cCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEECCCCc-
Q 011916 346 ---QSSLLASGGGTADRCIRFWNTSNGH----QLNSV-DTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKYPSMA- 413 (475)
Q Consensus 346 ---~~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~-~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~- 413 (475)
+..+++ |+ .||.|++||++++. ....+ .+...|.+++|+|+ ++.+++ |+.||.|++||+.+++
T Consensus 167 ~~d~~~l~s-gs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 167 TKESRKFVT-GG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp CGGGCCEEE-EE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEESSSSS
T ss_pred CCCCCEEEE-EE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecCCCCCC
Confidence 664544 44 79999999998874 33333 36788999999999 788888 8899999999998864
Q ss_pred ----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 414 ----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 414 ----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.....|...|++++|+|+|.+|++++.||.|++|++....
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 333445688999999999999999999999999999998644
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-30 Score=255.20 Aligned_cols=239 Identities=19% Similarity=0.367 Sum_probs=200.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~~ 241 (475)
.-.|.+++|+++ . +++++.|+.|+||++... +....+. +|...|++++|+++ +++|++|+.||.|++||+.++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 456889999986 4 555556999999999844 4444443 78999999999987 999999999999999999998
Q ss_pred e--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcC------------
Q 011916 242 K--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSH------------ 302 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~------------ 302 (475)
+ .+..+..|...|.+++|+ +.+|++++.|+.|++||++... .....+..|...|.+++|+|
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCC
Confidence 7 777888999999999995 6799999999999999998543 34556778999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce---
Q 011916 303 -DDRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ--- 371 (475)
Q Consensus 303 -~~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~--- 371 (475)
++.+|++|+.|+.|++||++.+. .+..+..|...|.+++|+|+ +. ++++++ .|+.|++||+.++..
T Consensus 170 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVS--QDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEE--TTSCEEEEEESSTTSCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEe--CCCEEEEEeCCCCCccce
Confidence 69999999999999999998764 34567789999999999999 55 555554 899999999998742
Q ss_pred eeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 372 LNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 372 ~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.... .+...|.+++|+|++++|++ ++.||.|++|++...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEET
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCC
Confidence 2222 36678999999999999998 778999999998743
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=7.4e-30 Score=258.76 Aligned_cols=233 Identities=24% Similarity=0.450 Sum_probs=209.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||+. .+..+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~-~~~~~~ 207 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN-TGEMLN 207 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS-SCCEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC-CCcEEE
Confidence 56678988877 799999999999999999999999999999999999999999999999999999999998 567788
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.+.+|...|.+++|+ +..|++|+.||.|++||+.++... ..+.+|...|.+++| ++. ++++++ .|+.|++
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~--~dg~i~v 280 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSAS--GDRTIKV 280 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEE--TTSEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEe--CCCeEEE
Confidence 899999999999996 459999999999999999987765 667789999999999 555 455544 7999999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
||+.+++++..+. +...+.++.|+ ++.+++ |+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence 9999999998885 66789999984 678887 889999999999999999999999999999999 8899999999
Q ss_pred CCCEEEEecCCCC
Q 011916 443 DETLRFWNVFPSL 455 (475)
Q Consensus 443 Dg~I~iW~~~~~~ 455 (475)
||.|++||+..+.
T Consensus 355 dg~i~vwd~~~~~ 367 (435)
T 1p22_A 355 DGKIKVWDLVAAL 367 (435)
T ss_dssp TSCEEEEEHHHHT
T ss_pred CCcEEEEECCCCC
Confidence 9999999997654
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=6.5e-30 Score=248.33 Aligned_cols=246 Identities=16% Similarity=0.282 Sum_probs=202.5
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~ 239 (475)
.-.|.+++|+++ . +++++.|+.|++|++.++. ....+. +|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 446899999986 3 6666679999999998763 334343 7899999999999 69999999999999999998
Q ss_pred CC---------eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEE------------EecCccCC
Q 011916 240 QC---------KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYIC------------KLAGHKSE 294 (475)
Q Consensus 240 ~~---------~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~h~~~ 294 (475)
++ +.+..+.+|...|.+++|+ +.+|++++.||.|++||++....... ....|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 87 6688888999999999995 67999999999999999984432110 01267889
Q ss_pred EEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEEeccccceeEEEECCCCC---cEEEEecCCCCCeEEEEEC
Q 011916 295 VCGLKWSHD---DRELASGGNDNQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQS---SLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 295 V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~---~ll~sg~Gs~d~~I~iwd~ 366 (475)
+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...|.+++|+|++. .++++++ .|+.|++||+
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~ 247 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKI 247 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeC
Confidence 999999997 99999999999998888887765 667778999999999999983 4666665 8999999999
Q ss_pred CCC----------------------------------------------ceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 367 SNG----------------------------------------------HQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 367 ~~~----------------------------------------------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.++ +.+..+. +...|.+++|+|++++|++ ++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~~ 325 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS--AG 325 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--EE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--ec
Confidence 875 3344443 6678999999999999999 88
Q ss_pred CCCeEEEEECCCCceEEEe
Q 011916 400 SQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l 418 (475)
.||.|++||+.+++.+..+
T Consensus 326 ~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 326 DDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp TTSCEEEEEECTTSCEEEE
T ss_pred CCCcEEEEecCcCcchhhe
Confidence 9999999999987654443
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.7e-29 Score=253.40 Aligned_cols=245 Identities=22% Similarity=0.362 Sum_probs=206.9
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~ 243 (475)
+...+.+++|+++ . +++++.++.|++||+.+++....+. +|...|.+++| ++++|++|+.||.|++||+. ....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 4567999999986 3 5555669999999999999888776 88999999999 56799999999999999998 5677
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEe--CCCcEEE
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGG--NDNQLLV 318 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~--~Dg~I~i 318 (475)
+..+.+|...|.+++|+ +.+|++|+.|+.|++||++ ....+..+..|...|.+++|+|++ .++++|+ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 88899999999999994 6899999999999999998 567777888999999999999966 4666665 7999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~ 395 (475)
||+.+++.+..+. +...|.+++|+|++..+++++ |..|+.|++||+.+++..... .+...|.+++|+|++++|++
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH-GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe-ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 9999999888875 677899999999999777764 458999999999987665543 46788999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEec
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++.||.|++|++.+++.+....
T Consensus 367 --~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 367 --AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp --ECTTSEEEEEECCC--------
T ss_pred --EeCCCcEEEEECCCCccccccc
Confidence 8899999999999988766543
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.5e-30 Score=256.49 Aligned_cols=277 Identities=12% Similarity=0.149 Sum_probs=199.9
Q ss_pred eeEEecC---C--CCEEEEEcCCeEEEEECCCC--------cEEEEeeCCCCCcEEEEEEc-------------------
Q 011916 171 LNLVDWS---S--QNVLAVGLGTCVYLWTASNS--------KVTRLCDLGPGDSVCSVQWT------------------- 218 (475)
Q Consensus 171 v~~l~ws---~--~~~la~~~~~~V~lw~~~~~--------~~~~~~~~~~~~~V~~v~~s------------------- 218 (475)
...+.|. + .++++++.++.|.+|+.... ....+....+...+..+.|+
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSS 97 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------C
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeec
Confidence 3445663 2 36999999999999976321 11122222344455555554
Q ss_pred -CCCCEEEEEeCCCeEEEEECCCCeeeE-----EecCCCCceEEEEeC----------CCEEEEEeCCCcEEEEECCCCC
Q 011916 219 -REGSYISVGTNLGQVQVWDGTQCKRVR-----TFGGHQTRAGVLAWN----------SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 219 -pdg~~la~g~~dg~v~iwd~~~~~~~~-----~~~~h~~~v~~l~~~----------~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+++.+||+|+.|++|+|||+.+++... .+.+|...|.+++|+ +++|++|+.|++|+|||++ ..
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~-~~ 176 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT-DE 176 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE-TT
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC-CC
Confidence 345689999999999999998876543 467999999999994 5799999999999999998 45
Q ss_pred ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEE-------------------------Eeccccc
Q 011916 283 DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLR-------------------------LTEHTAA 336 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~-------------------------~~~h~~~ 336 (475)
..+..+..|...|.+++|+|++ .+|++|+.|++|++||+++++.... ..+|...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 5666777889999999999987 4899999999999999987654322 2357778
Q ss_pred eeEEEEC-CCCCcEEEEecCCCCCeEEEEECCCCceeeeec-------------------CCCCeeEEEEcCCCCeEEEE
Q 011916 337 VKAIAWS-PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------------------TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 337 v~~l~~s-p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------------------~~~~v~~l~~s~~~~~l~~~ 396 (475)
+.++.|+ |++..+++ ++ .|+.+++||+.+++....+. .........|++....++++
T Consensus 257 v~~v~~~~~dg~~l~s-~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 257 LANVRWIGSDGSGILA-MC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp CSEEEEETTTTCEEEE-EC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred ceeeeeecCCCCEEEE-Ee--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 8999986 78875554 43 89999999998776544432 11222334455543333333
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+|+.||.|++||+.+++.+..+.+|...|.+++|+|||++||+++.|| +.+|.+.
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 388999999999999999888888999999999999999999998776 6666654
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=249.78 Aligned_cols=266 Identities=17% Similarity=0.218 Sum_probs=213.3
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ceee-EEecCCCCceEEEEeC--CCEEE
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQVQVWDGTQ-CKRV-RTFGGHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~v~iwd~~~-~~~~-~~~~~h~~~v~~l~~~--~~~l~ 265 (475)
|+....+....+. +|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+ +++|+
T Consensus 24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3444445555544 88999999999998 69999999999999999987 5554 7788999999999995 68999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW--SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+++.||.|++||++ .... ..+..|...|.+++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 103 s~~~dg~v~iwd~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~ 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLS-SNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI 179 (368)
T ss_dssp EEETTSEEEEEETT-TTEE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE
T ss_pred EEcCCCcEEEEEcC-CCCc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec
Confidence 99999999999998 3443 346679999999999 8999999999999999999999999988887664 56677776
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCe----EEEEEecCCCeEEEEECCCC---c
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNE----LVSTHGYSQNQIMVWKYPSM---A 413 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~----l~~~~g~~dg~I~iwd~~~~---~ 413 (475)
++ .+++.+ .++.+.+|++......... .....+.++.+.++... +++ ++.+|.|++||+... .
T Consensus 180 ~~--~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 180 YP--MAVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp TT--EEEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHH
T ss_pred CC--eeEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCccc
Confidence 54 344433 6999999999876554433 23455667777666554 666 889999999999887 6
Q ss_pred eEEEecCCCc------------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCccccc
Q 011916 414 KVSTLTGHSL------------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSL 469 (475)
Q Consensus 414 ~~~~l~~h~~------------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~ 469 (475)
.+..+.+|.. .|.+++|+|++++|++++.||.|++||+..+.....+. +...+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence 6778888876 79999999999999999999999999999876655443 34444433
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.7e-30 Score=257.27 Aligned_cols=239 Identities=20% Similarity=0.337 Sum_probs=201.7
Q ss_pred EEEEEcCCCCEE-EEEeCCCeEEEEECCCCe----eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--
Q 011916 213 CSVQWTREGSYI-SVGTNLGQVQVWDGTQCK----RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 213 ~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
..++++|+...+ ++++.||.|+||++.... .+..+.+|...|.+++|+ +++|++|+.||.|++||+....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 357788876544 457889999999986642 345677999999999994 5899999999999999998543
Q ss_pred ----ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE--eccccceeEEEECCCCCcEEEEecC
Q 011916 283 ----DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 283 ----~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++..|++++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 195 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC-- 195 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--
Confidence 5677889999999999999998 69999999999999999999999998 78999999999999999666644
Q ss_pred CCCCeEEEEECCCCceeeee-c-CCC-CeeEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCce-EEEec-CCCcceEE
Q 011916 356 TADRCIRFWNTSNGHQLNSV-D-TGS-QVCNLAWSKNVNELVSTHG---YSQNQIMVWKYPSMAK-VSTLT-GHSLRVLY 427 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~-~-~~~-~v~~l~~s~~~~~l~~~~g---~~dg~I~iwd~~~~~~-~~~l~-~h~~~V~~ 427 (475)
.|+.|++||+++++.+..+ . +.+ .+..+.|+|++.+|++ | ..++.|++||+.+++. +.... .|...|.+
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 196 -RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT--GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp -TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE--EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred -cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE--eccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 7999999999999998887 3 333 3899999999998888 7 6899999999988654 33332 57788999
Q ss_pred EEECCCCCEEEE-EeCCCCEEEEecCCCCC
Q 011916 428 LATSPDGQTIVT-GAGDETLRFWNVFPSLK 456 (475)
Q Consensus 428 l~~spdg~~l~s-~s~Dg~I~iW~~~~~~~ 456 (475)
++|+|++++|++ ++.||.|++|++..+..
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 999999999975 55799999999998764
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=252.54 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=205.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeEEec-C
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT---------QCKRVRTFG-G 249 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~---------~~~~~~~~~-~ 249 (475)
.+++++.|+.|++||+.+++....+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+. +
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 57777889999999999998877765 356778888888 9999999999999665 455455554 7
Q ss_pred CCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEe-cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 250 HQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKL-AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 250 h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
|...|.+++|+ +++|++|+.||+|++||++. +...... ..|...|.+++|+|++.+|++|+.||.|++||++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 77899999995 47999999999999999984 4444444 445668999999999999999999999999999999
Q ss_pred cee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC----CCCe--eEEEEcCCCCeEEEE
Q 011916 325 QPT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT----GSQV--CNLAWSKNVNELVST 396 (475)
Q Consensus 325 ~~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~----~~~v--~~l~~s~~~~~l~~~ 396 (475)
+.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++|++
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~- 277 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC----DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA- 277 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE----SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE-
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe----CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE-
Confidence 887 78888 999999999999998655543 44999999999887655432 2233 36999999999998
Q ss_pred EecC-CCeEEEEECCCCceEEEecCCCcceEEEEECC---CCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP---DGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.. ++.|++|++......... ..+..++|.+ ++..|++++.||.+.++-..
T Consensus 278 -~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 278 -YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp -EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred -ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 555 999999999766544333 5677888988 88899999999999887543
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=257.99 Aligned_cols=276 Identities=15% Similarity=0.228 Sum_probs=220.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEec-------------CCCC
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFG-------------GHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~-------------~h~~ 252 (475)
++.+++|+...++...... +|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 3456777777777666665 7999999999999 99999999999999999999876655443 5999
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCce
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
.|.+++|+ +.+|++++.||.|++||++ .......+. +...+.++.|++ ++.++++++.|+.|++||+++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETT-TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 99999995 4699999999999999998 455555444 778899999998 445999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee----------------cCCCCeeEEEEcCC
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV----------------DTGSQVCNLAWSKN 389 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~----------------~~~~~v~~l~~s~~ 389 (475)
+..+..|...|.+++|+|++.+++++++ .|+.|++||++++. ++..+ .+...|.+++|+|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 9999999999999999999998777766 89999999998765 33322 35678999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCC-----cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-----LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KD 463 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~ 463 (475)
+++|++ ++.||.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+..+.....+. +.
T Consensus 257 ~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 257 GLHLLT--VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp SSEEEE--EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCEEEE--ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 999998 8899999999999887665444321 122222223345567777889999999999887665544 33
Q ss_pred Cccccc
Q 011916 464 TSLWSL 469 (475)
Q Consensus 464 ~~v~s~ 469 (475)
..+.++
T Consensus 335 ~~v~~~ 340 (408)
T 4a11_B 335 KTVDCC 340 (408)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 444433
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=263.53 Aligned_cols=253 Identities=9% Similarity=0.066 Sum_probs=203.1
Q ss_pred CceeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+.+++|+|| .++|. +.|++|+ |...++.+ . +|...|.+++|+|+| .++.+.+|+ ++....
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~ 79 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-CNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGL 79 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-SBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-CCCccEEEEEECCCC-------CcceEEEEe---CCCceE
Confidence 46788999998 45555 4588888 75555432 3 889999999999999 455555554 333333
Q ss_pred ec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-----CEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 247 FG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-----EVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 247 ~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
+. .|...|.+++| +|..|++++.||.|++||... .+..+. |.. .|.+++|||||++||+|+.||+|+|
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 33 56889999999 478999999999999999642 555566 665 5999999999999999999999999
Q ss_pred EECCCCce-------eEEE----eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee---eee--cCCCCee
Q 011916 319 WNQHSQQP-------TLRL----TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL---NSV--DTGSQVC 382 (475)
Q Consensus 319 wd~~~~~~-------~~~~----~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~---~~~--~~~~~v~ 382 (475)
||+..+.. +.++ .+|...|.+++|+|+| +++++ .|+.|++||+.++... ..+ .+...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99998753 5666 5677899999999999 55544 6999999999887743 344 3557899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++|+ ++.|++ ++ ++.|++||+.+++......+|...|..++| +||+..|+++++||+ ++|.++
T Consensus 231 svaFs--g~~LAS--a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVL--TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEE--EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEE--Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 678887 43 699999999988775555589999999999 999999999999999 999986
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.1e-28 Score=236.74 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=198.9
Q ss_pred cCCCCCCCCceeEEecCCC----CEEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 011916 161 DAPSLQDDFYLNLVDWSSQ----NVLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQ 232 (475)
Q Consensus 161 ~~p~~~~d~~v~~l~ws~~----~~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~ 232 (475)
..|.-.-...+.++-|-.. -.+.++....|.+|+..++ +....+. .|..+|..|.+.||.. ++.++-.+=.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 110 (356)
T 2w18_A 32 KNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLE 110 (356)
T ss_dssp CCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSS
T ss_pred cCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeecccc
Confidence 3443334455788888753 2677788999999999998 6666665 5666777777777543 2222222111
Q ss_pred E-EEEEC--CCC----eeeEEecCCCCceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-
Q 011916 233 V-QVWDG--TQC----KRVRTFGGHQTRAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH- 302 (475)
Q Consensus 233 v-~iwd~--~~~----~~~~~~~~h~~~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~- 302 (475)
+ .|+-+ ... .....-.+|...|..+ -+++++.+++ .|+.|++|++...++.+..+.+|...+..++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 1 11111 111 1111112344344333 1334444433 5999999999767888888889999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCceeEEEeccc---cceeEEEECCCCCcEE-----------EEecCCCCCeEEEEEC
Q 011916 303 --DDRELASGGNDNQLLVWNQHSQQPTLRLTEHT---AAVKAIAWSPHQSSLL-----------ASGGGTADRCIRFWNT 366 (475)
Q Consensus 303 --~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~ll-----------~sg~Gs~d~~I~iwd~ 366 (475)
++.+||+|+.|++|+|||+++++.+.++.+|. ..+.+++|+|++..++ ++ |+.|++|++||.
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS--Gs~D~tIklWd~ 267 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL--RSPVFQLIVINP 267 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEET
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec--cCCCcEEEEEEC
Confidence 77999999999999999999999999998654 4677889999998663 34 448999999999
Q ss_pred CCCceeeeec------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE-EEEECCCCCEEEE
Q 011916 367 SNGHQLNSVD------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL-YLATSPDGQTIVT 439 (475)
Q Consensus 367 ~~~~~~~~~~------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s 439 (475)
.+++.+..+. +...+.+..+ ++..+++ |+.|+.|+|||+.+++.+.++++|...+. .++|+|||++|++
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 9998876541 1222333333 3566666 88999999999999999999999988765 5899999999999
Q ss_pred EeCCCCEEEEec
Q 011916 440 GAGDETLRFWNV 451 (475)
Q Consensus 440 ~s~Dg~I~iW~~ 451 (475)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.9e-29 Score=247.71 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=185.6
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEE-EEEeCC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRIL-SSGSRD 270 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l-~sgs~d 270 (475)
||++.+.+.+.... .|...|.+++|+|||++||+|+.+| ++||++.+++.......+...+.++.++++.+ ++|+.|
T Consensus 3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccc-cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 45555555444333 6889999999999999999998875 78999998877766554433344444456666 667888
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcE
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
++|++||+. .+..+..+. |...|.+++|+++. ++++. |+.|++||+.++ +.+..+.. ....+++++ ..+
T Consensus 81 ~~v~iWd~~-~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 81 EVVHIWDDV-KKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TEEEEEETT-TTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred cEEEEEECC-CCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 999999998 556666665 66789999998764 44443 789999999988 66655544 344556666 434
Q ss_pred EEEecCCCCCeEEEEECCCCc----------------eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCC
Q 011916 350 LASGGGTADRCIRFWNTSNGH----------------QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPS 411 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~----------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~ 411 (475)
+++ +|..||.|++||+.++. ++..+ .|...|.+++|+|++++|++ |+.|+. |++||+.+
T Consensus 151 a~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 151 VYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTIIRVFKTED 227 (355)
T ss_dssp EEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSEEEEEETTT
T ss_pred EEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCEEEEEECCC
Confidence 444 23489999999999876 13444 57789999999999999999 889998 99999999
Q ss_pred CceEEEec-C-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 412 MAKVSTLT-G-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 412 ~~~~~~l~-~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
++.+..+. + |...|.+++|+|||++|++++.|++|++||+.....
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 99999998 5 999999999999999999999999999999987643
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=255.92 Aligned_cols=235 Identities=10% Similarity=0.103 Sum_probs=197.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEecC-------------------------------------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---RVRTFGG------------------------------------- 249 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~------------------------------------- 249 (475)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 467899999999966665 56899999999888 5555543
Q ss_pred -----------------CCCceEEEEeC--CCEE-EEEeCCCcEEEEECCC-CCccEEEec--CccCCEEEEEEcCCCCE
Q 011916 250 -----------------HQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRV-SSDYICKLA--GHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 250 -----------------h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~-~~~~~~~~~--~h~~~V~~l~~s~~~~~ 306 (475)
|...|.+++|+ +.+| ++|+.||.|++||+.. .+..+..+. .|...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999995 5675 8999999999999973 344555554 56789999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeE----EEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCceeeee--cC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL----RLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQLNSV--DT 377 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~----~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~ 377 (475)
|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ +.+ +++++ .|+.|++||+.+++++..+ .+
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~--~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSD--RDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEE--TTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE-EEEEc--CCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999998876543 67789999999999999 764 45544 7999999999999888774 47
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-------------------------CcceEEEEECC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-------------------------SLRVLYLATSP 432 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~l~~sp 432 (475)
...|.+++|+ ++++|++ ++.|+.|++||+.+++.+..+..+ ...|..++|+|
T Consensus 241 ~~~v~~~~~s-d~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLS--AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SSCEEEEEEC-STTEEEE--EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCceEEEEEC-CCCEEEE--EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 7899999999 9999998 789999999999999988887632 35689999999
Q ss_pred CCCEEEEEe-CCCCEEEEec
Q 011916 433 DGQTIVTGA-GDETLRFWNV 451 (475)
Q Consensus 433 dg~~l~s~s-~Dg~I~iW~~ 451 (475)
++++|++++ .|+.|++|++
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 999999999 8999999999
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=273.10 Aligned_cols=239 Identities=20% Similarity=0.375 Sum_probs=202.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~ 240 (475)
+.-.|++++|+++ .+++++.||.|+||++.++ +....+. +|.+.|++++|+++ +++|++|+.||.|++||+.+
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 3456899999986 4777778999999999854 3344443 78999999999987 99999999999999999998
Q ss_pred Ce--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcC-----------
Q 011916 241 CK--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSH----------- 302 (475)
Q Consensus 241 ~~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~----------- 302 (475)
++ .+..+.+|...|.+++|+ +++|++|+.||.|++||++... .....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 87 777888999999999995 6799999999999999998542 34556788999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCC----ceeEEEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce--
Q 011916 303 --DDRELASGGNDNQLLVWNQHSQ----QPTLRLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ-- 371 (475)
Q Consensus 303 --~~~~lasg~~Dg~I~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~-- 371 (475)
++.+|++|+.||.|++||++++ .....+.+|...|.+++|+|+ +. ++++++ .|+.|++||+.++..
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s--~Dg~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVS--QDRTCIIWTQDNEQGPW 243 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEE--SSSCEEEEEESSSSSCC
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEe--cCCEEEEecCCCCCCcc
Confidence 5899999999999999999877 455677889999999999999 56 555554 899999999988742
Q ss_pred ----eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 372 ----LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 372 ----~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.....+...|.+++|+|+++.+++ |+.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 244 KKTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL 285 (753)
T ss_dssp BCCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCS
T ss_pred eeEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCC
Confidence 222236678999999999999998 88899999999874
No 117
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.3e-28 Score=244.05 Aligned_cols=257 Identities=21% Similarity=0.343 Sum_probs=207.4
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Cee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~ 243 (475)
+..+|++++|+++ . +++++.|+.|+|||+.+++....+. +|...+.+++|+ +.+|++|+.|+.+++||... ...
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 4557999999997 4 5566679999999999999888776 889999998874 67999999999999999876 456
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCC-CEEEEE--eCCCc
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDD-RELASG--GNDNQ 315 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~-~~lasg--~~Dg~ 315 (475)
+..+.+|...+..+.| ++.++++++.|+.|++|+..... ..+.....|...|.+++|+|++ ..++++ +.|+.
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 6788899999999999 46899999999999999997433 2456778899999999999955 466654 57999
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEE
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~ 394 (475)
|++||+.+++.+..+..| ..+.++.|+|++..+++++ |..|+.|++||+.+++++..+. |.+.|.+++|+|+|++|+
T Consensus 303 I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999999999988887654 5789999999999777665 4689999999999999999885 678999999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
+ |+.|+.|+|||+....+....+.+...+....+
T Consensus 381 S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 381 S--AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp E--EETTTEEEEECCSCSSCC---------------
T ss_pred E--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 8 889999999999877666665555544443333
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5e-29 Score=252.45 Aligned_cols=240 Identities=20% Similarity=0.388 Sum_probs=200.8
Q ss_pred CCCceeEEecCCC--CEEEE-EcCCeEEEEECCC----------CcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAV-GLGTCVYLWTASN----------SKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~-~~~~~V~lw~~~~----------~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~ 232 (475)
+...+++++|+++ .++++ +.++.|++|++.+ ......+. +|...|++++|+|++. +|++|+.||.
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 3456888999986 45555 4589999999986 34444443 7889999999999988 9999999999
Q ss_pred EEEEECCCCee-------eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEE
Q 011916 233 VQVWDGTQCKR-------VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 233 v~iwd~~~~~~-------~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~ 300 (475)
|++|++.++.. ...+.+|...|.+++|+ +.+|++++.||.|++||++... ..+..+..|...|.+++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 45677899999999995 4799999999999999998542 566777899999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----------
Q 011916 301 SHDDR-ELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN---------- 368 (475)
Q Consensus 301 s~~~~-~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~---------- 368 (475)
+|++. +|++|+.||.|++||++. ..++..+..|...|.+++|+|++..++++++ .|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccc
Confidence 99887 799999999999999997 5678889999999999999999988888876 899999999987
Q ss_pred ----Cceeeee-cCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCC
Q 011916 369 ----GHQLNSV-DTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 369 ----~~~~~~~-~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~ 411 (475)
.+.+..+ .+...|.+++|+|+++ .+++ +..||.|+||++..
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 2444444 3567899999999999 5555 67899999999864
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.1e-28 Score=247.04 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=220.9
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-----EecCCCCceEEEEe--CC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR-----TFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~-----~~~~h~~~v~~l~~--~~ 261 (475)
.|+.||..++....+..+.....+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|...|.+++| ++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence 556666655643333333334567799999977788888888999999999998887 44588999999999 56
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEeccccceeEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las-g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l 340 (475)
.++++++.|+.|++||++ ....+..+..|...+.+++|+|+++.+++ ++.|+.|++||+++++.+..+.. ...+.++
T Consensus 182 ~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~ 259 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL 259 (433)
T ss_dssp EEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred EEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence 899999999999999998 56677778889999999999999998855 44799999999999988777665 4568999
Q ss_pred EECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q 011916 341 AWSPHQSSLLASGGGT-----ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
+|+|+++.+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++ +..++.|++||+.+++.+
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEECCCCcEE
Confidence 9999999777765211 3889999999999988888777789999999999887664 678999999999999888
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeC---------------CCCEEEEecCCCCCCCCccc
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAG---------------DETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~---------------Dg~I~iW~~~~~~~~~~~~~ 462 (475)
..+. +...+.+++|+|+|++|++++. ||.|++||+..+........
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 8776 6778999999999999988876 57999999988765554433
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=247.53 Aligned_cols=233 Identities=8% Similarity=0.032 Sum_probs=188.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCC--------CCccE-E
Q 011916 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRV--------SSDYI-C 286 (475)
Q Consensus 216 ~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~--------~~~~~-~ 286 (475)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++++.|++|++|+... ....+ .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 345678899999999999999999998888876 456777778777 99999999999997652 12222 2
Q ss_pred EecCccCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSH--DDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
....|...|.+++|+| ++++|++|+.||.|++||+++++.+..... |...|.+++|+|++. ++++|+ .|+.|++
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~--~dg~i~i 196 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYS--PDGILDV 196 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEEC--TTSCEEE
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEc--CCCEEEE
Confidence 3346778999999999 999999999999999999999988766643 556899999999998 556654 8999999
Q ss_pred EECCCCcee-eeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---CCcceE--EEEECCCCC
Q 011916 364 WNTSNGHQL-NSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---HSLRVL--YLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V~--~l~~spdg~ 435 (475)
||+++++.+ ..+. |...|.+++|+|++.+|++ ++ ++.|++||+++.+.+..+.. |...+. +++|+|+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999999887 5554 5789999999999999998 55 45999999998876655443 444444 699999999
Q ss_pred EEEEEeC-CCCEEEEecCCCCCC
Q 011916 436 TIVTGAG-DETLRFWNVFPSLKA 457 (475)
Q Consensus 436 ~l~s~s~-Dg~I~iW~~~~~~~~ 457 (475)
+|++++. |+.|++|++....+.
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEecCCCCcEEEEEEcccccc
Confidence 9999998 999999999766543
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.2e-29 Score=248.46 Aligned_cols=238 Identities=12% Similarity=0.069 Sum_probs=187.3
Q ss_pred CCceeEEecCCCCEEEEE-----------cCCeEEEEECCCCcE-EEE---eeC----CCCCcEEEEEEcCCCCEEEEEe
Q 011916 168 DFYLNLVDWSSQNVLAVG-----------LGTCVYLWTASNSKV-TRL---CDL----GPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~-----------~~~~V~lw~~~~~~~-~~~---~~~----~~~~~V~~v~~spdg~~la~g~ 228 (475)
+..+.+++++++.+++++ .++.+++|++..... ... ... .+...+.+++|+|||++||+++
T Consensus 73 ~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 73 DDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp SCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred CCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 335677888776666553 356799998765432 111 111 3446799999999999987665
Q ss_pred --CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE-EEecCccCCEEEEEEcCC
Q 011916 229 --NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI-CKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 229 --~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~s~~ 303 (475)
.|++|+|||+.+++++..+. |...|.+++|+ +.+|++++.++ +.+|+........ .....|...|.+++|+|+
T Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp SCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred CCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence 68999999999999998886 77889999994 68888888554 5566655344333 345678889999999999
Q ss_pred CCEEEEEeCCC----cEEEEECCCCce----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 304 DRELASGGNDN----QLLVWNQHSQQP----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 304 ~~~lasg~~Dg----~I~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
++++++++.|+ .+++|++..... ...+.+|...|.+++|+|+|+ ++++|+ .|+.|+|||+.+++++..+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs--~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLAS--NDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEc--CCCEEEEEECCCCcEEEEe
Confidence 99999999887 688899876643 345678999999999999999 455554 8999999999999999886
Q ss_pred --cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 376 --DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 376 --~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.|...|++++|+|+|++|++ |+.|++|+|||++..
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCTT
T ss_pred cCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 37789999999999999999 889999999999743
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-29 Score=252.07 Aligned_cols=253 Identities=13% Similarity=0.116 Sum_probs=199.2
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.-.+.+++|+|+. .+.+|++.+++....+.+.+...|.+++|+|+|++||+++.||.|+|||.+. ++..
T Consensus 51 h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 51 NSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp BGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred CCccEEEEEECCCC--------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 44567788888876 4445555544433455556688999999999999999999999999999654 6666
Q ss_pred ecCCCC-----ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc------cEEEe----cCccCCEEEEEEcCCCCEEEE
Q 011916 247 FGGHQT-----RAGVLAW--NSRILSSGSRDRNILQHDLRVSSD------YICKL----AGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 247 ~~~h~~-----~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~----~~h~~~V~~l~~s~~~~~las 309 (475)
+. |.. .|.+++| +|++|++|+.||+|++||+..... .+..+ .+|...|.+++|+||| +++
T Consensus 121 l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 77 665 5999999 579999999999999999985321 24565 6788899999999999 888
Q ss_pred EeCCCcEEEEECCCCce---eEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeecCCCCeeEE
Q 011916 310 GGNDNQLLVWNQHSQQP---TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVDTGSQVCNL 384 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~~---~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~~~~~v~~l 384 (475)
++.|+.|++||+..+.. ..++ ..|...|.+++|+ +. .+++++ ++.|++||+.+++. .....+.+.+..+
T Consensus 198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHII 271 (588)
T ss_dssp EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence 99999999999988773 3456 3788999999999 45 555553 69999999999888 5555788999999
Q ss_pred EE--cCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 385 AW--SKNVNELVSTHGYSQNQIMVWKYPSM-----------------------AKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 385 ~~--s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
.| +|++..+++ ++.+|. ++|..... ..+..+. +...|.+++|||||+.+|+
T Consensus 272 a~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 272 PLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred EeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence 99 999999888 888999 99987421 1111222 2456999999999999998
Q ss_pred EeC
Q 011916 440 GAG 442 (475)
Q Consensus 440 ~s~ 442 (475)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.9e-26 Score=229.45 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=223.5
Q ss_pred ceeEEecCCC-C-EEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-N-VLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~ 245 (475)
.+.+++|+++ . +++++ .++.|++||..+++....+.. ...+.+++|+|++++|++++ .++.|++||+.+++.+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 3688999987 3 43444 689999999999998887753 34899999999999886555 56999999999999988
Q ss_pred EecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE-EEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~ 321 (475)
.+..+ ..+.+++|+ ++.| ++++.|+.|++||+. .++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+
T Consensus 111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 88755 467899995 5555 788889999999998 55666666655 457999999999987 57778899999999
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
++++.+..+. +...+.+++|+|++..+++++.+..++.|++||+.+++.+..+..+..+.+++|+|+++.++++ +..+
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSFX 265 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETTT
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cCCC
Confidence 9998777665 5668899999999998887653225899999999999999988888889999999999988654 6789
Q ss_pred CeEEEEECCCCceEEEecCCCcceE---EEEECCCC----------------------CEEEEEeCCCCEEEEecCCCCC
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVL---YLATSPDG----------------------QTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg----------------------~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|.++++|++..+..
T Consensus 266 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 266 NTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9999999999999988877655421 12222211 2455666788999999977653
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=2.2e-26 Score=221.74 Aligned_cols=251 Identities=19% Similarity=0.364 Sum_probs=206.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...+|+||+++ +||+|. |++|+|||+.+++++..+. +|...|.+++|+ +++|++|+.||+|++||++ .++.+.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEE
Confidence 45789999876 777775 8999999999999888765 677889999994 6899999999999999998 677888
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..++|++++..+++ ++ .|+.|++||
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~--~d~~i~iwd 178 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS-GG--NDNLVNVWP 178 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEE
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE-Ee--cCcceeEEE
Confidence 89999999887665 5679999999999999999865 455677889999999999999996555 43 799999999
Q ss_pred CCCCceee-----eecCCCCeeEEEEcCCCCeEE-EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 366 TSNGHQLN-----SVDTGSQVCNLAWSKNVNELV-STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 366 ~~~~~~~~-----~~~~~~~v~~l~~s~~~~~l~-~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
+.+++... ...+...|..+.+++++..++ ++.+..++.|++||........... +...+..+.|++++..+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 99876432 224667899999999877655 3457788999999999888776654 6678999999999998887
Q ss_pred Ee--CCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 440 GA--GDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 440 ~s--~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
++ .|+.|++||+.++.....+. |...|+++.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 65 79999999999887766654 455565544
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.5e-27 Score=237.07 Aligned_cols=291 Identities=14% Similarity=0.070 Sum_probs=222.0
Q ss_pred eeEEecCCC--CEE-EEE----cCC----eEEEEEC--CCCcEEEE--eeCCCCCcEEEEEEcC--------------CC
Q 011916 171 LNLVDWSSQ--NVL-AVG----LGT----CVYLWTA--SNSKVTRL--CDLGPGDSVCSVQWTR--------------EG 221 (475)
Q Consensus 171 v~~l~ws~~--~~l-a~~----~~~----~V~lw~~--~~~~~~~~--~~~~~~~~V~~v~~sp--------------dg 221 (475)
++..+|++. .++ +++ .+| .|+|||+ .+++.+.. +. +|...+..+++.+ .+
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 455788775 344 443 256 8999999 88886532 32 5666677776664 25
Q ss_pred CEEEEEeCC------CeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCC---cEEEEECCCCCccEEEecC
Q 011916 222 SYISVGTNL------GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR---NILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 222 ~~la~g~~d------g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~ 290 (475)
..++.++.+ +.|++||+. +...+.+.+|...+.+++|+ ++.|++++.++ .|++||+.. ++. ..+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeec
Confidence 667766654 799999987 45567788899999999994 68999999875 999999984 333 45677
Q ss_pred ccCCEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEE
Q 011916 291 HKSEVCGLKWSHDDRELA-SGGNDNQ--LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWN 365 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~la-sg~~Dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd 365 (475)
|...+.+++|+|||++|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|+|+.|++++. .++ .|++||
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEEEEE
Confidence 888999999999999888 6666554 99999998765 567778889999999999998887763 344 788889
Q ss_pred CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
+.+++......+...+..++|+|+|++|+++... .+..|++||+.+++. ..+..|. .+.+++|+|||++|++++.|+
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 9988765544566778899999999999885321 135899999998876 4566664 899999999999999988877
Q ss_pred ---CEEEEecCCCCCCCCcccCCcccccc
Q 011916 445 ---TLRFWNVFPSLKAPALVKDTSLWSLG 470 (475)
Q Consensus 445 ---~I~iW~~~~~~~~~~~~~~~~v~s~~ 470 (475)
.|++||+..+.......+.+.++++.
T Consensus 376 ~~~~l~~~d~~g~~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 376 MGSVLNLVSTDGRFKARLPATDGQVKFPA 404 (415)
T ss_dssp TEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred CccEEEEEECCCCcEEEeeCCCCCCcCCc
Confidence 79999998665544444555665544
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5.8e-27 Score=234.52 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=166.4
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEee----CCCCCcEEEEEEcC--------CCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCD----LGPGDSVCSVQWTR--------EGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~----~~~~~~V~~v~~sp--------dg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+++++.|++|+|||..+++...... .+|.+.|.+|+|+| ||++||+|+.|++|+|||+.++..+..+.
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence 5566679999999999987654322 27999999999998 88999999999999999999998888888
Q ss_pred CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccE------------------------EEecCccCCEEEEEEc
Q 011916 249 GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYI------------------------CKLAGHKSEVCGLKWS 301 (475)
Q Consensus 249 ~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~------------------------~~~~~h~~~V~~l~~s 301 (475)
.|...|.+++|++ .+|++|+.|++|++||++...... ....+|...|.++.|+
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 9999999999964 589999999999999998543211 1124677888999987
Q ss_pred -CCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEE------------------C-CCCCcEEEEecCCCCCeE
Q 011916 302 -HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAW------------------S-PHQSSLLASGGGTADRCI 361 (475)
Q Consensus 302 -~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~------------------s-p~~~~ll~sg~Gs~d~~I 361 (475)
++++.|++++.|+.+++||+..++....+..|...+..+.+ + +.+..++++|+ .|+.|
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V 341 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLI 341 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEE
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEE
Confidence 79999999999999999999887666555555444433333 3 33444666655 89999
Q ss_pred EEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 362 RFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 362 ~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
++||+.+++++... .+...|.+++|+|+|++|++ ++ ++.+.+|.+.
T Consensus 342 ~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~--as-~~Gv~lvrL~ 388 (393)
T 4gq1_A 342 QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI--AT-EGSVLLTRLM 388 (393)
T ss_dssp EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE--EE-SSEEEEEEEG
T ss_pred EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE--Ee-CCCeEEEEEe
Confidence 99999998877654 57789999999999999998 54 4557666653
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.4e-24 Score=209.32 Aligned_cols=267 Identities=11% Similarity=0.097 Sum_probs=204.3
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee-eEEecCCCCceEEEEe
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKR-VRTFGGHQTRAGVLAW 259 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~-~~~~~~h~~~v~~l~~ 259 (475)
++.+.++.|.+||..+++.......+ ...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+.....+++|
T Consensus 14 v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (331)
T 3u4y_A 14 VVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI 91 (331)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred EEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence 33445889999999999998887643 4556 9999999997777666 88999999999987 7777767666665787
Q ss_pred --CCCEEEEEeCCC---cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCc-EEEEECCCCceeE----
Q 011916 260 --NSRILSSGSRDR---NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQ-LLVWNQHSQQPTL---- 328 (475)
Q Consensus 260 --~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~-I~iwd~~~~~~~~---- 328 (475)
++++|+++..++ .|.+||+. .++.+..+.. .....+++|+|+|++|+++ ..++. |.+|++.....+.
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CCCCCEEEEecCCCCcccEEEEECC-CCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 467888555553 89999998 4555555543 4457999999999855554 55688 9999988544331
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
........+..++|+|+++++++++. .++.|.+||+.+++. +..+..+..+..++|+|+|++++++ ...++.|.
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~ 246 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVF 246 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEE
Confidence 22234456899999999998888865 789999999999998 8888888889999999999988775 44678899
Q ss_pred EEECCCCce--EEEecCC----Ccc---eEEEEECCCCCEEEEEeC-CCCEEEEecCCCC
Q 011916 406 VWKYPSMAK--VSTLTGH----SLR---VLYLATSPDGQTIVTGAG-DETLRFWNVFPSL 455 (475)
Q Consensus 406 iwd~~~~~~--~~~l~~h----~~~---V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~ 455 (475)
+||..+++. +..+..+ ... +..++|+|||++|++++. ++.|.+|++....
T Consensus 247 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 999998876 4444322 222 245899999998876655 5699999998654
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.5e-24 Score=225.93 Aligned_cols=274 Identities=13% Similarity=0.139 Sum_probs=218.1
Q ss_pred cCCCC-EEE-EEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEEecCCC
Q 011916 176 WSSQN-VLA-VGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG--TQCKRVRTFGGHQ 251 (475)
Q Consensus 176 ws~~~-~la-~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~--~~~~~~~~~~~h~ 251 (475)
+++++ +++ ...++.|.+||..++++...+..++. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 45543 333 34488999999999999888875544 889999999999999999999999999 8888888887 44
Q ss_pred CceEEEEeC------CCEEEEEe-CCCcEEEEECCCCCccEEEecC----------cc-CCEEEEEEcCCCC-EEEEEeC
Q 011916 252 TRAGVLAWN------SRILSSGS-RDRNILQHDLRVSSDYICKLAG----------HK-SEVCGLKWSHDDR-ELASGGN 312 (475)
Q Consensus 252 ~~v~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~-~~V~~l~~s~~~~-~lasg~~ 312 (475)
..+..++|+ +++|++++ .+++|.+||.. ..+.+..+.. |. ..+.++.+++++. ++++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 567888874 57888887 58999999997 5566665543 22 3789999999766 5566678
Q ss_pred CCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEE
Q 011916 313 DNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLA 385 (475)
Q Consensus 313 Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~ 385 (475)
++.|.+||+.+.+.+. .+ .+...+.+++|+|+++++++++. .+++|.+||+.+++++..+.. .+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 8999999998876544 33 35667889999999998888765 789999999999999888763 2223333
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEecCCCcceEEEEECCCCCEEEEEe-------CCCCEEEEec
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYLATSPDGQTIVTGA-------GDETLRFWNV 451 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~Dg~I~iW~~ 451 (475)
++|++..++++....++.|.+||+.+ ++.+.++.+|...+..++++|||++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 47875555554233689999999988 899999999999999999999999999987 2779999999
Q ss_pred CCCCCC
Q 011916 452 FPSLKA 457 (475)
Q Consensus 452 ~~~~~~ 457 (475)
.+.+..
T Consensus 457 ~~~~~~ 462 (543)
T 1nir_A 457 KNLDAK 462 (543)
T ss_dssp TCTTSC
T ss_pred CCCCCC
Confidence 988876
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.5e-24 Score=209.39 Aligned_cols=267 Identities=10% Similarity=0.156 Sum_probs=195.4
Q ss_pred EEEE-EcCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCe--eeEEecCCCCc
Q 011916 181 VLAV-GLGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-GQVQVWDGT--QCK--RVRTFGGHQTR 253 (475)
Q Consensus 181 ~la~-~~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g~v~iwd~~--~~~--~~~~~~~h~~~ 253 (475)
++++ +.++.|++|++. +++........+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 3444 458999999985 4444333333567788999999999999998886 999999987 444 344555444 7
Q ss_pred eEEEEeC--CCEEEEEe-CCCcEEEEECCC--CCccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce
Q 011916 254 AGVLAWN--SRILSSGS-RDRNILQHDLRV--SSDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHS-QQP 326 (475)
Q Consensus 254 v~~l~~~--~~~l~sgs-~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~-~~~ 326 (475)
+..++|+ +++|++++ .++.|.+||+.. .......+.. ...+.+++|+|++++|++++ .++.|++||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 8888884 56666655 588999999951 1223333443 34588999999999888887 889999999987 544
Q ss_pred eE----EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeec---C----CCCeeEEEEcCCC
Q 011916 327 TL----RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GHQ--LNSVD---T----GSQVCNLAWSKNV 390 (475)
Q Consensus 327 ~~----~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~~--~~~~~---~----~~~v~~l~~s~~~ 390 (475)
.. .+.. ....+..++|+|+++++++++. .++.|.+|++.. ++. ...+. . ...+..++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 32 2222 3457889999999998888765 789999999953 433 22221 1 2356689999999
Q ss_pred CeEEEEEecCCCeEEEEECC----CCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP----SMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
++|+++ +..++.|.+||+. ..+.+..+..+.. +..++|+|+|++|++++ .|+.|.+|+++.
T Consensus 243 ~~l~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 243 RHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CEEEEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 988864 5578999999998 3455555655554 88999999999888887 589999997764
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=6.9e-24 Score=213.74 Aligned_cols=247 Identities=14% Similarity=0.073 Sum_probs=196.4
Q ss_pred CCEEEEEcC------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEecC
Q 011916 179 QNVLAVGLG------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG---QVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 179 ~~~la~~~~------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg---~v~iwd~~~~~~~~~~~~ 249 (475)
..++.++.+ +.|++||+.++....+. +|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 356666654 79999999876655444 5778999999999999999999875 9999999988775 5667
Q ss_pred CCCceEEEEeC--CCEEE-EEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEEC
Q 011916 250 HQTRAGVLAWN--SRILS-SGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQ 321 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~ 321 (475)
|...+.+++|+ ++.|+ +++.++. |.+||+.. + ....+..|...+.+++|+|||++|++++.+ + .|++||+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~-~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-G-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-C-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-C-CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 88899999995 56666 6766665 89999973 3 346778888999999999999999988864 4 6888899
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.+++. ..+..+...+.+++|+|+|++|++++....+..|++||+.+++......+ ..+..++|+|+|+.|+++ ..+
T Consensus 299 ~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~--s~~ 374 (415)
T 2hqs_A 299 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYS--SSQ 374 (415)
T ss_dssp TSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEE--EEE
T ss_pred CCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEE--EcC
Confidence 88764 45556778899999999999887776411246899999999887543333 489999999999999884 334
Q ss_pred C---eEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 402 N---QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 402 g---~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
+ .|++||+. +.....+.+|.+.|.+++|+|.-.
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 4 79999986 566778899999999999999643
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.3e-24 Score=222.36 Aligned_cols=285 Identities=12% Similarity=0.142 Sum_probs=225.0
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCC
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTR----EGSYISVGTN-LGQVQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~sp----dg~~la~g~~-dg~v~iwd~~~~ 241 (475)
+..++++|+ .+++++.++.|.+||+ .+++....+. +...+..++|+| ||++|++++. +++|.|||..++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 677889987 4666677999999999 7888777665 456789999999 9999999985 899999999999
Q ss_pred eeeEEecCC-----------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 242 KRVRTFGGH-----------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 242 ~~~~~~~~h-----------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
+++..+..+ ...+..+.++ +.++++...++.|.+||+............+...+.++.|+|+|++|
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 998887642 2378888884 35777888899999999985433332223456678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cceeeee
Q 011916 308 ASGG-NDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------GHQLNSV 375 (475)
Q Consensus 308 asg~-~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~~~~~~ 375 (475)
++++ .+++|.+||..+++.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ ++++..+
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 7655 588999999999998887764 54433333 4787566777752 2489999999998 8899998
Q ss_pred cC-CCCeeEEEEcCCCCeEEEEEec-------CCCeEEEEECCCCceE-EEe--------cCCCcceEEEEECCCCCEEE
Q 011916 376 DT-GSQVCNLAWSKNVNELVSTHGY-------SQNQIMVWKYPSMAKV-STL--------TGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 376 ~~-~~~v~~l~~s~~~~~l~~~~g~-------~dg~I~iwd~~~~~~~-~~l--------~~h~~~V~~l~~spdg~~l~ 438 (475)
.. +..+..+.++|++++|++ +. .++.|.+||+.+++.. ..+ ..+..++..+.|+|||+.|+
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 75 457789999999999999 44 2679999999998877 443 35678899999999999988
Q ss_pred EEe-----CCCCEEEEecCCCCCCCCcc
Q 011916 439 TGA-----GDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 439 s~s-----~Dg~I~iW~~~~~~~~~~~~ 461 (475)
++. .|+.|.|||..+.++...+.
T Consensus 495 ~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeecCCCCCCeEEEEECCCceEEEeec
Confidence 763 47999999999988766543
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=7.8e-25 Score=207.66 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=195.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEecCC-CCceEEEEe--CC
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKRVRTFGGH-QTRAGVLAW--NS 261 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~~~~~~~h-~~~v~~l~~--~~ 261 (475)
.++.|++||+.+++...+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++| ++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4789999999999887665 4678899999999999999987 68999999999 8777766666 367888888 46
Q ss_pred CEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEEeccccce
Q 011916 262 RILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA-SGGNDNQLLVWNQHS-QQPTLRLTEHTAAV 337 (475)
Q Consensus 262 ~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la-sg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v 337 (475)
++|++++ .++.+.||.+.........+..+. .+..++|+|++++|+ +++.|+.+.||++.. ......+..+...+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 8899888 445666666653334445555444 489999999999887 777889999998642 23345666788899
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEEEEcCCCCeEEEEEec---------CCCeEEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGY---------SQNQIMV 406 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~---------~dg~I~i 406 (475)
.+++|+|+++.+++++. .++.+++|++. .+..+..+ .+...+..+.|+|++++|++.... .++.|++
T Consensus 176 ~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 99999999998887764 68888888875 34444444 345678899999999999885332 1257999
Q ss_pred EECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 407 WKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 407 wd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
||+.+++. +..+.+|...+..++|+|||++|++++.|.
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99988765 445557888999999999999999887664
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=2.1e-23 Score=204.05 Aligned_cols=266 Identities=15% Similarity=0.115 Sum_probs=214.1
Q ss_pred eeEEecCCC-CEEEEEc--------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 011916 171 LNLVDWSSQ-NVLAVGL--------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQ 240 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~--------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~ 240 (475)
+..++|+++ +.+.++. ++.|++||..+++....+.. ...+.+++|+|+|++++++ ..++.|.+||..+
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 456888886 4444444 56899999999998887764 3457789999999966655 4479999999999
Q ss_pred CeeeEEecCCCCc---------eEEEEe--CCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 241 CKRVRTFGGHQTR---------AGVLAW--NSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 241 ~~~~~~~~~h~~~---------v~~l~~--~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
++.+..+..+... +.+++| +++.+++++ .++.|.+||+. ..+.+..+..+...+.+++|+|++++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCCCccceEEECCCCCEE
Confidence 9998888765432 677888 467666665 57899999998 566666666566678899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+..+.. ..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~~ 276 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPES-LA 276 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSSC-CC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCCC-ce
Confidence 9999999999999999988877664 4556788999999998888764 679999999999999888876554 67
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
++|+|+++.++++ ...++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..++
T Consensus 277 ~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVT-HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999999987774 557899999999999988888754 4689999999999777766553
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-24 Score=233.60 Aligned_cols=277 Identities=15% Similarity=0.095 Sum_probs=211.4
Q ss_pred ceeEEecCCC-C-EEEEEc-CC-----eEEEEECCCCcEEEEeeCCC-C----------------------CcEEEEEEc
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GT-----CVYLWTASNSKVTRLCDLGP-G----------------------DSVCSVQWT 218 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~-----~V~lw~~~~~~~~~~~~~~~-~----------------------~~V~~v~~s 218 (475)
.+..++|||+ . +++++. ++ .|++||+.+++...+..... . ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678999997 4 555555 66 89999999999877775321 1 237899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
|||++|++++. +.|.+||+.++. ....+..|...+..++| +|+.|+.++ ++.|.+||+. .+........+...
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~-~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA-SGRQMQLTADGSTT 194 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT-TTEEEECCCCCCSS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecC-CCCEEEeccCCccc
Confidence 99999999987 999999998873 45567778888999999 468888887 4699999997 34443333333332
Q ss_pred ----------------EEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 011916 295 ----------------VCGLKWSHDDRELASGGNDN---------------------------------QLLVWNQHS-Q 324 (475)
Q Consensus 295 ----------------V~~l~~s~~~~~lasg~~Dg---------------------------------~I~iwd~~~-~ 324 (475)
+.++.|||||++|++++.|+ .|++||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47799999999999988765 789999988 7
Q ss_pred ceeEEEe--ccccceeEEEECCCCCcEEEEec--CCCCCeEEEEECCCCceeeeecCCC-----CeeEEEEcCCCCeEEE
Q 011916 325 QPTLRLT--EHTAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTSNGHQLNSVDTGS-----QVCNLAWSKNVNELVS 395 (475)
Q Consensus 325 ~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~ 395 (475)
+...... .|...+..++| |||+.|+++.. +..+..|++||+.+++....+.... .+..++|+|+|+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 7654432 37788999999 99998887642 2346889999999998776664322 4568999999996666
Q ss_pred EEecCCCeEEEEECC-CCceEEEecCCCcceEEE-EECCCCCEEEEE-eCCC--CEEEEecCC
Q 011916 396 THGYSQNQIMVWKYP-SMAKVSTLTGHSLRVLYL-ATSPDGQTIVTG-AGDE--TLRFWNVFP 453 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l-~~spdg~~l~s~-s~Dg--~I~iW~~~~ 453 (475)
+..+|.+.||.+. .+. ...+..|...|..+ .|+|||+.|+.. +.|+ .++||++..
T Consensus 354 --~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 354 --SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp --ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred --ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 6678877777665 344 77888888889887 599999987654 4455 899999874
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.1e-24 Score=234.61 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=207.4
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---SVCSVQWTREGSYISVGTNL---------GQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---~V~~v~~spdg~~la~g~~d---------g~v~iwd 237 (475)
...++|+|+ .+++.+.++.|++||+.+++...++. .+.. .|.+++|+|||++|++++.+ +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 455889997 56666778999999999998877765 3433 48999999999999999874 7888999
Q ss_pred CCCCeeeEEec---CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----------------
Q 011916 238 GTQCKRVRTFG---GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV----------------- 295 (475)
Q Consensus 238 ~~~~~~~~~~~---~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V----------------- 295 (475)
+.+++. ..+. +|...+..++| +|+.|+.++. +.|++||+. .+........+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECC-CCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 998876 3333 45556888888 4688888886 799999998 444444444444333
Q ss_pred -EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEEecc------c
Q 011916 296 -CGLKWSHDDRELASGGNDN----------------------------------QLLVWNQHSQQPTLRLTEH------T 334 (475)
Q Consensus 296 -~~l~~s~~~~~lasg~~Dg----------------------------------~I~iwd~~~~~~~~~~~~h------~ 334 (475)
.++.|||||++|++++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999987553 7999999988765666554 5
Q ss_pred cceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeec--CCCCe----eEEEEcCCCCeEEEEEecCCC-----
Q 011916 335 AAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQLNSVD--TGSQV----CNLAWSKNVNELVSTHGYSQN----- 402 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~s~~~~~l~~~~g~~dg----- 402 (475)
..+..++|+|||+.+++... +..+..|++||+.++++...+. +...+ ..++|+|+|+.|+.+.+..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 67899999999996655432 2245789999999998766553 22333 378999999998875345566
Q ss_pred -eEEEEEC-CCCc--eEEEecCCCcceEE-EEECCCCCEEEEEeCC---CCEEEEecCCC
Q 011916 403 -QIMVWKY-PSMA--KVSTLTGHSLRVLY-LATSPDGQTIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 403 -~I~iwd~-~~~~--~~~~l~~h~~~V~~-l~~spdg~~l~s~s~D---g~I~iW~~~~~ 454 (475)
.|++||. ..+. ....+..+...+.. ++|+|||+.|+..+.+ +.++||++...
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5777883 4443 14555544444554 6999999999876655 78999999754
No 136
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=6.1e-24 Score=203.85 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=163.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCC----eEEEEECCCC----cEEEEeeCCCCCcEEEEEEcCCCCEEEEEe--CCCeEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGT----CVYLWTASNS----KVTRLCDLGPGDSVCSVQWTREGSYISVGT--NLGQVQ 234 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~----~V~lw~~~~~----~~~~~~~~~~~~~V~~v~~spdg~~la~g~--~dg~v~ 234 (475)
....|..+.+.|+ +++.++.++ .|+..-.... ...... .++...|.++ ++|+++.++. .|+.|+
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-~g~~~~v~~l---~~g~lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 85 AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-SGNIKAVLGL---TKRRLVSSSGTLSDQQVE 160 (356)
T ss_dssp CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE-EEEEEEEEEE---TTTEEEEEESSSTTCEEE
T ss_pred cCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe-CCCeEEEEec---CCCcEEEecccCCCCcEE
Confidence 3456777888886 777777754 2222222111 111111 1333334443 4555555543 489999
Q ss_pred EEEC-CCCeeeEEecCCCCceEEEEe-----CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCC
Q 011916 235 VWDG-TQCKRVRTFGGHQTRAGVLAW-----NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDR 305 (475)
Q Consensus 235 iwd~-~~~~~~~~~~~h~~~v~~l~~-----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~ 305 (475)
+|++ .+++.+..+.+|...+..++| ++.+|++|+.|++|+|||++ .++.+..+.+|. ..+++++|+|+|.
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 9999 558888888888887777666 34899999999999999998 567778887644 4678889999998
Q ss_pred EE------------EEEeCCCcEEEEECCCCceeEEE-----eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 306 EL------------ASGGNDNQLLVWNQHSQQPTLRL-----TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 306 ~l------------asg~~Dg~I~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +. ++++++ .|++|+|||+.+
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS--~DgTIkIWDl~t 314 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAIL--TSGTIAIWDLLL 314 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEE--TTSCEEEEETTT
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEc--CCCcEEEEECCC
Confidence 76 66888999999999999887655 2555554444444 44 666765 899999999999
Q ss_pred Cceeeeec-CCCCee-EEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 369 GHQLNSVD-TGSQVC-NLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 369 ~~~~~~~~-~~~~v~-~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
++++.++. +...+. .++|+|+|++|++ |+.|++|+|||+
T Consensus 315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 315 GQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp CSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 99999996 444444 6899999999999 899999999995
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=5.6e-23 Score=199.30 Aligned_cols=268 Identities=10% Similarity=0.012 Sum_probs=208.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEecC-C----CC
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTFGG-H----QT 252 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~~~~~-h----~~ 252 (475)
.+++++.++.|++||..+++....+..++.. .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+.. + ..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 3566778999999999999988877654432 4789999999987655 45578999999999988877653 2 12
Q ss_pred ceEEEEeC--CCEEEEEe------------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 253 RAGVLAWN--SRILSSGS------------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 253 ~v~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.+..++|+ ++.|+++. .++.|.+||+. ....+..+.. ...+.+++|+|++++|+++ ++.|++
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 56677884 67888876 67999999997 4555555543 4567889999999988888 689999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC-----------------------eEEEEECCCCceeeee
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR-----------------------CIRFWNTSNGHQLNSV 375 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-----------------------~I~iwd~~~~~~~~~~ 375 (475)
||+.+++.+..+..+.. ...+.|+|++..+++++. .++ .|.+||+.+++.. .+
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 99999988777665431 123488999997776543 333 4799999998875 32
Q ss_pred ---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 376 ---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 376 ---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+...+..++|+|+++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.|+.|++||+.
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ecCCCCCceeeEEECCCCCEEEE--e--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 24457888999999999998 4 689999999999888777643 467899999999999999999999999999
Q ss_pred CCCCCCCc
Q 011916 453 PSLKAPAL 460 (475)
Q Consensus 453 ~~~~~~~~ 460 (475)
+++....+
T Consensus 310 ~~~~~~~~ 317 (337)
T 1pby_B 310 TLEKKGQV 317 (337)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 88765543
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=6.9e-23 Score=220.13 Aligned_cols=277 Identities=12% Similarity=0.104 Sum_probs=207.1
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cee
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-----CKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-----~~~ 243 (475)
..+..++|+++..++++.++.|++||+.+++...+. .+...+.+++|+|||++||++ .++.|++||+.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 457889999998777778899999999999876665 456678899999999999995 679999999998 776
Q ss_pred eEEecCCCCc--------------eEEEEe--CCCEEEEEe---------------------------------CCCcEE
Q 011916 244 VRTFGGHQTR--------------AGVLAW--NSRILSSGS---------------------------------RDRNIL 274 (475)
Q Consensus 244 ~~~~~~h~~~--------------v~~l~~--~~~~l~sgs---------------------------------~dg~I~ 274 (475)
......+... +.+++| ++++|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 6554444332 478888 578888887 446799
Q ss_pred EEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-c-ccc---ceeEEEE
Q 011916 275 QHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-E-HTA---AVKAIAW 342 (475)
Q Consensus 275 iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-~-h~~---~v~~l~~ 342 (475)
+||+.. +...... ..|...+.+++|+|||++|++++.++ .|++||+.+++....+. . +.. .+..++|
T Consensus 239 ~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 239 IYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999973 3332222 24667899999999999999987765 89999999984333332 2 222 2467899
Q ss_pred CC--CCCcEEEEecCCCCCeEEEEECC-CCceeeeec-CCCCeeE-EEEcCCCCeEEEEEecCCC----eEEEEECCCCc
Q 011916 343 SP--HQSSLLASGGGTADRCIRFWNTS-NGHQLNSVD-TGSQVCN-LAWSKNVNELVSTHGYSQN----QIMVWKYPSMA 413 (475)
Q Consensus 343 sp--~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~-~~~~v~~-l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~ 413 (475)
+| +|+. ++++. .|+.+++|++. ++..+..+. +...+.. ++|+|+++.|+++ +..++ .|+.||..+++
T Consensus 318 sp~~dg~~-l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 318 LPGSNNQF-IWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTCSSEE-EEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEETTCCC
T ss_pred ecCCCCEE-EEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEcCCCC
Confidence 99 9984 45544 68888888875 566666664 3445666 7999999998875 33444 77888887765
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCCC
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPSL 455 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~~ 455 (475)
+..+. |...+..++|+|||++|+..+.+ +.|++||+.++.
T Consensus 394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 34444 67779999999999988876544 459999998765
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=4.9e-22 Score=194.58 Aligned_cols=263 Identities=12% Similarity=0.106 Sum_probs=188.4
Q ss_pred CCeEEEEE--CCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe--eeEEecCCCCceEEEEe
Q 011916 187 GTCVYLWT--ASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 187 ~~~V~lw~--~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~ 259 (475)
++.|++|. ..+++...+....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 34566655 4567665543334456778899999999 555544 6899999997765 44444556777888888
Q ss_pred --CCCEEEEEe-CCCcEEEEECCCCCcc--EEEecC---------ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CC
Q 011916 260 --NSRILSSGS-RDRNILQHDLRVSSDY--ICKLAG---------HKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQ 324 (475)
Q Consensus 260 --~~~~l~sgs-~dg~I~iwd~~~~~~~--~~~~~~---------h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~ 324 (475)
++++|++++ .++.|.+|++...+.. +..+.. +...+.+++|+|+|+++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 467787777 7899999999643332 222211 12348899999999966666678899999998 45
Q ss_pred ceeE--EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeecC-C------CCeeEEEEcCCC
Q 011916 325 QPTL--RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GHQ--LNSVDT-G------SQVCNLAWSKNV 390 (475)
Q Consensus 325 ~~~~--~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~~--~~~~~~-~------~~v~~l~~s~~~ 390 (475)
+... .+.. ....+..++|+|+|+++++++. .++.|.+|++.. ++. +..+.. . ..+..++|+|+|
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 4322 2222 2336788999999998888765 789999999874 543 222221 1 348889999999
Q ss_pred CeEEEEEecCCCeEEEEECC---CCceEEEecCCCcceEEEEECCCCCEEEEEeCC-CCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP---SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-ETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW~~~~ 453 (475)
++|+++ +..++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|+++.
T Consensus 252 ~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 252 HFLYVS-NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CEEEEE-EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CEEEEE-eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 988764 4568999999997 335666677777778999999999998888764 8999997754
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=2.7e-21 Score=190.43 Aligned_cols=262 Identities=8% Similarity=0.115 Sum_probs=189.0
Q ss_pred CCeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Ce--eeEEecCCCCceEE
Q 011916 187 GTCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL----GQVQVWDGTQ--CK--RVRTFGGHQTRAGV 256 (475)
Q Consensus 187 ~~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~--~~--~~~~~~~h~~~v~~ 256 (475)
++.|++|.+ .+++...+... +...+..++|+|+|++|++++.+ |.|.+|++.. ++ .+.....+......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 567888865 56777666554 56777889999999999999886 7999998765 43 33344445667778
Q ss_pred EEeCCCEEEEEe-CCCcEEEEECCCCCccE---E--Eec--------CccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 011916 257 LAWNSRILSSGS-RDRNILQHDLRVSSDYI---C--KLA--------GHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQ 321 (475)
Q Consensus 257 l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~---~--~~~--------~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~ 321 (475)
+++++++|++++ .++.|.+|++...+... . ... .+...+.+++|+|+|++|++++ .++.|.+|++
T Consensus 105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 888888777766 68899999997443221 1 111 1223468899999999776655 4789999998
Q ss_pred CCCce------e-------EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeec----CCCCee
Q 011916 322 HSQQP------T-------LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVD----TGSQVC 382 (475)
Q Consensus 322 ~~~~~------~-------~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~----~~~~v~ 382 (475)
..... + .....+...+..++|+|+|+++++++. .++.|.+||+.+++. +..+. ......
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 75431 1 112234556789999999998888764 689999999987754 22222 224567
Q ss_pred EEEEcCCCCeEEEEEecC-CCeEEEEECC--CCc--eEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 383 NLAWSKNVNELVSTHGYS-QNQIMVWKYP--SMA--KVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~-dg~I~iwd~~--~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
.++|+|+|++|+++ ... ++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|+++.
T Consensus 263 ~i~~spdg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 263 DIHLSPDGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEECTTSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred cEEECCCCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 99999999999774 334 6899999985 343 4555554 55688999999999988887 578999987764
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=1.6e-21 Score=197.41 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=191.7
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCC-----------cEEEE---eeCCCCCcEEEEEEcCCCCEEE----EEe
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS-----------KVTRL---CDLGPGDSVCSVQWTREGSYIS----VGT 228 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~-----------~~~~~---~~~~~~~~V~~v~~spdg~~la----~g~ 228 (475)
+..+++++|+++ .+++++....|++|+.... ..... ..+.+...|.+++|+|+|++|| +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 446788999986 5666666555999875311 11110 1124567899999999999999 678
Q ss_pred CCCeEEEEECCCC--------e---eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 229 NLGQVQVWDGTQC--------K---RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 229 ~dg~v~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
.|+.|+|||+.++ + .+..+.+|...|.+++|+ +++|++++.||+|++||++. ........+|...
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~~ 194 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPSTVA 194 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGGGC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCCCc
Confidence 8999999998654 2 245567899999999995 46899999999999999984 4555566778999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc-------ccceeEEEECCCCCcEEEEecCCCC------CeE
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH-------TAAVKAIAWSPHQSSLLASGGGTAD------RCI 361 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~ll~sg~Gs~d------~~I 361 (475)
|.+++|+|+|++|++|+.||.|++||.+ ++....+..| ...|.+++|++++.++++... .+ ..+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~--~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA--ADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--TTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--CCCccCCCCce
Confidence 9999999999999999999999999998 5555555433 348999999998876666554 33 349
Q ss_pred EEEECCCCc-----eeeee-cC-------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ce-EEEe-------
Q 011916 362 RFWNTSNGH-----QLNSV-DT-------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AK-VSTL------- 418 (475)
Q Consensus 362 ~iwd~~~~~-----~~~~~-~~-------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~-~~~l------- 418 (475)
++|++.+.. ....+ .. ......+.+-++.+.++++ +...+.|.++..... .. ...+
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~-s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~ 350 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA-SAASTEVSILARQSDQINWESWLLEDSSRAE 350 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE-ETTCSBCEEEEECTTSSCEEEEEECGGGCCB
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe-cCCCCceeEEEecCCCCccEEEecccccccc
Confidence 999998652 11111 11 1122234444777777665 444555555554221 00 0111
Q ss_pred -c----CCCcceEEEEECC---------------CCCEEEEEeCCCCEEEEecCC
Q 011916 419 -T----GHSLRVLYLATSP---------------DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 -~----~h~~~V~~l~~sp---------------dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
. ..+..+.++++.- --..|...+.||.|..|.+..
T Consensus 351 lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 351 LPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 0 1222334444421 124788889999999999886
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=2.6e-22 Score=215.61 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=195.0
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcE--EEEeeCCC---------------CCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKV--TRLCDLGP---------------GDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~--~~~~~~~~---------------~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
+.+.|..+.++..+.++ | +||+.+++. ..+..... ...|.+++|+|| +.++++. ++.|+
T Consensus 29 ~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~ 104 (706)
T 2z3z_A 29 VGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV 104 (706)
T ss_dssp TTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred CCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence 33778845666666666 8 999999987 44443110 146999999999 6666664 49999
Q ss_pred EEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC----CccEEEecCccCC--------------
Q 011916 235 VWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS----SDYICKLAGHKSE-------------- 294 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~h~~~-------------- 294 (475)
+||+.+++.... ..+...+.+++| +++.|+++ .++.|.+||+... +........+...
T Consensus 105 ~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~ 182 (706)
T 2z3z_A 105 GFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI 182 (706)
T ss_dssp EEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTC
T ss_pred EEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCC
Confidence 999998876544 446667888888 46788885 6899999999841 4444433333333
Q ss_pred EEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEEe--ccccceeE
Q 011916 295 VCGLKWSHDDRELASGG---------------------------------NDNQLLVWNQHSQQPTLRLT--EHTAAVKA 339 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~---------------------------------~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~ 339 (475)
+.++.|+|||++|++++ .+..|++||+.+++...... .|...+..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 48899999999999987 44689999999887544332 46678999
Q ss_pred EEECCCCCcEEEEec--CCCCCeEEEEECCCCceeeeec---CCC---CeeEEEEcC--CCCeEEEEEecCCCeEEEEEC
Q 011916 340 IAWSPHQSSLLASGG--GTADRCIRFWNTSNGHQLNSVD---TGS---QVCNLAWSK--NVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 340 l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~~~~~~~~~~---~~~---~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~ 409 (475)
++|+|+|+.|+++.. +..+..|++||+.+++....+. ... .+..+.|+| +|+++++ +..++.+.||++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~--~~~~g~~~l~~~ 340 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ--SRRDGWNHLYLY 340 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE--ECTTSSCEEEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE--EccCCccEEEEE
Confidence 999999997777542 0012489999999994433331 222 246789999 9997776 667888888887
Q ss_pred C-CCceEEEecCCCcceEE-EEECCCCCEEEEEeCC-C----CEEEEecCCCC
Q 011916 410 P-SMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGD-E----TLRFWNVFPSL 455 (475)
Q Consensus 410 ~-~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~D-g----~I~iW~~~~~~ 455 (475)
. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|..|++.++.
T Consensus 341 ~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 341 DTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 6 67778888888888877 7999999988766554 3 56666665554
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=6.9e-22 Score=213.43 Aligned_cols=275 Identities=12% Similarity=0.130 Sum_probs=204.7
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..++|||+ ..|+.+.++.|++||+.++ +...+. .+...+.+++|+|||++||+++. +.|.+||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~--~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLT--HGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCC--CSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcc--cCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 3667999998 6677777799999999998 654443 56678999999999999999885 699999999988776
Q ss_pred EecCCCCc----------------eEEEEe--CCCEEEEEeCCC---------------------------------cEE
Q 011916 246 TFGGHQTR----------------AGVLAW--NSRILSSGSRDR---------------------------------NIL 274 (475)
Q Consensus 246 ~~~~h~~~----------------v~~l~~--~~~~l~sgs~dg---------------------------------~I~ 274 (475)
....+... +..++| +++.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 367888 578888887665 788
Q ss_pred EEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEecccc----ceeEEEEC
Q 011916 275 QHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHSQQPTLRLTEHTA----AVKAIAWS 343 (475)
Q Consensus 275 iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~~~~~~~~~~h~~----~v~~l~~s 343 (475)
+||+...+....... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 899874034333332 47788999999 99999997754 56899999999987776665543 45689999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEE-EEcCCCCeEEEEEecCCC--eEEEEECCC-CceEEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNL-AWSKNVNELVSTHGYSQN--QIMVWKYPS-MAKVST 417 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l-~~s~~~~~l~~~~g~~dg--~I~iwd~~~-~~~~~~ 417 (475)
|+|+ ++++++ .|+.++||.+. ++. ...+ .+...+..+ .|+|+++.|+++ +..++ .++||++.. +.....
T Consensus 346 pdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 346 DDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp TTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEETTCCCCEE
T ss_pred CCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEcCCCCeee
Confidence 9999 666654 68877777654 344 4444 345667777 599999988765 44555 889998864 555666
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPS 454 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~ 454 (475)
+.. ...+..++|+|||++|+....+ ..+.+|+...+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 665 6678899999999998876543 46888887543
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=8e-22 Score=221.14 Aligned_cols=278 Identities=9% Similarity=0.037 Sum_probs=207.1
Q ss_pred CCceeEEecCCC-CEEEEE-cC------CeEEEEECCCCcEEEEeeCCCCCcE-------EEEEEcCCCCEEEEEeCC--
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LG------TCVYLWTASNSKVTRLCDLGPGDSV-------CSVQWTREGSYISVGTNL-- 230 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~------~~V~lw~~~~~~~~~~~~~~~~~~V-------~~v~~spdg~~la~g~~d-- 230 (475)
...+.+++|||+ ..|+.+ .+ ..|++|++.+++...+. .|...+ .+++|+|||+++++++.+
T Consensus 52 ~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 52 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC--CCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcc--cCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 456888999997 445543 22 37999999998854443 567777 899999999977777644
Q ss_pred ----CeEEEEECCCCeee-------------------------------------------------EEecCCCCceEEE
Q 011916 231 ----GQVQVWDGTQCKRV-------------------------------------------------RTFGGHQTRAGVL 257 (475)
Q Consensus 231 ----g~v~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~l 257 (475)
..|.+|++.+++.. ..+.+|...+.++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 35778887655432 1223566677788
Q ss_pred EeCCC-EEEEEeCCCcEEEEECCCCCccEEEecC----------------------------------------------
Q 011916 258 AWNSR-ILSSGSRDRNILQHDLRVSSDYICKLAG---------------------------------------------- 290 (475)
Q Consensus 258 ~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~---------------------------------------------- 290 (475)
.|+++ ++++++.|+.+.+|.+...+.....+..
T Consensus 210 ~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~ 289 (1045)
T 1k32_A 210 VIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPE 289 (1045)
T ss_dssp EEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCC
T ss_pred EEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccc
Confidence 88654 5556677888888876532222222211
Q ss_pred ----ccCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEecccc-ceeEEEECCCCCcEEEEecCCCCCeEE-E
Q 011916 291 ----HKSEVCGLKWS-HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA-AVKAIAWSPHQSSLLASGGGTADRCIR-F 363 (475)
Q Consensus 291 ----h~~~V~~l~~s-~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~ll~sg~Gs~d~~I~-i 363 (475)
|...+.+++|+ |||++|++++ ++.|++|++..+... .+..|.. .+..++|+ +|+.+++++ .+..+. +
T Consensus 290 ~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s---~~~~l~~~ 363 (1045)
T 1k32_A 290 DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT---REGDFLGI 363 (1045)
T ss_dssp SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE---TTEEEEEE
T ss_pred cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE---CCCceEEE
Confidence 11246778888 8888888777 678888888776543 4556666 89999999 998777654 478888 9
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
||+.+++......+...+..++|+|+|+.|++ +..++.|++||+.+++....+.+|...+..++|+|||++|++++.+
T Consensus 364 ~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 364 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp EETTTCCEEECCCCCCSEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EECCCCCceEecCCccceeeeEECCCCCEEEE--ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 99988876555555678999999999999998 6788999999999998888887899999999999999999988765
Q ss_pred C----------CEEEEecCCCC
Q 011916 444 E----------TLRFWNVFPSL 455 (475)
Q Consensus 444 g----------~I~iW~~~~~~ 455 (475)
+ .|++||+..+.
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccccCCCCCeEEEEECCCCc
Confidence 4 89999998765
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.3e-21 Score=187.53 Aligned_cols=244 Identities=9% Similarity=0.073 Sum_probs=193.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEEC
Q 011916 209 GDSVCSVQWTREGSYISVGTN-------LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDL 278 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~-------dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~ 278 (475)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++| +++ +++++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 468999999999988887643 33556666 566 4555566899999999
Q ss_pred CCCCccEEEecCccCC---------EEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 279 RVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~---------V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
. .++.+..+..+... +.++.|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++
T Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 K-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp T-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred C-CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 8 45555555544322 78999999999887776 478999999999998888775666789999999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
.++++. .++.|.+||+.+++.+..+.. ...+..++|+|+++.++++ ...++.|.+||..+++.+..+..+.
T Consensus 198 ~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 198 RLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEEEEcCC
Confidence 877764 589999999999998887754 3457889999999988775 4456999999999999888877544
Q ss_pred cceEEEEECCCCCEEEEEe-CCCCEEEEecCCCCCCCCc
Q 011916 423 LRVLYLATSPDGQTIVTGA-GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~~~~~~~~ 460 (475)
. ..++|+|||++++.++ .++.|.+||+.+++....+
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 2 5799999999666555 6899999999877655443
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=5.1e-21 Score=185.86 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=181.8
Q ss_pred ceeEEecCCC-C-EEEEEcC-CeEEEEECC--CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECC---C
Q 011916 170 YLNLVDWSSQ-N-VLAVGLG-TCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGT---Q 240 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~~-~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~---~ 240 (475)
.+..++|+++ + +++++.+ +.|.+|++. +++...+..+.....+.+++|+|+|++|++++. ++.|.+||+. .
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 3566899987 4 5555555 899999998 666554433333347889999999998877765 8899999994 3
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEE----Eec-CccCCEEEEEEcCCCCEEEEEe-
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYIC----KLA-GHKSEVCGLKWSHDDRELASGG- 311 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~----~~~-~h~~~V~~l~~s~~~~~lasg~- 311 (475)
.+.+..+..+ ..+.+++|+ ++.|++++ .++.|.+||+...+.... ... .....+.+++|+|++++|++++
T Consensus 119 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 119 VGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp EEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 4455555443 357788885 56777776 899999999985343321 222 2345788999999999776555
Q ss_pred CCCcEEEEECCC--Cce--eEEEec---c---ccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--C--CceeeeecC
Q 011916 312 NDNQLLVWNQHS--QQP--TLRLTE---H---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--N--GHQLNSVDT 377 (475)
Q Consensus 312 ~Dg~I~iwd~~~--~~~--~~~~~~---h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~--~~~~~~~~~ 377 (475)
.++.|.+||+.. ++. ...+.. . ...+..++|+|++++|++++. .++.|.+||+. + .+.+..+..
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecC
Confidence 789999999953 432 222221 1 235668999999998887765 79999999998 3 344555555
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCc--eEEEecCCCcceEEEEECCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMA--KVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~--~~~~l~~h~~~V~~l~~spdg 434 (475)
...+..++|+|+++.|+++ +..++.|.+|++ .+++ .+..+... ....+++|.++.
T Consensus 276 ~~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp SSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CCccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 5568999999999998884 346899999954 4553 34444432 345667776654
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.8e-20 Score=181.82 Aligned_cols=234 Identities=12% Similarity=0.110 Sum_probs=180.3
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCcc-EEEecC
Q 011916 216 QWTREGSY-ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDY-ICKLAG 290 (475)
Q Consensus 216 ~~spdg~~-la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~~ 290 (475)
.|.+++++ ++++..++.|.+||+.+++.+..+..+...+ .++|+ ++++++++. ++.|.+||+.. +.. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc
Confidence 45565554 6677788999999999999988887666666 88884 565655554 89999999984 444 566666
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEEC
Q 011916 291 HKSEVCGLKWSHDDRELASGGNDN---QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNT 366 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~Dg---~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~ 366 (475)
+.....+++|+|+|++|+++..++ .|.+||+.+++.+..+.. .....+++|+|+|+++++++. .++. |.+|++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDR--SSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEec--CCCceEEEEEE
Confidence 666665599999999999655553 899999999988777664 445689999999998888765 5677 999998
Q ss_pred CCCcee-----eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---EEEecCCCcceEEEEECCCCCEEE
Q 011916 367 SNGHQL-----NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK---VSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 367 ~~~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
.....+ ..+..+..+..++|+|+|++++++ +..++.|.+||+.+++. +..+..+ ..+..++|+|||++|+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEE
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEE
Confidence 764432 233456678999999999987764 55789999999999887 7777644 5678999999999776
Q ss_pred EEe-CCCCEEEEecCCCCC
Q 011916 439 TGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 439 s~s-~Dg~I~iW~~~~~~~ 456 (475)
.++ .++.|.+||+.++..
T Consensus 237 v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EECSSEEEEEEEETTTTEE
T ss_pred EEEcCCCEEEEEECCCCce
Confidence 654 578899999987665
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=4e-21 Score=181.96 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=173.5
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHD 303 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~ 303 (475)
++.++.|++||+.+++... +..|...|.+++|+ +++|++++ ++.|.+||+...+........+ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 4568999999999888764 45588899999995 67888876 7899999998414555555455 367899999999
Q ss_pred CCEEEEEeC--CC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCceeeeecC
Q 011916 304 DRELASGGN--DN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT--SNGHQLNSVDT 377 (475)
Q Consensus 304 ~~~lasg~~--Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~--~~~~~~~~~~~ 377 (475)
+++|++++. ++ .|.+|+..++. ...+..+ ..+..++|+|+++.+++++. .++.+++|++ .+++......+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEECCCS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEcccC
Confidence 999999983 33 45555555554 3444433 34889999999998886665 7898888884 55655555566
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEecCCCcceEEEEECCCCCEEEEEeCC-----------CC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-----------ET 445 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----------g~ 445 (475)
...+.++.|+|+++.|+++ +..++.+.+|++. ....+..+..|...+..++|+|+|++|++++.+ +.
T Consensus 172 ~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 7789999999999988874 4457889999886 566777888888899999999999999988776 56
Q ss_pred EEEEecCCCCCCC
Q 011916 446 LRFWNVFPSLKAP 458 (475)
Q Consensus 446 I~iW~~~~~~~~~ 458 (475)
|++||+..+....
T Consensus 251 l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 251 VQLMDMDGGNVET 263 (297)
T ss_dssp EEEEETTSCSCEE
T ss_pred EEEEecCCCCcee
Confidence 9999998876543
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=8.9e-21 Score=212.64 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=212.6
Q ss_pred ceeEEecC-CC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCeeeE
Q 011916 170 YLNLVDWS-SQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTREGSYISVGTNLGQVQ-VWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws-~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~spdg~~la~g~~dg~v~-iwd~~~~~~~~ 245 (475)
.+..++|+ |+ ..++.+.++.|++|+..+++...+. .+.. .+.+++|+ ||+.|++++.++.+. +|++.+++...
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~ 373 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK 373 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence 57889999 87 5566666999999999988866543 5566 89999999 999999999988898 99998776544
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC---------
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN--------- 314 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg--------- 314 (475)
+.+|...+..++| +++.|++++.++.|++||+. .+........|...+.+++|+|||++|++++.++
T Consensus 374 -l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~-tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 374 -FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp -CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred -ecCCccceeeeEECCCCCEEEEECCCCeEEEEECC-CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 4478889999999 47899999999999999998 4555566668999999999999999999887654
Q ss_pred -cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----------------------
Q 011916 315 -QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---------------------- 371 (475)
Q Consensus 315 -~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---------------------- 371 (475)
.|++||+.+++ +..+..|...+..++|+|+|+.|++.+ .++...+|+......
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999999887 667778888899999999999887754 344445554322111
Q ss_pred ---------------------eeeec-CCCCeeEEEEcCCCCeEEEE-----------EecCCCeEEEEECCCCceEEEe
Q 011916 372 ---------------------LNSVD-TGSQVCNLAWSKNVNELVST-----------HGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 372 ---------------------~~~~~-~~~~v~~l~~s~~~~~l~~~-----------~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+..+. +.+.+..+.++|++..+++. .......|.+||+.+++... +
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l 606 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V 606 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e
Confidence 11111 33568899999999877741 12235578999998877533 3
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
. ..+..++|||||++|++++.| .|++||+.++.
T Consensus 607 ~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 K---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred e---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2 568899999999999999877 89999998776
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=3.6e-20 Score=180.45 Aligned_cols=276 Identities=10% Similarity=0.033 Sum_probs=191.3
Q ss_pred EecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecCC
Q 011916 174 VDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 174 l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
++++++ . +++.+.++.|++||..+++....+..+....+..++|+|+|++++++ ..++.|.+||+.+++.+..+..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 344554 3 45556789999999999998888765433367899999999876554 56899999999999988777643
Q ss_pred C------CceEEEEe--CCCEEEEEeCC------------CcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEE
Q 011916 251 Q------TRAGVLAW--NSRILSSGSRD------------RNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 251 ~------~~v~~l~~--~~~~l~sgs~d------------g~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~la 308 (475)
. ..+..++| ++++|++++.+ +.|.+||+.... ..+.... +...+.+++|+|+|+ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 23667778 56788888865 899999997421 2223333 334688999999999 66
Q ss_pred EEeCCCcEEEEECCCCceeEEEecccc------------------------ceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLTEHTA------------------------AVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~~h~~------------------------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+++. .|++||+.+++.+..+..+.. ....+++++++........ ....+..+
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~ 238 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD--LLYGYLSV 238 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--EEEEEEEE
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--cceeEEEE
Confidence 6544 499999999987776653320 3445667665532211100 11122224
Q ss_pred ECCCCceeee--ecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 365 NTSNGHQLNS--VDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 365 d~~~~~~~~~--~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
|..+++.... -.....+..++|+| +++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--V--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEE--E--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec
Confidence 5544432111 12456788999999 9999988 4 789999999999888777643 3578999999999999888
Q ss_pred CCCCEEEEecCCCCCCCCc
Q 011916 442 GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~ 460 (475)
.++.|++||+.+.+....+
T Consensus 314 ~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp BSSEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeccccceeeee
Confidence 8999999999887655543
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=8.5e-21 Score=204.22 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=191.8
Q ss_pred ceeEEecCCC-CEEEEEc-C---------CeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 170 YLNLVDWSSQ-NVLAVGL-G---------TCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~---------~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
.+..++|||+ +.|+.+. + +.|++||+.+++...+... .+...+..++|+|||++||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 5788999998 5455443 2 7899999999987444322 23445889999999999999987 7999999
Q ss_pred CCCCeeeEEecCCCCce------------------EEEEe--CCCEEEEEeCCC--------------------------
Q 011916 238 GTQCKRVRTFGGHQTRA------------------GVLAW--NSRILSSGSRDR-------------------------- 271 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v------------------~~l~~--~~~~l~sgs~dg-------------------------- 271 (475)
+.+++.......+...+ .+++| +++.|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99988776665544333 78889 468888887543
Q ss_pred --------cEEEEECCCCCccEEEecCc------cCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEec-
Q 011916 272 --------NILQHDLRVSSDYICKLAGH------KSEVCGLKWSHDDRELASGGN----DNQLLVWNQHSQQPTLRLTE- 332 (475)
Q Consensus 272 --------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~~~~~~~~- 332 (475)
.|.+||+.. +.....+..+ ...+..++|+|||++|++... +..|++||+.+++....+..
T Consensus 221 ~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp TTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 799999974 4433445443 567899999999998877653 35799999999887665544
Q ss_pred cccce----eEEEECCCCCcEEEE-ecCCCCC------eEEEEE-CCCCc--eeeeec-CCCCeeE-EEEcCCCCeEEEE
Q 011916 333 HTAAV----KAIAWSPHQSSLLAS-GGGTADR------CIRFWN-TSNGH--QLNSVD-TGSQVCN-LAWSKNVNELVST 396 (475)
Q Consensus 333 h~~~v----~~l~~sp~~~~ll~s-g~Gs~d~------~I~iwd-~~~~~--~~~~~~-~~~~v~~-l~~s~~~~~l~~~ 396 (475)
+...+ ..++|+|+|+.|++. +. .++ .|.+|| ..++. +...+. ....+.. ++|+|+|+.|+.+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 377 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL 377 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence 33444 388999999988875 33 556 677788 44444 144443 3344554 6999999999874
Q ss_pred EecCC--CeEEEEECCCCc--eEEEecC---CCcceEEEEECCCCCEEEEEeC
Q 011916 397 HGYSQ--NQIMVWKYPSMA--KVSTLTG---HSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 397 ~g~~d--g~I~iwd~~~~~--~~~~l~~---h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+..+ +.+.||++.... ....+.. |...+..++|+|||++|+....
T Consensus 378 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 378 -STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp -ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred -EcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 3344 788999886432 3344543 6777899999999998887543
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=209.47 Aligned_cols=272 Identities=8% Similarity=0.103 Sum_probs=197.9
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---SVCSVQWTREGSYISVGTN---------LGQVQVWDGT 239 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---~V~~v~~spdg~~la~g~~---------dg~v~iwd~~ 239 (475)
.+.|+++ .+++.+.++.|++||+.+++...+.. .+.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 4789987 56666678999999999999877764 2222 3889999999999999876 7899999999
Q ss_pred CCeee--EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCE-----------------EE
Q 011916 240 QCKRV--RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEV-----------------CG 297 (475)
Q Consensus 240 ~~~~~--~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V-----------------~~ 297 (475)
+++.+ ..+ ...+..++| +|+.|+.+. ++.|++||+... ..... ..++...| .+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-PPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCC-CcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 98773 222 245778888 568888875 789999999743 33322 22333323 48
Q ss_pred EEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EE------Eecccc
Q 011916 298 LKWSHDDRELASGGNDN----------------------------------QLLVWNQHSQQPT--LR------LTEHTA 335 (475)
Q Consensus 298 l~~s~~~~~lasg~~Dg----------------------------------~I~iwd~~~~~~~--~~------~~~h~~ 335 (475)
+.|||||++||+++.|. .|++||+.+++.. .. +..|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999987652 7889999987653 12 235778
Q ss_pred ceeEEEECCCCCcEEEEec--CCCCCeEEEEE----CCCCceeeee-----cCCCCee-----EEEEcCCCCeEEEEEec
Q 011916 336 AVKAIAWSPHQSSLLASGG--GTADRCIRFWN----TSNGHQLNSV-----DTGSQVC-----NLAWSKNVNELVSTHGY 399 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~s~~~~~l~~~~g~ 399 (475)
.+..++|+||++ ++++.. +.....|.+|| +.++++...+ .+...+. .+.|+|+|+.++.....
T Consensus 254 ~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 899999999976 555432 11224689999 8887765554 2344555 78999999987764344
Q ss_pred CCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC-----CCEEEEecCC
Q 011916 400 SQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-----ETLRFWNVFP 453 (475)
Q Consensus 400 ~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iW~~~~ 453 (475)
.+| .|++||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 455 67778887766 55677677778888777 88877776655 8899998864
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=3e-20 Score=184.39 Aligned_cols=280 Identities=12% Similarity=0.092 Sum_probs=196.8
Q ss_pred CceeEEecCCC-C-EEEEEc-CC--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQ-N-VLAVGL-GT--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~-~-~la~~~-~~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.|+...+|+|+ . ++.++. ++ .|++||+.+++...+.. ++...+..+.|+|||+.|+++..++.|++||+.+++.
T Consensus 36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 44555789997 3 555555 45 59999999998877764 4444555678999999999999999999999999988
Q ss_pred eEEecCCCCceEEEEe----CCCEEEEE----------------------eCCCcEEEEECCCCCccEEEecCccCCEEE
Q 011916 244 VRTFGGHQTRAGVLAW----NSRILSSG----------------------SRDRNILQHDLRVSSDYICKLAGHKSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~----~~~~l~sg----------------------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 297 (475)
...+..+...+....| ++.+++.. ..+..|.+||+.. + ....+..+...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g-~~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT-G-ESTVILQENQWLGH 192 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-C-CEEEEEEESSCEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-C-ceEEeecCCccccc
Confidence 7777767666654444 45666532 2446799999874 3 34455567778999
Q ss_pred EEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEeccc--cceeEEEECCCCCcEEEEecC--CCCCeEEEEEC
Q 011916 298 LKWSH-DDRELASGGND------NQLLVWNQHSQQPTLRLTEHT--AAVKAIAWSPHQSSLLASGGG--TADRCIRFWNT 366 (475)
Q Consensus 298 l~~s~-~~~~lasg~~D------g~I~iwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~ll~sg~G--s~d~~I~iwd~ 366 (475)
+.|+| ||+.|+.+..+ ..|.++|...+.. ..+..+. ..+..++|+|+|+.|+..... ..+..|++||+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 99999 99999887753 3788888876544 3444444 357889999999988665431 11234999999
Q ss_pred CCCceeeeecCCC------CeeEEEEcCCCCeEEEEEe-------cCCCeEEEEECCCCceEEEecCCCc----------
Q 011916 367 SNGHQLNSVDTGS------QVCNLAWSKNVNELVSTHG-------YSQNQIMVWKYPSMAKVSTLTGHSL---------- 423 (475)
Q Consensus 367 ~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~~g-------~~dg~I~iwd~~~~~~~~~l~~h~~---------- 423 (475)
.+++......... ....+.|+|+|+.|+.+.. ..+..|++||+.+++. ..+..|..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSS
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccc
Confidence 9987543322211 1223479999999886421 4567899999988764 44555555
Q ss_pred -ceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 424 -RVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 424 -~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
.+..++|+|||+.|+.++ .+|...||.+.-
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 578899999999888765 478888887654
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.1e-20 Score=198.42 Aligned_cols=266 Identities=11% Similarity=0.011 Sum_probs=189.1
Q ss_pred CceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--
Q 011916 169 FYLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQ-- 240 (475)
Q Consensus 169 ~~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~-- 240 (475)
..+..+.++++ + ++.++. ++.+.||++.+++..++.. .+...+.+++|+|| ++++++.. +....||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 45788899887 4 444555 8999999997777665542 33368999999999 77777764 45455654432
Q ss_pred -CeeeEEecCCCCceEEEEeCCC-EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC----C
Q 011916 241 -CKRVRTFGGHQTRAGVLAWNSR-ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND----N 314 (475)
Q Consensus 241 -~~~~~~~~~h~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g 314 (475)
+........+...+.+++++++ .+++.+.++.+.+||+. .+...... .+.. .+++|+|||++||+++.| +
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE-EESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee-cCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 3322222233334556667774 44455555566699997 34433333 3333 789999999999988877 7
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeee-cCCCCeeEEE------
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSV-DTGSQVCNLA------ 385 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~-~~~~~v~~l~------ 385 (475)
.|++||+.+++.. .+..|...+..++|+|||+.|+ ++. .++ .|++||+.+++.. .+ .+...+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 8999999988754 6778889999999999999877 433 577 8999999999887 43 3444566666
Q ss_pred --EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC---EEEEecCC
Q 011916 386 --WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET---LRFWNVFP 453 (475)
Q Consensus 386 --~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iW~~~~ 453 (475)
|+|+|..+++ +..++.+++|++ ++.+. .+.+.|.+++|+ ||+++++++.+.+ |.+|+...
T Consensus 251 ~~~spdg~~~~~--~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 251 LGYLPDGRLAVV--ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEECTTSCEEEE--EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eeEcCCCcEEEE--EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999955555 668999999999 55443 345678999999 9999998887754 66666543
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.2e-19 Score=179.29 Aligned_cols=264 Identities=9% Similarity=0.014 Sum_probs=185.1
Q ss_pred CeEEEEEC--CCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEecCC-CCceEEEEeC-
Q 011916 188 TCVYLWTA--SNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKRVRTFGGH-QTRAGVLAWN- 260 (475)
Q Consensus 188 ~~V~lw~~--~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~~~~~~~h-~~~v~~l~~~- 260 (475)
+.|++|++ .++++..+... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56887764 56766544321 334567899999999999999887 99999997 77765433211 1224456664
Q ss_pred -CCE--EEEEe-------------CCCcEEEEECCCCCccEEEec----CccCCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 011916 261 -SRI--LSSGS-------------RDRNILQHDLRVSSDYICKLA----GHKSEVCGLKWSHDDRELASGGN-DNQLLVW 319 (475)
Q Consensus 261 -~~~--l~sgs-------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iw 319 (475)
++. ++++. .++.+.+|++...+.....+. .+...+.+++|+|||++|++++. ++.|++|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 563 44543 689999999975444433332 24567999999999998887764 6799999
Q ss_pred ECC-CCcee--EEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CCceee---ee---cCC----C---
Q 011916 320 NQH-SQQPT--LRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NGHQLN---SV---DTG----S--- 379 (475)
Q Consensus 320 d~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~~~~~---~~---~~~----~--- 379 (475)
|+. +++.. ..+. .|...+..++|+|+|++++++.. .++.|.+|++. +++... .+ ..+ .
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 250 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence 998 66543 2333 23567899999999998877754 67899999765 565431 22 111 1
Q ss_pred ----CeeEEE-EcCCCCeEEEEEecCC----CeEEEEECC-CCceEE---EecCCCcceEEEEECC---CCCEEEEEeCC
Q 011916 380 ----QVCNLA-WSKNVNELVSTHGYSQ----NQIMVWKYP-SMAKVS---TLTGHSLRVLYLATSP---DGQTIVTGAGD 443 (475)
Q Consensus 380 ----~v~~l~-~s~~~~~l~~~~g~~d----g~I~iwd~~-~~~~~~---~l~~h~~~V~~l~~sp---dg~~l~s~s~D 443 (475)
.+..++ |+|+|++|+++....+ +.|.+|++. +++... .+..+...+..++|+| ||++|++++.+
T Consensus 251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 478899 9999999987533333 289999996 555433 2334555677899999 89999999875
Q ss_pred -CCEEEEecCCC
Q 011916 444 -ETLRFWNVFPS 454 (475)
Q Consensus 444 -g~I~iW~~~~~ 454 (475)
+.|.+|++...
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 89999999876
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=1.5e-20 Score=197.55 Aligned_cols=234 Identities=10% Similarity=-0.010 Sum_probs=175.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCC-CceEEEEeCC-CEEEEEeC---CCcEEEEECCC--
Q 011916 209 GDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAWNS-RILSSGSR---DRNILQHDLRV-- 280 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~~~-~~l~sgs~---dg~I~iwd~~~-- 280 (475)
...|.+++|+|||++||+++. ||++.||++.+++..+ +..|. ..+..++|++ +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 357999999999999999887 9999999997666544 44444 6899999975 45566654 45567766654
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC-CCC
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG-TAD 358 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G-s~d 358 (475)
.+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++...... +.. .+++|+|||+.|++++.. ...
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 33333 333322 3446688888753 3334444556699999887654443 333 889999999987765420 011
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEE-------
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLA------- 429 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~------- 429 (475)
+.|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+.+|...+..++
T Consensus 175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 7899999999987766567778899999999999995 66677 8999999998887 7788888777777
Q ss_pred -ECCCCCEEEEEeCCCCEEEEec
Q 011916 430 -TSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 430 -~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|+|||.++++++.|+++++|++
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999999
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.6e-19 Score=174.79 Aligned_cols=240 Identities=10% Similarity=0.084 Sum_probs=184.6
Q ss_pred eeEEecCCCC--EEEEEc-CCeEEEEECCCCcEEEEeeCCCC----CcEEEEEEcCCCCEEEEEe------------CCC
Q 011916 171 LNLVDWSSQN--VLAVGL-GTCVYLWTASNSKVTRLCDLGPG----DSVCSVQWTREGSYISVGT------------NLG 231 (475)
Q Consensus 171 v~~l~ws~~~--~la~~~-~~~V~lw~~~~~~~~~~~~~~~~----~~V~~v~~spdg~~la~g~------------~dg 231 (475)
+..++|+++. +++++. ++.|++||+.+++....+..++. ..+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 4568899873 444444 67999999999998877765431 2567899999999999886 579
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
.|.+||+.+++.+..+.. ...+.+++| ++++|+++ ++.|.+||+. .++....+..+.. ...+.|+|++..|+.
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~-~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPE-AGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETT-TTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECC-CCcEeeeeecccc-CCCceeCCCccEEee
Confidence 999999999988887764 345677778 46777777 6899999998 4555555554331 112378999887765
Q ss_pred EeCCC------------------------cEEEEECCCCcee-EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 310 GGNDN------------------------QLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 310 g~~Dg------------------------~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.+.++ .|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~ 265 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESF 265 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEE
Confidence 54332 4689999988764 2334466678899999999977764 6899999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
|+.+++.+..+..+..+.+++|+|++++|++ +..++.|.+||+.+++.+..+..+.
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9999999988887888999999999999988 5668999999999999888886553
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.7e-18 Score=169.34 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=169.6
Q ss_pred eeEEecCCCC-EEEEEc---CCeEEEEECCCCcEEEEee-CCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-C--
Q 011916 171 LNLVDWSSQN-VLAVGL---GTCVYLWTASNSKVTRLCD-LGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ-C-- 241 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~---~~~V~lw~~~~~~~~~~~~-~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~-~-- 241 (475)
...++|+|+. +++++. ++.|++|++.+++...+.. ..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 3458899874 666655 4799999998877544433 13566788999999999998888 679999999863 2
Q ss_pred eeeEEecC---------CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE--EEecC-ccCCEEEEEEcCCCCEE
Q 011916 242 KRVRTFGG---------HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI--CKLAG-HKSEVCGLKWSHDDREL 307 (475)
Q Consensus 242 ~~~~~~~~---------h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~-h~~~V~~l~~s~~~~~l 307 (475)
+.+..+.. +...+.+++|+ ++++++...++.|.+|++...+... ..+.. ....+..++|+|||++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 33333322 12347788884 5766666778999999998434322 12222 23367889999999966
Q ss_pred EE-EeCCCcEEEEECCC--Cce--eEEEeccc------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-C--ceee
Q 011916 308 AS-GGNDNQLLVWNQHS--QQP--TLRLTEHT------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-G--HQLN 373 (475)
Q Consensus 308 as-g~~Dg~I~iwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~--~~~~ 373 (475)
++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++.. .++.|.+|++.. + +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeE
Confidence 66 45678999999874 442 22332222 45889999999998877765 689999999873 2 3444
Q ss_pred eecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEE--CCCCceE
Q 011916 374 SVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWK--YPSMAKV 415 (475)
Q Consensus 374 ~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd--~~~~~~~ 415 (475)
.+.. +..+..++|+|+|++|+++ +..++.|.+|+ ..+++..
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 4443 5568999999999998884 44568999994 4555543
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.2e-19 Score=183.70 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=175.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeEE-----ecCCCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----------KRVRT-----FGGHQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----------~~~~~-----~~~h~~ 252 (475)
+.|++|+.... .+...+..+++++++.++++++.+| ++||+.... ..+.. ...+..
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 56777765311 1234678999999999999999987 888874211 01111 113566
Q ss_pred ceEEEEeC--CCEEE----EEeCCCcEEEEECCCC-----C--c---cEEEecCccCCEEEEEEcCC-CCEEEEEeCCCc
Q 011916 253 RAGVLAWN--SRILS----SGSRDRNILQHDLRVS-----S--D---YICKLAGHKSEVCGLKWSHD-DRELASGGNDNQ 315 (475)
Q Consensus 253 ~v~~l~~~--~~~l~----sgs~dg~I~iwd~~~~-----~--~---~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~ 315 (475)
.|.+++|+ +++|+ +|+.|+.|++||++.. . . ....+.+|...|.+++|+|+ +++|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 79999995 67888 7889999999998632 1 1 24556779999999999997 889999999999
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEc
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWS 387 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s 387 (475)
|++||++++..+.....|...|.+++|+|+|++|++.+ .|+.|++||++ ++....+.. ...+.++.|+
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 99999999877777778999999999999999666533 79999999998 555554421 1278999999
Q ss_pred CCCCeEEEEEecCCC------eEEEEECCCCc-----eEEEec-------CCCcceEEEEECCCCCEEEEEeC-CCCEEE
Q 011916 388 KNVNELVSTHGYSQN------QIMVWKYPSMA-----KVSTLT-------GHSLRVLYLATSPDGQTIVTGAG-DETLRF 448 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg------~I~iwd~~~~~-----~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~-Dg~I~i 448 (475)
+++.++++.. ..+| .+++|++.... ....+. +...+-..+.+-+|.+++++++. .+.|.+
T Consensus 250 ~~~~~l~~~~-~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 250 GTYVFAIVYA-AADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp ETTEEEEEEE-ETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred cCceEEEEEc-cCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 9887776643 3343 38999997642 112221 11222233444466666665544 444555
Q ss_pred Eec
Q 011916 449 WNV 451 (475)
Q Consensus 449 W~~ 451 (475)
...
T Consensus 329 l~~ 331 (434)
T 2oit_A 329 LAR 331 (434)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.4e-17 Score=163.85 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=174.8
Q ss_pred eeEEecCCC-C-EEEEEcC----CeEEEEECCC--CcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 011916 171 LNLVDWSSQ-N-VLAVGLG----TCVYLWTASN--SKVTRLCDL-GPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ 240 (475)
Q Consensus 171 v~~l~ws~~-~-~la~~~~----~~V~lw~~~~--~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~ 240 (475)
...++|+|+ + +++++.+ +.|.+|++.. ++...+... .+......+++ ++++|+++. .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 445889987 4 4444443 7999998765 555444332 34567788888 888887776 578999999875
Q ss_pred CeeeEEe------cC--------CCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCCCc------c------EEEecCc
Q 011916 241 CKRVRTF------GG--------HQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVSSD------Y------ICKLAGH 291 (475)
Q Consensus 241 ~~~~~~~------~~--------h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~------~------~~~~~~h 291 (475)
...+..+ .+ +...+.+++|+ +++|+++ ..++.|.+|++..... . ......+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 4332211 11 12345778884 6655554 4589999999875442 2 1223344
Q ss_pred cCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEEEec---cccceeEEEECCCCCcEEEEecCCC-CCeEEEE
Q 011916 292 KSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQP--TLRLTE---HTAAVKAIAWSPHQSSLLASGGGTA-DRCIRFW 364 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~--~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~-d~~I~iw 364 (475)
...+..++|+|||++|++++ .++.|.+||+.+++. +..+.. +......++|+|+|++|+++.. . ++.|.+|
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v~ 287 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAIF 287 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEEE
Confidence 56688999999999888777 689999999987654 222322 3345679999999998888764 4 6899999
Q ss_pred ECC--CCc--eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEec-CCCcceEEEEEC
Q 011916 365 NTS--NGH--QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKVSTLT-GHSLRVLYLATS 431 (475)
Q Consensus 365 d~~--~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~s 431 (475)
++. +++ .+..+..+..+..++|+|+|++|+++ +..++.|.+|++ .+++...... .+...+.|+.|.
T Consensus 288 ~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 985 455 44445556678899999999998885 446789999654 4565543332 244568888885
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=2.2e-17 Score=160.70 Aligned_cols=242 Identities=13% Similarity=0.144 Sum_probs=188.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeeeEEec-CCCCceEEEEeC--C
Q 011916 209 GDSVCSVQWTREGSYISVGTNL------------------------GQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN--S 261 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~d------------------------g~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~ 261 (475)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988888777 479999999898877665 445678888885 6
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEe---------cCccCCEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKL---------AGHKSEVCGLKWSH-DDRELASGG-NDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~s~-~~~~lasg~-~Dg~I~iwd~~~~~~~~~~ 330 (475)
+++++...++.|.+||.......+..+ ..+.....+|+++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 788888889999999986332244444 34455789999999 788888876 689999999 556666666
Q ss_pred ecc----------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcC------CCC
Q 011916 331 TEH----------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSK------NVN 391 (475)
Q Consensus 331 ~~h----------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~------~~~ 391 (475)
... -.....|+++|++..++++.. .++.|++||..+++.+..+. ....+..++|+| +++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 422 234789999999666877765 78999999999899888874 446788999999 332
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+++ ...++.|++|++.+++.+..+. ++...+..|+++|+|.++++...++.|++|++....
T Consensus 260 ~~v~--~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 260 PYFG--DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCTT--CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEec--cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 2222 3345689999999999988874 577779999999999888888889999999987543
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=8.6e-19 Score=173.92 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=187.0
Q ss_pred ceeEEecCCC-CEEEEE-cC---CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSSQ-NVLAVG-LG---TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~-~~---~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
++..++|+|+ ..++.. .. ..|++|++.+++...+.. ++......+.|+|||++|+.++.++.|.+||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 4556889987 444443 32 379999999988766543 22222334789999999999999999999999988776
Q ss_pred EEecCCCCceEE---E----------------Ee--CCCEEEEE-----eCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 245 RTFGGHQTRAGV---L----------------AW--NSRILSSG-----SRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 245 ~~~~~h~~~v~~---l----------------~~--~~~~l~sg-----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
.....+...... + .| +++.++.+ ..+..|.+||+.. +.. ..+..+...+..+
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~-~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GEL-EVIHQDTAWLGHP 193 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCE-EEEEEESSCEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-CcE-EeeccCCcccccc
Confidence 665544442222 1 12 22333322 3556899999873 333 3333567789999
Q ss_pred EEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEecc--ccceeEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011916 299 KWSH-DDRELASGGND------NQLLVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTS 367 (475)
Q Consensus 299 ~~s~-~~~~lasg~~D------g~I~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~ 367 (475)
.|+| +++.|+..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|+.|++... +..++.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999 78877776643 36899998766533 33333 235788999999998777642 1112559999999
Q ss_pred CCceeeeecCCCCeeEEEEcC-CCCeEEEEEe--------------cCCCeEEEEECCCCceEEEecCCCc---------
Q 011916 368 NGHQLNSVDTGSQVCNLAWSK-NVNELVSTHG--------------YSQNQIMVWKYPSMAKVSTLTGHSL--------- 423 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g--------------~~dg~I~iwd~~~~~~~~~l~~h~~--------- 423 (475)
+++......... .. +.|+| +|+.+++... ..+..|++||+.+++.. .+..+..
T Consensus 273 ~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 273 TLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDR 349 (396)
T ss_dssp TCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBS
T ss_pred CCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccc
Confidence 887654433322 33 89999 9997776321 13478999999877643 3444443
Q ss_pred --ceEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 424 --RVLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 424 --~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
.+..++|+|||+.|+.++. ++...+|.+........
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 2567899999998887765 56777777654443333
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.4e-19 Score=190.24 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=192.2
Q ss_pred eeEEecCCC-CEEEEEc----------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQ-NVLAVGL----------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~----------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..++|||+ +.|+.+. ++.|++||+.+++......+ ...+.+++|+|||+.||++. ++.|++|++.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 678999997 5555443 48999999999876211111 25688999999999999986 6899999998
Q ss_pred CCeeeEEe-cCCCCce-----------------EEEEe--CCCEEEEEeCCC----------------------------
Q 011916 240 QCKRVRTF-GGHQTRA-----------------GVLAW--NSRILSSGSRDR---------------------------- 271 (475)
Q Consensus 240 ~~~~~~~~-~~h~~~v-----------------~~l~~--~~~~l~sgs~dg---------------------------- 271 (475)
+++..... .++...| .+++| +|+.|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433 2333222 47888 568898887552
Q ss_pred ------cEEEEECCCCCccE---E-----EecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceeEE
Q 011916 272 ------NILQHDLRVSSDYI---C-----KLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWN----QHSQQPTLR 329 (475)
Q Consensus 272 ------~I~iwd~~~~~~~~---~-----~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd----~~~~~~~~~ 329 (475)
.|.+||+.. +... . .+.+|...+..++|+||++++++.... ..|.+|| +.+++....
T Consensus 219 ~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 219 AKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 788999973 3321 1 123577889999999998777775433 2488999 777765443
Q ss_pred E----ecccccee-----EEEECCCCCcEEEE-ecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 330 L----TEHTAAVK-----AIAWSPHQSSLLAS-GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 330 ~----~~h~~~v~-----~l~~sp~~~~ll~s-g~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
+ ..|...+. .++|+|+|+.++.. ........|.+||+.+++..........+..+.++ +++.|+.+ +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~-~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS-SN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE-ES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE-Ee
Confidence 3 35666676 89999999977653 32222347888898877744333344567777777 88888775 33
Q ss_pred C----CCeEEEEECCC--Cc-eEEEecC----CCcceEEEEECCCCCEEEE-EeCC--CCEEEEecCCCCC
Q 011916 400 S----QNQIMVWKYPS--MA-KVSTLTG----HSLRVLYLATSPDGQTIVT-GAGD--ETLRFWNVFPSLK 456 (475)
Q Consensus 400 ~----dg~I~iwd~~~--~~-~~~~l~~----h~~~V~~l~~spdg~~l~s-~s~D--g~I~iW~~~~~~~ 456 (475)
. ++.+.+|.+.. +. ....+.. |...+..+.|+||+++|+. ++.+ ..+.+|++.+++.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 3 47788887653 32 2334432 6677889999999987774 4433 4688998876653
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.9e-17 Score=178.97 Aligned_cols=274 Identities=12% Similarity=0.155 Sum_probs=184.8
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-----cEEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-----SVCSVQWTREGSYISVGTNL---------GQVQVWD 237 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-----~V~~v~~spdg~~la~g~~d---------g~v~iwd 237 (475)
.+.|+++ .+++.+ ++.|++||+.+++...++. .+.. ....++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 5899998 455555 9999999999999877765 3332 22458899999999999876 5677999
Q ss_pred CCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----------------EEE
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----------------CGL 298 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l 298 (475)
+.+++.. .+..|...+...+| +|+.|+.+ .++.|.+||+...........++...+ ..+
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence 9998865 46677788999999 46888887 468999999974332211222333323 348
Q ss_pred EEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEEe------
Q 011916 299 KWSHDDRELASGGNDN------------------------------------QLLVWNQHS---QQ--PTLRLT------ 331 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg------------------------------------~I~iwd~~~---~~--~~~~~~------ 331 (475)
.|||||+.||.++.|. .|++||+.+ ++ ....+.
T Consensus 177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~ 256 (740)
T 4a5s_A 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (740)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence 9999999999875321 488899988 73 233343
Q ss_pred ccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc----eee--e---ecCCCCe-----eEEEEcCCCCeEEEE
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGH----QLN--S---VDTGSQV-----CNLAWSKNVNELVST 396 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~----~~~--~---~~~~~~v-----~~l~~s~~~~~l~~~ 396 (475)
+|...+..++|+|||+.++.... +..+..|.+||+.+++ +.. . ..+...+ ....|+|||+.++..
T Consensus 257 ~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~ 336 (740)
T 4a5s_A 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (740)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEE
Confidence 27778999999999985554422 2234579999999987 221 1 1233333 378999999988732
Q ss_pred EecCC--CeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE-EeC----CCCEEEEecC
Q 011916 397 HGYSQ--NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT-GAG----DETLRFWNVF 452 (475)
Q Consensus 397 ~g~~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-~s~----Dg~I~iW~~~ 452 (475)
....+ ..|++||..+++.. .++.....|..+.. +|++.|+. +.. .+...||.+.
T Consensus 337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 23344 46888898776544 45545555666542 34665554 443 2344555443
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=8.9e-18 Score=166.47 Aligned_cols=262 Identities=14% Similarity=0.054 Sum_probs=181.4
Q ss_pred EEECCCCcEEEEeeCCCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCeeeEEecCCCCceEEEEe--CC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCS-----VQWTREGSYISVGTN-LG--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~-----v~~spdg~~la~g~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~ 261 (475)
.++..++.....+. .+...... .+|+|||++|++++. +| .|.+||+.+++......++...+..+.| ++
T Consensus 14 ~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34666666555554 44444555 789999999999887 66 4888899999888777777666655566 57
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE--EcCCCCEEEEE----------------------eCCCcEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK--WSHDDRELASG----------------------GNDNQLL 317 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~--~s~~~~~lasg----------------------~~Dg~I~ 317 (475)
+.|+.++.++.|.+||+.. ++.......+...+.... +++++++++.. ..+..|+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 8999999999999999984 444444555555554444 48999988743 2446899
Q ss_pred EEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCC---CCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCC
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTA---DRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVN 391 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~ 391 (475)
+||+.+++.. .+..+...+..++|+| +|+.|+.+..+.. ...|.++|+.+++........ ..+..+.|+|+|+
T Consensus 172 ~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 172 RVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred EEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 9999988654 4455677889999999 9998877653211 447888998766554443333 2477889999999
Q ss_pred eEEEEEecCCC---eEEEEECCCCce--EEEecCCCcc---eEEEEECCCCCEEEEE---------eCCCCEEEEecCCC
Q 011916 392 ELVSTHGYSQN---QIMVWKYPSMAK--VSTLTGHSLR---VLYLATSPDGQTIVTG---------AGDETLRFWNVFPS 454 (475)
Q Consensus 392 ~l~~~~g~~dg---~I~iwd~~~~~~--~~~l~~h~~~---V~~l~~spdg~~l~s~---------s~Dg~I~iW~~~~~ 454 (475)
.|+.+.....+ .|++||+.+++. +..+.++... ...+.|+|||+.|+.. ..+..|++||+..+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 88765332222 399999998864 3344431111 1123799999988754 45678999999876
Q ss_pred CC
Q 011916 455 LK 456 (475)
Q Consensus 455 ~~ 456 (475)
..
T Consensus 331 ~~ 332 (388)
T 3pe7_A 331 TQ 332 (388)
T ss_dssp EE
T ss_pred ce
Confidence 54
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=6.3e-16 Score=146.74 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=175.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec------CCCCceEEEEe-C-CCEEEEEeC--CCcEEEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG------GHQTRAGVLAW-N-SRILSSGSR--DRNILQHD 277 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~------~h~~~v~~l~~-~-~~~l~sgs~--dg~I~iwd 277 (475)
+-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+..+++ + ...|+++.. ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 34678999999999988888889999999977 66666654 23457888888 3 344444443 89999999
Q ss_pred CCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEec
Q 011916 278 LRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 278 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
. .+..+..+. .+...+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.+|++++++. ++++..
T Consensus 107 ~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~ 182 (286)
T 1q7f_A 107 Q--YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN 182 (286)
T ss_dssp T--TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred C--CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEEC
Confidence 4 344454443 344678999999999988887788999999964 45555553 3445689999999988 666544
Q ss_pred CCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEecCCC--cceEEE
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHS--LRVLYL 428 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~--~~V~~l 428 (475)
.++.|++||. +++.+..+... ..+..++++++|+.+++ ...++ .|.+||. +++.+..+..+. ..+.++
T Consensus 183 --~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 183 --RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp --GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred --CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 6899999997 55666666433 56889999999987776 55565 9999995 566666665443 347899
Q ss_pred EECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++|+|+++++ +.|+.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999987776 67999999998654
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=8.2e-18 Score=181.80 Aligned_cols=246 Identities=11% Similarity=0.085 Sum_probs=174.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-----eEEEEe--CCCEEEEEeCC---------CcE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-----AGVLAW--NSRILSSGSRD---------RNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~sgs~d---------g~I 273 (475)
....++.|+|||++|+++ ||.|++||+.+++....+.+|... ...++| ++++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 899999999999988888877643 223555 67888888876 567
Q ss_pred EEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-eccccce---------------
Q 011916 274 LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TEHTAAV--------------- 337 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~h~~~v--------------- 337 (475)
.+||+.. ++ ...+..|...+...+|||||+.||.+. |+.|++||+.+++..+.. .++...+
T Consensus 95 ~~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 95 DIYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 7999983 33 344667788899999999999999985 589999999887654321 1222222
Q ss_pred --eEEEECCCCCcEEEEec-------------------------------CC--CCCeEEEEECCC---Cc---eeeeec
Q 011916 338 --KAIAWSPHQSSLLASGG-------------------------------GT--ADRCIRFWNTSN---GH---QLNSVD 376 (475)
Q Consensus 338 --~~l~~sp~~~~ll~sg~-------------------------------Gs--~d~~I~iwd~~~---~~---~~~~~~ 376 (475)
.++.|+|||+.|+.... |. ....|++||+.+ ++ ......
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 35899999998877531 00 112689999998 73 332221
Q ss_pred ------CCCCeeEEEEcCCCCeEEEEEecC--CCeEEEEECCCCc----e--EEEe--cCCCcceE-----EEEECCCCC
Q 011916 377 ------TGSQVCNLAWSKNVNELVSTHGYS--QNQIMVWKYPSMA----K--VSTL--TGHSLRVL-----YLATSPDGQ 435 (475)
Q Consensus 377 ------~~~~v~~l~~s~~~~~l~~~~g~~--dg~I~iwd~~~~~----~--~~~l--~~h~~~V~-----~l~~spdg~ 435 (475)
+...+..++|+|||+.++...... +..|.+||+.+++ + +..+ .+|...|. .++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 455688999999999766643322 3379999998876 1 1122 44665554 789999999
Q ss_pred EEE-EEeC-C--CCEEEEecCCCCCCCCc
Q 011916 436 TIV-TGAG-D--ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 436 ~l~-s~s~-D--g~I~iW~~~~~~~~~~~ 460 (475)
.|+ ..+. + ..|++|++..+...+..
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 877 6654 3 35888888876655443
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=6.3e-17 Score=172.34 Aligned_cols=278 Identities=12% Similarity=-0.017 Sum_probs=189.4
Q ss_pred CceeEEecCCCCEEEEEc----CCeEEEEEC-CCCcEEEEeeCCCCCcEE---------EEEEc--CCCCE-EEEEeC-C
Q 011916 169 FYLNLVDWSSQNVLAVGL----GTCVYLWTA-SNSKVTRLCDLGPGDSVC---------SVQWT--REGSY-ISVGTN-L 230 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~----~~~V~lw~~-~~~~~~~~~~~~~~~~V~---------~v~~s--pdg~~-la~g~~-d 230 (475)
..+..++|+++.++.+.. ++...||.. .+++...+. .+...+. ...|+ |||++ |+.+.. +
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 467778999886655544 678888984 444443333 3444555 56666 99998 777654 5
Q ss_pred CeEEEEECC--CCeeeEEecC-----CCCceEEEEe--CCCEEEEEeCC----------CcEEEEECCCCC----ccEEE
Q 011916 231 GQVQVWDGT--QCKRVRTFGG-----HQTRAGVLAW--NSRILSSGSRD----------RNILQHDLRVSS----DYICK 287 (475)
Q Consensus 231 g~v~iwd~~--~~~~~~~~~~-----h~~~v~~l~~--~~~~l~sgs~d----------g~I~iwd~~~~~----~~~~~ 287 (475)
..|.+|++. .......+.. |...+..++| +++.|++++.+ ..|.+||+.... .....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 667777765 2034455555 6778889999 57888888876 589999997421 33455
Q ss_pred ec-CccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 288 LA-GHKSEVCGLKWSHDDRELASGGND--------NQLLVWNQH-SQ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 288 ~~-~h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~-~~---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +.......|...+..++|+|||+ +++++.
T Consensus 182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~ 260 (662)
T 3azo_A 182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATD 260 (662)
T ss_dssp SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEEC
T ss_pred EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEEC
Confidence 55 666778889999999999988755 379999998 56 44334444578899999999999 666654
Q ss_pred CCCCC--eEEEEECCCCceeeeecCCCC---------eeEEEEcCCCCeEEEEEecCCCeEEEE--ECCCCceEEEecCC
Q 011916 355 GTADR--CIRFWNTSNGHQLNSVDTGSQ---------VCNLAWSKNVNELVSTHGYSQNQIMVW--KYPSMAKVSTLTGH 421 (475)
Q Consensus 355 Gs~d~--~I~iwd~~~~~~~~~~~~~~~---------v~~l~~s~~~~~l~~~~g~~dg~I~iw--d~~~~~~~~~l~~h 421 (475)
.++ .|.+||+.+++.......... +..++|+++++.+++ +.. +.+.|| |..+++ +..+..|
T Consensus 261 --~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 261 --RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp --TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred --CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEEECCCCc-EEEecCC
Confidence 566 788888877776554433221 467899999998887 555 777887 655554 6778888
Q ss_pred CcceEEE-EECCCCCEEEEEeCCCCEEEE--ecCCCC
Q 011916 422 SLRVLYL-ATSPDGQTIVTGAGDETLRFW--NVFPSL 455 (475)
Q Consensus 422 ~~~V~~l-~~spdg~~l~s~s~Dg~I~iW--~~~~~~ 455 (475)
...+..+ +++.+.-++++++.+....+| ++.++.
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888777 554443344455666544454 554544
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=5.9e-16 Score=150.97 Aligned_cols=238 Identities=10% Similarity=0.131 Sum_probs=166.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCeeeEEecCCCCceEEEEe--
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---G--QVQVWDGTQCKRVRTFGGHQTRAGVLAW-- 259 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g--~v~iwd~~~~~~~~~~~~h~~~v~~l~~-- 259 (475)
++.|++|++.+++...+ ..+..++|+|||++||.++.+ + .|.+|++.+++.......+. +..++|
T Consensus 42 ~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT
T ss_pred cceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC
Confidence 56799999999886554 457889999999999988754 3 38888988887665554433 899999
Q ss_pred CCCEEEEEeC---------------------------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 260 NSRILSSGSR---------------------------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 260 ~~~~l~sgs~---------------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
+++.|+.++. ...|.+||+. .+..+..+.. . .+..+.|+||| +++++..
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 4677777753 2578899987 3443233433 3 78899999999 7777765
Q ss_pred CC---------cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeec-C
Q 011916 313 DN---------QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT-----ADRCIRFWNTSNGHQLNSVD-T 377 (475)
Q Consensus 313 Dg---------~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~~~~~~~~~~-~ 377 (475)
++ .|+++| +++ ...+..+ ..+..+ +|+|+.|++.+... ....|.+|| +++...... +
T Consensus 190 ~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp CCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 42 355555 444 3444444 445444 99999887776311 135788898 565544443 3
Q ss_pred CCCeeE-EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCE-EEEecC
Q 011916 378 GSQVCN-LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETL-RFWNVF 452 (475)
Q Consensus 378 ~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I-~iW~~~ 452 (475)
...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+++|++ .++++++.++.. .+|.+.
T Consensus 262 ~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 456775 8999 87 5555 6678899999 876554 44445678899999999 677888777765 888876
No 170
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=4.9e-17 Score=158.19 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=159.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-CceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEec
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+ ++.+ +++..++.|.+||+. .++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEE
Confidence 45678889999999999999999999999988887543 246677774 5554 555678999999997 445554444
Q ss_pred C-c-----cCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---eEEEeccccceeEEEECCCCCc
Q 011916 290 G-H-----KSEVCGLKWSHDDRELASGGND------------NQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 290 ~-h-----~~~V~~l~~s~~~~~lasg~~D------------g~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
. + ...+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 2 2 2337889999999999998865 8999999987443 33333 344688999999999
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCC-------------------------CeeEEEEcCCCCeE---------E
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGS-------------------------QVCNLAWSKNVNEL---------V 394 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-------------------------~v~~l~~s~~~~~l---------~ 394 (475)
+++.+ +.|.+||+.+++.+..+.... ....+++++++... +
T Consensus 161 l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 161 LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 76642 339999999999887775432 23445666544221 1
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.......+.+.+|++ ..+...+..++|+| ||++|+++ ++.|.+||+.+++....
T Consensus 236 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred EEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 111223344444443 23556789999999 99999988 88999999987765443
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=2.5e-16 Score=155.35 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=186.1
Q ss_pred EEecCCC-CEEEEEc-----------CCeEEEEECCCCcEEEEeeCC-----CCCcEEEEEEcCCCCEEEEEeC--CCeE
Q 011916 173 LVDWSSQ-NVLAVGL-----------GTCVYLWTASNSKVTRLCDLG-----PGDSVCSVQWTREGSYISVGTN--LGQV 233 (475)
Q Consensus 173 ~l~ws~~-~~la~~~-----------~~~V~lw~~~~~~~~~~~~~~-----~~~~V~~v~~spdg~~la~g~~--dg~v 233 (475)
.+.++++ +.+.++. ++.|.+||..+.+....+.+. +......++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 5889987 4444442 467999999999988777643 2345678999999999999874 5799
Q ss_pred EEEECCCCeeeEE-ecCCCCceEEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEE------ecCccCCEEEEEEcCC
Q 011916 234 QVWDGTQCKRVRT-FGGHQTRAGVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICK------LAGHKSEVCGLKWSHD 303 (475)
Q Consensus 234 ~iwd~~~~~~~~~-~~~h~~~v~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~~h~~~V~~l~~s~~ 303 (475)
.+||+.+++.+.. +... .. ..+.+ + +..+++.+.||.+.+|++...++.... +..+...+ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~~-~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA-GC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGGT-TE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecCC-Cc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998887 5532 22 11222 3 367888999999999998754444311 11122222 2334567
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee--EEEecc----------ccceeEEEECCCCCcEEEEec--CC------CCCeEEE
Q 011916 304 DRELASGGNDNQLLVWNQHSQQPT--LRLTEH----------TAAVKAIAWSPHQSSLLASGG--GT------ADRCIRF 363 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~~--~~~~~h----------~~~v~~l~~sp~~~~ll~sg~--Gs------~d~~I~i 363 (475)
+..++..+.++.|+++|+...... ..+... ......++|+|+++.++++.. |. ..+.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 778888888999999999755422 121110 111223789999988887642 00 1358999
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceEEEecCCCcceEEEEECCCCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
||+.+++.+..+..+. +..++|+|+|++|+++ .. +.|.+||..++ +.+.++..+......++++|||.
T Consensus 291 iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~--n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL--DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTTTEEEEEEECTT-CCEEEEETTTTEEEEE--CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcEEEEEecCC-eeEEEECCCCCEEEEe--CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999999998777 9999999999998884 34 99999999999 99999877777889999999986
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=1.2e-15 Score=148.17 Aligned_cols=262 Identities=10% Similarity=0.075 Sum_probs=183.7
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
++.+.|+++ .++..+.++.+..| .++....+. .+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 456677765 34444567788888 233333333 455678999999999988888889999999998887665554
Q ss_pred CCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeC------CC
Q 011916 249 GHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGN------DN 314 (475)
Q Consensus 249 ~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~------Dg 314 (475)
.+...+.+++++ ++++++...+ +.|.+||... ......+. .+...+.+++++++|+++++... .+
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 567789999995 5666666665 6899999873 33322222 34457999999999988777654 35
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeee--------cCCCCeeEEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSV--------DTGSQVCNLA 385 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~--------~~~~~v~~l~ 385 (475)
.|..+|..+++.. .+..+...+..++|+|+++.++++.. .++.|.+||+.+ +..+..+ .....+..++
T Consensus 163 ~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred eEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 6777776655443 33334456789999999987777654 678999999864 4332211 1123678899
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc------ceEEEEECCCCCEEEEEeCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL------RVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~spdg~~l~s~s~D 443 (475)
++++|+.+++ ...++.|.+||. +++.+..+..+.. .+.+++|++|+..|+.++.+
T Consensus 240 ~d~~G~l~v~--~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVA--MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEE--EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEE--EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999987776 456789999998 5666666654433 68999999998777665554
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2.4e-16 Score=155.62 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=164.0
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCE--EEEEe-------------CCCeE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSY--ISVGT-------------NLGQV 233 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~--la~g~-------------~dg~v 233 (475)
+..++|+++ ++|+++..+.|.+|++. +++...+......+.+.+++|+|+|++ ++++. .+|.+
T Consensus 42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 456889987 44444443399999997 777655443211133567899999994 44543 68999
Q ss_pred EEEECC-CCeeeEEec----CCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCcc--EEEec--CccCCEEEEEEc
Q 011916 234 QVWDGT-QCKRVRTFG----GHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDY--ICKLA--GHKSEVCGLKWS 301 (475)
Q Consensus 234 ~iwd~~-~~~~~~~~~----~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~--~~~~~--~h~~~V~~l~~s 301 (475)
.+|++. +++....+. .+...+.+++|+ +++|+++.. ++.|.+||+...++. +..+. .|...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999997 465544443 255678899995 677777654 689999999722222 22232 245679999999
Q ss_pred CCCCEEEEEeC-CCcEEEEECC--CCcee---EEEec-------ccc------ceeEEE-ECCCCCcEEEEecCCCC---
Q 011916 302 HDDRELASGGN-DNQLLVWNQH--SQQPT---LRLTE-------HTA------AVKAIA-WSPHQSSLLASGGGTAD--- 358 (475)
Q Consensus 302 ~~~~~lasg~~-Dg~I~iwd~~--~~~~~---~~~~~-------h~~------~v~~l~-~sp~~~~ll~sg~Gs~d--- 358 (475)
|||++|++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|+|++|+++..+ .+
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~~~ 280 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKFEL 280 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SSTTS
T ss_pred CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCCCC
Confidence 99999988775 6899999875 45442 12221 122 588999 99999988776531 12
Q ss_pred -CeEEEEECC-CCceee---eec-CCCCeeEEEEcC---CCCeEEEEEecCCCeEEEEECCCC
Q 011916 359 -RCIRFWNTS-NGHQLN---SVD-TGSQVCNLAWSK---NVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 359 -~~I~iwd~~-~~~~~~---~~~-~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+.|.+|++. +++... .+. ....+..++|+| +|++|+++ +..++.|.+|++...
T Consensus 281 ~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred CCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEchh
Confidence 289999986 666543 232 345577899999 89999884 334689999998655
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=2.5e-16 Score=155.32 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=185.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEecCC------
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----------LGQVQVWDGTQCKRVRTFGGH------ 250 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h------ 250 (475)
++.|++||..++++...+..+ ..+ .++|+|||++|+++.. ++.|.+||..+.+.+.++...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred cCeEEEEECCCCeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 679999999999988777643 223 8999999999999873 577999999999888877632
Q ss_pred CCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-
Q 011916 251 QTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~- 323 (475)
......+++ ++++|+++.. ++.|.+||+. ..+.+.. +. +.. ...+.+.|++ ..+++.+.||.+.+|++..
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 234455666 6788888764 6899999998 4455554 33 222 2335667765 6788889999999999875
Q ss_pred CceeEEE------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeeEE
Q 011916 324 QQPTLRL------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--NSVDT-----------GSQVCNL 384 (475)
Q Consensus 324 ~~~~~~~------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l 384 (475)
++..... ..+..+ ..+.+++++..++... .++.|.++|+...... ..+.. ......+
T Consensus 184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 4443221 111111 2333456676666543 6889999998755421 22111 0112237
Q ss_pred EEcCCCCeEEEEEe-c--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC-
Q 011916 385 AWSKNVNELVSTHG-Y--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS- 454 (475)
Q Consensus 385 ~~s~~~~~l~~~~g-~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~- 454 (475)
+|+|+++.++++.. . ..+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 89999999888532 0 13589999999999999998877 999999999999998886 99999999988
Q ss_pred -CCCCC
Q 011916 455 -LKAPA 459 (475)
Q Consensus 455 -~~~~~ 459 (475)
+....
T Consensus 337 l~~~~~ 342 (361)
T 2oiz_A 337 PKLLRT 342 (361)
T ss_dssp CEEEEE
T ss_pred ceeeEE
Confidence 65544
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=6.5e-17 Score=160.29 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=173.4
Q ss_pred EEEECCCCcEEEEeeCCCCC-----cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--C
Q 011916 191 YLWTASNSKVTRLCDLGPGD-----SVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 191 ~lw~~~~~~~~~~~~~~~~~-----~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~ 260 (475)
...|..++.....+. .+.. .+.+++|+|||++|+..... ..|.+||+.+++......++......+.| +
T Consensus 13 ~~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 344677776555543 2222 26778999999998887653 46888999888765544433332333556 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEE-------------------EEEcCCCCEEEEE-----eCCCcE
Q 011916 261 SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG-------------------LKWSHDDRELASG-----GNDNQL 316 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~s~~~~~lasg-----~~Dg~I 316 (475)
++.|+.++.++.|.+||+.. +........+...... +.|+|+++.++.+ ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLET-LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp SSEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCEEEEEEcCCcEEEEECCC-CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 78999999999999999973 4433333333332222 3567777766654 356789
Q ss_pred EEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCCC---CeEEEEECCCCceeeeecC--CCCeeEEEEcCCC
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTAD---RCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d---~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~ 390 (475)
++||+.+++..... .+...+..+.|+| ++..|+.+..+..+ ..|.+||+.+++....... ...+..+.|+|+|
T Consensus 171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 99999988765443 5677889999999 78766665431111 5799999877654433332 2247789999999
Q ss_pred CeEEEEEec-CC--CeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEe----------------CCCCEEEEe
Q 011916 391 NELVSTHGY-SQ--NQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGA----------------GDETLRFWN 450 (475)
Q Consensus 391 ~~l~~~~g~-~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s----------------~Dg~I~iW~ 450 (475)
+.|+.+... .. +.|++||+.+++........ . .. +.|+| ||++|++++ .+..|++||
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 988775221 12 44999999887654332211 1 23 89999 999888765 347899999
Q ss_pred cCCCCCC
Q 011916 451 VFPSLKA 457 (475)
Q Consensus 451 ~~~~~~~ 457 (475)
+..+...
T Consensus 327 ~~~~~~~ 333 (396)
T 3c5m_A 327 TKAKSAQ 333 (396)
T ss_dssp TTTTBCC
T ss_pred cccCceE
Confidence 9876643
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=1.9e-15 Score=162.49 Aligned_cols=242 Identities=9% Similarity=0.048 Sum_probs=175.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCc----------
Q 011916 210 DSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRN---------- 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~---------- 272 (475)
..+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++| +++.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 4688999999999999877644 8999999999877643222 23667888 5688888887766
Q ss_pred ------EEEEECCCCCcc-EEEec--CccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEEe
Q 011916 273 ------ILQHDLRVSSDY-ICKLA--GHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHS------QQ-PTLRLT 331 (475)
Q Consensus 273 ------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~------~~-~~~~~~ 331 (475)
|.+|++...... ...+. .|...+..+.|+|||++|+.++. +..|++||+.+ +. ....+.
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 999999754322 22222 35566889999999999988764 57899999986 43 356666
Q ss_pred ccccceeEEEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCC--CeeEEEEcCCCCeEEEEEecCCC--e
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGG-TADRCIRFWNTSNGHQ---LNSVDTGS--QVCNLAWSKNVNELVSTHGYSQN--Q 403 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~~~---~~~~~~~~--~v~~l~~s~~~~~l~~~~g~~dg--~ 403 (475)
.+...+.. .|+|+|..|++.+.. .....|.+||+.++.. ...+.+.. .+..+.|++++..+++ ...++ .
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~--~~~~g~~~ 360 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC--YLHDVKNT 360 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE--EEETTEEE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE--EEECCEEE
Confidence 66666554 588999988777541 1245799999988742 22233333 5778899866665555 44566 5
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE-e---CCCCEEEEecCCCC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-A---GDETLRFWNVFPSL 455 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s---~Dg~I~iW~~~~~~ 455 (475)
|++|++.+++.+..+..+.+.|..+.++|++..|+.. + ..++|++||+.++.
T Consensus 361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7778887788888888888889999999998766633 2 34789999998766
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=3.1e-16 Score=166.98 Aligned_cols=242 Identities=8% Similarity=-0.025 Sum_probs=171.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeeEEecCCCCceE---------EEEe----CCCE-EEEEeC-
Q 011916 207 GPGDSVCSVQWTREGSYISVG--TNLGQVQVWDGTQCKRVRTFGGHQTRAG---------VLAW----NSRI-LSSGSR- 269 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g--~~dg~v~iwd~~~~~~~~~~~~h~~~v~---------~l~~----~~~~-l~sgs~- 269 (475)
+|...+..++|++++-+++.. ..++...||....+...+.+..|...+. .+.| +++. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 467789999999876666666 4578899999655555667776665554 4444 4666 665543
Q ss_pred CCcEEEEECCCCC-ccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------Ccee
Q 011916 270 DRNILQHDLRVSS-DYICKLAG-----HKSEVCGLKWSHDDRELASGGND----------NQLLVWNQHS------QQPT 327 (475)
Q Consensus 270 dg~I~iwd~~~~~-~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~D----------g~I~iwd~~~------~~~~ 327 (475)
+..|.++++...+ .....+.. |...+..++|+|||+.|++++.| ..|++||+.+ ++ .
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 179 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-V 179 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-S
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-e
Confidence 5566666654102 33445555 66788999999999999998877 5899999988 54 4
Q ss_pred EEEe-ccccceeEEEECCCCCcEEEEecCC-----CCCeEEEEECC-CC---ceeeeec-CCCCeeEEEEcCCCCeEEEE
Q 011916 328 LRLT-EHTAAVKAIAWSPHQSSLLASGGGT-----ADRCIRFWNTS-NG---HQLNSVD-TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 328 ~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~-~~---~~~~~~~-~~~~v~~l~~s~~~~~l~~~ 396 (475)
..+. .+...+..++|+|||+.|+.+.... ....|++||+. ++ +...... +...+..+.|+|+|+.+++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~- 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA- 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE-
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE-
Confidence 4555 6667888999999999887765310 12589999998 57 3333333 3578999999999995554
Q ss_pred EecCCC--eEEEEECCCCceEEEecCCCcc--------eEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQN--QIMVWKYPSMAKVSTLTGHSLR--------VLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg--~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+..++ .|++||..+++.......+... +..++|+++++++++++. +.++||.++
T Consensus 259 -~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 259 -TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp -ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred -ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 55667 6777777666654333333222 567899999999999998 999999554
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=4.5e-13 Score=127.09 Aligned_cols=273 Identities=9% Similarity=-0.038 Sum_probs=190.1
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-E
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-R 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-~ 245 (475)
..+.++.++++ +++++.. ++.|.+|+.. ++............+.++++.++|.++++...++.|..||.. ++.. .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 34677888876 6666665 6899999998 665544322345789999999999977777768899999976 3322 2
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+......+..++++ +.++++...++.|.+||.. ..........+...+.++++.++|+++++...++.|.+||. +
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 222345578888885 5666666678899999983 33222223334567899999999988887777789999999 6
Q ss_pred CceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-ec-CCCCeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS-VD-TGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.... +..+...+.++++.+++. ++++.. .++.|.+||. +++.... .. ....+..++++++|+.+++ ...
T Consensus 171 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~ 244 (299)
T 2z2n_A 171 GDITEFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT--EWG 244 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe--ccC
Confidence 654332 233445688999999988 555443 5789999999 6664432 11 3367899999999986665 556
Q ss_pred CCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 401 QNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++.|.+||. +++... .+..+...+.++++ ++|.++++.. .+.|..++....
T Consensus 245 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 789999998 443222 23345567999999 8998777665 556767776543
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=4.3e-14 Score=137.35 Aligned_cols=234 Identities=14% Similarity=0.142 Sum_probs=175.4
Q ss_pred eeEEecCCC-CEEEEEcCC-------------------------eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGT-------------------------CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI 224 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~-------------------------~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l 224 (475)
+..++++++ +++++..++ .|++||..++++.......+-.....++++++|+++
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~ 105 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW 105 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence 677888886 666666544 699999999998776643445678999999999988
Q ss_pred EEEeCCCeEEEEECCCCe-eeEEe---------cCCCCceEEEEeC---CCEEEEEe-CCCcEEEEECCCCCccEEEecC
Q 011916 225 SVGTNLGQVQVWDGTQCK-RVRTF---------GGHQTRAGVLAWN---SRILSSGS-RDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 225 a~g~~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~---~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
++...++.|++||..... .+..+ .++-.....++++ +.++++.+ .++.|.+||. .+..+..+..
T Consensus 106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~--~g~~~~~~~~ 183 (329)
T 3fvz_A 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP--SGKFVTQWGE 183 (329)
T ss_dssp EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT--TSCEEEEECE
T ss_pred EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC--CCCEEEEecc
Confidence 888889999999976542 45555 2344568889985 45666665 6899999995 3555555532
Q ss_pred ----------ccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEec---
Q 011916 291 ----------HKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGG--- 354 (475)
Q Consensus 291 ----------h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~--- 354 (475)
+-....+|+++++ +.++++...++.|++||..+++.+..+. .+...+.+++|+| +. ++.+.+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~ 261 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPY 261 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCC
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEE
Confidence 2344899999998 7777777788899999999888887774 3566788999999 32 333332
Q ss_pred --CCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 355 --GTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 355 --Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
...+..|++||..+++.+..+. ....+..++++++|..+++ ...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCC
Confidence 1235689999999999998874 3456899999999955555 6678899999974
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=2.8e-14 Score=136.20 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=168.4
Q ss_pred CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
......+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++ +.++++...++.|.+||... +..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcE
Confidence 345678999999998 7888888999999999877 66677777889999994 57776666678999999863 333
Q ss_pred EEEecCc----cCCEEEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 285 ICKLAGH----KSEVCGLKWSHDDRELASG----G-------------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 285 ~~~~~~h----~~~V~~l~~s~~~~~lasg----~-------------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
....... ...+..++++++|+++++. + ..+.|..++.. ++ +..+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 2222211 2346679999999988873 3 13456666665 43 34455566778999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECC-CCce---eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTS-NGHQ---LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~---~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
|+++.+ ++.. .++.|.+|++. ++.. ...+ .....+..++++++|+.+++ . ++.|.+|+.. ++.+..+
T Consensus 181 ~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 181 PSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp TTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT-SCEEEEE
T ss_pred CCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC-CCEEEEE
Confidence 999977 6654 78999999987 5554 2222 13345678999999986665 3 7899999976 7788888
Q ss_pred cCCCcceEEEEE-CCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLAT-SPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~-spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.. +.+++| +++++.|++++.++ +|.+..
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 87777 999999 68999999888774 444443
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.1e-14 Score=141.52 Aligned_cols=262 Identities=10% Similarity=0.028 Sum_probs=185.3
Q ss_pred CCeEEEEECCCCcEEEEeeC-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-C
Q 011916 187 GTCVYLWTASNSKVTRLCDL-----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-N 260 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~ 260 (475)
++.|.+||.+++++...+.. ........+.+. +++.+++...++.|.+||..+++.+.++.. ......+++ .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence 57999999999987664421 123456778774 445555555679999999999999888853 456777777 3
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEec
Q 011916 261 SRILSSGS-RDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 261 ~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
+..++++. .++.|.+||.. ..+....+.... .....+++ ++..|+++. .++.|.++|+.+++.+..+..
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 33555555 89999999998 445444444322 14556777 344555554 488999999999988777754
Q ss_pred cccceeEEEECCCCCcEEEEecCCC--------CCeEEEEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTA--------DRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~--------d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
......++++|+|+ +++++.+.. .+.|.++|..+++....+.. +.....++|+|+++.|+++ ..
T Consensus 171 -g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~~-- 244 (328)
T 3dsm_A 171 -GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--NN-- 244 (328)
T ss_dssp -SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--SS--
T ss_pred -CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--cc--
Confidence 33457899999998 444443211 27899999999988877754 4578999999999999884 22
Q ss_pred eEEEEECCCCceEE--EecCCCcceEEEEECC-CCCEEEEE----eCCCCEEEEecCCCCCCCCc
Q 011916 403 QIMVWKYPSMAKVS--TLTGHSLRVLYLATSP-DGQTIVTG----AGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 403 ~I~iwd~~~~~~~~--~l~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.|.+||..+++... .+..+.....+++++| ++.++++. ..++.|.+|+.. ++....+
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 89999998877532 1222245689999999 56666665 578999999998 6555443
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1e-13 Score=144.23 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=194.8
Q ss_pred EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC--
Q 011916 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN-- 260 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~-- 260 (475)
..++.|.++|..+++++..+.. ...+..+.|+|||+++++++.+|.|.+||+. +.+.+..+.... ....++++
T Consensus 174 ~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 3478999999999999888764 3467799999999999999999999999996 788887776433 34566665
Q ss_pred ----CCEEEEEe-CCCcEEEEECCCCCccEEEecC----------ccC-CEEEEEEcCCCCE-EEEEeCCCcEEEEECCC
Q 011916 261 ----SRILSSGS-RDRNILQHDLRVSSDYICKLAG----------HKS-EVCGLKWSHDDRE-LASGGNDNQLLVWNQHS 323 (475)
Q Consensus 261 ----~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~~-~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~ 323 (475)
++++++++ .+++|.++|.. ..+.+..+.. |.. .+..+..++++.. ++....+|.|.++|...
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~ 329 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 329 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence 56666665 56999999987 4555544432 212 6788999987664 44455679999999987
Q ss_pred CceeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCe---eEEE-EcCCCCeEEEEE
Q 011916 324 QQPTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQV---CNLA-WSKNVNELVSTH 397 (475)
Q Consensus 324 ~~~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v---~~l~-~s~~~~~l~~~~ 397 (475)
.+.+... .........+.|+|++++++++.. .++.|.++|+.+++.+..+.. +... .... ++|++..+.++.
T Consensus 330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~ 407 (567)
T 1qks_A 330 LNNLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 407 (567)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CccceeeeeeccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeC
Confidence 5432211 123345678899999999988875 689999999999998877765 3211 2333 578866666543
Q ss_pred ecCCCeEEEEECCC-------CceEEEecCCCcceEEEEECCCCCEEEEEeC-------CCCEEEEecCCC
Q 011916 398 GYSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAG-------DETLRFWNVFPS 454 (475)
Q Consensus 398 g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iW~~~~~ 454 (475)
...++.|.++|..+ .+.+.++......-..+..+|++++|.+... .++|.++|+.+.
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 34578999999987 6788888765444456789999999998763 359999999876
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=1.6e-14 Score=135.47 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=168.1
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 211 SVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 211 ~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++ ++++++.. ++.|.+||... .. ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~~-~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-NN-QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-SC-CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-ce-Eee
Confidence 788999999999666 44678899999976654332222334567788885 46555544 88999999863 22 222
Q ss_pred ec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 288 LA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 288 ~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
+. .....+.+++++++|+++++...++.|.+|+..+.............+.++++++++. ++++.. .++.|.+||.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~ 178 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEA 178 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEec
Confidence 32 2336789999999999888777788999998765544332222334678999999998 666543 5789999998
Q ss_pred CCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC
Q 011916 367 SNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 367 ~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
.+......... ...+..++++++|..+++ ...++.|.+|+............+...+.+++++++|+++++...++.
T Consensus 179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred CCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence 87765443322 267899999999966665 556889999998765443322234467899999999998888889999
Q ss_pred EEEEecCCCCC
Q 011916 446 LRFWNVFPSLK 456 (475)
Q Consensus 446 I~iW~~~~~~~ 456 (475)
|+++++...+.
T Consensus 257 v~~~~~~~~~~ 267 (270)
T 1rwi_B 257 VVKLTSLEHHH 267 (270)
T ss_dssp EEEECCCGGGS
T ss_pred EEEEcCCCccc
Confidence 99999876554
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.1e-13 Score=131.03 Aligned_cols=230 Identities=12% Similarity=0.186 Sum_probs=164.8
Q ss_pred eeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeC-----CCCCcEEEEEE-cCCCCEEEEEeC-CCeEEEEECCCC
Q 011916 171 LNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDL-----GPGDSVCSVQW-TREGSYISVGTN-LGQVQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~-spdg~~la~g~~-dg~v~iwd~~~~ 241 (475)
...++++++ +++++. .++.|.+|+.. ++....+.. ++...+.++++ .++++++++... ++.|.+|| .++
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 566778775 555554 47899999987 444444421 22357899999 467766666543 78999999 667
Q ss_pred eeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 242 KRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
+.+..+. .+...+..++++ ++++++...++.|.+||.. +..+..+. .+...+.+++++++|+++++...++.|
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 187 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 187 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence 7776664 344578888884 5777777788999999965 34444443 455678999999999988887888999
Q ss_pred EEEECCCCceeEEEecc--ccceeEEEECCCCCcEEEEecCCCCC-eEEEEECCCCceeeeecCC---CCeeEEEEcCCC
Q 011916 317 LVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQSSLLASGGGTADR-CIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs~d~-~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~ 390 (475)
++||.. ++.+..+..+ ...+..|+++++|. ++++.. .++ .|.+||. +++.+..+... ..+..++++++|
T Consensus 188 ~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 188 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred EEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-EEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC
Confidence 999974 4555566443 35789999999997 555543 455 9999995 56666666432 347799999999
Q ss_pred CeEEEEEecCCCeEEEEECCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+.+++ . .++.|++|++...
T Consensus 263 ~l~vs--~-~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 263 SVVLA--S-KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEE--E-TTTEEEEEECSCC
T ss_pred cEEEE--C-CCCeEEEEEcccc
Confidence 75554 3 5899999998654
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.4e-13 Score=143.05 Aligned_cols=286 Identities=13% Similarity=0.107 Sum_probs=204.2
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECC--CCcEEEEeeCCCCCcEEEEEEc----CCCCEEEEEeC-CCeEEEEECCC
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWT----REGSYISVGTN-LGQVQVWDGTQ 240 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~s----pdg~~la~g~~-dg~v~iwd~~~ 240 (475)
.+..+.++++ .+++++.++.|.+||+. +.+.+..+.. ......++|+ |||++++++.. +++|.|+|..+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 3456888886 35666678999999996 7777776653 4457899999 69999988776 58999999999
Q ss_pred CeeeEEecCC-----------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 241 CKRVRTFGGH-----------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 241 ~~~~~~~~~h-----------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.+.+..+... ..++..+... +.+++....+|.|.++|...................++.|+|+|++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 9988876521 1256666663 3566667778999999987433222222234456778999999998
Q ss_pred EEEEe-CCCcEEEEECCCCceeEEEec-----cccceeEEE-ECCCCCcEEEEecCCCCCeEEEEECCC-------Ccee
Q 011916 307 LASGG-NDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIA-WSPHQSSLLASGGGTADRCIRFWNTSN-------GHQL 372 (475)
Q Consensus 307 lasg~-~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~-~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~~~ 372 (475)
|+++. .++.|.++|+.+++.+..+.- |.+ ..+. ++|++..+++++. -.++.|.++|+.+ .+.+
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEE
Confidence 87765 578999999999987766543 322 1223 5887666766652 1468999999988 6777
Q ss_pred eeecCCC-CeeEEEEcCCCCeEEEEEecC-----CCeEEEEECCCC-----ce-EEEec--------CCCcceEEEEECC
Q 011916 373 NSVDTGS-QVCNLAWSKNVNELVSTHGYS-----QNQIMVWKYPSM-----AK-VSTLT--------GHSLRVLYLATSP 432 (475)
Q Consensus 373 ~~~~~~~-~v~~l~~s~~~~~l~~~~g~~-----dg~I~iwd~~~~-----~~-~~~l~--------~h~~~V~~l~~sp 432 (475)
..+...+ .-..+..+|+++++.+..... .+.|.++|+.+. .. ...+. ....++..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 8876543 335678999999999843111 358999999877 22 12332 1245789999999
Q ss_pred CCCEEEEEe-----CCCCEEEEecCCCCCCCCc
Q 011916 433 DGQTIVTGA-----GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 433 dg~~l~s~s-----~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|+.+..+. .++.|.|+|..+.+....+
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 999877763 2789999999887765443
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=9.6e-14 Score=131.47 Aligned_cols=211 Identities=15% Similarity=0.075 Sum_probs=168.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-CceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEV 295 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 295 (475)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.+ ++++|+ +.++.|..||.. ++.+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~--G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD--GRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT--SCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC--CCEEEEEcCCCCccc
Confidence 46789999999999999999999999998766 46666666 678777 457889999983 5566666654 3578
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 296 CGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++.++|..+++ .. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~--~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LF--ATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ET--TTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ec--CCCEEEEECCC-
Confidence 89999999999999887 778888886 6777666542 2234567788999996554 33 79999999998
Q ss_pred CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC------cceEEEEECCCCCEEEEEe
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS------LRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~l~s~s 441 (475)
|+.+..+.....+..+...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.++++..
T Consensus 155 G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999999987777888899999999988 7777899999999999998886432 2378889999999888874
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=2.4e-14 Score=139.48 Aligned_cols=230 Identities=9% Similarity=0.088 Sum_probs=154.4
Q ss_pred eeEEecCCC-CEEE-EEcC---C--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-------------
Q 011916 171 LNLVDWSSQ-NVLA-VGLG---T--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL------------- 230 (475)
Q Consensus 171 v~~l~ws~~-~~la-~~~~---~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d------------- 230 (475)
+..+.|||+ ..|+ ++.+ + .|++|++.+++...+... .. +.+++|+|||+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 567899997 4444 4432 2 489999999887777653 23 9999999999999988742
Q ss_pred --------------CeEEEEECCCCeeeEEecCCCCceEEEEeCCC-EEEEEeCCC-------cEEEEECCCCCccEEEe
Q 011916 231 --------------GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR-ILSSGSRDR-------NILQHDLRVSSDYICKL 288 (475)
Q Consensus 231 --------------g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~sgs~dg-------~I~iwd~~~~~~~~~~~ 288 (475)
..|.+||+.+++.+..+.. . .+..++|+++ +++++..++ ...+|.+. .+. ...+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKM 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc-eEEe
Confidence 5799999998887455544 3 7788888432 677776542 44555554 343 3334
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEeccccceeE-EEECCCCCcEEEEecCCCCC
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLRLTEHTAAVKA-IAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..+ ..+..+ +|||++|+.++.+ ..|++|| +++.......+...+.. +.|+ ++ +++++. .++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~ 283 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF--EEG 283 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE--ETT
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEe--cCC
Confidence 344 555554 9999998887754 3688888 55544334456677886 9999 77 666554 789
Q ss_pred eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeE-EEEECCCCceEEEecCCCcc
Q 011916 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI-MVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I-~iwd~~~~~~~~~l~~h~~~ 424 (475)
.+++| +.+++....+.....+..+.|++ ..+++ +..++.. .+|.+. ++ ...+..|...
T Consensus 284 ~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~--~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 284 SVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYL--KETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEE--EECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred cEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEE--EcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 99999 87777655556667789999999 44444 3344433 566555 43 5556666544
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=1.3e-13 Score=133.93 Aligned_cols=236 Identities=7% Similarity=-0.037 Sum_probs=174.7
Q ss_pred eEEecCCCCEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQNVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..+.+..+.++++.. ++.|.+||..+++.+..+. .......++++++++ |+++. .++.|.+||..+++....+..
T Consensus 47 ~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 47 QSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 445556666666665 6899999999999887774 346788999999985 55555 789999999999998877763
Q ss_pred CC-----CceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC---------
Q 011916 250 HQ-----TRAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND--------- 313 (475)
Q Consensus 250 h~-----~~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D--------- 313 (475)
.. .....+++++..|+++. .++.|.++|.. ..+.+..+.. ......+.++++|++++++..+
T Consensus 124 g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE-TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT-TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 33 14455666666666665 48999999998 4555555543 2345688999999877776554
Q ss_pred -CcEEEEECCCCceeEEEecc-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ecC-CCCeeEEEEcC
Q 011916 314 -NQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--VDT-GSQVCNLAWSK 388 (475)
Q Consensus 314 -g~I~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~~~-~~~v~~l~~s~ 388 (475)
+.|.++|..+++....+... ......++|+|+++.++++ ++.|.+||..+++.... +.. ......++++|
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-----SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-----ccEEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 78999999998877666432 2368999999999988775 33899999998876422 222 46788999999
Q ss_pred CCCeEEEEEe----cCCCeEEEEECCCCceEEEec
Q 011916 389 NVNELVSTHG----YSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 389 ~~~~l~~~~g----~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++..|+++ . ..++.|.+||.. ++.+.++.
T Consensus 277 ~~g~lyva-~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 277 NNGEVYVA-DAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp TTCCEEEE-ECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCCeEEEE-cccccccCCEEEEECCC-CCEEEEEE
Confidence 76666664 4 467899999988 88887775
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.1e-14 Score=156.27 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=175.5
Q ss_pred eEEEEECCCCcEEEEeeC-----CCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeee-EEecCCCCceEEE
Q 011916 189 CVYLWTASNSKVTRLCDL-----GPGDSVCSVQWTREGSYISVGT-----NLGQVQVWDGTQCKRV-RTFGGHQTRAGVL 257 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~spdg~~la~g~-----~dg~v~iwd~~~~~~~-~~~~~h~~~v~~l 257 (475)
.|++.+..+++...+++. +|...+.+++|||||++||.+. .+..|++||+.+++.+ .... .......+
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~ 173 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATP 173 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Ccccccce
Confidence 455555555555555432 2344689999999999999543 3468999999998865 2111 11112678
Q ss_pred Ee--CCCEEEEEeCCCc-------------EEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCC----c
Q 011916 258 AW--NSRILSSGSRDRN-------------ILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGGNDN----Q 315 (475)
Q Consensus 258 ~~--~~~~l~sgs~dg~-------------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~ 315 (475)
+| +++.|+.++.|.. |++|++..... .+.....|...+.++.|+|||++|+.++.++ .
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 88 5678998888776 99999985442 2223334556789999999999998887666 7
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCce---eeeecC--CCCeeEEEEcCC
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQ---LNSVDT--GSQVCNLAWSKN 389 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~s~~ 389 (475)
|++||..+++ ...+..+...+....| +++. +++... +..++.|.+||+.++.. ...+.+ ...+..+.|+ +
T Consensus 254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G 329 (695)
T ss_dssp EEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred EEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence 8888766554 4455556666667777 6666 665542 11368999999988763 333333 3457778888 4
Q ss_pred CCeEEEEEecCCCeEEEEECC-CCceEEEecCC-CcceEEEEECCCCCEEEEE----eCCCCEEEEecCCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGH-SLRVLYLATSPDGQTIVTG----AGDETLRFWNVFPSL 455 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~----s~Dg~I~iW~~~~~~ 455 (475)
+..+++ ...++..+||.+. +++.+..+..+ .+.|..++++||+..|+.. ...++|++||+.+++
T Consensus 330 ~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 330 GHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 444454 5677877777554 45566667655 6678889999999877733 235789999998765
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=4.1e-14 Score=137.13 Aligned_cols=237 Identities=10% Similarity=0.078 Sum_probs=172.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
..|.++.|++++..++....++.++.| .++....+..+...+.+++|+ +++++++..++.|.+||.. .+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~-~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-TKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC-CCcEEEE
Confidence 457788899988877777788899999 456666777777788999995 5777788889999999987 3343333
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecC---CCC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGG---TAD 358 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~G---s~d 358 (475)
...+...+.+++|+++|+++++...+ +.|.+||..++.....+. .+...+.+++++|++..++++..+ ...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 33566789999999999988887766 689999998876543333 244578999999999744443210 013
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEE--------EecCCCcceEEEE
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVS--------TLTGHSLRVLYLA 429 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~--------~l~~h~~~V~~l~ 429 (475)
+.|..+|..+++..........+..++|+|+++.|+++ ...++.|.+||+.+ +..+. .+.++ ..+..++
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred ceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 66777877666554443334567889999999977664 45678999999863 33221 12222 4678899
Q ss_pred ECCCCCEEEEEeCCCCEEEEecC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++++|.++++...++.|.+|+..
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEcCCCEEEEECCC
Confidence 99999988888888999999984
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=1.5e-11 Score=116.59 Aligned_cols=270 Identities=11% Similarity=-0.016 Sum_probs=185.0
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR- 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~- 245 (475)
.....+.++++ +++++.. ++.|.+|+.. ++............+.++++.++|+++++...++.|..||.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 34567777776 5666654 6899999988 666553221234679999999999877776667899999987 55432
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+......+..++++ +.++++...++.|..+|.. .......+......+.++++.++++++++...++.|.+||. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 222344678888885 5666666668899999886 32222223334567899999999997776666789999998 5
Q ss_pred CceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.... ...+...+.++++.+++. ++++.. ..+.|.+||. +++..... .....+..++++++|+.+++ ...
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~ 249 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT--EWG 249 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe--ccC
Confidence 544321 223445688999999986 555543 4678999998 55544332 23456889999999986665 455
Q ss_pred CCeEEEEECCCCceE-EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKV-STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
++.|..|+. +++.. ..+......+.++++.++|.++++.. . .|..++.
T Consensus 250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 789999998 44433 22333456689999999998666554 4 5555554
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=4.6e-13 Score=128.29 Aligned_cols=235 Identities=10% Similarity=0.086 Sum_probs=167.9
Q ss_pred CcEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCeeeEEec----CCCCceEEEEeCC--CEEEEEeCCCcEEEE
Q 011916 210 DSVCSVQWTREGSYISV-------GTNLGQVQVWDGTQCKRVRTFG----GHQTRAGVLAWNS--RILSSGSRDRNILQH 276 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~-------g~~dg~v~iwd~~~~~~~~~~~----~h~~~v~~l~~~~--~~l~sgs~dg~I~iw 276 (475)
....+++|+++|.++++ +..++.|.+||..+++...... ++...+..+++++ ..|..++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 45679999999987777 5778999999988776543322 2446788898853 455556555689999
Q ss_pred ECCCCCccEEEe-cC-----ccCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEEecccc
Q 011916 277 DLRVSSDYICKL-AG-----HKSEVCGLKWSHDDRELASGGND---------------NQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 277 d~~~~~~~~~~~-~~-----h~~~V~~l~~s~~~~~lasg~~D---------------g~I~iwd~~~~~~~~~~~~h~~ 335 (475)
|.. +.. ..+ .. ....+.+++++++|+++++...+ +.|..||.. ++.. .+..+..
T Consensus 98 d~~--g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~ 172 (314)
T 1pjx_A 98 QTD--GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQ 172 (314)
T ss_dssp ETT--SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEES
T ss_pred eCC--CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCC
Confidence 986 332 222 11 12358899999999888776654 567778766 4433 3333445
Q ss_pred ceeEEEEC----CCCCcEEEEecCCCCCeEEEEECC-CCce-----eeeecCC--CCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 336 AVKAIAWS----PHQSSLLASGGGTADRCIRFWNTS-NGHQ-----LNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 336 ~v~~l~~s----p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~-----~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
....++|+ |+++.++++.. .++.|.+||+. +++. ...+... ..+..++++++|+.+++ ...++.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTTE
T ss_pred CcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--EcCCCE
Confidence 56889999 99987777754 67899999976 4432 2222222 45788999999987776 556789
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEE-EEeCCCCEEEEecCC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV-TGAGDETLRFWNVFP 453 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-s~s~Dg~I~iW~~~~ 453 (475)
|.+||..+++.+..+..+...+.+++|+++|+.|+ +...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987777777777778899999999999554 455568899999874
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=3.8e-13 Score=126.04 Aligned_cols=237 Identities=8% Similarity=-0.034 Sum_probs=161.7
Q ss_pred CceeEEecCCC-CEEE-E-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 169 FYLNLVDWSSQ-NVLA-V-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la-~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
+....++++++ ++++ + ..++.|++|+..+....... ......+.+++++++|+++++.. ++.|.+||........
T Consensus 24 ~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 24 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CCccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 36677888876 5555 4 34789999998766543322 23345678999999998555555 8899999987654432
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
........+..++++ ++++++...++.|.+|+... .............+.+++++++|+++++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 222333567888885 56777767788999997652 222222223334678899999999777777778999999887
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.........+...+.+|++.++|. ++++.. .++.|.+||..+........ ....+..++++++|+.+++ ...++
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~~ 255 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA--DRGND 255 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--EGGGT
T ss_pred CceEeecccCCCCceEEEECCCCC-EEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--ECCCC
Confidence 654433233336688999999995 666643 57899999987654433222 2356899999999986665 66789
Q ss_pred eEEEEECCCCc
Q 011916 403 QIMVWKYPSMA 413 (475)
Q Consensus 403 ~I~iwd~~~~~ 413 (475)
.|.+|++...+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999987654
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=8e-13 Score=125.11 Aligned_cols=209 Identities=12% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCCCEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-Cce
Q 011916 177 SSQNVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRA 254 (475)
Q Consensus 177 s~~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v 254 (475)
+|+++++++. ++.|++||.++++.+-.+..+....+.++.++|+|++|+ +.++.|..||. +++.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 4666655554 899999999999988777643324688999999999888 45678999998 899999988653 466
Q ss_pred EEEEe--CCCEEEEEeC-CCcEEEEECCCCCccEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 255 GVLAW--NSRILSSGSR-DRNILQHDLRVSSDYICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 255 ~~l~~--~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.++.+ +++++++.+. ++.|..+|. .++.+..+. .+......+.+.++|+++++...++.|.+||.. ++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 66666 6889888887 777777775 345444432 122345566788999999999999999999998 99
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeeEEEEcCCCCeEEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------SQVCNLAWSKNVNELVS 395 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s~~~~~l~~ 395 (475)
.+.++... ..+.++...+++..+++. . .++.|..+|..+|+.+..+... ..+..++..++|+.+++
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~-~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVAC-G--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEEC-B--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEe-C--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 88888754 456678888998855553 2 5778999999999999888521 12677778888887776
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=4.4e-13 Score=143.99 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=174.2
Q ss_pred CceeccCCCCCC--CCceeEEecCCC-CEEEEEc--CC----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQD--DFYLNLVDWSSQ-NVLAVGL--GT----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~--d~~v~~l~ws~~-~~la~~~--~~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+.. .+.+..++|||+ +.++.+. +| .|++||+.+++...... .+ ..+.+++|+|||+.|+.
T Consensus 110 ~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEE
T ss_pred cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEE
Confidence 344455443332 246788999998 5555443 22 89999999998776432 21 22668999999999999
Q ss_pred EeCCCe----------------EEEEECCCCee--eEEec--CCCCceEEEEe--CCCEEEEEeC-----CCcEEEEECC
Q 011916 227 GTNLGQ----------------VQVWDGTQCKR--VRTFG--GHQTRAGVLAW--NSRILSSGSR-----DRNILQHDLR 279 (475)
Q Consensus 227 g~~dg~----------------v~iwd~~~~~~--~~~~~--~h~~~v~~l~~--~~~~l~sgs~-----dg~I~iwd~~ 279 (475)
++.++. |++|++.+++. ...+. .|...+..+.| ++++|+.++. +..|.+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 988766 99999988752 22223 35566778888 5677777654 5689999997
Q ss_pred C------CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce--eEEEecccc--ceeEEEECCC
Q 011916 280 V------SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN----QLLVWNQHSQQP--TLRLTEHTA--AVKAIAWSPH 345 (475)
Q Consensus 280 ~------~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~I~iwd~~~~~~--~~~~~~h~~--~v~~l~~sp~ 345 (475)
. .......+..+...+.. .|+++|+.|+..++++ .|.+||+.++.. ...+..|.. .+..++|+++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 4 22245556666666655 4889999888776543 699999987642 344555544 6888999865
Q ss_pred CCcEEEEecCCCCC--eEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCc
Q 011916 346 QSSLLASGGGTADR--CIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMA 413 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~ 413 (475)
+. ++++.. .++ .|.+||+.+|+.+..+.. ...+..+.++|+++.++.+.. ...+.|++||+.+++
T Consensus 347 ~~-lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NF-LVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TE-EEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CE-EEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 54 666654 566 567788878887766653 456788999999988776422 245789999998876
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=6.5e-13 Score=126.61 Aligned_cols=229 Identities=11% Similarity=0.105 Sum_probs=161.8
Q ss_pred ceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+...+.|+++ + ++.++. ++.|+.|+..++ . ..+. .+...+.+++++++|+++++...++.|.+||..+++....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 4667999986 5 555554 789999999988 3 4443 4567899999999999877776778999999988776544
Q ss_pred ecCC----CCceEEEEeC--CCEEEEE----e-------------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 247 FGGH----QTRAGVLAWN--SRILSSG----S-------------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 247 ~~~h----~~~v~~l~~~--~~~l~sg----s-------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.... ...+..++++ |+++++. + ..+.|..++.. + ....+..+.....+++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCccEEECCC
Confidence 3321 2245567774 6777763 2 12345555543 3 34445566677899999999
Q ss_pred CCEEEEEeCCCcEEEEECC-CCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC
Q 011916 304 DRELASGGNDNQLLVWNQH-SQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~ 379 (475)
++.|++.+.++.|++||+. .++. ...+..+...+.+++++++|. ++++. ++.|.+||.. ++.+..+....
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEECCC
Confidence 9998777778999999997 4443 233333556678999999998 55442 6889999986 77777776444
Q ss_pred CeeEEEE-cCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 380 QVCNLAW-SKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 380 ~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
.+.+++| .++++.|++ +.. +.+.-++..+.+
T Consensus 257 ~~~~~~f~~~d~~~L~v--~t~-~~l~~~~~~~~~ 288 (296)
T 3e5z_A 257 TTSNLCFGGPEGRTLYM--TVS-TEFWSIETNVRG 288 (296)
T ss_dssp CCCEEEEESTTSCEEEE--EET-TEEEEEECSCCB
T ss_pred CceeEEEECCCCCEEEE--EcC-CeEEEEEccccc
Confidence 4899999 589998888 333 456666766554
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=1.4e-11 Score=121.63 Aligned_cols=257 Identities=10% Similarity=-0.023 Sum_probs=179.0
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC-------C
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH-------Q 251 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h-------~ 251 (475)
.|.++|..+++++..+..+. . - .++++|||++|+++. .++.|.+||..+.+.+..+... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-L-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-C-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 89999999999887775432 2 2 999999999999986 3678999999998888776432 1
Q ss_pred CceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 011916 252 TRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 252 ~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.....+.| ++++|+++.. ++.|.++| . .++.+.. +.. .. ++.+.+++ +.+++.+.||.+.++|. +++
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 12335556 6788888774 57899999 7 5555555 432 22 23444544 45667778999999999 777
Q ss_pred eeEEEe-----ccccc-eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecC-----------CCCeeEEEE
Q 011916 326 PTLRLT-----EHTAA-VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDT-----------GSQVCNLAW 386 (475)
Q Consensus 326 ~~~~~~-----~h~~~-v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~ 386 (475)
.+.... ....+ .....+.+++..++... ..+.+.+.|+.++. .+..+.. ......+.+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 653321 11111 12345666666555543 47899999987653 2222221 122344789
Q ss_pred cCCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCC
Q 011916 387 SKNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~ 456 (475)
+++++.++++... ..+.|.++|..+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.+.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 9999998885321 246899999999999988863 33589999999999 788777 589999999999887
Q ss_pred CCC
Q 011916 457 APA 459 (475)
Q Consensus 457 ~~~ 459 (475)
...
T Consensus 354 v~~ 356 (373)
T 2mad_H 354 DQS 356 (373)
T ss_pred Eee
Confidence 766
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=1.6e-11 Score=116.21 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=169.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+...+.++++.++|+++++...++.|.+||.. ++.... ...+...+..++++ +.++++...++.|..||.. ....
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 44689999999999977766667899999988 544332 22345678889884 5666666668899999976 2221
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
...+......+.++++.++|+++++...++.|.+||. +++.... ...+...+..+++.+++. ++++.. .++.|..
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~ 166 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTEN--QNNAIGR 166 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEET--TTTEEEE
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeC--CCCEEEE
Confidence 2222234567999999999988888777889999998 5543322 223456789999999987 555443 5789999
Q ss_pred EECCCCceeee-e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNS-V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~-~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
||. +++.... . .....+..++++++++.+++ ...++.|.+||. +++.... +..+...+.+++++++|.++++.
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 998 6665543 2 23456889999999886665 556789999998 6654332 33455678999999999977776
Q ss_pred eCCCCEEEEecC
Q 011916 441 AGDETLRFWNVF 452 (475)
Q Consensus 441 s~Dg~I~iW~~~ 452 (475)
..++.|..|+..
T Consensus 243 ~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 WGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCceEEEECCC
Confidence 677889999973
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=5.4e-13 Score=144.04 Aligned_cols=241 Identities=12% Similarity=0.016 Sum_probs=160.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCc-----------
Q 011916 210 DSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRN----------- 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~----------- 272 (475)
..+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|.+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 368899999999999987764 36999999999876532 1222235678843 67877776554
Q ss_pred ---EEEEECCCCCcc-EEEec--CccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEEeccccceeE
Q 011916 273 ---ILQHDLRVSSDY-ICKLA--GHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQ--QPTLRLTEHTAAVKA 339 (475)
Q Consensus 273 ---I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~--~~~~~~~~h~~~v~~ 339 (475)
|.+|++.+.... ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++ +....+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 889998644321 22232 3334589999999999988877543 8999999877 314555555555555
Q ss_pred EEECCCCCcEEEEec-CCCCCeEEEEECCCC--ceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCce
Q 011916 340 IAWSPHQSSLLASGG-GTADRCIRFWNTSNG--HQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAK 414 (475)
Q Consensus 340 l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~--~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~ 414 (475)
..+ |++..|++... +..++.|.+||+.++ +....+.+. ..+..+.|+ ++..+++ ...++..+||.+. ++..
T Consensus 322 ~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 FVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS--YIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE--EEETTEEEEEEEETTSCE
T ss_pred EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCc
Confidence 544 88887777653 112567999999885 233333333 335567777 3334444 5567766666543 4556
Q ss_pred EEEecC-CCcceEEEEECCCCCEEEEE----eCCCCEEEEecCCCC
Q 011916 415 VSTLTG-HSLRVLYLATSPDGQTIVTG----AGDETLRFWNVFPSL 455 (475)
Q Consensus 415 ~~~l~~-h~~~V~~l~~spdg~~l~s~----s~Dg~I~iW~~~~~~ 455 (475)
+..+.. +.+.|..+.++||+..|+.. ...++|++||+.+++
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666665 46778999999998766532 235789999997654
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=2.9e-11 Score=119.40 Aligned_cols=241 Identities=6% Similarity=-0.040 Sum_probs=168.2
Q ss_pred EEecCCC-CEEEEEc-----------CCeEEEEECCCCcEEEEeeCC-C-----CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-NVLAVGL-----------GTCVYLWTASNSKVTRLCDLG-P-----GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~~la~~~-----------~~~V~lw~~~~~~~~~~~~~~-~-----~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++|+ +.+.++. ++.|.+||..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 5778887 4555542 578999999999888777653 1 133458999999999999874 478
Q ss_pred EEEEECCCCeeeEE-ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec-----CccCC-EEEEEEcCCCC
Q 011916 233 VQVWDGTQCKRVRT-FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA-----GHKSE-VCGLKWSHDDR 305 (475)
Q Consensus 233 v~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~-V~~l~~s~~~~ 305 (475)
|.++| .+++.+.. +... ..+....+.+..+++.+.||.+.++|. ... ...... ..... .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEEEEeccccccCCcceeecceeEecCC
Confidence 99999 99998887 6532 223333344567788889999999999 333 332111 11112 12345666666
Q ss_pred EEEEEeCCCcEEEEECCCCce--eEEEec----------cccceeEEEECCCCCcEEEEecCC-------CCCeEEEEEC
Q 011916 306 ELASGGNDNQLLVWNQHSQQP--TLRLTE----------HTAAVKAIAWSPHQSSLLASGGGT-------ADRCIRFWNT 366 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~~~ll~sg~Gs-------~d~~I~iwd~ 366 (475)
.++..+..+.+.+.|+..... +..+.. .......++++|+++.++++.... ..+.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 555555778999999975532 222211 122344578999999888864210 1368999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.+++.+..+..+.....+.|+|+|+ .++++ ...++.|.+||..+++.+..+
T Consensus 306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISLGHDVDAISVAQDGGPDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCEEEEEEECCCCcCeEEECCCCCeEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 9999999998888899999999999 55552 446899999999999998874
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=4.8e-12 Score=124.21 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=183.0
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCC-----
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQ----- 251 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~----- 251 (475)
++.|++.|..+++++..+..+.. + .++++|||++|+++. .++.|.+||..+.+.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 46999999999999988876543 3 399999999988876 35789999999999988875221
Q ss_pred --CceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 011916 252 --TRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-Q 324 (475)
Q Consensus 252 --~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~ 324 (475)
.....+++ ++++++++.. ++.|.++|+. ..+.+..+..-. +...+....+.+++.+.||.+.+.++.. +
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECCC---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 12334455 6888888764 6899999998 556666654321 1223333456777888899999999876 5
Q ss_pred ceeEEEeccc----cce-eEEEE-CCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeec-----------CCCCeeEEE
Q 011916 325 QPTLRLTEHT----AAV-KAIAW-SPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVD-----------TGSQVCNLA 385 (475)
Q Consensus 325 ~~~~~~~~h~----~~v-~~l~~-sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~-----------~~~~v~~l~ 385 (475)
+.......+. ..+ ...+| .++|+.++++ .++.|++.|+.++. .+..+. .......++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 5432221111 112 22456 4677655543 57999999997664 333332 112344577
Q ss_pred EcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEE-eCCCCEEEEecCCCC
Q 011916 386 WSKNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTG-AGDETLRFWNVFPSL 455 (475)
Q Consensus 386 ~s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~-s~Dg~I~iW~~~~~~ 455 (475)
++++++.++++... ..+.|.++|+.+++.+..+... .++..|++++|++ +|+++ ..++.|.++|..+++
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 89999999986431 1357999999999999888632 3688999999997 66665 458999999999888
Q ss_pred CCCCcc
Q 011916 456 KAPALV 461 (475)
Q Consensus 456 ~~~~~~ 461 (475)
....+.
T Consensus 366 ~~~~i~ 371 (386)
T 3sjl_D 366 ELRSVN 371 (386)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 766543
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=2e-13 Score=134.39 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=182.0
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCc---------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
.++++++++. ++++++....+.+|+..+.. ........... |+.|+| |+++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 4788999986 78888887888889865433 11111113455 999999 99999999 78999999998
Q ss_pred CCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+.........|...+.++.+.+..+++++.||.|.+||+.... ... +...|.+++|||+| ++.|..||++++|
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~ 187 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSF 187 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence 8776666777788898888865559999999999999998433 322 45689999999999 7889999999999
Q ss_pred ECCCCce--eEEE------e---ccccceeEEEECCCCCcEEEEecCC---C-----CCeEEEEECCCCcee-eee-c--
Q 011916 320 NQHSQQP--TLRL------T---EHTAAVKAIAWSPHQSSLLASGGGT---A-----DRCIRFWNTSNGHQL-NSV-D-- 376 (475)
Q Consensus 320 d~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~ll~sg~Gs---~-----d~~I~iwd~~~~~~~-~~~-~-- 376 (475)
+...++. ..++ . +|...|.+|.|.+++.++++-+... . +..+++.+...+... ..+ +
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~ 267 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDIT 267 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSC
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCc
Confidence 9887764 4555 2 3778999999999988776644311 1 225677663222211 111 1
Q ss_pred --CCC-----C---eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------------CCCcceEEEEECC-
Q 011916 377 --TGS-----Q---VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------------GHSLRVLYLATSP- 432 (475)
Q Consensus 377 --~~~-----~---v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~sp- 432 (475)
.+. . ..--.|.|+.+.|+.++....-.|-+++-. +.+..+. ..+....++++.-
T Consensus 268 ~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG~alD~s 345 (388)
T 1xip_A 268 PPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPIGVAVDVV 345 (388)
T ss_dssp CCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEEEEEEECS
T ss_pred CCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccceeccCCCCCCCCcceEEEEEcc
Confidence 111 1 122357777777776655555566666532 2111111 1122344444422
Q ss_pred -CC---------------CEEEEEeCCCCEEEEecCCCC
Q 011916 433 -DG---------------QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 -dg---------------~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.. ..|..-+.||.+..|.+....
T Consensus 346 s~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~ 384 (388)
T 1xip_A 346 TSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVA 384 (388)
T ss_dssp CCC--------------CCEEEEEETTSEEEEEEEEC--
T ss_pred cCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchh
Confidence 11 247778899999999987654
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=4.2e-12 Score=124.63 Aligned_cols=256 Identities=10% Similarity=0.021 Sum_probs=178.5
Q ss_pred EecCCC-C-EEEEE----------cCCeEEEEECCCCcEEEEeeCCC------CCcEEEEEEcCCCCEEEEEeC--CCeE
Q 011916 174 VDWSSQ-N-VLAVG----------LGTCVYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTN--LGQV 233 (475)
Q Consensus 174 l~ws~~-~-~la~~----------~~~~V~lw~~~~~~~~~~~~~~~------~~~V~~v~~spdg~~la~g~~--dg~v 233 (475)
+.++|+ + ++++. .++.|.+||..+.+....+.++. ......+.|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 667776 3 44443 25789999999999988876543 124567999999999998874 6899
Q ss_pred EEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEE-EEEEc-CCCCEE
Q 011916 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVC-GLKWS-HDDREL 307 (475)
Q Consensus 234 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~-~l~~s-~~~~~l 307 (475)
.++|+.+++.+.++.... .........+.+++.+.||.+.+.++...++.......+. ..+. ...|. ++|+++
T Consensus 163 sVID~~t~~vv~tI~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEECCCCcEEEEEECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 999999999999886322 1111122457788889999999999975444433221111 1221 23554 577544
Q ss_pred EEEeCCCcEEEEECCCCce--eEEEe----------ccccceeEEEECCCCCcEEEEec----CC---CCCeEEEEECCC
Q 011916 308 ASGGNDNQLLVWNQHSQQP--TLRLT----------EHTAAVKAIAWSPHQSSLLASGG----GT---ADRCIRFWNTSN 368 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~--~~~~~----------~h~~~v~~l~~sp~~~~ll~sg~----Gs---~d~~I~iwd~~~ 368 (475)
+ .+.+|.|++.|+.+... +..+. ........++++++++.++++.. |+ ..+.|.++|+.+
T Consensus 242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 242 W-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp E-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred E-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 4 56689999999976542 22221 01234456888999998888642 00 136799999999
Q ss_pred CceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
++.+..+..+..+..++++++++ .|+++ ...++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 321 ~kv~~~i~vg~~~~~lavs~D~~~~ly~t-n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 321 GERLAKFEMGHEIDSINVSQDEKPLLYAL-STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CCEEEEEEEEEEECEEEECSSSSCEEEEE-ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEEECCCCcceEEECCCCCeEEEEE-cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99999998888899999999997 56664 456899999999999999988742 22344566665
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=1.2e-11 Score=123.93 Aligned_cols=234 Identities=9% Similarity=-0.000 Sum_probs=165.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCC--cEEEEECCCCCccE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDR--NILQHDLRVSSDYI 285 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg--~I~iwd~~~~~~~~ 285 (475)
.....|+|+++|+++++...++.|++||..+++........... . ++| +++.|+++..++ .|.+++...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46889999999997777777899999999988776655543322 2 666 467888888766 788888763332 2
Q ss_pred EEe----cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----Eeccccce-e-EEEECCCCCcEEEEecC
Q 011916 286 CKL----AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR----LTEHTAAV-K-AIAWSPHQSSLLASGGG 355 (475)
Q Consensus 286 ~~~----~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~----~~~h~~~v-~-~l~~sp~~~~ll~sg~G 355 (475)
..+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|++..|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~- 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ- 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-
Confidence 333 22456678999999555666677788999999987753322 11222222 3 9999997666888765
Q ss_pred CCCCeEEEEECCCCceeeeecCC---------------CCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEec
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTG---------------SQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~---------------~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~ 419 (475)
..+.|+.|+.... ........ .....++++++|+.+++ .. .++.|+.|++.++.. ..+.
T Consensus 287 -~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 287 -NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp -TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE-EEEE
T ss_pred -CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE-EEEe
Confidence 7889999997643 22222221 34788999999996555 66 788999999877763 4443
Q ss_pred CC---------------CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 420 GH---------------SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 420 ~h---------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++ -.....|+++++|.++++-..++.|+.+.++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 33 2458999999999888888888888887763
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=5.7e-13 Score=142.79 Aligned_cols=251 Identities=9% Similarity=0.002 Sum_probs=164.7
Q ss_pred CceeccCCCCC--CCCceeEEecCCC-CEEEEEc------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQ--DDFYLNLVDWSSQ-NVLAVGL------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~--~d~~v~~l~ws~~-~~la~~~------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+. ..+.+..++|||+ +.+|.+. +..|++||+.+++......+.. .....++|+|||+.|+.
T Consensus 106 ~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 106 EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEEE
T ss_pred cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEEE
Confidence 45555544332 2356888999998 5565432 2579999999998641111111 11268999999999999
Q ss_pred EeCCCe-------------EEEEECCCCe----eeEEecCCCCceEEEEe--CCCEEEEEeCCC----cEEEEECCCCCc
Q 011916 227 GTNLGQ-------------VQVWDGTQCK----RVRTFGGHQTRAGVLAW--NSRILSSGSRDR----NILQHDLRVSSD 283 (475)
Q Consensus 227 g~~dg~-------------v~iwd~~~~~----~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg----~I~iwd~~~~~~ 283 (475)
++.+.. |++|++.++. ++.....|...+..+.| +|++|+.++.++ .|.+++.. ..
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~--~~ 262 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG--EK 262 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT--CS
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC--CC
Confidence 998776 9999998875 33333345667888888 467777776655 56666553 22
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCce--eEEEecc--ccceeEEEECCCCCcEEEEecCC
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGG---NDNQLLVWNQHSQQP--TLRLTEH--TAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~--~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
....+..+...+....| ++|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++|+ + ..++++..
T Consensus 263 ~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~-- 337 (695)
T 2bkl_A 263 DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYL-- 337 (695)
T ss_dssp SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEE--
T ss_pred ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEE--
Confidence 34455555556666667 5666444443 257899999987653 2333333 4567888888 3 44777654
Q ss_pred CCCeEEEEECC-CCceeeeecC--CCCeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce
Q 011916 357 ADRCIRFWNTS-NGHQLNSVDT--GSQVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMAK 414 (475)
Q Consensus 357 ~d~~I~iwd~~-~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~ 414 (475)
.|+..++|.+. ++..+..+.. ...+..+.++++++.++.+.. ...+.|++||+.+++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 78887777554 4555555543 456778889999988875422 2347899999988763
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=3.3e-10 Score=107.17 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=168.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR-TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
....+.++++.++|+++++...++.|.+||.. ++... .+..+...+..++++ +.++++...++.|..+|.. ....
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 35678999999999977777678999999988 55443 223344678888885 5666666667889999987 3322
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..........+.++++.++|+++++...++.|..||.. ++... .+......+.++++.+++. ++++.. .++.|..
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~ 171 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN--QNNSIGR 171 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEE
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEec--CCCeEEE
Confidence 22233344679999999999888877778899999987 54432 2222446789999999998 555543 5788999
Q ss_pred EECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
||. +++..... .....+..+++.++++.+++ ....+.|.+|+. +++... .+..+...+.+++++++|.++++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 56554322 22356889999999876665 555778999998 444333 233455678999999999977777
Q ss_pred eCCCCEEEEecC
Q 011916 441 AGDETLRFWNVF 452 (475)
Q Consensus 441 s~Dg~I~iW~~~ 452 (475)
..++.|..|+..
T Consensus 248 ~~~~~i~~~~~~ 259 (300)
T 2qc5_A 248 WGANQIGRITND 259 (300)
T ss_dssp TTTTEEEEECTT
T ss_pred cCCCeEEEECCC
Confidence 667889999873
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=8.6e-11 Score=112.15 Aligned_cols=225 Identities=8% Similarity=0.059 Sum_probs=154.3
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
..-..+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++ ++++ .+. ++.|.+||... +...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~-g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYV-ATI-GTKFCALNWKE-QSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEE-EEE-TTEEEEEETTT-TEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEE-EEE-CCeEEEEECCC-CcEE
Confidence 345668999995 456666677899999999877653 332 34678899984 5644 444 56899999873 3322
Q ss_pred EEecC----ccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 286 CKLAG----HKSEVCGLKWSHDDRELASGGND---------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 286 ~~~~~----h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
..... ....+..++++++|+++++...+ ..-.||.+.....+..+..+......++|+|+++.++++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 22111 12347899999999976654321 223444444222233333444567899999999988887
Q ss_pred ecCCCCCeEEEEEC--CCCcee-----eeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc
Q 011916 353 GGGTADRCIRFWNT--SNGHQL-----NSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 353 g~Gs~d~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 424 (475)
.. .++.|.+|++ .++... ..+. .......+++.++|+..++ ....+.|.+||..+++.+..+..+...
T Consensus 167 ~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 167 DS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred cC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 65 6899999987 466532 1111 2356788999999987766 556788999999999999998888788
Q ss_pred eEEEEEC-CCCCEEEEEeC
Q 011916 425 VLYLATS-PDGQTIVTGAG 442 (475)
Q Consensus 425 V~~l~~s-pdg~~l~s~s~ 442 (475)
+++++|. ||++.|+.++.
T Consensus 243 ~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEeCCCCCEEEEEcC
Confidence 9999998 88877665543
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=4.8e-11 Score=114.09 Aligned_cols=232 Identities=10% Similarity=0.094 Sum_probs=157.7
Q ss_pred eeEEecCCC-CEEEE--------EcCCeEEEEECCCCcEEEEee---CCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 011916 171 LNLVDWSSQ-NVLAV--------GLGTCVYLWTASNSKVTRLCD---LGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~-~~la~--------~~~~~V~lw~~~~~~~~~~~~---~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd 237 (475)
...++|+++ .++++ ..++.|++|+..+++...... .++...+.+++++++ |+++ +++..+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCEEEEe
Confidence 467888876 56655 557899999998888765432 013467899999999 6544 444445799999
Q ss_pred CCCCeeeEE-ecC----CCCceEEEEeC--CCEEEEEeCC---------------CcEEEEECCCCCccEEEecCccCCE
Q 011916 238 GTQCKRVRT-FGG----HQTRAGVLAWN--SRILSSGSRD---------------RNILQHDLRVSSDYICKLAGHKSEV 295 (475)
Q Consensus 238 ~~~~~~~~~-~~~----h~~~v~~l~~~--~~~l~sgs~d---------------g~I~iwd~~~~~~~~~~~~~h~~~V 295 (475)
.. ++.... ... ....+.+++++ ++++++...+ +.|..+|.. +.. ..+..+....
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQVDTAFQFP 174 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEEEEEESSE
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEeccCCCCc
Confidence 88 665433 221 12357788885 5666665544 456666654 332 2333344567
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----eEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 296 CGLKWS----HDDRELASG-GNDNQLLVWNQH-SQQP-----TLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 296 ~~l~~s----~~~~~lasg-~~Dg~I~iwd~~-~~~~-----~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..++|+ ++++.|+.+ ..++.|.+||.. .++. ...+..+. ..+..++++++|..+++.. .++.|.+
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~---~~~~i~~ 251 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW---GSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE---TTTEEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc---CCCEEEE
Confidence 899999 999766555 567899999986 4432 22233333 5678999999997444433 4789999
Q ss_pred EECCCCceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 364 WNTSNGHQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 364 wd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
||..+++.+..+... ..+.+++|+++++.|+++ ...++.|..|+...
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 999878777666544 679999999999966663 44567899999764
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=5.5e-12 Score=136.16 Aligned_cols=250 Identities=10% Similarity=0.016 Sum_probs=164.7
Q ss_pred CceeccCCCCCCC--CceeEEecCCC-CEEEEEcC------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQDD--FYLNLVDWSSQ-NVLAVGLG------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~d--~~v~~l~ws~~-~~la~~~~------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+..+ +.+..++|||+ +.++.+.+ ..|++||+.+++...... +...+..++|+|| +.|+.
T Consensus 148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEE
T ss_pred CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEE
Confidence 4455554433332 47888999998 55555432 369999999998765421 1122357899999 99999
Q ss_pred EeCCCe--------------EEEEECCCCee--eEEec--CCCCceEEEEe--CCCEEEEEeCCC-----cEEEEECCCC
Q 011916 227 GTNLGQ--------------VQVWDGTQCKR--VRTFG--GHQTRAGVLAW--NSRILSSGSRDR-----NILQHDLRVS 281 (475)
Q Consensus 227 g~~dg~--------------v~iwd~~~~~~--~~~~~--~h~~~v~~l~~--~~~~l~sgs~dg-----~I~iwd~~~~ 281 (475)
+..++. |++|++.++.. ...+. .+...+..+.| +|++|+..+.++ .|.+||+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 887654 89999877652 22333 34445788888 467777776543 8999999743
Q ss_pred Ccc-EEEecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 282 SDY-ICKLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 282 ~~~-~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
... ...+..+...+.... +++|+.|+..+++ +.|.+||+.++ .....+..+...+..++|. +..++++..
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred CCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEE
Confidence 222 445555555555543 4889988888764 45999999874 3333444455566778887 445777654
Q ss_pred CCCCCeEEEEECC-CCceeeeec--CCCCeeEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q 011916 355 GTADRCIRFWNTS-NGHQLNSVD--TGSQVCNLAWSKNVNELVSTH--GYSQNQIMVWKYPSMA 413 (475)
Q Consensus 355 Gs~d~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~ 413 (475)
.|+..++|.+. ++.....+. ....+..+.++++++.++.+. ....+.|++||+.+++
T Consensus 382 --~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 382 --HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67776666543 455666554 346688899999998877542 2345789999998876
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=3.9e-11 Score=119.73 Aligned_cols=261 Identities=11% Similarity=0.062 Sum_probs=183.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC-------
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH------- 250 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h------- 250 (475)
+.|.++|..+.+++..+..+. .+ .++++|||++|+++. .++.|.++|..+.+.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 699999999999999887654 33 899999999998886 3678999999999998877521
Q ss_pred CCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 011916 251 QTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~ 325 (475)
......+.+ ++++|+++.. ++.|.+.|+. ..+.+..+..-. . ....|++ ..+++.+.||.+.+.++.+++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 112234445 6788888764 5789999998 455555554311 1 2233433 566667778888888886555
Q ss_pred eeEEE----eccccc-eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeeEEEEc
Q 011916 326 PTLRL----TEHTAA-VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--NSVDT-----------GSQVCNLAWS 387 (475)
Q Consensus 326 ~~~~~----~~h~~~-v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~s 387 (475)
..... .....+ ...+.+.+++..++++. ..+.+.+.|+...... ..+.. ......++++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 44221 111111 13457899998887765 5789999998665422 11110 1122347899
Q ss_pred CCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCCC
Q 011916 388 KNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLKA 457 (475)
Q Consensus 388 ~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~~ 457 (475)
++++.++++... ..+.|.++|..+.+.+.++... ....+++|+|||+ +++++. .++.|.++|+.+.+..
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 999998886431 1357999999999999988632 2588999999999 888887 5899999999998877
Q ss_pred CCc
Q 011916 458 PAL 460 (475)
Q Consensus 458 ~~~ 460 (475)
..+
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=1.2e-11 Score=132.39 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=162.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEE-ecCCCCceEEEEe-CCCEEEEEeCCC---------
Q 011916 208 PGDSVCSVQWTREGSYISVGTN-----LGQVQVWDGTQCKRVRT-FGGHQTRAGVLAW-NSRILSSGSRDR--------- 271 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~-----dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~-~~~~l~sgs~dg--------- 271 (475)
+...+..++|||||++||.+.. ...|++||+++++.+.. +... ....++| +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 3456788999999999986543 25799999999986543 2211 1234455 788888887774
Q ss_pred ----cEEEEECCCCCcc-EEEe--cC-ccCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeEEEecccccee
Q 011916 272 ----NILQHDLRVSSDY-ICKL--AG-HKSEVCGLKWSHDDRELASGGN----DNQLLVWNQHSQQ-PTLRLTEHTAAVK 338 (475)
Q Consensus 272 ----~I~iwd~~~~~~~-~~~~--~~-h~~~V~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~-~~~~~~~h~~~v~ 338 (475)
.|++|++.+.... ...+ .. |...+.++.|+|||++|+.... ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 3999998754432 2222 23 4456789999999998865432 3589999998764 4456666666555
Q ss_pred EEEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCC
Q 011916 339 AIAWSPHQSSLLASGGG-TADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSM 412 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~ 412 (475)
.. |++++..|++.... ...+.|..+|+.++.. ...+.+...+. .|+++++.|+.. ...++ .|++|++..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~-~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE-YMVDATARVEQFDYEGK 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE-EEETTEEEEEEECTTSC
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE-EEECCeeEEEEEECCCC
Confidence 55 67777777776531 1247899999988765 23334444444 899999998874 33444 6899998754
Q ss_pred ceEEEec-CCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCCC
Q 011916 413 AKVSTLT-GHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPSL 455 (475)
Q Consensus 413 ~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~~ 455 (475)
....+. .+.+.+..+.+++++..|+....+ ++|+.||+.++.
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 444444 345667788888888776655444 789999987664
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=4.1e-10 Score=109.02 Aligned_cols=219 Identities=7% Similarity=-0.030 Sum_probs=149.3
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 211 SVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 211 ~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
...+..|+|++ .+++++..++.|.+||..+++... +. ....+.+++|+ +++++ ++.+ .|.+||... +.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~-g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTAT-GVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTT-CCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCC-CcEEEE
Confidence 34678899974 556666678999999998876532 32 34578888884 45555 4444 499999863 332222
Q ss_pred ecC----ccCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 288 LAG----HKSEVCGLKWSHDDRELASGGN------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 288 ~~~----h~~~V~~l~~s~~~~~lasg~~------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
... ....+.+++++++|+++++... .+.|+.++ +++. ..+..+......++|+|+++.++++.. .
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~--~ 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDT--K 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEET--T
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEEC--C
Confidence 111 1235889999999997765542 24566666 4443 333334445789999999998877754 6
Q ss_pred CCeEEEEECC--CC-ce-----eeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 358 DRCIRFWNTS--NG-HQ-----LNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 358 d~~I~iwd~~--~~-~~-----~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
++.|.+||+. ++ .. +..+. .......+++.++|+.+++ ...++.|.+|+. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 7899999986 56 32 22222 2345778999999987776 445688999998 677777777777789999
Q ss_pred EEC-CCCCEEEEEeC
Q 011916 429 ATS-PDGQTIVTGAG 442 (475)
Q Consensus 429 ~~s-pdg~~l~s~s~ 442 (475)
+|+ +++..|+.++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88877655543
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=3.5e-12 Score=125.63 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=133.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEEC
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----------RVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~ 278 (475)
..+..+++++...++++|+.++ +.+|+++... ..... .+.. |..++|++.+|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 3688999999999999999974 6669865332 11222 3556 99999988999998 8899999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
+.-. .......|...+.++.+.+.. +|+++.||.|.+||+.++.... +...|.+++|+|+| +++ |. .|
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~v-g~--~d 181 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAV-LL--KD 181 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEE-EE--TT
T ss_pred hhhh-ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEE-EE--cC
Confidence 8443 455566778889998887653 8889999999999999877543 45689999999999 333 33 79
Q ss_pred CeEEEEECCCCce--eeee------c----CCCCeeEEEEcCCCCeEEEE
Q 011916 359 RCIRFWNTSNGHQ--LNSV------D----TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 359 ~~I~iwd~~~~~~--~~~~------~----~~~~v~~l~~s~~~~~l~~~ 396 (475)
|.+++|+...+++ ...+ . +...|.++.|.+++.++++.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999887775 5555 2 46779999999999988874
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=4.3e-11 Score=119.36 Aligned_cols=242 Identities=10% Similarity=0.063 Sum_probs=172.9
Q ss_pred EEecCCC-C-EEEEE----------cCCeEEEEECCCCcEEEEeeCC-C-----CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-N-VLAVG----------LGTCVYLWTASNSKVTRLCDLG-P-----GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~-~la~~----------~~~~V~lw~~~~~~~~~~~~~~-~-----~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++++ + ++++. .++.|.++|..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 4677776 3 44443 3578999999999998887654 1 233457899999999999874 578
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEe----cCccCCE-EEEEEcCCCCE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKL----AGHKSEV-CGLKWSHDDRE 306 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V-~~l~~s~~~~~ 306 (475)
|.+.|+.+++.+.++..... ..+.. ....+++.+.||.+.+.+.. .++..... ......+ ..+.+.+++..
T Consensus 202 VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 99999999999988864221 22222 34677788889999998884 44443221 1111111 23567889888
Q ss_pred EEEEeCCCcEEEEECCCCceeE--EEec----------cccceeEEEECCCCCcEEEEecC----C---CCCeEEEEECC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL--RLTE----------HTAAVKAIAWSPHQSSLLASGGG----T---ADRCIRFWNTS 367 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~--~~~~----------h~~~v~~l~~sp~~~~ll~sg~G----s---~d~~I~iwd~~ 367 (475)
++.....+.|.+.|........ .+.. .......++++|+++.++++... + .++.|.++|+.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 8888888999999987554211 1110 11222347899999988886420 0 14689999999
Q ss_pred CCceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+.+.+..+..+.....+.|+|+++ .++++ ...++.|.++|..+++.+.++
T Consensus 359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 359 TGERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 999999998877899999999999 77764 446899999999999999887
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=1.4e-10 Score=111.10 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=154.8
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++ ++++++...++.|.+|+.. +..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~- 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA- 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-
Confidence 45677899999998 6677777899999997 444 34555566778889985 5655555566889999975 222
Q ss_pred EEecCc-----cCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 286 CKLAGH-----KSEVCGLKWSHDDRELAS----GGN-------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 286 ~~~~~h-----~~~V~~l~~s~~~~~las----g~~-------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
..+..+ ...+..++++++|+++++ |.. .+.|+.||..+++..... .......++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 222111 134667999999998886 332 256888888766654333 44566889999
Q ss_pred CCCCcEEEEecCCC-----CCeEEEEECCCCcee--eee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011916 344 PHQSSLLASGGGTA-----DRCIRFWNTSNGHQL--NSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414 (475)
Q Consensus 344 p~~~~ll~sg~Gs~-----d~~I~iwd~~~~~~~--~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 414 (475)
|+++.|+++.. . .+.|.+|++..+... ..+ ........+++.++|+..++ . .+.|.+|+. .++.
T Consensus 197 pdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~-~~gv~~~~~-~g~~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS---S-GTGVCVFDS-DGQL 269 (305)
T ss_dssp TTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC---C-SSEEEEECT-TSCE
T ss_pred CCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe---c-CCcEEEECC-CCCE
Confidence 99998877653 2 378999998765411 111 12344678999999995544 3 345999997 5777
Q ss_pred EEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 415 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus 270 ~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 270 LGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77776555 588999999999888888765433
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=6.2e-10 Score=106.12 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=151.6
Q ss_pred ceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.....|+++ .++.+.. ++.|+.|+..+++... +. ....+.+++++++|++ +++. ++.|.+||.++++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT--MDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE--CSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee--CCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcEEEE
Confidence 4567889883 4555554 7899999999887643 32 3567999999999994 4444 46899999988765443
Q ss_pred ecC----CCCceEEEEeC--CCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE-E
Q 011916 247 FGG----HQTRAGVLAWN--SRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-G 310 (475)
Q Consensus 247 ~~~----h~~~v~~l~~~--~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las-g 310 (475)
... ....+..++++ ++++++... .....+|.+...+.. ..+..+......++|+|+++.|+. .
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEec
Confidence 322 12357788885 565554422 233456655533332 233334456789999999987654 4
Q ss_pred eCCCcEEEEEC--CCCce-----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCee
Q 011916 311 GNDNQLLVWNQ--HSQQP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVC 382 (475)
Q Consensus 311 ~~Dg~I~iwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~ 382 (475)
+.++.|.+||+ .++.. ...+..+......+++.++|. |.++.. ..+.|..||..+++.+..+... ..+.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE--TTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc--CCCEEEEEcCCCceEEEEEECCCCCce
Confidence 55789999997 45542 122233446788999999997 555433 4788999999999999888765 6799
Q ss_pred EEEEc-CCCCeEEEEEe
Q 011916 383 NLAWS-KNVNELVSTHG 398 (475)
Q Consensus 383 ~l~~s-~~~~~l~~~~g 398 (475)
+++|. |+++.|++++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 89998888654
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.35 E-value=1.4e-09 Score=107.19 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=174.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC--------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP--------GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~--------~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++++.++.|+.+|..+++..-...... ...+.+. ...++..+++++.+|.|..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3566666778899999999999776555422 2223222 222466788899999999999999998877765
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----CGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
...........+..++.++.++.|..+|.. .++.+.......... ..... .+..++.++.++.|..+|..++
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEA-DGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETT-TCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECC-CCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCC
Confidence 433333334456788889999999999997 444443333221110 11122 2457888888999999999999
Q ss_pred ceeEEEeccccc----ee---EEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 325 QPTLRLTEHTAA----VK---AIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 325 ~~~~~~~~h~~~----v~---~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
+.+......... +. .+.-.| .+..+++. + .++.+..+|..+|+.+....... ...+.. ++..+++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~ 282 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-A--YNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYL 282 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEE-C--TTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEE
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-e--cCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEE
Confidence 887766532110 00 011111 13334443 2 68999999999999887776443 334433 3566666
Q ss_pred EEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+..++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|.++|..+++...
T Consensus 283 --~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 283 --VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp --EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred --EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 56789999999999998877652 2222222333 35678889999999999998877544
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.35 E-value=7.5e-10 Score=110.72 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=156.0
Q ss_pred ceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~ 245 (475)
....++|+++ +++++.. ++.|++||..++.+..+... ..... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3566888876 4555554 57999999999888777653 22333 99999999999988866 79999977655444
Q ss_pred Ee----cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCE--EEEEEcCC-CCEEEEEeCC
Q 011916 246 TF----GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEV--CGLKWSHD-DRELASGGND 313 (475)
Q Consensus 246 ~~----~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V--~~l~~s~~-~~~lasg~~D 313 (475)
.+ ......+.++++++ ..|+.+..++.|..||.......... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22445667788753 56666778889999998743321110 12222222 28999995 5566666677
Q ss_pred CcEEEEECCCCceeEEEeccc---------------cceeEEEECCCCCcEEEEecCC-CCCeEEEEECCCCceeeeecC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHT---------------AAVKAIAWSPHQSSLLASGGGT-ADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~ll~sg~Gs-~d~~I~iwd~~~~~~~~~~~~ 377 (475)
+.|+.|+.... +..+.++. .....++++++|. |+++. + .++.|+.|++.++........
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEEEEEeCC
Confidence 89999997654 33333322 3478999999998 65553 3 578999999888865444332
Q ss_pred ---------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 378 ---------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 378 ---------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
-.....+++++++..+++ ...++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 135788999999766666 667778887764
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.34 E-value=1.5e-10 Score=123.19 Aligned_cols=277 Identities=9% Similarity=0.037 Sum_probs=186.5
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC----------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD----------SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~----------~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-+|..+|+..=..+..... ....+++ ++..|++++.|+.|..+|..+++.+..+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 45566666789999999999876655432110 0112222 46688999999999999999999998887
Q ss_pred CC-C----Cce-EEEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCccC-----------------------
Q 011916 249 GH-Q----TRA-GVLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGHKS----------------------- 293 (475)
Q Consensus 249 ~h-~----~~v-~~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~----------------------- 293 (475)
.+ . ..+ ......+..+++++. ++.|..+|.+ .++.+-.+.....
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECC-CCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 54 2 111 112223455555543 7899999998 4444443332111
Q ss_pred ---------CEEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEec--cc-------cc
Q 011916 294 ---------EVCGLKWSHDDRELASGGNDN-------------------QLLVWNQHSQQPTLRLTE--HT-------AA 336 (475)
Q Consensus 294 ---------~V~~l~~s~~~~~lasg~~Dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~ 336 (475)
....+.+++++..++.+..++ .|..+|.++++.+..+.. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 113577888888888887654 599999999998887664 21 11
Q ss_pred eeEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC------------Ce---------------------
Q 011916 337 VKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS------------QV--------------------- 381 (475)
Q Consensus 337 v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~------------~v--------------------- 381 (475)
..-+....+|+ .+++.+ +.+|.|+++|..+|+.+..+.... .+
T Consensus 315 p~l~~~~~dG~~~~~l~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHA--PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp CEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred cEEEecccCCcEeeEEEEE--CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 22223333563 355554 489999999999999987664221 01
Q ss_pred ---eEEEEcCCCCeEEEEEec-----------------------------------------CCCeEEEEECCCCceEEE
Q 011916 382 ---CNLAWSKNVNELVSTHGY-----------------------------------------SQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 382 ---~~l~~s~~~~~l~~~~g~-----------------------------------------~dg~I~iwd~~~~~~~~~ 417 (475)
..++++|++..+++.... ..|.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 146889998888774321 127899999999998887
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+. +...+....+..++..++.++.||.|++||..+++......
T Consensus 473 ~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 473 VE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 76 33344555566788889999999999999999998766543
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.31 E-value=9.5e-11 Score=114.96 Aligned_cols=262 Identities=11% Similarity=-0.058 Sum_probs=176.3
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC--------
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH-------- 250 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h-------- 250 (475)
.|.++|..+++++..+..+.. + .+.++|||++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 899999999999999887654 4 799999999999987 3688999999999999988633
Q ss_pred -CCceEEEEeCCCEEEEEeC--CCcEEE--EECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-
Q 011916 251 -QTRAGVLAWNSRILSSGSR--DRNILQ--HDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 251 -~~~v~~l~~~~~~l~sgs~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~- 323 (475)
...-..+..++++++++.. +..+.+ +|... +..+.. .+. +.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 2223334446788888864 457888 88874 333321 111 1123443 3455566788888888876
Q ss_pred ----CceeEE----EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCC-----------CCee
Q 011916 324 ----QQPTLR----LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDTG-----------SQVC 382 (475)
Q Consensus 324 ----~~~~~~----~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~~-----------~~v~ 382 (475)
++.... +.-...+. + .+++..++.+. . +.+.+.|+.+.. .+..+... ....
T Consensus 196 ~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 196 PAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 332211 11112222 3 55556555543 5 899999986542 22322211 1122
Q ss_pred EEEEcCCCCeEEEEEe-c-C-----CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCC
Q 011916 383 NLAWSKNVNELVSTHG-Y-S-----QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g-~-~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~ 453 (475)
.+.++++++.++++.. . . .+.+.++|..+++.+..+.... ...+|+|++||+ .+++.. .+++|.++|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2789999999988433 1 1 2356699999999988886443 688999999998 566666 599999999999
Q ss_pred CCCCCCcccCCcccccc
Q 011916 454 SLKAPALVKDTSLWSLG 470 (475)
Q Consensus 454 ~~~~~~~~~~~~v~s~~ 470 (475)
.+....+.-....|.+.
T Consensus 347 ~kvv~~I~vg~~P~~i~ 363 (368)
T 1mda_H 347 DQDQSSVELDKGPESLS 363 (368)
T ss_dssp CEEEEECCCCSCCCEEE
T ss_pred CcEEEEEECCCCCCEEE
Confidence 88877766555566554
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=5.7e-09 Score=100.91 Aligned_cols=214 Identities=9% Similarity=-0.023 Sum_probs=143.4
Q ss_pred eeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.....|+++ .++.+.. ++.|++|+..+++.... . ....+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 456789884 4555554 78999999998876443 2 24679999999999876654 44 4999999887754332
Q ss_pred cC----CCCceEEEEeC--CCEEEEEeC------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCC
Q 011916 248 GG----HQTRAGVLAWN--SRILSSGSR------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDN 314 (475)
Q Consensus 248 ~~----h~~~v~~l~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg 314 (475)
.. ....+..++++ ++++++... .+.|..++ .+.. ..+..+.....+++|+++++.|+.+ ..++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 12367888885 565554432 23455555 3332 2233344567899999999877655 4568
Q ss_pred cEEEEECC--CC-ce-----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEE
Q 011916 315 QLLVWNQH--SQ-QP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLA 385 (475)
Q Consensus 315 ~I~iwd~~--~~-~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~ 385 (475)
.|.+||+. ++ .. ...+......+..+++.++|..++++. .++.|..||. +++.+..+... ..+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~---~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe---CCCEEEEECC-CCCEEEEEECCCCCcEEEE
Confidence 99999986 55 32 222222345678899999998544443 3688999998 67777777544 4699999
Q ss_pred Ec-CCCCeEEEEE
Q 011916 386 WS-KNVNELVSTH 397 (475)
Q Consensus 386 ~s-~~~~~l~~~~ 397 (475)
|. ++++.|++++
T Consensus 278 f~g~d~~~L~vt~ 290 (326)
T 2ghs_A 278 FIGPDASRLLVTS 290 (326)
T ss_dssp EESTTSCEEEEEE
T ss_pred EecCCCCEEEEEe
Confidence 98 8888887753
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.29 E-value=3.1e-09 Score=104.66 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=169.3
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR 253 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 253 (475)
+....+.+++++.++.|+.+|..+++..-....... ....... .+..+++++.+|.|..+|..+++.+..+......
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 333456778888899999999999997765554211 1111112 2457888999999999999999988877643322
Q ss_pred e-----EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC----CEE---EEEEcC--CCCEEEEEeCCCcEEEE
Q 011916 254 A-----GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS----EVC---GLKWSH--DDRELASGGNDNQLLVW 319 (475)
Q Consensus 254 v-----~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~---~l~~s~--~~~~lasg~~Dg~I~iw 319 (475)
. ......+..++.+..++.|..+|... ++.+-....... ++. .+.-.| .+..++.++.++.|..+
T Consensus 176 ~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 176 LSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ---CCCCCCEEETTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eeecCCCCcEEECCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 1 22233467788889999999999973 444333321110 000 011111 34678888889999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CC-CCeeEEEEcCCCCeEEEEE
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TG-SQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~-~~v~~l~~s~~~~~l~~~~ 397 (475)
|..+++.+..... .....+... +..+++.. .++.|..+|..+|+.+.... .. ..+..... .+..|++
T Consensus 255 d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v-- 323 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV-- 323 (376)
T ss_dssp ETTTCCEEEEECC--CCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE--
T ss_pred ECCCCcEEeeccC--CCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE--
Confidence 9999988776543 233444443 44455543 68999999999999887765 22 22333333 2456777
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEE-EEECCCCCEEEEEeCCCCEEEEe
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+..+|.|+++|..+++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 324 ~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 678899999999999988777653333322 222 245788899999999986
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=4.6e-10 Score=119.76 Aligned_cols=277 Identities=9% Similarity=0.050 Sum_probs=181.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc---------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS---------V-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~---------V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+.+|..+|+..=..+...... + ..+.. ++..|++++.||.|..+|..+++.+..+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 456666668899999999999766654322110 0 11222 35678999999999999999999988776
Q ss_pred CC--CC---ceE-EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecC--c-----------------------
Q 011916 249 GH--QT---RAG-VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAG--H----------------------- 291 (475)
Q Consensus 249 ~h--~~---~v~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~--h----------------------- 291 (475)
.. .. .+. +....+..++.++ .+|.|..||.++ ++.+-.+.. +
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCcccccccccccccccccCCcee
Confidence 42 11 111 1112234444443 378999999984 444433321 0
Q ss_pred ------cCCEEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEec--cc-------cce
Q 011916 292 ------KSEVCGLKWSHDDRELASGGNDNQ-------------------LLVWNQHSQQPTLRLTE--HT-------AAV 337 (475)
Q Consensus 292 ------~~~V~~l~~s~~~~~lasg~~Dg~-------------------I~iwd~~~~~~~~~~~~--h~-------~~v 337 (475)
......+.+++++..++.+..++. |..+|.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 011125778888889999887763 99999999999887764 21 111
Q ss_pred eEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC------------------------------------
Q 011916 338 KAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS------------------------------------ 379 (475)
Q Consensus 338 ~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~------------------------------------ 379 (475)
.......+|+ .+++.+ +.+|.++++|..+|+.+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQA--PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp EEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred EEEeeccCCcEEEEEEEE--CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 1112222443 245554 489999999999999885432111
Q ss_pred ----CeeEEEEcCCCCeEEEEEec-------------------------------------------CCCeEEEEECCCC
Q 011916 380 ----QVCNLAWSKNVNELVSTHGY-------------------------------------------SQNQIMVWKYPSM 412 (475)
Q Consensus 380 ----~v~~l~~s~~~~~l~~~~g~-------------------------------------------~dg~I~iwd~~~~ 412 (475)
.-..++++|+...+++.... .+|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 11236888888887763221 0378999999999
Q ss_pred ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+.+..+..+. .+..-.+...+.+++.++.||.|+.||..+++......
T Consensus 466 ~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 466 QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 9988876543 23333555678899999999999999999998775543
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=4.7e-10 Score=120.04 Aligned_cols=250 Identities=14% Similarity=0.075 Sum_probs=165.3
Q ss_pred CceeccCCCCC--CCCceeEEecCCC-CEEEEEc--C----CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQ--DDFYLNLVDWSSQ-NVLAVGL--G----TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~--~d~~v~~l~ws~~-~~la~~~--~----~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
++.+||...+. ..+.+..++|||+ +.+|.+. + ..|++||+.+++...... . ......++|+ ||+.|+.
T Consensus 114 ~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-~~k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 114 AEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-DVKFSGISWL-GNEGFFY 190 (693)
T ss_dssp CEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-EEESCCCEEE-TTTEEEE
T ss_pred cEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C-CceeccEEEe-CCCEEEE
Confidence 34455543333 3346788899998 5666443 2 369999999998765421 1 1113578899 9999999
Q ss_pred EeCCCe-------------EEEEECCCCee----eEEecC-CCCceEEEEe--CCCEEEEEe----CCCcEEEEECCCCC
Q 011916 227 GTNLGQ-------------VQVWDGTQCKR----VRTFGG-HQTRAGVLAW--NSRILSSGS----RDRNILQHDLRVSS 282 (475)
Q Consensus 227 g~~dg~-------------v~iwd~~~~~~----~~~~~~-h~~~v~~l~~--~~~~l~sgs----~dg~I~iwd~~~~~ 282 (475)
++.+.. |++|++.+... +..... |...+..+.| ++++|+... .+..|.++|+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 988743 99999887542 323333 4556777888 467665433 23589999997554
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--eEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGN-D---NQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D---g~I~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.....+..+....... |+++|..|+..++ + +.|.++|+.++.. ...+..|...+. .|++++..|+++..
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-- 345 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-- 345 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE--
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE--
Confidence 3455566666655555 6666666655443 3 5799999987654 345666666655 89999998888764
Q ss_pred CCC--eEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q 011916 357 ADR--CIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGY--SQNQIMVWKYPSMAK 414 (475)
Q Consensus 357 ~d~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~ 414 (475)
.++ .|++||+..+ ....+. ....+..+.++++++.++....+ .-+.|+.||+.+++.
T Consensus 346 ~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 346 VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 444 6899998754 444443 33457778888899888874222 237899999987754
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.27 E-value=6.6e-14 Score=138.38 Aligned_cols=260 Identities=12% Similarity=0.024 Sum_probs=144.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-e-E
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-A-G 255 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v-~ 255 (475)
.+.+++++.++.|+.||..+|+..-.... +.+.+..+..++..+++++.||.|+.||.++++.+..+..+... + .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 34677777899999999999998766653 34555556667888888889999999999999887766543211 1 1
Q ss_pred EEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 256 VLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 256 ~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
.... .+..+++|+.|+.|..||.+ .++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~-tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLL-TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEecCCEEEEEeCCCEEEEEECC-CCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 1112 45677888889999999998 455554444433 23456788899999999999999999998876654322
Q ss_pred cceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 335 AAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 335 ~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
....++.++. ..+++.. .|+.|+.||..+|+.+......+++.. ..+++++...+......++.++.+|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEEC---CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehh
Confidence 2333444432 3355533 799999999999999988887777654 334445432210000012344555554
Q ss_pred CCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 411 SMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 411 ~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+++ .+..+... ..+.... -.+..|+.++.||.|+.++...
T Consensus 236 tG~~~~~~~W~~~~~-~~~~sp~--~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP-KETEAKS--KLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHHHHTSCCCCC-CHHHHHH--HSEEEECBEECSSCEECCEEEE
T ss_pred cCCcccceeeeeccC-ccccccc--cccceEEEecccCCEEecCccc
Confidence 444 22222111 1110000 1244677888899998888764
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.8e-09 Score=105.13 Aligned_cols=232 Identities=13% Similarity=-0.019 Sum_probs=151.2
Q ss_pred CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEe-------cCCCCceEEEEeCC-CEEEEEe-C-----CCcE
Q 011916 210 DSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVRTF-------GGHQTRAGVLAWNS-RILSSGS-R-----DRNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~-~~l~sgs-~-----dg~I 273 (475)
..+..|+++++|+++++... ++.++||.+.+++.. .+ ..|-..+..+++++ ..|.... . ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 343555555455433 22 13456889999964 3444443 2 5789
Q ss_pred EEEECCCCCccEEEecC------ccCCEEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCceeEEEeccc---------
Q 011916 274 LQHDLRVSSDYICKLAG------HKSEVCGLKWSHDDREL-ASGG---NDNQLLVWNQHSQQPTLRLTEHT--------- 334 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l-asg~---~Dg~I~iwd~~~~~~~~~~~~h~--------- 334 (475)
.+||+. .++.+..+.. +...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~-tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTL-NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETT-TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECC-CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999997 4444444432 22356889999865454 4444 57899999998776555443221
Q ss_pred --------------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECC---CCc--------eeeeecCCCCeeE
Q 011916 335 --------------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS---NGH--------QLNSVDTGSQVCN 383 (475)
Q Consensus 335 --------------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~---~~~--------~~~~~~~~~~v~~ 383 (475)
..+..|+|+|+++.|+++.. ....|..++.. .+. .+...........
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 23588999999998887653 44566666532 111 0111222345678
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
++++++|..+++ ...++.|.+||..+++....... +...+.+++|.++|+++++.+..+.+.
T Consensus 253 ia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 253 ISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp EEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred EEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 999999987777 67789999999855654333322 245689999999999888887655443
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=2.6e-09 Score=113.67 Aligned_cols=273 Identities=10% Similarity=0.068 Sum_probs=182.2
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCC-CC---CcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEE
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLG-PG---DSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~~---~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~ 246 (475)
..+.+++++.++.|+.+|..+|+..-..... .. ..+.+--.. .+..+++++. +|.|+.||..+++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3456777777999999999999987766543 10 112111011 2445666654 68999999999999887
Q ss_pred ecCCCCc--------------------------------eEEEEe--CCCEEEEEeCCC-------------------cE
Q 011916 247 FGGHQTR--------------------------------AGVLAW--NSRILSSGSRDR-------------------NI 273 (475)
Q Consensus 247 ~~~h~~~--------------------------------v~~l~~--~~~~l~sgs~dg-------------------~I 273 (475)
+...... ...+++ .+.+++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7532211 013444 457888777664 48
Q ss_pred EEEECCCCCccEEEecC--cc-------CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEecccc------
Q 011916 274 LQHDLRVSSDYICKLAG--HK-------SEVCGLKWSHDD---RELASGGNDNQLLVWNQHSQQPTLRLTEHTA------ 335 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~------ 335 (475)
..+|.++ ++.+-.+.. |. ....-+....+| ..++.++.+|.|+++|..+++.+..+.....
T Consensus 286 ~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 286 VALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 8999984 444433332 21 122223333467 6889999999999999999998876642210
Q ss_pred -----ce------------------------eEEEECCCCCcEEEEec--------------C-----------------
Q 011916 336 -----AV------------------------KAIAWSPHQSSLLASGG--------------G----------------- 355 (475)
Q Consensus 336 -----~v------------------------~~l~~sp~~~~ll~sg~--------------G----------------- 355 (475)
.+ ..++++|+...+++... |
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 01 15688888875655321 0
Q ss_pred ---------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cce
Q 011916 356 ---------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRV 425 (475)
Q Consensus 356 ---------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V 425 (475)
...+.|..||+.+++.+..+.++..+....+...+..+++ +..+|.+++||..+++.+..+.... ...
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 0127899999999999999887776666677788888888 7889999999999999999887433 222
Q ss_pred EEEEECCCCCEEE-EEeC----------------CCCEEEEecCC
Q 011916 426 LYLATSPDGQTIV-TGAG----------------DETLRFWNVFP 453 (475)
Q Consensus 426 ~~l~~spdg~~l~-s~s~----------------Dg~I~iW~~~~ 453 (475)
.-+.|..+|+.++ +.+. .+.|.+|.+..
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 3455667887544 3333 36788888874
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=6.1e-10 Score=107.16 Aligned_cols=263 Identities=10% Similarity=0.047 Sum_probs=171.9
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
..+....+..+.++..+ |+.+|. +++........ ........+. +..|.+++.+|.|..+|.. ++.......+.
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~ 136 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK 136 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEECC-CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC
Confidence 34444445444455555 888886 55432222211 1112222333 5568889989999999988 77776666555
Q ss_pred CceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 252 TRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 252 ~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
..+.++..+ +..|..++.++.|..+|.. +............+.++...+++.+++ ++ +.|..+| .+++.+..+
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence 556666665 5667888888999999987 444444444455677777777776544 44 7899999 777777777
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-CeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
......+.++...+++. +++.. .++.|..+|. +++.+..+.... .+..+.+.+++. |.+ +..+|.|..+|.
T Consensus 211 ~~~~~~~~~~~~~~~g~-l~v~t---~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~ggl~~~d~ 282 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGT-IYVTS---LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYF--GSYDGHLYAINP 282 (330)
T ss_dssp CCSSCCCSCCEECTTSC-EEEEE---TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTCEEEEECT
T ss_pred ccCCcceeceEECCCCe-EEEEc---CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEE--ecCCCCEEEECC
Confidence 66667788999998886 44432 5788888884 666666654433 344556665664 444 567889999995
Q ss_pred CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++.+..+......+.++....+|. |..++.+|.+++......+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred -CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 7777777665566677888888886 55588999999988765543
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=1.4e-08 Score=100.52 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=163.2
Q ss_pred eEEEEECCC-----CcEEEEeeCCC-CCcEEEEEE-----------c--CCCCEEEEE-eCCCeEEEEECCCC----eee
Q 011916 189 CVYLWTASN-----SKVTRLCDLGP-GDSVCSVQW-----------T--REGSYISVG-TNLGQVQVWDGTQC----KRV 244 (475)
Q Consensus 189 ~V~lw~~~~-----~~~~~~~~~~~-~~~V~~v~~-----------s--pdg~~la~g-~~dg~v~iwd~~~~----~~~ 244 (475)
.|.+.|+.. ++++..+.+.. .+....+.| + .++++|++. ..++.|.|+|+.+. +.+
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 455666665 67777776643 234555556 6 778877764 45788999999765 666
Q ss_pred EEec------C-CCCceEEEEe--CCCEEEEEeCC------CcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCCE
Q 011916 245 RTFG------G-HQTRAGVLAW--NSRILSSGSRD------RNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDRE 306 (475)
Q Consensus 245 ~~~~------~-h~~~v~~l~~--~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~~ 306 (475)
++++ . ....-..+.. ++ +++++..+ +.|.+.|.. ..+.+..+.... ..-..+-|+|+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccCCCCccccceEEECCCCCE
Confidence 6663 0 0111222222 45 66665554 789999988 556666665322 22345788999998
Q ss_pred EEEEe-------------------CCCcEEEEECCCCceeEEEecc--ccceeEEEE--CCCCCcEEEEec---CCCCCe
Q 011916 307 LASGG-------------------NDNQLLVWNQHSQQPTLRLTEH--TAAVKAIAW--SPHQSSLLASGG---GTADRC 360 (475)
Q Consensus 307 lasg~-------------------~Dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~~--sp~~~~ll~sg~---Gs~d~~ 360 (475)
+++.. .+.+|.+||+.+++.+.++... ......|.| +|++++.++++. -..+++
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~ 281 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS 281 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce
Confidence 88874 3689999999998877777642 134455655 999998777641 003567
Q ss_pred EEEEECCCCce--eeee--cC-----------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceEE
Q 011916 361 IRFWNTSNGHQ--LNSV--DT-----------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS---MAKVS 416 (475)
Q Consensus 361 I~iwd~~~~~~--~~~~--~~-----------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---~~~~~ 416 (475)
|.+|....++. ...+ .. ......+.+++||++|+++ ....+.|.+||+.. .+.+.
T Consensus 282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg~d~VavfdV~d~~~~~lv~ 360 (462)
T 2ece_A 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWGIGEVRQYDISNPFKPVLTG 360 (462)
T ss_dssp EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETTTTEEEEEECSSTTSCEEEE
T ss_pred EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEEE
Confidence 87766544321 1111 10 3457889999999999987 44678999999852 34555
Q ss_pred EecCCC--------------cceEEEEECCCCCEEEEEe
Q 011916 417 TLTGHS--------------LRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 417 ~l~~h~--------------~~V~~l~~spdg~~l~s~s 441 (475)
.+.... +....++++|||++|+++.
T Consensus 361 ~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 361 KVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 553220 1357899999999999988
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=2.7e-08 Score=93.04 Aligned_cols=246 Identities=7% Similarity=-0.001 Sum_probs=160.3
Q ss_pred EEEEcCCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 182 LAVGLGTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
|..+..+.|+.+++...... ..+. .....+.+++|++++..|+++. .++.|.+++.........+........
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~ 82 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence 33444568888888765431 1221 1124578999999766565554 568999999876654444433334667
Q ss_pred EEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEE
Q 011916 256 VLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 256 ~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~ 329 (475)
.++++ +..| ++-...+.|.++++.... ..............++++|++..|..+.. .+.|..+++.... ...
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~ 160 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI 160 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEE
Confidence 77774 3444 455567889999987322 22222222256789999997666655554 3688888886433 222
Q ss_pred Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 330 LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 330 ~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
+. ..-.....+++++++..|+++.. ..+.|..+|.........+........++.. +..|+++ ....+.|.++|
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~~d 235 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMD 235 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEEEe
Confidence 22 23345789999999888888765 6789999999765444444444455667654 5566654 55678999999
Q ss_pred CCCCceEEEecCCC-cceEEEEECCCCC
Q 011916 409 YPSMAKVSTLTGHS-LRVLYLATSPDGQ 435 (475)
Q Consensus 409 ~~~~~~~~~l~~h~-~~V~~l~~spdg~ 435 (475)
..+++.+..+.... ....++++.|++.
T Consensus 236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCCceEEEccccccccceeeecCccC
Confidence 99999888886443 3477888888764
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.4e-09 Score=116.10 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=168.4
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCC-CCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCeeeEEe
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLG-PGDSVCSVQWTR---EGSYISVGT------NLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~~~~V~~v~~sp---dg~~la~g~------~dg~v~iwd~~~~~~~~~~ 247 (475)
.+.+++++.++.|+.+|..+|+..-..... +......+..+| ++ .+++++ .+|.|..||..+++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 356666777999999999999987665543 211111111122 44 455554 2689999999999998776
Q ss_pred cCCC--C-----------------------------ceEEEEeC--CCEEEEEeCCCc-------------------EEE
Q 011916 248 GGHQ--T-----------------------------RAGVLAWN--SRILSSGSRDRN-------------------ILQ 275 (475)
Q Consensus 248 ~~h~--~-----------------------------~v~~l~~~--~~~l~sgs~dg~-------------------I~i 275 (475)
.... . ....++++ ..+++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 0 00134553 578888887764 999
Q ss_pred EECCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc-c-------
Q 011916 276 HDLRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT-A------- 335 (475)
Q Consensus 276 wd~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-~------- 335 (475)
+|.++ ++.+-.+.. |. ..+.......+|+ .++.++.+|.++++|.++++.+....... .
T Consensus 280 lD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 280 VNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99984 444444332 21 1222222223565 78899999999999999999875432110 0
Q ss_pred -------------------------------ceeEEEECCCCCcEEEEec------------------------C-----
Q 011916 336 -------------------------------AVKAIAWSPHQSSLLASGG------------------------G----- 355 (475)
Q Consensus 336 -------------------------------~v~~l~~sp~~~~ll~sg~------------------------G----- 355 (475)
.-..++++|+...+++... |
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0112678888775554310 0
Q ss_pred -------------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 356 -------------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 356 -------------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
..++.|+.||+.+|+.+..+..+.....-.+...+..+++ |+.||.|+.||..+++.+.+++...
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeeeCCC
Confidence 0148899999999999998877666655567778888888 7899999999999999998887543
Q ss_pred cc-eEEEEECCCCCEEEE
Q 011916 423 LR-VLYLATSPDGQTIVT 439 (475)
Q Consensus 423 ~~-V~~l~~spdg~~l~s 439 (475)
+. ..-+.|..||+..++
T Consensus 517 ~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 22 234666778875443
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.20 E-value=5.3e-10 Score=109.61 Aligned_cols=248 Identities=8% Similarity=-0.042 Sum_probs=164.6
Q ss_pred EEecCCC--CEEEEE----------cCCeEEEEECCCCcEEEEeeCCC------CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ--NVLAVG----------LGTCVYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~--~~la~~----------~~~~V~lw~~~~~~~~~~~~~~~------~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++++ .++.+. .++.|.+||..+++....+.++. ......++++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 3667775 344443 26789999999999998886541 123558899999999999875 467
Q ss_pred EEE--EECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCC----CCccEEE----ecCccCCEEEEEEc
Q 011916 233 VQV--WDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRV----SSDYICK----LAGHKSEVCGLKWS 301 (475)
Q Consensus 233 v~i--wd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~----~~~~~~~----~~~h~~~V~~l~~s 301 (475)
|.+ +|+.+ +..+... +. ..+..+ ...+++.+.|+.+.+.|+.. .++.... +.-...+. . .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 4444321 11 112233 35666777889998888874 2322210 11112233 3 5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce--eEEEec----------cccceeEEEECCCCCcEEEEecCC-C-----CCeEEE
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQP--TLRLTE----------HTAAVKAIAWSPHQSSLLASGGGT-A-----DRCIRF 363 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~~~ll~sg~Gs-~-----d~~I~i 363 (475)
+++..++..+. +.|.+.|+..... +..+.- .......++++|+++.++++.... . ++.+.+
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 66666666666 9999999875432 111110 111122378999999888763200 1 235669
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
+|+.+++.+..+..+.....+.|+++|+.++++....++.|.++|+.+++.+.++..... ...+++.
T Consensus 299 iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 299 VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 999999999999887789999999999977776443689999999999999999875543 3455554
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.20 E-value=6.6e-09 Score=99.32 Aligned_cols=224 Identities=12% Similarity=0.111 Sum_probs=147.1
Q ss_pred ceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.....|+++ + ++.++. ++.|+.|+. +++..... .+...+.+++++++|+++++...++.|.+|+.. ++....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 4566889886 4 555554 789999998 45543333 345678999999999966665566889999976 543322
Q ss_pred ecCC----CCceEEEEeC--CCEEEE----EeC-------------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 247 FGGH----QTRAGVLAWN--SRILSS----GSR-------------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 247 ~~~h----~~~v~~l~~~--~~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.... ...+..++++ |+++++ |.. .+.|..+|.. .+...... .......++|+||
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~~--~~~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRMA--DLDHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEEE--EESSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEEe--cCCCCcceEEcCC
Confidence 2111 1345667774 566665 332 2456666664 23332222 4456789999999
Q ss_pred CCEEEEEeCC------CcEEEEECCCCcee--EEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 304 DRELASGGND------NQLLVWNQHSQQPT--LRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 304 ~~~lasg~~D------g~I~iwd~~~~~~~--~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
++.|+.+... +.|++|++..+... ..+ .........+++.++|. |.++. .+.|.+|+. +++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~----~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS----GTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC----SSEEEEECT-TSCEEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec----CCcEEEECC-CCCEEEE
Confidence 9988887665 68999998765411 111 11234456899999998 55532 335999998 6777777
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.....+.+++|.++++.|+++ .. +.|+.+++
T Consensus 273 ~~~~~~~~~~~f~~d~~~L~it--~~-~~l~~~~~ 304 (305)
T 3dr2_A 273 IPTPGTASNCTFDQAQQRLFIT--GG-PCLWMLPL 304 (305)
T ss_dssp EECSSCCCEEEECTTSCEEEEE--ET-TEEEEEEC
T ss_pred EECCCceeEEEEeCCCCEEEEE--cC-CeEEEEEC
Confidence 7766678999999999988883 33 44554443
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=120.99 Aligned_cols=203 Identities=13% Similarity=0.014 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-CEE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-EVC 296 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 296 (475)
++..+++++.||.|+.||..+++.+..+.. ..+.+..+ ++..+++++.||.|..||..+ ++.+.....+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 578899999999999999999999988876 33333222 456788888999999999973 443333332211 110
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 -GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 -~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+..+. ++..+++|+.|+.|+.||..+++.+..+..+. ...++|++..+++.+ .|+.|+.||..+|+.+..+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~---~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR---TEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEE---EEEEEECCCSSSSSCCCEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe---cCCEEEEEECCCCCEEEeE
Confidence 00111 34577888889999999999999887776543 245567776555533 6899999999999987665
Q ss_pred cCCCCeeEEEEcCCC---CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCE
Q 011916 376 DTGSQVCNLAWSKNV---NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT 436 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 436 (475)
.... .....+..+. ..+++ +..+|.|+.||..+++.+.........+....++.+|..
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 157 TYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred eccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 4221 1223333332 45666 668999999999999988877643332333455666653
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.15 E-value=2.9e-08 Score=92.31 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=145.5
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCC-CCceEEEEeCCCEE-EEEeCCCcE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGH-QTRAGVLAWNSRIL-SSGSRDRNI 273 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~l-~sgs~dg~I 273 (475)
+++..+..+.......+.|++++ .|++++. ++.|.++|+.+++.+..+.-. ......++++++.| ++...++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 34555543433457899999986 4555542 579999999999999887632 22334567766555 445568899
Q ss_pred EEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc-----cceeEEEECCCCCc
Q 011916 274 LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT-----AAVKAIAWSPHQSS 348 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~ 348 (475)
.++|.. ..+.+..+..-... ...+++||+.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++ .
T Consensus 89 ~viD~~-t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 89 FIYDRR-TLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEETT-TTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEECC-CCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 999998 55666665432122 23355678877777778999999999988777665321 136678888 66 4
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+++... .++.|.+.|..+++.+..+... .....++|+|+++.++++ +...+.|++.++...
T Consensus 164 lyvn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred EEEecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 766654 6889999999999999988653 356899999999988886 667788888887543
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=1.5e-09 Score=110.89 Aligned_cols=244 Identities=10% Similarity=0.051 Sum_probs=175.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEECCCCeeeEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQW-T-REGSYISVGT------------------NLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~-s-pdg~~la~g~------------------~dg~v~iwd~~~~~~~~~ 246 (475)
++.|.+.|+.+.++.+++++........+++ + |+++++++++ .++.|.++|.++.+.+.+
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q 190 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ 190 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE
Confidence 5679999999999999887766677889998 5 9999999885 246899999999998888
Q ss_pred ecC-CCCceEEEEeCCCEEEEEeCCC---------------cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE
Q 011916 247 FGG-HQTRAGVLAWNSRILSSGSRDR---------------NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 247 ~~~-h~~~v~~l~~~~~~l~sgs~dg---------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg 310 (475)
+.- ....-..+..+++++++.+.+. .|.+.|..... .+.++|+++..
T Consensus 191 I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------------~~v~~Gk~~~i- 253 (595)
T 1fwx_A 191 VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------------KAIAAGDYQEL- 253 (595)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH----------------HHHHHTCSEEE-
T ss_pred EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee----------------EeccCCCeeEE-
Confidence 762 2333444555788888887654 23333332100 12234443333
Q ss_pred eCCCcEEEEECCC--Cce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------------eeeee
Q 011916 311 GNDNQLLVWNQHS--QQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------QLNSV 375 (475)
Q Consensus 311 ~~Dg~I~iwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------~~~~~ 375 (475)
+.|.|.|.++ ++. +..+.. .....++.++|||+++++++. .+.+|.++|+.+.+ .+..+
T Consensus 254 ---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 254 ---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp ---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred ---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEECcccccccccccCcccceEEEc
Confidence 5599999998 555 444433 345688999999999999976 89999999998653 45666
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEecCCCcce-----EEEEECCCCCEEEEE
Q 011916 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS----------MAKVSTLTGHSLRV-----LYLATSPDGQTIVTG 440 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~spdg~~l~s~ 440 (475)
..+.....++|+++| .++++ ..-+++|.+||+.. .+.+..+..|-.+- .++.++|||++|+++
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred CCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 778889999999999 65554 77899999999977 56777777665432 122458999999987
Q ss_pred eC---CCCE----------EEEecCCCC
Q 011916 441 AG---DETL----------RFWNVFPSL 455 (475)
Q Consensus 441 s~---Dg~I----------~iW~~~~~~ 455 (475)
.. |..+ .++|+..++
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCCccccccCCCCCCCcceEEEcCCCc
Confidence 54 4432 788885433
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.11 E-value=4.4e-08 Score=91.08 Aligned_cols=195 Identities=9% Similarity=0.019 Sum_probs=142.4
Q ss_pred CceeEEecCCCC-EEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQN-VLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~~-~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~ 243 (475)
.+..-+.|+++. ++.++. ++.|.+.|..++++...+.++.......+++. |+.|++++ .++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 456778999854 444432 47999999999999998876544444455554 55565555 478999999999999
Q ss_pred eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
+.++......-..+++++..|+++..++.|.++|..+ .+.+..+.-.. ..+..+.|. +|...+....++.|.+
T Consensus 99 ~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 99 IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 9988633233356888887777777789999999974 44444443211 246788888 7765555556789999
Q ss_pred EECCCCceeEEEeccc-------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 319 WNQHSQQPTLRLTEHT-------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~-------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.|..+++.+..+.-.. .....|+|+|+++.+++++. ..+.+...++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 9999999888776321 35589999999999999986 7888888887654
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=9e-10 Score=105.95 Aligned_cols=251 Identities=14% Similarity=0.087 Sum_probs=167.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
+.+.+++.++.|+.|| .+++....... ....+.++...++|. |.+++.+ |..+|. +++.+..+...........
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 3566666688899999 88876544432 234456777766665 5666655 888885 6655544443333233333
Q ss_pred eCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccccee
Q 011916 259 WNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 259 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
..+..|..++.++.|..+|.. +........+...+.++...+++. |..++.++.|..+|.. ++.+..+......+.
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred EECCEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 347778889999999999987 334444444455566667776775 6667788999999998 777777766566778
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
++...+++. +++. . +.|..+| .+++.+..... ...+.++...++|...+ +..++.|..+| .+++.+..
T Consensus 181 ~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v---~t~~~gl~~~~-~~g~~~~~ 249 (330)
T 3hxj_A 181 AASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV---TSLDGHLYAIN-PDGTEKWR 249 (330)
T ss_dssp CCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE---EETTTEEEEEC-TTSCEEEE
T ss_pred eeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE---EcCCCeEEEEC-CCCCEeEE
Confidence 888887877 4442 2 8899999 77777766653 35678888888876555 44678888887 46666666
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+......+..+.+.+++. |..++.+|.|..+|.
T Consensus 250 ~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred eeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 655544455566666664 566777878888885
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=6.8e-08 Score=100.64 Aligned_cols=277 Identities=9% Similarity=0.003 Sum_probs=173.6
Q ss_pred CCEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCCcE----------EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 179 QNVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGDSV----------CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~~V----------~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.+++++. ++.|+-+|. .+++..=.........+ ..++. ++..+++++.|+.|..+|..+++.+..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 44555566 688999999 89987655543221110 11222 356788899999999999999999877
Q ss_pred ecCCCC----ceE-EEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCccCC---------------------
Q 011916 247 FGGHQT----RAG-VLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGHKSE--------------------- 294 (475)
Q Consensus 247 ~~~h~~----~v~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~--------------------- 294 (475)
+..... .+. .....+..+++++. ++.|..+|.++ ++.+-.+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~ 219 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCC-CcEEEEEccCCCccccccCccccccccccccccc
Confidence 653220 111 11123455666654 78999999984 4444333221100
Q ss_pred -----------------EEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEecc--cc----
Q 011916 295 -----------------VCGLKWSHDDRELASGGND----------------NQLLVWNQHSQQPTLRLTEH--TA---- 335 (475)
Q Consensus 295 -----------------V~~l~~s~~~~~lasg~~D----------------g~I~iwd~~~~~~~~~~~~h--~~---- 335 (475)
...+++.++...++.+..+ +.|..+|.++++.+..+... ..
T Consensus 220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~ 299 (571)
T 2ad6_A 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence 0134566666677666532 25999999999988877532 11
Q ss_pred ceeE---EEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC--------------Ce---------------
Q 011916 336 AVKA---IAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--------------QV--------------- 381 (475)
Q Consensus 336 ~v~~---l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--------------~v--------------- 381 (475)
.+.. +....+|+ .+++.+. .+|.++++|..+|+.+..+.... ++
T Consensus 300 ~~~~p~l~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 300 GVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cCCCCEEEecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 1111 22223564 3555544 79999999999999887764332 11
Q ss_pred -----------eEEEEcCCCCeEEEEEe-----------------------------------cCCCeEEEEECCCCceE
Q 011916 382 -----------CNLAWSKNVNELVSTHG-----------------------------------YSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 382 -----------~~l~~s~~~~~l~~~~g-----------------------------------~~dg~I~iwd~~~~~~~ 415 (475)
..++++|+...+++.+. ..+|.|..||..+++.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 23578888777776421 13578999999999988
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.++... ..+....+...+..++.++.||.|+.||..+++......
T Consensus 458 W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 458 WTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 776532 222222223346677789999999999999888765543
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=2.5e-08 Score=97.01 Aligned_cols=209 Identities=11% Similarity=0.037 Sum_probs=141.7
Q ss_pred CceeEEecCCC-CEEEEEc------CCeEEEEECCCCcEEEEeeCC-----CCCcEEEEEEcCCCCEE-EEEe---CCCe
Q 011916 169 FYLNLVDWSSQ-NVLAVGL------GTCVYLWTASNSKVTRLCDLG-----PGDSVCSVQWTREGSYI-SVGT---NLGQ 232 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~------~~~V~lw~~~~~~~~~~~~~~-----~~~~V~~v~~spdg~~l-a~g~---~dg~ 232 (475)
..+..+.++++ +++++.. +..|.+||..++++...+.+. +...+..+++++++..+ ++.. .++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 45788999886 4555543 479999999999977776653 22456899999865555 4444 5789
Q ss_pred EEEEECCCCeeeEEecCCCCce---EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRA---GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
|.+||+.+++..+.+.+|.... ..+..++..+.+.+.++.+..|. ..+.+|+|+|+++.|++
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~ 211 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYL 211 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEE
Confidence 9999999998887776653211 23344666677777777775553 13678999999998888
Q ss_pred EeCCC-cEEEEECC---CCc-----ee--EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-
Q 011916 310 GGNDN-QLLVWNQH---SQQ-----PT--LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT- 377 (475)
Q Consensus 310 g~~Dg-~I~iwd~~---~~~-----~~--~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~- 377 (475)
+..++ .|+.++.. .+. .. ....++......++++++|. ++++.. .++.|.+||..+++.......
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~--~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDL--AHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEG--GGTEEEEEETTTTEEEEEEECG
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEcc--CCCeEEEEECCCCCEEEEEECC
Confidence 87765 55555532 111 00 01123444667899999987 666554 689999999866654333322
Q ss_pred -CCCeeEEEEcCCCCeEEE
Q 011916 378 -GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 378 -~~~v~~l~~s~~~~~l~~ 395 (475)
...+..++|.+++..+++
T Consensus 289 ~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp GGSCEEEEEECTTSCEEEE
T ss_pred ceecCCeeEECCCCcEEEE
Confidence 356889999998876666
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1.2e-07 Score=93.92 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=145.2
Q ss_pred EEEEEc-CCeEEEEECCCC----cEEEEee---C--C-CCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCee
Q 011916 181 VLAVGL-GTCVYLWTASNS----KVTRLCD---L--G-PGDSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKR 243 (475)
Q Consensus 181 ~la~~~-~~~V~lw~~~~~----~~~~~~~---~--~-~~~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~ 243 (475)
+++.+. ++.|+++|..+. ++.+.++ + . ....-..+...|+| +++++..+ |.|.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 444444 678999999766 6666662 1 0 11244567788999 66665555 7899999999999
Q ss_pred eEEecCCCC---ceEEEEe--CCCEEEEEe-------------------CCCcEEEEECCCCCccEEEecCc--cCCEEE
Q 011916 244 VRTFGGHQT---RAGVLAW--NSRILSSGS-------------------RDRNILQHDLRVSSDYICKLAGH--KSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~---~v~~l~~--~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~ 297 (475)
+.++..... .-..+.| +++.+++.. .+.+|.+||+.. .+.+..+..- ......
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCCCccce
Confidence 998873222 2334655 457777764 378999999984 5555555442 123455
Q ss_pred EEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eEEE--ecc----------------ccceeEEEECCCCCcE
Q 011916 298 LKW--SHDDRELASGG------NDNQLLVWNQHSQQP--TLRL--TEH----------------TAAVKAIAWSPHQSSL 349 (475)
Q Consensus 298 l~~--s~~~~~lasg~------~Dg~I~iwd~~~~~~--~~~~--~~h----------------~~~v~~l~~sp~~~~l 349 (475)
+.| +|+++++.+++ .+++|.+|....++. .+.+ ... ......|.+++||++|
T Consensus 256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 656 99999888877 456888776654431 1111 110 2457889999999999
Q ss_pred EEEecCCCCCeEEEEECCC---CceeeeecCCC---------------CeeEEEEcCCCCeEEEEE
Q 011916 350 LASGGGTADRCIRFWNTSN---GHQLNSVDTGS---------------QVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~---~~~~~~~~~~~---------------~v~~l~~s~~~~~l~~~~ 397 (475)
+++.- ..+.|.+||+.. .+.+..+..++ ....++++|+|++|+++.
T Consensus 336 YVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 336 YLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99976 678999999863 35566665542 358899999999999964
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=7.7e-08 Score=102.21 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=173.7
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTN------LGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~------dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++++.++.|+.+|..+|+..-............+.-+| .+..++++.. +|.|..+|..+++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 355666677999999999999987666542111000111111 2345666543 58999999999999887752
Q ss_pred C--C-C----------------------------ceEEEEeC--CCEEEEEeCCC-------------------cEEEEE
Q 011916 250 H--Q-T----------------------------RAGVLAWN--SRILSSGSRDR-------------------NILQHD 277 (475)
Q Consensus 250 h--~-~----------------------------~v~~l~~~--~~~l~sgs~dg-------------------~I~iwd 277 (475)
. . . ....++++ ..+++.+..++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 0 0 00124553 47888887766 388999
Q ss_pred CCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc-----------
Q 011916 278 LRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT----------- 334 (475)
Q Consensus 278 ~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~----------- 334 (475)
.+ .++.+-.+.. |. .+.....+..+|+ .++.++.+|.++++|..+++.+.......
T Consensus 277 ~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 277 PD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp TT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred CC-CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 88 4444443332 22 2333333333665 68889999999999999999875433211
Q ss_pred -cce------------------------eEEEECCCCCcEEEEe---------------------------------cCC
Q 011916 335 -AAV------------------------KAIAWSPHQSSLLASG---------------------------------GGT 356 (475)
Q Consensus 335 -~~v------------------------~~l~~sp~~~~ll~sg---------------------------------~Gs 356 (475)
.++ ..++++|+...+++.. ...
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000 1256777766444311 011
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce-EEEEECCCCC
Q 011916 357 ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV-LYLATSPDGQ 435 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~ 435 (475)
.++.|..||+.+|+.+.............+...+..+++ +..++.|+.||..+++.+..++...... .-+.+..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 348899999999999988876666555566667888888 7889999999999999998887543211 1233345666
Q ss_pred -EEEEEeC--------------------CCCEEEEecCCC
Q 011916 436 -TIVTGAG--------------------DETLRFWNVFPS 454 (475)
Q Consensus 436 -~l~s~s~--------------------Dg~I~iW~~~~~ 454 (475)
+++.++. .+.|.++.+...
T Consensus 514 ~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~ 553 (668)
T 1kv9_A 514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK 553 (668)
T ss_dssp EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred EEEEEEecCCCccccccccccccccCCCCCeEEEEEcCcc
Confidence 4554443 347888887653
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=1.1e-07 Score=101.08 Aligned_cols=276 Identities=9% Similarity=0.043 Sum_probs=177.4
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---------cE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---------SV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---------~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-+|..+|+..=..+..... .+ ..+.. .+..+++++.||.|..+|..+++.+..+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 45667777889999999999976655432110 00 11222 35678889999999999999999988776
Q ss_pred CCC----CceE-EEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCc--------------------------
Q 011916 249 GHQ----TRAG-VLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGH-------------------------- 291 (475)
Q Consensus 249 ~h~----~~v~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h-------------------------- 291 (475)
... ..+. .....+..++++.. +|.|..+|.++ ++.+-.+...
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCC-CcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 421 1111 11123445555543 58999999984 4444333210
Q ss_pred -----cCCEEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEec--cc-------ccee
Q 011916 292 -----KSEVCGLKWSHDDRELASGGNDN-------------------QLLVWNQHSQQPTLRLTE--HT-------AAVK 338 (475)
Q Consensus 292 -----~~~V~~l~~s~~~~~lasg~~Dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~v~ 338 (475)
......+++.++...++.+..++ .|..+|.++++.+..+.. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 01112467888888888887765 399999999999887764 22 2222
Q ss_pred EEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC-------------C-----------------------
Q 011916 339 AIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-------------Q----------------------- 380 (475)
Q Consensus 339 ~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-------------~----------------------- 380 (475)
...+..+++ .+++.+ +.+|.++++|..+|+.+....... +
T Consensus 304 ~~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred EEEeccCCcEEEEEEEE--CCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 222223454 245554 489999999999999884432111 0
Q ss_pred -eeEEEEcCCCCeEEEEEe----------------------------------cCCCeEEEEECCCCceEEEecCCCcce
Q 011916 381 -VCNLAWSKNVNELVSTHG----------------------------------YSQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 381 -v~~l~~s~~~~~l~~~~g----------------------------------~~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
-..++++|+...+++... ..+|.|..||..+++.+-....+. .+
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence 012677777776665211 123789999999999887765432 23
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
....+...+.+++.++.|+.|+.||..+++.....
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 33334446778999999999999999988876544
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.98 E-value=4e-07 Score=83.01 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=138.4
Q ss_pred CCceeccCCCCCCCCceeEEecCCCCEEEEEcC---CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCC
Q 011916 155 TPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLG---TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNL 230 (475)
Q Consensus 155 ~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~---~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~d 230 (475)
..+.++..--+....|..-+.|+++.++.++.. +.|..+|+.++++.....+.....-..+++ +++.|... -.+
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~ 84 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRN 84 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred cceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeC
Confidence 345555544455667788899988766555443 489999999999999887654322233444 34555544 457
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~ 305 (475)
+.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|.. ..+.+..+.-.. ..+..+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 899999999999999987433 346788888777777778999999988 444444443221 345677775 676
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecc-------------ccceeEEEECCCCCcEEEEe
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEH-------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~ll~sg 353 (475)
..+..-.++.|.+.|.++++.+..+.-. ....+.|||+|+++.|+++|
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6666656889999999999988776522 13458999999999999987
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.97 E-value=6.4e-07 Score=86.06 Aligned_cols=236 Identities=10% Similarity=-0.007 Sum_probs=151.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-------------------CCCceEEEEeC--CCEEEEEeC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-------------------HQTRAGVLAWN--SRILSSGSR 269 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~--~~~l~sgs~ 269 (475)
...+++|.++|++++++..++.|..|+..+++....... .......++++ ...|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 345788999999888899999999999876544321110 01246788886 456777766
Q ss_pred CCcEEEEECCCCCccEEEecC-----ccCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCce
Q 011916 270 DRNILQHDLRVSSDYICKLAG-----HKSEVCGLKWSH-DDRELASGGN-----------------DNQLLVWNQHSQQP 326 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~-~~~~lasg~~-----------------Dg~I~iwd~~~~~~ 326 (475)
.+.|..+|.. .+. +..+.. .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 100 ~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 100 YYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 6668888865 222 222211 113478899999 9987666432 36789999877654
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeee-cCCCCeeEEEEcCCCCeEEEEEe-----
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSV-DTGSQVCNLAWSKNVNELVSTHG----- 398 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~-~~~~~v~~l~~s~~~~~l~~~~g----- 398 (475)
.... ..-.....|+|+|+++.|+++.. ..+.|..|++.... ....+ ...+ ...+++.++|+.+++..+
T Consensus 178 ~~~~-~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLL-KELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEE-EEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEec-cCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 3222 22234578999999997777754 57899999987531 11111 2233 788999999987666422
Q ss_pred ---cCCCeEEEEECCCCceEEEecCCC----cceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 399 ---YSQNQIMVWKYPSMAKVSTLTGHS----LRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 399 ---~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
...+.|..+|. .++.+..+.... ..+..+++ .+++++++....+.|..+++...
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 11466888886 477666665432 34666766 46666666666788999987643
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.95 E-value=3.2e-07 Score=95.76 Aligned_cols=278 Identities=7% Similarity=-0.018 Sum_probs=171.3
Q ss_pred CCEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCC----------cEEEEEEcCCCCE----EEEEeCCCeEEEEECCCCe
Q 011916 179 QNVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGD----------SVCSVQWTREGSY----ISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~----------~V~~v~~spdg~~----la~g~~dg~v~iwd~~~~~ 242 (475)
+.+++++. ++.|+-+|. .+++..=..+..... ....++++|.+.. |++++.|+.|..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 44555555 688999999 898876555432211 0123455444444 8889999999999999999
Q ss_pred eeEEecCCCC----ceE-EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCccCC-----------------
Q 011916 243 RVRTFGGHQT----RAG-VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGHKSE----------------- 294 (475)
Q Consensus 243 ~~~~~~~h~~----~v~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~~----------------- 294 (475)
.+........ .+. .....+..+++++ .++.|..+|.++ ++.+-.+......
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCC-CcEEEEEcCCCCcccccccccccccccccc
Confidence 9877653220 111 1111234555554 389999999984 4444333221100
Q ss_pred --------------------E-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEecccc--
Q 011916 295 --------------------V-CGLKWSHDDRELASGGND----------------NQLLVWNQHSQQPTLRLTEHTA-- 335 (475)
Q Consensus 295 --------------------V-~~l~~s~~~~~lasg~~D----------------g~I~iwd~~~~~~~~~~~~h~~-- 335 (475)
+ ..+++.++...++.+..+ +.|..+|.++++.+..+.....
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 134556667777777654 3799999999999887764221
Q ss_pred -------ceeEEEEC-CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC--------------Ce----------
Q 011916 336 -------AVKAIAWS-PHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--------------QV---------- 381 (475)
Q Consensus 336 -------~v~~l~~s-p~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--------------~v---------- 381 (475)
...-+... .+|+ .+++.+. .+|.++++|..+|+.+....... ++
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 11112222 4563 3555544 89999999999999887654221 01
Q ss_pred ----------------eEEEEcCCCCeEEEEEe-------------------------------c------CCCeEEEEE
Q 011916 382 ----------------CNLAWSKNVNELVSTHG-------------------------------Y------SQNQIMVWK 408 (475)
Q Consensus 382 ----------------~~l~~s~~~~~l~~~~g-------------------------------~------~dg~I~iwd 408 (475)
..++++|+...+++... . ..|.|..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 23567777666654210 1 347899999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+.+++.+-+.... .++..-.+...+..++.++.|+.|+.||..+++.....
T Consensus 460 ~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 460 AITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp TTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 9999887766421 11211112225667888999999999999998876554
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=2e-07 Score=95.39 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=142.3
Q ss_pred EEEEe-----CCCEEEEEe-CCCcEEEEECCCCCccEEEec-CccCCEEEEEE-c-CCCCEEEEEe--------------
Q 011916 255 GVLAW-----NSRILSSGS-RDRNILQHDLRVSSDYICKLA-GHKSEVCGLKW-S-HDDRELASGG-------------- 311 (475)
Q Consensus 255 ~~l~~-----~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~-s-~~~~~lasg~-------------- 311 (475)
..+++ +|++|+... .+..|.+.|+. ..+....+. .....+.++++ + |+++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 35555 456666655 45679999998 445444332 23356889998 5 8999998885
Q ss_pred ----CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-----------------------------
Q 011916 312 ----NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD----------------------------- 358 (475)
Q Consensus 312 ----~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d----------------------------- 358 (475)
.++.+.++|..+.+.+.++.-.. ....++++|+|+++++++..+..
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 24579999999998887776433 45788999999999988753211
Q ss_pred ------CeEEEEECCC--Cce-eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------eEEE
Q 011916 359 ------RCIRFWNTSN--GHQ-LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------KVST 417 (475)
Q Consensus 359 ------~~I~iwd~~~--~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------~~~~ 417 (475)
+.|.+.|..+ ++. +..+..+....++.++|||++++++ +..++.|.++|+.+.+ .+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-CCCCCeEEEEECcccccccccccCcccceEEE
Confidence 2477888887 555 5677777778899999999999986 6678999999998653 3344
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+. -......++|++||...++.-.|+.|.+||+..
T Consensus 327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 43 234578999999994444556699999999976
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=1.5e-06 Score=80.90 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=144.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeee-----EEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCcc
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRV-----RTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHK 292 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~-----~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 292 (475)
|.+|+.+.. +.|+.+++...... ..+......+..++|+ +..| ++-..++.|..+++.. ...........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCC
Confidence 345666554 47888887654321 1122222356788885 3444 4555678999999873 33333333333
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 293 SEVCGLKWSHDDRELASG-GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
....++++++++..|+.+ ...+.|.++++..................++++|++..|+++..+...+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence 568999999976655554 456789999987543322222222467899999987777777542225789888876433
Q ss_pred eeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEE
Q 011916 372 LNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRF 448 (475)
Q Consensus 372 ~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~i 448 (475)
...+ ........++++++++.|+++ ....+.|.++|+........+.+ ......++.. +..|+.+. ..+.|..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 2222 223467899999998888775 45678999999976544333332 2334567664 44555444 5688999
Q ss_pred EecCCCCCCCCc
Q 011916 449 WNVFPSLKAPAL 460 (475)
Q Consensus 449 W~~~~~~~~~~~ 460 (475)
++..++.....+
T Consensus 234 ~d~~~g~~~~~i 245 (267)
T 1npe_A 234 MDLAISKEMDTF 245 (267)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCCceEEE
Confidence 998877654443
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.92 E-value=4.6e-07 Score=83.35 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=131.2
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEecCCCCc-eEEEEeCCCEE-EEEeCCCcEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVRTFGGHQTR-AGVLAWNSRIL-SSGSRDRNILQ 275 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~l-~sgs~dg~I~i 275 (475)
++..+..+.......+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... .-.++..++.| +....++.+.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 3445543444566899998 666556666655 8999999999999888644332 23466655444 44556899999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll 350 (475)
+|.. ..+.+..+.... +=.++ ++|++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|. ++
T Consensus 112 ~D~~-t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly 185 (262)
T 3nol_A 112 WNIR-NLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IF 185 (262)
T ss_dssp EETT-TCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred EECc-cCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EE
Confidence 9998 555666655322 11233 356777777666789999999998887776542 1 234557776 565 66
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCCCeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l~~~ 396 (475)
+..- .++.|.+.|..+|+.+..++.. .-...|+|+|+++.|+++
T Consensus 186 an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 186 ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 6553 6889999999999999888642 245889999999988885
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=3e-07 Score=84.61 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=134.9
Q ss_pred eeccCCCCCCCCceeEEecCCCCEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEE
Q 011916 158 KVLDAPSLQDDFYLNLVDWSSQNVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQV 235 (475)
Q Consensus 158 ~~l~~p~~~~d~~v~~l~ws~~~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~i 235 (475)
.++..-.+...-|...+.++.+.++.++ .++.|.++|++++++.... +.....-..+++ +++.|... -.++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEE
Confidence 4444333444556778888877655544 4678999999999988877 554322334554 44444444 45789999
Q ss_pred EECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEE
Q 011916 236 WDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASG 310 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg 310 (475)
||.++.+.+.++... ..-..+++++..|+.+..++.|.++|.. ..+.+..+.-.. ..+..+.|. +|...+..
T Consensus 121 ~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 121 WSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 999999999998853 3346778888888888889999999987 444444443211 245677887 77666555
Q ss_pred eCCCcEEEEECCCCceeEEEecc-------------ccceeEEEECCCCCcEEEEe
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEH-------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~ll~sg 353 (475)
-.++.|.+.|.++++.+..+... ....+.|||.|+++.|+++|
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 57889999999999988776532 13568999999999999987
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=1.1e-05 Score=87.55 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=180.7
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCC------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLG------PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~------~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
..+.++....+ .+.+++.+ .|.+|+..+++........ ....|.++...++|. |.+|+.++-|..|+..+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 45777777765 56655555 7999999888766553211 236799999998887 677888778999986654
Q ss_pred eeeEEec------CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEec--------CccCCEEEEEEcCCCCE
Q 011916 242 KRVRTFG------GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLA--------GHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 242 ~~~~~~~------~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~s~~~~~ 306 (475)
....... -....|.++..+. ..|..|+.++-|..||... ........ .....|.++...++++.
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 3322111 1245688998863 5677888888899998863 22222111 12357999999888885
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----- 376 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----- 376 (475)
|..|+.++-|.+||..+++.. .+.. ....|.++...+++...+.+ . +-|.+||..+++......
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEECCBCTTCC
T ss_pred EEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEcccccccc
Confidence 777887778999999877543 3321 34578999998888744443 3 458899988765443221
Q ss_pred --CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------CCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 377 --TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------GHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 377 --~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
....|.++...++|...+. . . +.|..||..+.+. .+. .....|.++...++|.+.++.. . -|.
T Consensus 494 ~~~~~~i~~i~~d~~g~lWig--t-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~ 565 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIG--G-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFY 565 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEE--E-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEE
T ss_pred ccCCceEEEEEECCCCCEEEE--e-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-Cce
Confidence 1256889999988887775 2 3 5688898876654 332 1345689999999998666443 3 577
Q ss_pred EEecCCC
Q 011916 448 FWNVFPS 454 (475)
Q Consensus 448 iW~~~~~ 454 (475)
.||....
T Consensus 566 ~~d~~~~ 572 (795)
T 4a2l_A 566 CFNEKDK 572 (795)
T ss_dssp EEETTTT
T ss_pred eECCCCC
Confidence 7776543
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=3.7e-06 Score=80.17 Aligned_cols=226 Identities=8% Similarity=0.007 Sum_probs=140.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCC--cEEEEECCCCCcc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR--NILQHDLRVSSDY 284 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~ 284 (475)
......++|+++|+++++-..++.|..||.... ....+. .......++++ ++++++..... .|..+|.. .+..
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~ 107 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTV 107 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeE
Confidence 356789999999997777667899999997753 333332 23467888884 56555544332 46666765 3332
Q ss_pred EEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEec---------cccceeEEEECCCCCcEEEEe
Q 011916 285 ICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTE---------HTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 285 ~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~---------h~~~v~~l~~sp~~~~ll~sg 353 (475)
..... ........++..+++..+++-..++.|+++|...++. +..... .-.....| +|++..|+++.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 22111 1223345566555554455544688999999876431 211110 11234455 78888888876
Q ss_pred cCCCCCeEEEEECCC-Cce--eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EecCCCcceEEE
Q 011916 354 GGTADRCIRFWNTSN-GHQ--LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLTGHSLRVLYL 428 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l 428 (475)
. ..+.|..|++.. ++. ...+........+++.++|+.+++ ....+.|.+++.. ++... .+.......+++
T Consensus 186 ~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 T--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp T--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred C--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 5 788999999875 332 112222245678999999987666 5567889999965 55432 233333568999
Q ss_pred EEC---CCCCEEEEEeCCC
Q 011916 429 ATS---PDGQTIVTGAGDE 444 (475)
Q Consensus 429 ~~s---pdg~~l~s~s~Dg 444 (475)
+|. +|+..|+.++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8987777666543
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.89 E-value=7.5e-07 Score=92.87 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=169.7
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcE--------EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSV--------CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V--------~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.+++++..+.|+-+|..+|+..=.......... ..++. .+..+++++.++.|..+|..+++.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4555666645699999999987655554221110 11222 3567888999999999999999998776533
Q ss_pred CC----ceE-E-EEeCC----C-EEEEEe------CCCcEEEEECCCCCccEEEecCccCC-------------------
Q 011916 251 QT----RAG-V-LAWNS----R-ILSSGS------RDRNILQHDLRVSSDYICKLAGHKSE------------------- 294 (475)
Q Consensus 251 ~~----~v~-~-l~~~~----~-~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~~------------------- 294 (475)
.. .+. . +..++ + .+++++ .++.|..+|.++ ++.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CCEEeecCCCccccccccCccccccccccccc
Confidence 21 111 1 11222 2 566654 378999999884 4333322211000
Q ss_pred ----------------------EEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeE
Q 011916 295 ----------------------VCGLKWSHDDRELASGGN--------------------D----NQLLVWNQHSQQPTL 328 (475)
Q Consensus 295 ----------------------V~~l~~s~~~~~lasg~~--------------------D----g~I~iwd~~~~~~~~ 328 (475)
-..+++.++...++.+.. | +.|..+|..+++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 012456666677776653 2 589999999999988
Q ss_pred EEec--ccc----ceeE-EEEC---CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCCCe---------------
Q 011916 329 RLTE--HTA----AVKA-IAWS---PHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV--------------- 381 (475)
Q Consensus 329 ~~~~--h~~----~v~~-l~~s---p~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v--------------- 381 (475)
.+.. |.. .+.. +.+. .+|+ .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 7753 321 1111 1122 4564 3555544 8999999999999988766433200
Q ss_pred -------------------------------eEEEEcCCCCeEEEEEe-------------------------------c
Q 011916 382 -------------------------------CNLAWSKNVNELVSTHG-------------------------------Y 399 (475)
Q Consensus 382 -------------------------------~~l~~s~~~~~l~~~~g-------------------------------~ 399 (475)
..++++|+...+++... .
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 13456666666655321 1
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..|.|..||+.+++.+-+...+. .+..-.....+.+++.++.|+.|+.||..+++......
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 25789999999999887665332 22211112246678889999999999999988766543
No 254
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.88 E-value=5.3e-06 Score=81.95 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=159.9
Q ss_pred EEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 173 ~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
|.+..+...|..+....|+..++.+.....+.. ....+..++|.+.+..|+ +-...+.|..+++........+....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 344445567777778889999998877766653 345688999998655554 54567889999988765444443222
Q ss_pred CceEEEE--eCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCce
Q 011916 252 TRAGVLA--WNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D-NQLLVWNQHSQQP 326 (475)
Q Consensus 252 ~~v~~l~--~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D-g~I~iwd~~~~~~ 326 (475)
.....++ |.+ .++++-...+.|.+.++.. ......+........+|++.|.+..|+.... . +.|..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 2333444 434 4555656677888888863 2223333334466899999987666665543 3 6788888875443
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.......-.....|+|+|++..|+.+-. ..+.|..+|+........+. .......+++. .+ .|+.+ ....+.|.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~~~V~ 312 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHTKSIN 312 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTTTEEE
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEe-eCCCCeEE
Confidence 3333333445789999998888888865 67899999987544333332 23456778883 33 44443 56788899
Q ss_pred EEECCCCceEEEecCCCcceEEEEE
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
.++..+++.+..+.........|++
T Consensus 313 ~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 313 SANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEECCCCcceEEEccCCCCCceEEE
Confidence 9997777666666543333444443
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=6.7e-07 Score=93.11 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=160.9
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEe
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCS-VQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~-v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~ 247 (475)
.+.+++++.++.|+.+|..+++..-....... ..+.+ ... .+..+++++. +|.|..+|..+++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 44566666789999999999998766554220 11211 111 2345666665 799999999999998876
Q ss_pred cCCCCc-------------------------------------e-EEEEeC--CCEEEEEeCC----------------C
Q 011916 248 GGHQTR-------------------------------------A-GVLAWN--SRILSSGSRD----------------R 271 (475)
Q Consensus 248 ~~h~~~-------------------------------------v-~~l~~~--~~~l~sgs~d----------------g 271 (475)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532111 0 123343 3566665532 3
Q ss_pred cEEEEECCCCCccEEEec--Ccc--------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc----
Q 011916 272 NILQHDLRVSSDYICKLA--GHK--------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT---- 334 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~--~h~--------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---- 334 (475)
.|..+|.++ ++.+-.+. .|. ..+. +....+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 273 ~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCC-CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 588899884 44443332 221 2222 22224674 57788899999999999999877654321
Q ss_pred ---------cce--------------------------eEEEECCCCCcEEEEec---------------C---------
Q 011916 335 ---------AAV--------------------------KAIAWSPHQSSLLASGG---------------G--------- 355 (475)
Q Consensus 335 ---------~~v--------------------------~~l~~sp~~~~ll~sg~---------------G--------- 355 (475)
.++ ..++++|+...+++... |
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 23577777775555421 0
Q ss_pred ----------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc-
Q 011916 356 ----------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR- 424 (475)
Q Consensus 356 ----------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~- 424 (475)
..++.|..||+.+++.+..+.....+....+...+..+++ +..++.|+.||..+++.+.++......
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 1358999999999999988876655544444455677777 778999999999999999888743221
Q ss_pred eEEEEECCCCCEEEE
Q 011916 425 VLYLATSPDGQTIVT 439 (475)
Q Consensus 425 V~~l~~spdg~~l~s 439 (475)
-.-+.+..+|+.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 122335567765443
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.87 E-value=4.6e-07 Score=83.31 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=135.8
Q ss_pred CceeccCCCCCCCCceeEEecCCCCEEEE-EcCC--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCC
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAV-GLGT--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLG 231 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~~~la~-~~~~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg 231 (475)
.+.++..-.+...-|...+.|+.+.++.+ |..+ .|+.+|+.++++.....+....--..+.. +++.|...+ .++
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred ceEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCC
Confidence 44555544444556778888886544444 4444 89999999999999887653322233444 455666655 478
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc----c-CCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH----K-SEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~-~~V~~l~~s~~~~~ 306 (475)
.+.+||.++.+.+.++.... .-..+++++..|+.+..++.|.++|.. ..+.+..+.-. . ..+..+.|. +|..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 99999999999999987533 335777888777777778889999987 34444443321 1 335567776 7766
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecc------------ccceeEEEECCCCCcEEEEe
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEH------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~ll~sg 353 (475)
.+..-.++.|.+.|.++++.+..+... ....+.|||+|+++.|+++|
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 666657889999999999988777542 13458999999999999987
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.87 E-value=8.6e-06 Score=79.26 Aligned_cols=239 Identities=8% Similarity=-0.013 Sum_probs=153.7
Q ss_pred EEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 173 ~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
|.+..++..+..+..+.|+..++.......+.. ....+..++|.+.+..|+ +-...+.|..+++........+....
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 444455666777777889999988877666553 345688999998655555 44567889999988765444433222
Q ss_pred CceEEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCce
Q 011916 252 TRAGVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-ND-NQLLVWNQHSQQP 326 (475)
Q Consensus 252 ~~v~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~D-g~I~iwd~~~~~~ 326 (475)
.....+++ . +.++++-...+.|.+.++... .........-....+|++.|.+..|+... .. +.|..+++.....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence 33344554 3 455566666788999998733 22333333445688999999666555544 34 7888888875433
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...+...-.....|+++|++..|+.+-. ..+.|..+|+........+. .......+++. . ..|+.+ ....+.|.
T Consensus 195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~t-d~~~~~V~ 269 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWT-DWHTKSIN 269 (349)
T ss_dssp EESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEE-ETTTTEEE
T ss_pred EEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEe-cCCCCeEE
Confidence 2222223345789999998888888865 67899999987543333332 23456777773 3 344443 56778888
Q ss_pred EEECCCCceEEEec
Q 011916 406 VWKYPSMAKVSTLT 419 (475)
Q Consensus 406 iwd~~~~~~~~~l~ 419 (475)
.++..+++.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 88876666555554
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.87 E-value=1.7e-05 Score=75.90 Aligned_cols=231 Identities=11% Similarity=-0.058 Sum_probs=146.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCC----CeeeEEecCCCCceE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQ----CKRVRTFGGHQTRAG 255 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~----~~~~~~~~~h~~~v~ 255 (475)
+|..+....|+..++.+.+...+. .....+.+++|++++..|+. -..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 456677788999999988776665 33567889999986655554 45568999999876 222222332223345
Q ss_pred EEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEE
Q 011916 256 VLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND--NQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 256 ~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D--g~I~iwd~~~~~~~~~~ 330 (475)
.+++ .+ +++++-...+.|.+.++.. ...............++++.|.+..|+.+... +.|...++.........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 5555 34 4555556788999999873 22222233334568899999966666555543 68888888643322222
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
...-.....|++++++..|+.+-. ..+.|..+|+........... ......+++. +..++.+ ....+.|..+
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d~~~~~V~~~ 234 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAIFSA 234 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred ECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-ECCCCeEEEE
Confidence 223356789999998888888765 678999999875333222221 2346777774 3455543 5677899999
Q ss_pred ECCCCceEEEec
Q 011916 408 KYPSMAKVSTLT 419 (475)
Q Consensus 408 d~~~~~~~~~l~ 419 (475)
+..+++.+..+.
T Consensus 235 ~~~~g~~~~~i~ 246 (316)
T 1ijq_A 235 NRLTGSDVNLLA 246 (316)
T ss_dssp ETTTCCCCEEEE
T ss_pred eCCCCcceEEEe
Confidence 987776655554
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=1.2e-05 Score=87.07 Aligned_cols=270 Identities=8% Similarity=0.021 Sum_probs=175.9
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+.++....+ .+.+++.++.|+.|+..+++............|.++...++|. |.+|+.++-|.+||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecC
Confidence 455555544 5666666667999999888766543223356789988877776 55666554589999887665443221
Q ss_pred -------CCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecC--------ccCCEEEEEEcCCCCEEEEEeCC
Q 011916 250 -------HQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAG--------HKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 250 -------h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~s~~~~~lasg~~D 313 (475)
....|.++..+ ...|..|+.+ -|.+||.. ... ...+.. ....|.++...++|. |..|+.+
T Consensus 254 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDS-FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp TTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT-TTE-EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 23568898885 4566667666 58888876 232 222221 235699999988886 4556777
Q ss_pred CcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---------C
Q 011916 314 NQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------T 377 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------~ 377 (475)
+-|..|+....... .+.. ....|.++...++|...+. +.++-|..||..++....... .
T Consensus 330 ~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG----t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 330 GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIG----TNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEE----ESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEE----ECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 77899987654322 2221 2356899999988874433 267789999988776543221 1
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec----CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT----GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
...|.++...++++.|.+ |..++.|.+||..+++...... .+...|.++...++|.+.+.. .+ -|.+|+...
T Consensus 405 ~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp CSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred CccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 356889988888883444 5566779999988765433221 134579999999988866654 44 478888655
Q ss_pred C
Q 011916 454 S 454 (475)
Q Consensus 454 ~ 454 (475)
+
T Consensus 481 ~ 481 (795)
T 4a2l_A 481 R 481 (795)
T ss_dssp T
T ss_pred C
Confidence 3
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=1.1e-06 Score=80.79 Aligned_cols=187 Identities=10% Similarity=0.033 Sum_probs=132.7
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ceEEEEeCC-CEEEEEeCCCcEEEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RAGVLAWNS-RILSSGSRDRNILQHD 277 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~l~~~~-~~l~sgs~dg~I~iwd 277 (475)
++..+..........+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -... ..-.++..+ .+.+....++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 4455544445666889887 4556666677789999999999988887 2222 223466655 5555666789999999
Q ss_pred CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll~s 352 (475)
.. ..+.+..+... .+-.+++ +|++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|. +++.
T Consensus 123 ~~-Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyan 196 (268)
T 3nok_A 123 GM-PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYAN 196 (268)
T ss_dssp TT-TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred CC-cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEE
Confidence 98 56666666542 2223444 56788888877899999999999887766532 2 234667777 664 6665
Q ss_pred ecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEE
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 396 (475)
.- .++.|.+.|..+++.+..++.. .-...|+|+|+++.|+++
T Consensus 197 vw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 197 IW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp ET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred EC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 53 6889999999999999887532 346889999998888875
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.81 E-value=2.9e-05 Score=76.99 Aligned_cols=245 Identities=12% Similarity=-0.050 Sum_probs=158.6
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQC----KRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~----~~~~~~~~h~~ 252 (475)
+..+|..+....|+..++.......+. .....+..|+|++.+..|+.. ...+.|+.+++... .....+.....
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ccceeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 345667777889999999888776665 345678999999866555554 45688999998752 23333333334
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcee
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPT 327 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~ 327 (475)
....++++ ++++++-...+.|.+.++.. ......+........+|++.|.+..|+.... .+.|...++......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 45555553 45556666778899998873 3333333334456889999997666665542 368999998755443
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQI 404 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I 404 (475)
..+...-.....|++++++..|+.+-. ..+.|..+|+........+.. -.....+++ ++..|+.+ ....+.|
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~~~~V 313 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DIINEAI 313 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESSSCSE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCCCCeE
Confidence 333333356789999998888888754 678999999875443333322 234556766 34455554 4567889
Q ss_pred EEEECCCCceEEEecCCCcceEEEEE
Q 011916 405 MVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
..+|..+++.+..+.........+..
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceEEE
Confidence 99998888777666544444555543
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.76 E-value=5.1e-06 Score=86.65 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=157.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEecCC
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCS-VQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~-v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~~~h 250 (475)
+++++.++.|+-+|..+|+..-....... ..+.+ ... .++ .+++++. +|.|+.+|..+++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 77777899999999999998765543220 11211 111 134 5666653 799999999999998776532
Q ss_pred CCc-------------------------------------e-EEEEe--CCCEEEEEeCC----------------CcEE
Q 011916 251 QTR-------------------------------------A-GVLAW--NSRILSSGSRD----------------RNIL 274 (475)
Q Consensus 251 ~~~-------------------------------------v-~~l~~--~~~~l~sgs~d----------------g~I~ 274 (475)
... + ..+++ ...+++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 0 01223 34667777655 3788
Q ss_pred EEECCCCCccEEEecC--cc--------CCEEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEEeccc------
Q 011916 275 QHDLRVSSDYICKLAG--HK--------SEVCGLKWS-HDD---RELASGGNDNQLLVWNQHSQQPTLRLTEHT------ 334 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~--h~--------~~V~~l~~s-~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~------ 334 (475)
.+|.++ ++.+-.++. |. ..+. +... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 282 Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 282 GRDADT-GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEeCCC-CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 899984 444433332 21 1222 2222 467 467778999999999999999887654211
Q ss_pred -------cce--------------------------eEEEECCCCCcEEEEec---------------------------
Q 011916 335 -------AAV--------------------------KAIAWSPHQSSLLASGG--------------------------- 354 (475)
Q Consensus 335 -------~~v--------------------------~~l~~sp~~~~ll~sg~--------------------------- 354 (475)
.++ ..++++|+...+++...
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence 011 23566666554433210
Q ss_pred ---CC------CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce
Q 011916 355 ---GT------ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 355 ---Gs------~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
.. .++.|..||+.+++.+.......+...-.....+..+++ +..|+.|+.||..+++.+.+++.....+
T Consensus 440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 01 357899999999999888865544333223345677777 7889999999999999998886433221
Q ss_pred -EEEEECCCCC-EEEEEe
Q 011916 426 -LYLATSPDGQ-TIVTGA 441 (475)
Q Consensus 426 -~~l~~spdg~-~l~s~s 441 (475)
.-+.+..+|+ ++++.+
T Consensus 518 ~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 518 GYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp SCCEEEEETTEEEEEEEE
T ss_pred eccEEEEeCCEEEEEEEc
Confidence 2244556776 444433
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.75 E-value=6.3e-06 Score=75.08 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=130.6
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEecCCCCc-eEEEEeCC-CEEEEEeCCCcEE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVRTFGGHQTR-AGVLAWNS-RILSSGSRDRNIL 274 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~~-~~l~sgs~dg~I~ 274 (475)
+++..+..........+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... --.++..+ ++......++.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 344555444456788999986 4444444444 48999999999999887643332 23355544 5555566889999
Q ss_pred EEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc-----cceeEEEECCCCCcE
Q 011916 275 QHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT-----AAVKAIAWSPHQSSL 349 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l 349 (475)
++|.. ..+.+.++.... .=.+++ +++..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.|. +|. +
T Consensus 89 v~D~~-tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l 162 (243)
T 3mbr_X 89 VYDLA-TLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L 162 (243)
T ss_dssp EEETT-TTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred EEECC-cCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence 99998 566666665432 223444 467777777778999999999998877665422 244566766 555 6
Q ss_pred EEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEE
Q 011916 350 LASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 396 (475)
++..- .+..|.+.|..+|+.+..++.. .-...|+++|+++.|+++
T Consensus 163 yanvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 163 LANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EEEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 66543 5789999999999999887522 245789999998888885
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.69 E-value=2.9e-05 Score=74.47 Aligned_cols=234 Identities=10% Similarity=-0.009 Sum_probs=147.8
Q ss_pred CCEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee-EEecCCCCce
Q 011916 179 QNVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRV-RTFGGHQTRA 254 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~-~~~~~h~~~v 254 (475)
.-+|..+....|+..++.+.. ..... .....+.+++|.+.+ .++++-...+.|..+++...... ..+...-...
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 445667778889999998763 22222 223457789999854 44555556788999998765321 1222222233
Q ss_pred EEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEE
Q 011916 255 GVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~ 329 (475)
..+++ . +.++++-...+.|.++++.. ...............++++.|.+..|+.+. ..+.|...++........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 44444 3 45556666778999999873 222223334455688999998766666655 357888888875433222
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
....-.....|++++++..|+.+-. ..+.|..+|+.......... .......+++. +..++.+ ....+.|..++
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywt-d~~~~~V~~~~ 235 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWT-DWSTHSILACN 235 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEE-ecCCCeEEEEE
Confidence 2233345689999998888888865 78899999987543332222 33456777775 3345443 56778999999
Q ss_pred CCCCceEEEecC
Q 011916 409 YPSMAKVSTLTG 420 (475)
Q Consensus 409 ~~~~~~~~~l~~ 420 (475)
..+++....+..
T Consensus 236 ~~~G~~~~~i~~ 247 (318)
T 3sov_A 236 KYTGEGLREIHS 247 (318)
T ss_dssp TTTCCSCEEEEC
T ss_pred CCCCCceEEEeC
Confidence 877776555543
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=7.2e-05 Score=80.84 Aligned_cols=270 Identities=10% Similarity=0.009 Sum_probs=170.2
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL------GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~------~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+.++.-..+ ++.+++.+ .|++||..+++....... -....|.++...++|. |.+|+..+-|.++|..+.+
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence 4566666555 56666655 899999988766543221 1246799998887775 6677775668889987665
Q ss_pred eeEEec--------------CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEec----------CccCCEEE
Q 011916 243 RVRTFG--------------GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLA----------GHKSEVCG 297 (475)
Q Consensus 243 ~~~~~~--------------~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------~h~~~V~~ 297 (475)
...... .....|.++..+ ...|..|+.++-|..++.... .. ..+. .....|.+
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP-TF-HTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC-SC-EEEC----CCCSSCCSSSCEEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC-cc-eeeccCccccccCCCCCcceEE
Confidence 332111 134578888886 356788888888999987632 22 2221 12356999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 298 l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
+...++|. |..|+.++-|.+||..++...... ......|.++...+++...+.+ .++-|..+|..+++....
T Consensus 368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGT----YLGNISYYNTRLKKFQII 442 (781)
T ss_dssp EEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEE----TTEEEEEECSSSCEEEEC
T ss_pred EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEe----ccCCEEEEcCCCCcEEEe
Confidence 99888775 445665566899998754322110 1234678999998888743332 567799999877754332
Q ss_pred ec---CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-----CcceEEEEECCCCCEEEEEeCCCCE
Q 011916 375 VD---TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-----SLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 375 ~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
.. ....|.++...+++...+. .. +.|..||..+++........ ...|.++...++|.+.+.. .++-|
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl 517 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWIG---TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGV 517 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEEE---ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCE
T ss_pred ccCCCCCCeEEEEEECCCCCEEEE---EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCE
Confidence 21 2457888888888876654 33 56999998776543322222 4679999999999866644 43346
Q ss_pred EEEecCC
Q 011916 447 RFWNVFP 453 (475)
Q Consensus 447 ~iW~~~~ 453 (475)
..|+...
T Consensus 518 ~~~~~~~ 524 (781)
T 3v9f_A 518 GIYTPDM 524 (781)
T ss_dssp EEECTTC
T ss_pred EEEeCCC
Confidence 6677644
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=5.5e-05 Score=81.75 Aligned_cols=271 Identities=8% Similarity=-0.047 Sum_probs=173.1
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEee-------C------CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCD-------L------GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~-------~------~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
..+.++.-..+ .+.+++..+.|++++..++....... . -....|.++....+|. |.+|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 34666766665 45555555889999998876544322 0 1245799999988886 77888777789
Q ss_pred EEECCCCeeeEEec---------CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEe----cCccCCEEEEEE
Q 011916 235 VWDGTQCKRVRTFG---------GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKL----AGHKSEVCGLKW 300 (475)
Q Consensus 235 iwd~~~~~~~~~~~---------~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~ 300 (475)
.++..+........ .....|.++..+. ..|..|+.++-|..+|... .. ...+ ......|.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~ 414 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-RV-AIYNKENRELLSNSVLCSLK 414 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-EE-EECC-----CCCSBEEEEEE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-Ce-EEEccCCCCCCCcceEEEEE
Confidence 99876554322210 1235688888864 6677888777788898752 11 1111 123457899988
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
.++|.+. .|+.++-|..+|..+++.. .+. .....|.++...+++...+.+ . +-|..||..+++.......
T Consensus 415 d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 415 DSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGT----H-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp CTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEE----T-TEEEEEESSSSSCCEEECT
T ss_pred CCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEE----C-CceEEEeCCCCeEEecccC
Confidence 8777654 4666677999998776532 222 134678999998888733332 4 5689999887665433221
Q ss_pred ------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 378 ------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG----HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 378 ------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
...|.++...++|...+. ...+-|..||..+.+.. .+.. ....|.++...++|.+.++. .+|.|.
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWig---t~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~ 562 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIG---TFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVC 562 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEE---ESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cccccccceeEEEEEcCCCCEEEE---EcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceE
Confidence 356889999998887765 33345888887665433 3321 24568999999999866654 466547
Q ss_pred EEecCCC
Q 011916 448 FWNVFPS 454 (475)
Q Consensus 448 iW~~~~~ 454 (475)
.||....
T Consensus 563 ~~d~~~~ 569 (781)
T 3v9f_A 563 FPSARNF 569 (781)
T ss_dssp ESCTTTC
T ss_pred EECCCCC
Confidence 7776544
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1.1e-05 Score=83.98 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=161.0
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEE-EEEEcC---CCC-EEEEEeC------CCeEEEEECCCCee
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVC-SVQWTR---EGS-YISVGTN------LGQVQVWDGTQCKR 243 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~-~v~~sp---dg~-~la~g~~------dg~v~iwd~~~~~~ 243 (475)
.+.+++++.++.|+-+|..+|+..-....... ..+. ...... +|+ .+++++. +|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677777899999999999998765544221 0111 111111 233 5666653 78999999999998
Q ss_pred eEEecCCCCce-----------------------------------------EEEEeC--CCEEEEEeC-----------
Q 011916 244 VRTFGGHQTRA-----------------------------------------GVLAWN--SRILSSGSR----------- 269 (475)
Q Consensus 244 ~~~~~~h~~~v-----------------------------------------~~l~~~--~~~l~sgs~----------- 269 (475)
+.........+ ..++++ ..+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654321100 012232 356665553
Q ss_pred ---------C----CcEEEEECCCCCccEEEec--Ccc--------CCEEEEEEc-CCCC---EEEEEeCCCcEEEEECC
Q 011916 270 ---------D----RNILQHDLRVSSDYICKLA--GHK--------SEVCGLKWS-HDDR---ELASGGNDNQLLVWNQH 322 (475)
Q Consensus 270 ---------d----g~I~iwd~~~~~~~~~~~~--~h~--------~~V~~l~~s-~~~~---~lasg~~Dg~I~iwd~~ 322 (475)
| +.|..+|.++ ++.+-.++ .|. ..+. +... .+|+ .++.++.+|.++++|..
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cCCCcccccCCcccceEEEEeCCC-CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5799999984 44444332 232 1222 2222 4664 78889999999999999
Q ss_pred CCceeEEEecccc-------------c--------------------------------eeEEEECCCCCcEEEEec---
Q 011916 323 SQQPTLRLTEHTA-------------A--------------------------------VKAIAWSPHQSSLLASGG--- 354 (475)
Q Consensus 323 ~~~~~~~~~~h~~-------------~--------------------------------v~~l~~sp~~~~ll~sg~--- 354 (475)
+++.+..+..... + -..++++|+...+++...
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 9998876543210 0 013466666555544320
Q ss_pred ---------------------------CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 355 ---------------------------GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 355 ---------------------------Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
...++.|..||+.+|+.+........+..-.....+..+++ |+.|+.|+.|
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~ 512 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAF 512 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEE
Confidence 01368899999999999888765544433333345677777 7889999999
Q ss_pred ECCCCceEEEecCCCcce-EEEEECCCCC-EEEEEeC
Q 011916 408 KYPSMAKVSTLTGHSLRV-LYLATSPDGQ-TIVTGAG 442 (475)
Q Consensus 408 d~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s~ 442 (475)
|..+++.+.+++.....+ .-+.|..+|+ |+++.+.
T Consensus 513 D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 999999998887543322 1255666886 4444433
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.65 E-value=8.1e-05 Score=72.29 Aligned_cols=237 Identities=10% Similarity=-0.003 Sum_probs=149.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
+|.+..+ ..+|+.+.. ..|+..++........+.. ...+..++|+ .. ++++-...+.|..+++... .......
T Consensus 37 ~C~~~~~-~~~ll~~~~-~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVS 112 (349)
T ss_dssp CEEESSS-CCEEEEECB-SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC
T ss_pred ccccccc-CceeEeecc-cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC-CceEEEe
Confidence 3544444 334555444 4588888776554444433 3457888886 34 4445556788999998733 3233333
Q ss_pred CccCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECC
Q 011916 290 GHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTS 367 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~ 367 (475)
.......++++.+.+.. +++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .. +.|..+++.
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I~r~~~d 190 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEASSMD 190 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEEEEEeCC
Confidence 33345678899875544 455555678999998765443333334456789999998887888764 34 889999986
Q ss_pred CCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 368 NGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 368 ~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
.......+. .-.....+++++++..|+.+ -...+.|..+++........+.........|++ ..+..+++-...+.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 543333322 23457899999988888775 446788999998754433334434455678888 344455555566778
Q ss_pred EEEecCCCCCC
Q 011916 447 RFWNVFPSLKA 457 (475)
Q Consensus 447 ~iW~~~~~~~~ 457 (475)
...+-.++...
T Consensus 269 ~~~~~~~G~~~ 279 (349)
T 3v64_C 269 NSANKFTGKNQ 279 (349)
T ss_dssp EEEETTTCCSC
T ss_pred EEEEccCCCcc
Confidence 77775555443
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.61 E-value=0.00043 Score=66.44 Aligned_cols=264 Identities=8% Similarity=0.012 Sum_probs=148.6
Q ss_pred ceeEEecCC-CCEEEEEcCCeEEEEECCCCcE-EEEee-C-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSS-QNVLAVGLGTCVYLWTASNSKV-TRLCD-L-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~-~~~la~~~~~~V~lw~~~~~~~-~~~~~-~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..|.+.+ +.+++++..+.|+ ...+.++. ..... . .....+.+|.|.+ +..++ ++..|.|.. ..+.++.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 466777765 4677788888764 34444432 22211 1 1245789999976 44444 455675544 223333322
Q ss_pred Eec---CCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE-EE
Q 011916 246 TFG---GHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV-WN 320 (475)
Q Consensus 246 ~~~---~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i-wd 320 (475)
.+. .+...+..+.+ ++..++.++.++.|..- .............+...+..+.+.+++.+++++.. +.++. +|
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d 190 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWE 190 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEEC
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeC
Confidence 222 23345666766 34444445556654321 11122333334455667999999999888877654 44444 44
Q ss_pred C--CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCCCeeEEEEcCCCCeE
Q 011916 321 Q--HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 321 ~--~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~~~~~l 393 (475)
- .+.+.+ -......+..+++.+++. +++.+ .+|.+++.+...++....+. ....+..+.+.+++..+
T Consensus 191 ~gG~tW~~~--~~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (327)
T 2xbg_A 191 PGQTAWEPH--NRTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW 264 (327)
T ss_dssp TTCSSCEEE--ECCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred CCCCceeEC--CCCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence 2 223332 123456788999999887 44444 47888776533344433332 12357889999877766
Q ss_pred EEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
++ + .++.| ++....++.-..+. .+...+..+.|..++ .++.++.+|.|.-++
T Consensus 265 ~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 265 LA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 65 4 46666 34444444333333 234567888887555 466677889766554
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=5.4e-05 Score=74.64 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=150.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEecC
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
|.+..+ ..+|+.+.. ..|+.+++........+. .......++|+ .. ++++-...+.|..+++... .....+..
T Consensus 81 C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CEEEEECS
T ss_pred ECCccc-cceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC-CcEEEEeC
Confidence 444444 334555444 568888887665544443 33457888986 34 4555556788999998733 22223333
Q ss_pred ccCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC
Q 011916 291 HKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN 368 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~ 368 (475)
......++++.+.+..| ++-...+.|.+.++........+...-.....|++.|.+..|+.+-. .. +.|..+++..
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG 234 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEASSMDG 234 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEEEeCCC
Confidence 33456778888755544 45455678999888755443334334456789999998888888764 34 7899999865
Q ss_pred Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 369 GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 369 ~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
........ .-.....|+|++++..|+.+ -...+.|..+|+........+.........|++ ..+.++++-...+.|.
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 312 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEE
Confidence 44333333 23457899999988888775 456788999998754444344434455678888 3445555555677788
Q ss_pred EEecCCCCCCC
Q 011916 448 FWNVFPSLKAP 458 (475)
Q Consensus 448 iW~~~~~~~~~ 458 (475)
.++...+....
T Consensus 313 ~~~~~~G~~~~ 323 (386)
T 3v65_B 313 SANKFTGKNQE 323 (386)
T ss_dssp EEETTTCCSCE
T ss_pred EEECCCCcceE
Confidence 88855554433
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.55 E-value=2.9e-06 Score=89.91 Aligned_cols=250 Identities=10% Similarity=0.069 Sum_probs=142.3
Q ss_pred eEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEE--ecCCCCceEEEEe-CCC
Q 011916 189 CVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRT--FGGHQTRAGVLAW-NSR 262 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~--~~~h~~~v~~l~~-~~~ 262 (475)
.+.+||..+++...+..+ .+.....++++..+|+++++|+. ++.+.+||..+.+-... +........+... +++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 689999998876544332 22333345778889999999985 46899999887654433 2222223344555 789
Q ss_pred EEEEEe-CC-----CcEEEEECCCCCccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q 011916 263 ILSSGS-RD-----RNILQHDLRVSSDYICKLAG-----HKSEVCGLKWSHDDRELASGGND---------NQLLVWNQH 322 (475)
Q Consensus 263 ~l~sgs-~d-----g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~ 322 (475)
+++.|+ .+ ..+.+||... .... .+.. ....-....+..++..++.|+.+ ..+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t-~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSS-KTWT-SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTT-TEEE-EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCC-Ccce-eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 999988 44 5689999873 2222 2210 00000001122355555556544 356788888
Q ss_pred CCceeEEEecccc---------ceeEEEECCCCCcEEEEecCCC-C-----C---eEEEEECCCCceeeee----cCCCC
Q 011916 323 SQQPTLRLTEHTA---------AVKAIAWSPHQSSLLASGGGTA-D-----R---CIRFWNTSNGHQLNSV----DTGSQ 380 (475)
Q Consensus 323 ~~~~~~~~~~h~~---------~v~~l~~sp~~~~ll~sg~Gs~-d-----~---~I~iwd~~~~~~~~~~----~~~~~ 380 (475)
+.........+.. .-.++.|...+..|++.||... + . .|.+||..+..-.... .....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 7654333222211 2344555444555888775210 1 1 6888888776544332 12222
Q ss_pred eeEEEEcCCCCeEEEEEecCC-----------CeEEEEECCCCceEE--EecCCCcceEEEEECCCCCEEEEEeC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQ-----------NQIMVWKYPSMAKVS--TLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~d-----------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
-.+++..++++.+++ |..+ ..+.+||..+.+... .+...........+.+||+.++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 345566788888777 5432 468999987654322 11111122234556799999999885
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=0.00012 Score=70.02 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=135.9
Q ss_pred eeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCC------------------CCCcEEEEEEcC-CCCEEEEEeC
Q 011916 171 LNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLG------------------PGDSVCSVQWTR-EGSYISVGTN 229 (475)
Q Consensus 171 v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~------------------~~~~V~~v~~sp-dg~~la~g~~ 229 (475)
...++|+++ + +++...++.|+.|+..+++........ ....+.++++.+ +| .|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEEC
Confidence 345778775 5 555555889999998877665433211 013578999998 55 4666655
Q ss_pred CCeEEEEECCCCeeeEEec---C-CCCceEEEEeC---CCEEEEEeC-----------------CCcEEEEECCCCCccE
Q 011916 230 LGQVQVWDGTQCKRVRTFG---G-HQTRAGVLAWN---SRILSSGSR-----------------DRNILQHDLRVSSDYI 285 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~---~-h~~~v~~l~~~---~~~l~sgs~-----------------dg~I~iwd~~~~~~~~ 285 (475)
.+.|..+|..+++...... + .......++++ +++.++-.. ++.|..+|... +..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~- 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-KET- 177 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-TEE-
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC-CEE-
Confidence 5568888877554322111 1 11245667764 344444322 35677787652 222
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCCCcEEEEecC-------
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGG------- 355 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G------- 355 (475)
..+.........|+|+++++.|+.+ ...+.|.+|++.... ....+....+ ...+++.++|..+++....
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 2221122345679999999866665 556899999987531 1122222223 7889999999844443210
Q ss_pred CCCCeEEEEECCCCceeeeecCC-----CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTG-----SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
...+.|..+|. .++.+..+... ..+..+++ .++ .|+++ ....+.|.++++.
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSSCSEEEEEEC-
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecCCCceEEEecc
Confidence 01467888886 47777666432 34666666 344 44442 5567888888875
No 273
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.54 E-value=0.00064 Score=63.95 Aligned_cols=272 Identities=8% Similarity=0.064 Sum_probs=182.6
Q ss_pred EecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+.+.+|+++++-. +..|.|.|+..+..........+ +.-.+|..+.||.-. ..+++|+|+++.+.++.+.-
T Consensus 31 lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~ 105 (365)
T 2xzh_A 31 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM 105 (365)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred eeeecCceEEEEecCCCCCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec
Confidence 4444566666643 34788889887654443333333 344588888888876 57899999999999988775
Q ss_pred CCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEEEEEEcCCCCEEEEEeC-------CCcEE
Q 011916 250 HQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVCGLKWSHDDRELASGGN-------DNQLL 317 (475)
Q Consensus 250 h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~s~~~~~lasg~~-------Dg~I~ 317 (475)
. ..|.--.| +.+.|+..+ +..|+.|++.....+.+.+..|. ..|..-..+++.++++..|- .|.+.
T Consensus 106 ~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 106 T-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp S-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred C-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEE
Confidence 4 57777788 677777766 46899999986666777666554 46888888999998876542 36788
Q ss_pred EEECCCCceeEEEeccccceeEEEEC--CCCCcEEEEec-CCCCCeEEEEECCCC---c-----eeeee--c---CCCCe
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWS--PHQSSLLASGG-GTADRCIRFWNTSNG---H-----QLNSV--D---TGSQV 381 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~ll~sg~-Gs~d~~I~iwd~~~~---~-----~~~~~--~---~~~~v 381 (475)
+|..+.+. -+.+.+|.+....+... +....|++.+. +...+++++-++... . ....+ . ...-.
T Consensus 184 LYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP 262 (365)
T 2xzh_A 184 LYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 262 (365)
T ss_dssp EEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE
T ss_pred EEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce
Confidence 99987653 46677887766544443 22233444432 112368999998432 1 11111 1 12346
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.++..++....++. -+.-|.|++||+.++.++..-+-....|..-+-..+..=++.....|.|.--.++...
T Consensus 263 Vamqvs~kygviyv--iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 263 VAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEecccCCEEEE--EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 67888888888777 4478999999999999998877667777655555554455666688877776666554
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.53 E-value=0.0002 Score=77.02 Aligned_cols=234 Identities=12% Similarity=-0.051 Sum_probs=149.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----eeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQC----KRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~----~~~~~~~~h~~ 252 (475)
...+|..+....|+..++.......+.. ....+.+|+|.+.+..| ++-...+.|+.+++... .....+.....
T Consensus 394 ~~p~Ll~an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 394 SIAYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp SCCEEEEECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccccccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 3456777777888888888777666653 35678899999855444 45555688999998753 22333332333
Q ss_pred ceEEEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcee
Q 011916 253 RAGVLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPT 327 (475)
Q Consensus 253 ~v~~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~ 327 (475)
....|++ .+ +++++-...+.|.+.++.. ......+........+|++.|.+..|+.... .+.|.+.++......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 4444554 44 5556666788999999873 3322333334456899999997666666543 267999998765443
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEecCCCeE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQI 404 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg~I 404 (475)
..+...-.....|++.+.+..|+.+-. ..+.|..+++........+... .....|++. +..|+.+ -...+.|
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt-D~~~~~I 625 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAI 625 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE-ECCCCEE
Confidence 333333456889999988888888754 6789999998655444443321 234556653 4466654 5567888
Q ss_pred EEEECCCCceEEEec
Q 011916 405 MVWKYPSMAKVSTLT 419 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~ 419 (475)
...+..+++.+..+.
T Consensus 626 ~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 626 FSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEee
Confidence 888877776555543
No 275
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.52 E-value=0.0004 Score=72.84 Aligned_cols=232 Identities=8% Similarity=-0.074 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
|+.+|..+..+.|...++++........+..-..+..|+|.+.+..|+ +-..++.|..+++........+.........
T Consensus 5 p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 345677778899999999887665555444446788999999665555 4456789999998765444444322233444
Q ss_pred EEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEe
Q 011916 257 LAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLT 331 (475)
Q Consensus 257 l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~ 331 (475)
+++ .+ +++++-...+.|.+.++... .........-....+|++.|....|.... ..+.|...++........+
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQ-HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTST-TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCC-cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 554 44 45566566788999998733 22222324445678999998655666554 2467888888755433333
Q ss_pred ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
..-.....|++.+++..|+.+-. ..+.|..+|+.................+++.. ..|+.+ -...+.|...|..+
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I~~~dk~t 237 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSIERANKTS 237 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEE-ETTTTEEEEEETTT
T ss_pred CCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEe-cCCCCEEEEEECCC
Confidence 34456789999998888888865 78899999987654422223334566777764 355553 45678888888766
Q ss_pred CceEE
Q 011916 412 MAKVS 416 (475)
Q Consensus 412 ~~~~~ 416 (475)
++...
T Consensus 238 g~~~~ 242 (628)
T 4a0p_A 238 GQNRT 242 (628)
T ss_dssp CCSCE
T ss_pred CCceE
Confidence 64433
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.51 E-value=0.00049 Score=65.69 Aligned_cols=230 Identities=13% Similarity=0.031 Sum_probs=144.0
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCC---CccEEEecCccCCEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVC 296 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 296 (475)
+|+.+.. ..|+..|+.+.+....+. .......++|+ +. ++++-..++.|..+++... ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4555554 468889988776655544 34567788885 34 4555556789999998731 222222332334567
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
++++.+.+..| ++-...+.|.+.++........+.........+++.|.+..++.+..+ ..+.|..+++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-CEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCC-CeEEE
Confidence 89998755444 454567899999987554333333334567899999988878877541 2378998887543 33333
Q ss_pred -c-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 376 -D-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 376 -~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
. .-.....+++++++..|+.+ -...+.|..+|+.......... ..-.....|++. .+..+++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 2 33567899999988888775 4466799999987433222222 223446778874 3555555556778888887
Q ss_pred CCCCCCC
Q 011916 452 FPSLKAP 458 (475)
Q Consensus 452 ~~~~~~~ 458 (475)
.++....
T Consensus 237 ~~g~~~~ 243 (316)
T 1ijq_A 237 LTGSDVN 243 (316)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6665443
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.49 E-value=0.0012 Score=64.53 Aligned_cols=272 Identities=8% Similarity=0.060 Sum_probs=184.5
Q ss_pred EecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+.+.+|.++++-. +..|.|-|+.++..+....+..+ +.-.+|..+.||.-. ..+++|+|+++...++.+..
T Consensus 30 ~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~ 104 (494)
T 1bpo_A 30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM 104 (494)
T ss_dssp EEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred eeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec
Confidence 3444566666543 34788888887654433333322 445688888888776 57999999999999988875
Q ss_pred CCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEEEEEEcCCCCEEEEEe-------CCCcEE
Q 011916 250 HQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVCGLKWSHDDRELASGG-------NDNQLL 317 (475)
Q Consensus 250 h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~s~~~~~lasg~-------~Dg~I~ 317 (475)
.. .|.--.| +.+.|+..+ +..|+.|++.....+++.+..|. ..|..-..+++.++++..| -.|.+.
T Consensus 105 ~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 105 TD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred CC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 44 5667777 777777765 46899999986566777666554 4688888899999887654 246788
Q ss_pred EEECCCCceeEEEeccccceeEEEECCC--CCcEEEEec-CCCCCeEEEEECCCC---c-----eeeeec-----CCCCe
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPH--QSSLLASGG-GTADRCIRFWNTSNG---H-----QLNSVD-----TGSQV 381 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~--~~~ll~sg~-Gs~d~~I~iwd~~~~---~-----~~~~~~-----~~~~v 381 (475)
+|..+.+. -+.+.+|.+....+....+ ...|++.+. ....++++|-++... . ....+. ...-.
T Consensus 183 LYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 183 LYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp EEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred Eeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 99987653 4677788777665555422 223444432 112378999998543 1 111111 12346
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.++..++....++. -..-|.|++||+.++..+..-+-....|..-+-.....=++.....|.|.--.++...
T Consensus 262 vamqvs~kygviyv--iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 262 VAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eEEEecccCCEEEE--EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 67888888888887 4578999999999999998877667777666665555556666688887777766554
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=0.00024 Score=67.36 Aligned_cols=219 Identities=11% Similarity=0.052 Sum_probs=134.6
Q ss_pred CceeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeee
Q 011916 169 FYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRV 244 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~ 244 (475)
.+...++|+++ +++.+. .++.|+.|+..+. ....... ...+..+++.++|+++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45677899876 566665 4789999998764 4444432 4578999999999965555432 24777787777654
Q ss_pred EEecC-CCCceEEEE-eCCCEEEEE-eCCCcEEEEECCCCCccEEEec---------CccCCEEEEEEcCCCCEEEEEe-
Q 011916 245 RTFGG-HQTRAGVLA-WNSRILSSG-SRDRNILQHDLRVSSDYICKLA---------GHKSEVCGLKWSHDDRELASGG- 311 (475)
Q Consensus 245 ~~~~~-h~~~v~~l~-~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~lasg~- 311 (475)
..... .......++ |.+..++.. ..++.|..+|.......+.... ..-.....| +++++.|+.+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 33321 112223333 444444444 4588888888753211111110 111245566 77887665554
Q ss_pred CCCcEEEEECCC-Cce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCC-CCeeEEE
Q 011916 312 NDNQLLVWNQHS-QQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTG-SQVCNLA 385 (475)
Q Consensus 312 ~Dg~I~iwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~-~~v~~l~ 385 (475)
..+.|.++|+.. ++. ...+.. ......+++.++|. ++++.. ..+.|.++|.. ++... .+... ....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 567899999874 321 122211 13467899999997 555533 57889999975 65532 34433 6689999
Q ss_pred Ec---CCCCeEEEEE
Q 011916 386 WS---KNVNELVSTH 397 (475)
Q Consensus 386 ~s---~~~~~l~~~~ 397 (475)
|. ++++.|+++.
T Consensus 262 ~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECCSTTTTTEEEEEE
T ss_pred EecccCCCCEEEEEC
Confidence 98 8888888754
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00012 Score=73.13 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=139.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeC-CC----cEEEEECCCCC
Q 011916 211 SVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DR----NILQHDLRVSS 282 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg----~I~iwd~~~~~ 282 (475)
....|+|+| ++..|+++...+.|+.+|+..+....... .......++++ ++.|+++.. ++ .+.+.+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889998 45566666665889999988776554443 44567788885 565555543 22 23444433211
Q ss_pred ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 283 DYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.....+. ......+++++| ++.++++-..++.|+.++...+........ .......|+|+|++++|+++.. ..+.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~--~~~~ 293 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV--NQHY 293 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--CCCE
Confidence 1112222 123456788999 676666666778999999987654222221 2234678999999997877754 6889
Q ss_pred EEEEECCC--Cce--eeeec-C-C--------------CCee-EEEEc--------CCCCeEEEEEecCCCeEEEEECCC
Q 011916 361 IRFWNTSN--GHQ--LNSVD-T-G--------------SQVC-NLAWS--------KNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 361 I~iwd~~~--~~~--~~~~~-~-~--------------~~v~-~l~~s--------~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
|..++... +.. +..+. . + .... .++.. +++..+++ -...+.|+.++ ++
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIRILT-PQ 370 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEEEEC-TT
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEEEEC-CC
Confidence 99987653 221 11111 0 0 1122 34443 33444444 55677888888 45
Q ss_pred CceEEEecCC---------C---------cceEEEEECCC-CCEEEEEeCCCCEEEEecC
Q 011916 412 MAKVSTLTGH---------S---------LRVLYLATSPD-GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 412 ~~~~~~l~~h---------~---------~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~ 452 (475)
+... .+.+. . .....|+++++ +.++++-.....|+.++++
T Consensus 371 G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 5433 22211 1 24789999995 6555555566778877764
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.00039 Score=64.00 Aligned_cols=196 Identities=15% Similarity=0.192 Sum_probs=131.4
Q ss_pred CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+-.+.+..++|+|++. ++++...++.|...|.. ++.++.+. +.....-.+++. +.++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4446799999999765 45557778899999988 88887764 223456677773 4455555577889999887544
Q ss_pred c--cEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeEEEec-------cccceeEEEECC
Q 011916 283 D--YICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH---SQQPTLRLTE-------HTAAVKAIAWSP 344 (475)
Q Consensus 283 ~--~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~---~~~~~~~~~~-------h~~~v~~l~~sp 344 (475)
. .+.... ..+....+|+|+|+++.|.++.+.....||.+. ....+..+.. +...+.+++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 3 112221 234557899999998877777665555555543 1112222211 233568999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG----------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
....+++... ..+.|.++|.. |+.+..+... .+.-.++|.++|+..++ ++.+.+++|.-
T Consensus 183 ~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~~ 251 (255)
T 3qqz_A 183 QKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEEC
T ss_pred CCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEEe
Confidence 8888888876 88999999965 5566555322 37789999999985555 35667777653
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.42 E-value=0.00024 Score=67.95 Aligned_cols=232 Identities=12% Similarity=0.028 Sum_probs=143.7
Q ss_pred EEEEEeCCCeEEEEECCCCe-eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 223 YISVGTNLGQVQVWDGTQCK-RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
+|+.+. ...|+.+++.... .....-.....+.+++|+ +.++++-...+.|..+++.........+...-....++
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 444444 3578889987653 111111122356688885 34555556778899999874422222222223456788
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-
Q 011916 299 KWSHDDR-ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD- 376 (475)
Q Consensus 299 ~~s~~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~- 376 (475)
++.+.+. ++++-...+.|.++++........+.........|++.|.+..|+.+-.+ ..+.|...++........+.
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEEEEC
Confidence 8887444 44555566789999987654333333444567899999987777777521 35789999876433322222
Q ss_pred CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 377 TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 377 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.-.....|++++++..|+.+ -...+.|..+|+........+.+.......+++.. +.++++-...+.|..++..++..
T Consensus 164 ~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 23457899999988888775 45678999999875433333333445567788753 34455555667888888876655
Q ss_pred CC
Q 011916 457 AP 458 (475)
Q Consensus 457 ~~ 458 (475)
..
T Consensus 242 ~~ 243 (318)
T 3sov_A 242 LR 243 (318)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=2.9e-05 Score=83.58 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=132.3
Q ss_pred CceeEEecC-CC-CEEEEEcC--C----eEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Q 011916 169 FYLNLVDWS-SQ-NVLAVGLG--T----CVYLWTASNS-KVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws-~~-~~la~~~~--~----~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~ 234 (475)
+.+....|| |+ +.+|.+.+ | .|+++|+.++ +.... .-......++|+|||+.|+....+ ..|.
T Consensus 174 ~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 174 CDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp CEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 367889999 87 55665442 2 4999999998 62110 001123468899999988887765 2588
Q ss_pred EEECCCCee--eEEec-CCCCceEEEEe--CCCEEEEEe---CCCcEEEEECCCCCccE--EEe-cCccCCEEEEEEcCC
Q 011916 235 VWDGTQCKR--VRTFG-GHQTRAGVLAW--NSRILSSGS---RDRNILQHDLRVSSDYI--CKL-AGHKSEVCGLKWSHD 303 (475)
Q Consensus 235 iwd~~~~~~--~~~~~-~h~~~v~~l~~--~~~~l~sgs---~dg~I~iwd~~~~~~~~--~~~-~~h~~~V~~l~~s~~ 303 (475)
++++.++.. ...+. ........+.| ++++|+... ....|.++|+....... ..+ .........+.|+.+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 888877642 23333 22334566777 567666554 23467888887432222 333 333445566666544
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceeEE-Eecccc--ceeEEEECCCCCcEEEEecCCCCCe--EEEEEC-------C
Q 011916 304 DRELASGGND----NQLLVWNQHSQQPTLR-LTEHTA--AVKAIAWSPHQSSLLASGGGTADRC--IRFWNT-------S 367 (475)
Q Consensus 304 ~~~lasg~~D----g~I~iwd~~~~~~~~~-~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d~~--I~iwd~-------~ 367 (475)
+.+++....+ ..|.++|+.+...... +..+.. .+..+.+. +..|+++.. .++. |.++|+ .
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECCTTTSCCC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEeccccccccc
Confidence 4344444333 3677788765222122 223333 34555554 566777754 5665 566675 3
Q ss_pred CCceeeeecCCCC--eeEEEE----cCCCCeEEEEEecC--CCeEEEEECCCCc
Q 011916 368 NGHQLNSVDTGSQ--VCNLAW----SKNVNELVSTHGYS--QNQIMVWKYPSMA 413 (475)
Q Consensus 368 ~~~~~~~~~~~~~--v~~l~~----s~~~~~l~~~~g~~--dg~I~iwd~~~~~ 413 (475)
+++....+..... +..+.+ ++++..++.+..+. -..++.+|+.+++
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4441344433333 333332 45666665543322 2467788887665
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=3.3e-05 Score=83.18 Aligned_cols=239 Identities=10% Similarity=0.069 Sum_probs=131.3
Q ss_pred cEEEEEEc-CCCCEEEEEeCC-C----eEEEEECCCC-eeeEE-ecCCCCceEEEEe--CCCEEEEEeCC-----CcEEE
Q 011916 211 SVCSVQWT-REGSYISVGTNL-G----QVQVWDGTQC-KRVRT-FGGHQTRAGVLAW--NSRILSSGSRD-----RNILQ 275 (475)
Q Consensus 211 ~V~~v~~s-pdg~~la~g~~d-g----~v~iwd~~~~-~~~~~-~~~h~~~v~~l~~--~~~~l~sgs~d-----g~I~i 275 (475)
.+...+|| |||++||.+... | .|+++|+.++ +.+.. +. .....++| +++.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 999999876542 3 4999999988 63211 11 11345778 45666666554 25777
Q ss_pred EECCCCCcc-EEEec-CccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEEe-ccccceeEEEECCCC
Q 011916 276 HDLRVSSDY-ICKLA-GHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQ-PT--LRLT-EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 276 wd~~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~-~~--~~~~-~h~~~v~~l~~sp~~ 346 (475)
+++...... ...+. ........+.|+|||++|+.... ...|+++|+.++. .. ..+. ........+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888643322 22222 23345678899999998887653 3478899998752 22 3333 2344455566554 5
Q ss_pred CcEEEEecC--CCCCeEEEEECCCC-ceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCe--EEEEEC-------CCCc
Q 011916 347 SSLLASGGG--TADRCIRFWNTSNG-HQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQ--IMVWKY-------PSMA 413 (475)
Q Consensus 347 ~~ll~sg~G--s~d~~I~iwd~~~~-~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~--I~iwd~-------~~~~ 413 (475)
..|++.... .....|..+|+.++ +... .+.+...+.--.+...++.|++. ...++. |.++++ ..++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA-GRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE-EEETTEEEEEEEECCTTTSCCCTTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE-EEeCCEEEEEEEecccccccccCCc
Confidence 555555431 12357888888753 2222 33333332222334445666654 445664 566675 3333
Q ss_pred eEEEecC-CCcceEEEEE----CCCCC-EEEEEeCC---CCEEEEecCCC
Q 011916 414 KVSTLTG-HSLRVLYLAT----SPDGQ-TIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 414 ~~~~l~~-h~~~V~~l~~----spdg~-~l~s~s~D---g~I~iW~~~~~ 454 (475)
.+..+.- ....+..+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 410 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 410 GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 1333321 1122334433 34554 44444332 35666666544
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.41 E-value=0.00087 Score=66.25 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=148.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCC---CccEEEecCccCCE
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVS---SDYICKLAGHKSEV 295 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V 295 (475)
.+|+.+.. ..|+..++........+. ....+..++|+ ...| ++-...+.|..+++... ..............
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34555444 678888887665444443 45577889986 3444 44456788888888632 12233333344568
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 296 CGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 296 ~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.+|++.+. +++.++-...+.|.+.++........+...-.....|++.|.+..|+.+-.| ..+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEE
Confidence 89999884 4455555567889999988665444444344567899999988778877532 347899999865444333
Q ss_pred ecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 375 VDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 375 ~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+.. -.....|++++++..|+.+ -...+.|..+|+........+.. .-.....|++. .+.++++-...+.|..++.
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 333 3578899999988888875 44578899999865443333322 23445677773 3345555556678888886
Q ss_pred CCCCCCCC
Q 011916 452 FPSLKAPA 459 (475)
Q Consensus 452 ~~~~~~~~ 459 (475)
.++.....
T Consensus 319 ~~G~~~~~ 326 (400)
T 3p5b_L 319 LTGSDVNL 326 (400)
T ss_dssp SSCCCCEE
T ss_pred CCCCceEE
Confidence 66655443
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=0.00016 Score=72.34 Aligned_cols=234 Identities=7% Similarity=-0.035 Sum_probs=141.0
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---C-cEEEEECCCCC
Q 011916 211 SVCSVQWTRE--GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---R-NILQHDLRVSS 282 (475)
Q Consensus 211 ~V~~v~~spd--g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g-~I~iwd~~~~~ 282 (475)
....|+|+|+ +..|+++...+.|+.+|..+++..... ........++++ ++++++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 445666655489999998877765544 344567788884 5644443321 1 23333332111
Q ss_pred ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE-ec-cccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 DYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL-TE-HTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
.....+. ......++++++ ++.++++-..++.|+.+|..++.....+ .. ....-..|+|+|++..|+++-. ..+
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--~~~ 295 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--GKH 295 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--TTT
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--CCC
Confidence 1111111 223456788999 6766666556788999999877652222 21 1122346999999997887754 678
Q ss_pred eEEEEECC--CCcee--eee-cC---------------CCCeeEEEE---------cCCCCeEEEEEecCCCeEEEEECC
Q 011916 360 CIRFWNTS--NGHQL--NSV-DT---------------GSQVCNLAW---------SKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 360 ~I~iwd~~--~~~~~--~~~-~~---------------~~~v~~l~~---------s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.|+.++.. ++... ..+ .. -.....+++ .+++..+++ -...+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~~~~- 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRVLTP- 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEEECT-
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEEECC-
Confidence 99998865 33211 111 10 123566888 666666555 667788999984
Q ss_pred CCceEEEecCC------------------CcceEEEEEC-CCCCEEEEEeCCCCEEEEecC
Q 011916 411 SMAKVSTLTGH------------------SLRVLYLATS-PDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 411 ~~~~~~~l~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++. +.++.+. -.....|+++ ++|.++++-.....|+.++++
T Consensus 373 ~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 553 3333221 1236789999 677666666667788887764
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.31 E-value=3.3e-06 Score=89.95 Aligned_cols=244 Identities=11% Similarity=-0.054 Sum_probs=146.0
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEEecCCCCce
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ----CKRVRTFGGHQTRA 254 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~----~~~~~~~~~h~~~v 254 (475)
.+|..+..+.|+..++.+.+...+.. ....+..|+|.+.+..|+... ..+.|+.+++.. ......+.......
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred eeEEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 34445556788888888877655542 334567899998766666554 457899999875 22222222111223
Q ss_pred EEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE
Q 011916 255 GVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~ 329 (475)
..|++ . ++++++-...+.|.++++.. ......+.........|++.|.+.+|+.+.. .+.|.++++........
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 34554 3 35555556678899999863 2222222222345678899986655555442 26788888764332222
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
+...-.....|+|+|++..|+++-. ..+.|..+++........+.. ......|++.. ..|+.+ ....+.|..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt-d~~~~~V~~ 609 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-DIINEAIFS 609 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE-CSTTTCEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE-eCCCCeEEE
Confidence 2222345678999999888888765 678999999865433322221 12345566644 355554 456789999
Q ss_pred EECCCCceEEEecCCCcceEEEEEC
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
++..+++.+..+.........|++.
T Consensus 610 ~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 610 ANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEccCCCceEEeecCCCCCcEEEEe
Confidence 9988888777765433344455443
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.29 E-value=2.9e-05 Score=82.22 Aligned_cols=259 Identities=14% Similarity=0.048 Sum_probs=141.8
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCeee--EEecC-CCCceEE
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLG-----------QVQVWDGTQCKRV--RTFGG-HQTRAGV 256 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg-----------~v~iwd~~~~~~~--~~~~~-h~~~v~~ 256 (475)
.+|..+++...+..+.. .-.++++.+ +|++++.|+.+. .+.+||..+++.. ..+.. +.....+
T Consensus 170 ~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 247 (656)
T 1k3i_A 170 APQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 247 (656)
T ss_dssp CCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred cCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc
Confidence 34445555555554432 122556777 888888887643 5889998876532 23322 2233323
Q ss_pred EE--eCCCEEEEEeC-CCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCce
Q 011916 257 LA--WNSRILSSGSR-DRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHDDRELASGG-ND-----NQLLVWNQHSQQP 326 (475)
Q Consensus 257 l~--~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~lasg~-~D-----g~I~iwd~~~~~~ 326 (475)
++ .++.+++.|+. +..+.+||.... .....-..+ ...-.++...+++++++.|+ .+ ..+.+||..+.+-
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 33 47889999884 568999998733 222211111 11123455667899999998 44 5799999987653
Q ss_pred eEEE----eccccceeEEEECCCCCcEEEEecC-------CCCCeEEEEECCCCceeeeecCC----------CCeeEEE
Q 011916 327 TLRL----TEHTAAVKAIAWSPHQSSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTG----------SQVCNLA 385 (475)
Q Consensus 327 ~~~~----~~h~~~v~~l~~sp~~~~ll~sg~G-------s~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~ 385 (475)
...- ......-....+..++. +++.|+. .....+..||..+.......... ..-.++.
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 3210 00000000011223333 4444430 01346788998876644322111 1234444
Q ss_pred EcCCCCeEEEEEecCCC-----------eEEEEECCCCceEEEe--cCCCcce-EEEEECCCCCEEEEEeCC--------
Q 011916 386 WSKNVNELVSTHGYSQN-----------QIMVWKYPSMAKVSTL--TGHSLRV-LYLATSPDGQTIVTGAGD-------- 443 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg-----------~I~iwd~~~~~~~~~l--~~h~~~V-~~l~~spdg~~l~s~s~D-------- 443 (475)
|...+..|++. |..++ .|.+||..+.+..... ..+..+. .+++..++|++++.|+.+
T Consensus 406 ~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 406 YDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred ccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 54434445444 44321 6788888776654433 2233343 345677899999998864
Q ss_pred ---CCEEEEecCCCC
Q 011916 444 ---ETLRFWNVFPSL 455 (475)
Q Consensus 444 ---g~I~iW~~~~~~ 455 (475)
..+.+||.....
T Consensus 485 ~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred CcccceEEEcCCCCc
Confidence 467889876543
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.21 E-value=0.0033 Score=57.78 Aligned_cols=197 Identities=11% Similarity=0.165 Sum_probs=128.4
Q ss_pred EecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+-...+..++|+ ++ ++++...++.|...|.. +..+..+. .-.....+|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 455666789999996 34 55567788889888886 55555543 22356889999998877677666788999988
Q ss_pred CCCcee---EEEe------ccccceeEEEECCCCCcEEEEecCCCCC-eEEEEEC-CCCceeeeec--------CCCCee
Q 011916 322 HSQQPT---LRLT------EHTAAVKAIAWSPHQSSLLASGGGTADR-CIRFWNT-SNGHQLNSVD--------TGSQVC 382 (475)
Q Consensus 322 ~~~~~~---~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-~I~iwd~-~~~~~~~~~~--------~~~~v~ 382 (475)
.....+ .... ........|+|.|.+..|+++.. .+. .|+.|+- .....+..+. .-..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 654422 2221 12345689999999987877653 333 5666651 1111122221 123578
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC---------cceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---------LRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
.++++|....+++. ....+.|.++|.. ++.+..+.-.. ..-..|+|.++|+..++ ++-..++.+
T Consensus 177 ~l~~dp~tg~lliL-S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 177 GAEFNQQKNTLLVL-SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEE-ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred eEEEcCCCCeEEEE-ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99999988887776 5678899999965 44554443221 25689999999985555 666544444
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.0014 Score=66.08 Aligned_cols=241 Identities=9% Similarity=-0.021 Sum_probs=143.5
Q ss_pred cEEEEEEcC-CCCEEEEEeC-CCeEEEEECCCCeeeEEecCC---CCceEEEEe-------C--CCEEEEEeCCC-----
Q 011916 211 SVCSVQWTR-EGSYISVGTN-LGQVQVWDGTQCKRVRTFGGH---QTRAGVLAW-------N--SRILSSGSRDR----- 271 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~--~~~l~sgs~dg----- 271 (475)
....|+|.| ++..|+++.. .+.|++.|++++......... ......++| + ++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3555555544 467999998887776655432 235788888 4 56566665543
Q ss_pred --cEEEEECCCCCccE-----EEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 011916 272 --NILQHDLRVSSDYI-----CKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQH-------SQQP---------- 326 (475)
Q Consensus 272 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~-------~~~~---------- 326 (475)
.|.+.+....+... ..+... ....+++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26666544212221 222221 23457788994 5555566677889999987 4443
Q ss_pred -eEE-Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCcee--eee-cC---C------------CCee-
Q 011916 327 -TLR-LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT--SNGHQL--NSV-DT---G------------SQVC- 382 (475)
Q Consensus 327 -~~~-~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~--~~~~~~--~~~-~~---~------------~~v~- 382 (475)
... +. ........|+|+|++..|+++-. ....|+.++. .++... ..+ .. . ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 21 12344578999999997777654 6788998654 333220 111 10 0 1233
Q ss_pred EEEEc-------CCCCeEEEEEecCCCeEEEEECCCCceEEEecCC------------------------CcceEEEEEC
Q 011916 383 NLAWS-------KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH------------------------SLRVLYLATS 431 (475)
Q Consensus 383 ~l~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h------------------------~~~V~~l~~s 431 (475)
.++.. .++..+++ -..++.|+.++ +++. +.++-+. -.....|+++
T Consensus 377 gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 34443 34555554 66788999998 4553 4444221 1236789999
Q ss_pred CC-CCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 432 PD-GQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 432 pd-g~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++ |.++++=.....||.+++.......
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 97 7666666677889999988766544
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.00093 Score=66.73 Aligned_cols=228 Identities=8% Similarity=0.065 Sum_probs=131.1
Q ss_pred eEEecCC---CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCee
Q 011916 172 NLVDWSS---QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G----QVQVWDGTQCKR 243 (475)
Q Consensus 172 ~~l~ws~---~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g----~v~iwd~~~~~~ 243 (475)
..++++| ++|+++...+.|+.+|..++.+..+.. .......|+|+++|++|+++... + .+.+++. .+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 4467775 356666556889999999888766653 45678899999999977666542 2 2343443 2222
Q ss_pred e--EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCCCEEEEE-eCCCcE
Q 011916 244 V--RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASG-GNDNQL 316 (475)
Q Consensus 244 ~--~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I 316 (475)
. ..+.. ......++++ +.++++-..++.|..++... ...... ..........|+|+|+|++|+.+ ...+.|
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 1 22221 1223445553 45666666778899999873 322111 11222456789999999955554 456789
Q ss_pred EEEECCC--Cce--eEEEecc---------------cccee-EEEEC--------CCCCcEEEEecCCCCCeEEEEECCC
Q 011916 317 LVWNQHS--QQP--TLRLTEH---------------TAAVK-AIAWS--------PHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 317 ~iwd~~~--~~~--~~~~~~h---------------~~~v~-~l~~s--------p~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
..++... +.. +..+.+. -.... .++.. +++. |+++-. ..+.|+.++ .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~--~n~~I~~i~-~~ 370 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDR--ENHCIRILT-PQ 370 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEG--GGTEEEEEC-TT
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEEC--CCcEEEEEC-CC
Confidence 9987653 221 2222211 00122 44443 2343 555543 567888888 45
Q ss_pred CceeeeecC---------C---------CCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 369 GHQLNSVDT---------G---------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 369 ~~~~~~~~~---------~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
|........ . .....+++++++..|+++ ...++.|+.++.
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEcc
Confidence 544333321 1 147788999854455543 555677777764
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.16 E-value=0.0017 Score=68.01 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=136.6
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-eEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR-VRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~-~~~~~~h~~~v~~l 257 (475)
-++.-+....|+..++.............-..+..|+|++.+..|+.+. ..+.|..+++..... ...+...-.....+
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 3566667788888888765322222223456688999999666666554 467899999876532 22333332455666
Q ss_pred EeC--C-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEec
Q 011916 258 AWN--S-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 258 ~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~~~~ 332 (475)
+++ + +++++-...+.|.+.++.. ..........-....+|++.|.+..|+.... .+.|...++...........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 653 4 4555556778999999873 2222233234455778999997666665553 35777777765443333333
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.-.....|++.+++..|+.+-. ..+.|..+|+.......... .......+++..+ .|+.+ ....+.|...|..+
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILACNKYT 243 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEEESSS
T ss_pred CCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEEECCC
Confidence 3456789999998888888765 67889999986543332222 1223456777655 55553 55677888888876
Q ss_pred CceEE
Q 011916 412 MAKVS 416 (475)
Q Consensus 412 ~~~~~ 416 (475)
++...
T Consensus 244 g~~~~ 248 (619)
T 3s94_A 244 GEGLR 248 (619)
T ss_dssp CCCCE
T ss_pred CcccE
Confidence 65433
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.13 E-value=0.001 Score=63.65 Aligned_cols=191 Identities=12% Similarity=0.187 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe------CCC---EEEEEeC---CCcEEEEECCCCCccEEEe
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW------NSR---ILSSGSR---DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~------~~~---~l~sgs~---dg~I~iwd~~~~~~~~~~~ 288 (475)
..+++.....+-+.+||+ +++.+..+.. +++..+.. .+. ++++..+ +.+|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555566788999999 8888888864 44444443 332 3344444 4789999885333334444
Q ss_pred cC------cc-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEEeccccceeEEEECCCCCcEE
Q 011916 289 AG------HK-SEVCGLKW--SHD-DR-ELASGGNDNQLLVWNQH-------SQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 289 ~~------h~-~~V~~l~~--s~~-~~-~lasg~~Dg~I~iwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
.. .. ..+.++++ ++. +. ++++...+|.+..|++. +.+.+.+|.- ...+..++..+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 56777787 674 44 68888889999999983 2344556553 46788999998888777
Q ss_pred EEecCCCCCeEEEEECC-----CCceeeeecCC---CCeeEEEE--cCCCC-eEEEEEecCCCeEEEEECC-CCceEEEe
Q 011916 351 ASGGGTADRCIRFWNTS-----NGHQLNSVDTG---SQVCNLAW--SKNVN-ELVSTHGYSQNQIMVWKYP-SMAKVSTL 418 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~-----~~~~~~~~~~~---~~v~~l~~--s~~~~-~l~~~~g~~dg~I~iwd~~-~~~~~~~l 418 (475)
+.- ++.-|..++.. +++.+..+..+ ..+..|++ .++++ +|+++ +-.++.+.+||.. +.+.+..+
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEEEE
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECCCCCcEEEEE
Confidence 754 67667777755 34556555433 46888888 45566 66664 4467899999996 67777777
Q ss_pred c
Q 011916 419 T 419 (475)
Q Consensus 419 ~ 419 (475)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.13 E-value=0.0014 Score=65.38 Aligned_cols=228 Identities=9% Similarity=0.041 Sum_probs=128.2
Q ss_pred eeEEecCC----CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC----e-EEEEECCCC
Q 011916 171 LNLVDWSS----QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG----Q-VQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~----~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg----~-v~iwd~~~~ 241 (475)
...++|++ ++|+.+...+.|+.++..++.+..+. .......+++|+++|+ |+++...+ . +...+...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 34578886 24444444489999999888877665 3456789999999999 55554322 1 333332211
Q ss_pred ee-eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCcc-EEEec-CccCCEEEEEEcCCCCEEEEE-eCCC
Q 011916 242 KR-VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDY-ICKLA-GHKSEVCGLKWSHDDRELASG-GNDN 314 (475)
Q Consensus 242 ~~-~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~lasg-~~Dg 314 (475)
.. ...+. .-.....++++ +.++++-..++.|..+|... +.. ...+. +....-..|+|+|+++.|+.+ ...+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 01111 11223344453 45555555677888888762 332 11111 112233579999999955555 4567
Q ss_pred cEEEEECCC--Cce--eEEEecc---------------ccceeEEEE---------CCCCCcEEEEecCCCCCeEEEEEC
Q 011916 315 QLLVWNQHS--QQP--TLRLTEH---------------TAAVKAIAW---------SPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 315 ~I~iwd~~~--~~~--~~~~~~h---------------~~~v~~l~~---------sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.|+.++... +.. ...+.+. -.....+++ .+++. |+++-. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~--~n~~I~~~~~ 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDR--DSHTVRVLTP 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEET--TTTEEEEECT
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEEC--CCCEEEEECC
Confidence 899988652 321 1222221 123567888 66665 666543 6788999985
Q ss_pred CCCceeeeecCC------------------CCeeEEEEc-CCCCeEEEEEecCCCeEEEEEC
Q 011916 367 SNGHQLNSVDTG------------------SQVCNLAWS-KNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 367 ~~~~~~~~~~~~------------------~~v~~l~~s-~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+|........+ .....|+++ +++..+++ -..++.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEec
Confidence 55433322111 236678888 44444444 455667777765
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0045 Score=66.51 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=143.9
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC---CccEEEecCccCCEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVC 296 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 296 (475)
+|+.... ..|+..++........+. ....+..|+|+ +.++++-...+.|+.+++... ......+........
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4444443 568888877655444443 34566788885 345555566788888888632 122333443445677
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDRELA-SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+|++.+.++.|+ +-...+.|.+.++........+...-....+|++.|.+..|+.+-.| ..+.|...++........+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEE
Confidence 899988665555 44566899999998655433333344568899999987778887532 2378999998755544444
Q ss_pred cCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEE-eCCCCEEEEec
Q 011916 376 DTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTG-AGDETLRFWNV 451 (475)
Q Consensus 376 ~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~ 451 (475)
... .....|++.+.+..|+.+ -...+.|..+++........+.. .-.....|++. +..|+.+ ...+.|...+.
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred eCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence 333 578899999888888875 44567899999865544443332 22345567763 3345444 45567777776
Q ss_pred CCCCCCC
Q 011916 452 FPSLKAP 458 (475)
Q Consensus 452 ~~~~~~~ 458 (475)
.++....
T Consensus 631 ~tG~~~~ 637 (791)
T 3m0c_C 631 LTGSDVN 637 (791)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6665443
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.10 E-value=0.0055 Score=64.15 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
+|+.+ ....|+..++++......+. ..-..+..++|+ +.++++-..++.|..+++.. ......+........+|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG-SALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC-CCcEEEEeCCCCCcceE
Confidence 45554 44689999998765433332 223467788885 34555556778999998873 23333333333457788
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 299 KWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 299 ~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
++.+.+..| ++-...+.|.+.++........+...-....+|++.|....|+.+--| ..+.|...++...........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEEECC
Confidence 888765555 444556789999987654333333344567899999977778877521 357888888876554444455
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
......|+++++++.|+.+ -...+.|..+|+..... ..+........+|++.. +..+++-...+.|...|..++...
T Consensus 165 ~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp CSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 5678899999998888875 44678899999865443 23333334456787754 344444445778888887666544
Q ss_pred C
Q 011916 458 P 458 (475)
Q Consensus 458 ~ 458 (475)
.
T Consensus 242 ~ 242 (628)
T 4a0p_A 242 T 242 (628)
T ss_dssp E
T ss_pred E
Confidence 3
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.07 E-value=0.0012 Score=63.22 Aligned_cols=182 Identities=11% Similarity=0.192 Sum_probs=121.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC----CC---EEEEEe-C--CCcEEEEECC-CCceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD----DR---ELASGG-N--DNQLLVWNQH-SQQPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~----~~---~lasg~-~--Dg~I~iwd~~-~~~~~~~~ 330 (475)
.+++.....+-+.+||+ .++.++.+.. +.+..+..-|+ |+ ++++.. . +++|.+|++. ....+..+
T Consensus 41 s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 56666777889999999 4666666653 55676666552 22 223333 3 5789999774 22234444
Q ss_pred ec------cc-cceeEEEE--CCC-CC-cEEEEecCCCCCeEEEEECC-------CCceeeeecCCCCeeEEEEcCCCCe
Q 011916 331 TE------HT-AAVKAIAW--SPH-QS-SLLASGGGTADRCIRFWNTS-------NGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 331 ~~------h~-~~v~~l~~--sp~-~~-~ll~sg~Gs~d~~I~iwd~~-------~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
.. .. ..+..+++ +|. +. +++++. .++.+..|++. +++.++.+..++++..+...+....
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 21 11 55677888 775 44 344443 68999999882 3467788888999999999999999
Q ss_pred EEEEEecCCCeEEEEECC-----CCceEEEec-CC-CcceEEEEE--CCCCC-EEEEEe-CCCCEEEEecC
Q 011916 393 LVSTHGYSQNQIMVWKYP-----SMAKVSTLT-GH-SLRVLYLAT--SPDGQ-TIVTGA-GDETLRFWNVF 452 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~-----~~~~~~~l~-~h-~~~V~~l~~--spdg~-~l~s~s-~Dg~I~iW~~~ 452 (475)
|++ +.++..|..|+.. +++.+..+. ++ ...+..|++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999 7777777777754 345555553 22 236888887 56666 566555 67799999996
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.0028 Score=61.39 Aligned_cols=222 Identities=14% Similarity=0.190 Sum_probs=122.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEec---CCCCceEEEEeCCC-----EEEEEeCC------CcE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR--VRTFG---GHQTRAGVLAWNSR-----ILSSGSRD------RNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~-----~l~sgs~d------g~I 273 (475)
.....++|.|+|+ |+++..+|.|.+++ +++. +..+. ........++++++ .|+.+... ..|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998 45556679999998 4432 22221 22346788898653 55555432 567
Q ss_pred EEEECCCCC----c-cEEEec---CccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--------
Q 011916 274 LQHDLRVSS----D-YICKLA---GHKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ-------- 324 (475)
Q Consensus 274 ~iwd~~~~~----~-~~~~~~---~h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~-------- 324 (475)
..++..... + .+..+. ........|+|.|||.+.++.+. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 777775221 1 111132 11123468999999976666432 145666665430
Q ss_pred -----ceeEEEeccccceeEEEECCCCCcEEEEecCCCCC-------eEEEEECCCCc------------------eeee
Q 011916 325 -----QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR-------CIRFWNTSNGH------------------QLNS 374 (475)
Q Consensus 325 -----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-------~I~iwd~~~~~------------------~~~~ 374 (475)
.......++ .....++|+|+...|+++-.| .+. .|.+.. .+. ++..
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEe
Confidence 111111223 235789999943336655432 222 244332 221 2222
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+........++| .+|..+++ ....+.|...++..... ...+..-..++..+++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 233345667777 35555554 55677888887754321 122222346789999999998777654
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.89 E-value=0.014 Score=56.47 Aligned_cols=226 Identities=12% Similarity=0.132 Sum_probs=126.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEec---CCCCceEEEEeCC-----CEEEEEeC----C----Cc
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-RVRTFG---GHQTRAGVLAWNS-----RILSSGSR----D----RN 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~-----~~l~sgs~----d----g~ 272 (475)
.....++|.|+|+ |+++..+|.|.+++ .+++ .+..+. ........|++++ ..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999998 55556669999997 4454 222221 2234678889864 35555443 2 56
Q ss_pred EEEEECCCCC------ccE-EEecC-ccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 011916 273 ILQHDLRVSS------DYI-CKLAG-HKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ------- 324 (475)
Q Consensus 273 I~iwd~~~~~------~~~-~~~~~-h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~------- 324 (475)
|..++..... +.+ ..+.. .......|.|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7777765321 111 11221 1123467999999987766432 145666665432
Q ss_pred -c-eeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC--------C--------ceeeee-cCCCCeeEE
Q 011916 325 -Q-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN--------G--------HQLNSV-DTGSQVCNL 384 (475)
Q Consensus 325 -~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~--------~--------~~~~~~-~~~~~v~~l 384 (475)
. .+. ..++. ....++|+|+...|+++-.|... ..|.+...-. + .++..+ ........+
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 1 122 12333 34689999943346665432111 2233332110 0 122223 234567888
Q ss_pred EEc-------CCCCeEEEEEecCCCeEEEEECCCC-ceE--EEe-cCCCcceEEEEECCCCCEEEEEe
Q 011916 385 AWS-------KNVNELVSTHGYSQNQIMVWKYPSM-AKV--STL-TGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 385 ~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+|. .+|..+++ ....+.|...++... +.. ..+ .+-..++..+++.|||.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 884 45655555 567788998888753 221 233 23356799999999998777664
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.05 Score=60.95 Aligned_cols=264 Identities=8% Similarity=0.053 Sum_probs=152.6
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCeeeEEecC-CCCc
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE------GSYISVGTN-LGQVQVWDGTQCKRVRTFGG-HQTR 253 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd------g~~la~g~~-dg~v~iwd~~~~~~~~~~~~-h~~~ 253 (475)
++++.++.+.++.+..+++.......-...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ....
T Consensus 526 vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~ 605 (1158)
T 3ei3_A 526 VVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII 605 (1158)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCC
T ss_pred EEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCC
Confidence 333356788888777665544433344678999999863 479999997 99999999987666544321 1123
Q ss_pred eEEEE---eCC-CEEEEEeCCCcEEEEECCCC-CccE---EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 254 AGVLA---WNS-RILSSGSRDRNILQHDLRVS-SDYI---CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 254 v~~l~---~~~-~~l~sgs~dg~I~iwd~~~~-~~~~---~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..++. +.+ .+|..|-.||.+.-+.+... +... ....+ ..++.-..+...+..-+.+..+....++--+ ++
T Consensus 606 p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~ 683 (1158)
T 3ei3_A 606 PRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK 683 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS
T ss_pred CcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc
Confidence 33333 333 57889999999877766522 2211 12223 3445444444444433333344555555443 22
Q ss_pred eeEEEeccccce-eEEEECCCC--CcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 326 PTLRLTEHTAAV-KAIAWSPHQ--SSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 326 ~~~~~~~h~~~v-~~l~~sp~~--~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
....- -....+ ....|+... ..++++ .++.++|..+.+. -.++.+..+..+..++++|..+.+++.+...
T Consensus 684 l~~s~-l~~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~ 758 (1158)
T 3ei3_A 684 LVFSN-VNLKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI 758 (1158)
T ss_dssp EEEEE-BSSSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEE
T ss_pred eEEec-cChHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEec
Confidence 22111 111122 233453321 235544 3566888877543 2445566778899999999888766543211
Q ss_pred -----------------------------------------------CCeEEEEECCCCceEEEecC-CCcceEEEE---
Q 011916 401 -----------------------------------------------QNQIMVWKYPSMAKVSTLTG-HSLRVLYLA--- 429 (475)
Q Consensus 401 -----------------------------------------------dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~--- 429 (475)
.+.|++.|-.+++.+..+.- ....+.+++
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~ 838 (1158)
T 3ei3_A 759 EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 838 (1158)
T ss_dssp EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEE
Confidence 12477788777777665543 233455554
Q ss_pred ECCC-CCEEEEEe----------CCCCEEEEecC
Q 011916 430 TSPD-GQTIVTGA----------GDETLRFWNVF 452 (475)
Q Consensus 430 ~spd-g~~l~s~s----------~Dg~I~iW~~~ 452 (475)
|..+ ..+|+.|+ ..|.|+++++.
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 3322 46888876 34789999987
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.88 E-value=0.0066 Score=63.46 Aligned_cols=225 Identities=12% Similarity=0.046 Sum_probs=133.3
Q ss_pred CCeEEEEECCCCe-eeEEecCCCCceEEEEeC--CCEEE-EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 230 LGQVQVWDGTQCK-RVRTFGGHQTRAGVLAWN--SRILS-SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 230 dg~v~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
...|+..++.... ........-.....++|+ +..|+ +-...+.|..+++.........+...-....+|++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 3678888887543 222222334456778775 44454 4445678888888733222333433335789999998655
Q ss_pred EEEE-EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeE
Q 011916 306 ELAS-GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCN 383 (475)
Q Consensus 306 ~las-g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~ 383 (475)
.|+. -...+.|.+.++........+...-....+|++.|.+..|+.+--| ..+.|...++......... ........
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 5554 4566899999998654333333444567899999987778887532 3467887887644333333 23456789
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|+++++++.|+.+ -...+.|..+|+........+.+.-....+|++..+ ..+++-...+.|...|..++...
T Consensus 176 lald~~~~~LY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 176 LTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEETTTTEEEEE-ETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEEccCCEEEEE-eCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 9999988888775 445678999998654433322222223456777655 34444445678888888776654
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.79 E-value=0.027 Score=53.65 Aligned_cols=232 Identities=10% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec----CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG----GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.....+.+|.|.+++..+++| ..|.|. ...+.++.-..+. .....+.++.+++..++.++.++.|.. ....+
T Consensus 33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 33 PTTATILDMSFIDRHHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SCSSCEEEEEESSSSCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE--ESSTT
T ss_pred CCCCcEEEEEECCCCcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE--ECCCC
Confidence 335679999998877777755 467653 3333343222221 224467888887666666666675543 22223
Q ss_pred ccEEEec---CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 283 DYICKLA---GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 283 ~~~~~~~---~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
+.-.... .+...+..|.+.+++..++++ .++.|+.- ...++. ..........+..+++.+++. +++.+ .+
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g---~~ 182 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS---SR 182 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE---TT
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE---CC
Confidence 3222222 234567888887777666655 45654332 222322 222234556788999999887 44544 34
Q ss_pred CeEEE-EEC--CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-C---CCcceEEEEEC
Q 011916 359 RCIRF-WNT--SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-G---HSLRVLYLATS 431 (475)
Q Consensus 359 ~~I~i-wd~--~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~---h~~~V~~l~~s 431 (475)
+.+.. +|- .+.+.+. ......+..+.+.+++..+++ + .+|.+++.+...++.-..+. . +...+..+++.
T Consensus 183 G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp SSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 44443 342 2333332 234467888999998876655 3 56777776432233222222 1 22358899999
Q ss_pred CCCCEEEEEeCCCCEEEEecCCC
Q 011916 432 PDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 432 pdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++..++++ .+|.| ++..+.+
T Consensus 259 ~~~~~~~~g-~~g~i-~~S~DgG 279 (327)
T 2xbg_A 259 TPNEVWLAG-GAGAL-LCSQDGG 279 (327)
T ss_dssp SSSCEEEEE-STTCE-EEESSTT
T ss_pred CCCEEEEEe-CCCeE-EEeCCCC
Confidence 888776655 46766 4444444
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0068 Score=57.48 Aligned_cols=196 Identities=11% Similarity=0.108 Sum_probs=123.0
Q ss_pred CCceeEEecCC--CCEEEEEc-CCeEEEEECCCCcEEEEeeCCC-------CCcEEEEEE---cCCCCEEEEEeC-----
Q 011916 168 DFYLNLVDWSS--QNVLAVGL-GTCVYLWTASNSKVTRLCDLGP-------GDSVCSVQW---TREGSYISVGTN----- 229 (475)
Q Consensus 168 d~~v~~l~ws~--~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~-------~~~V~~v~~---spdg~~la~g~~----- 229 (475)
..|..+++|.. +.++.+.. .+.|..|+...+....+ .+.. ...+..|.| .|+++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 45667799987 34555553 89999999987766555 3332 124689999 688887776442
Q ss_pred --------CCeEEEEECC---CCeeeEEec--C-----------CCCceEEEEeC--CCEEEEEeCC-CcEEEEECCCCC
Q 011916 230 --------LGQVQVWDGT---QCKRVRTFG--G-----------HQTRAGVLAWN--SRILSSGSRD-RNILQHDLRVSS 282 (475)
Q Consensus 230 --------dg~v~iwd~~---~~~~~~~~~--~-----------h~~~v~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~ 282 (475)
+..|..||+. +++.+.... . -......++.+ |+..++++.. +.|...+.. +
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--G 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--S
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--C
Confidence 5779999998 777765543 1 11246677774 7888888877 777766665 2
Q ss_pred ccEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEe--cc---ccceeEE-EECCCCCcE
Q 011916 283 DYICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLT--EH---TAAVKAI-AWSPHQSSL 349 (475)
Q Consensus 283 ~~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~--~h---~~~v~~l-~~sp~~~~l 349 (475)
.....+. ......++|+++|+|+.|++....|.|..+|+..... ..... +. -.....| .--.+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 2222221 1122367999999999999887799999999885322 01111 11 1122332 333466655
Q ss_pred EEEecCCCCCeEEEEECCC
Q 011916 350 LASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~ 368 (475)
+++.. ..+.+.+.+...
T Consensus 249 lV~~~--~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGAR--APYAISFRSWDN 265 (334)
T ss_dssp EEEEE--TTEEEEEECSST
T ss_pred EEEcC--CCCEEEEECCCC
Confidence 66543 455566655444
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.77 E-value=0.0019 Score=60.66 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=113.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCc--c
Q 011916 220 EGSYISVGT-NL-----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSD--Y 284 (475)
Q Consensus 220 dg~~la~g~-~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~--~ 284 (475)
++.+++.|+ .+ ..+.+||+.+.+-... +.........+..++.+++.|+.+ ..+.+||+..... .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 445666666 32 3688899887653332 222222334445577888888765 4688999874330 2
Q ss_pred EEE--ecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 285 ICK--LAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 285 ~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
... +.........+.+ ++.+++.|+.+ +.+.+||+.+.+-... +.........+.+ ++ .+++.||-
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~ 168 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGY 168 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCB
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCC
Confidence 211 1111112222222 56677777643 3688999887653322 1111111122222 33 47777641
Q ss_pred CC---CCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEecCCCcc--
Q 011916 356 TA---DRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVSTLTGHSLR-- 424 (475)
Q Consensus 356 s~---d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l~~h~~~-- 424 (475)
.. -..+.+||+.+.+-...- .....-..++.. ++ .|++..|.. .+.+.+||..+.+-...-.....+
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 11 256889998776433221 111111122222 33 444442332 356899999876543322111111
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
...+.+ ++++++.|+.++ .|.+||+...
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 122222 677777776653 4667776654
No 304
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.71 E-value=0.0036 Score=69.78 Aligned_cols=275 Identities=8% Similarity=0.048 Sum_probs=169.4
Q ss_pred EEecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 173 LVDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 173 ~l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.+.+.++..+++-. +..|.|.|+..+..+....+..+ +.-.+|..+.||.-. ..+++|+|+++...++.+.
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~ 103 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 103 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccc
Confidence 34455566665533 44788889888664433222222 334678888777765 5789999999988887766
Q ss_pred CCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCc----cCCEEEEEEcCCCCEEEEEe-------CCCcE
Q 011916 249 GHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGH----KSEVCGLKWSHDDRELASGG-------NDNQL 316 (475)
Q Consensus 249 ~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~s~~~~~lasg~-------~Dg~I 316 (475)
.. ..|.--.| +.+.|+..+ +..|..|++.....++..+..| ...|..-..+++.++++..| -.|.+
T Consensus 104 ~~-e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 104 MT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred cC-CCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 43 45777777 677776665 4679999997544555444444 45688888889999887654 34788
Q ss_pred EEEECCCCceeEEEeccccceeEEEEC--CCCCcEEEEecC-CCCCeEEEEECCCC---ceee---e--e--c---CCCC
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWS--PHQSSLLASGGG-TADRCIRFWNTSNG---HQLN---S--V--D---TGSQ 380 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~ll~sg~G-s~d~~I~iwd~~~~---~~~~---~--~--~---~~~~ 380 (475)
.+|..+.+. .+.+.+|.+....+... +....+++.+.- ...++++|-++... .... . + . ...-
T Consensus 182 QLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 182 QLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 888887543 34566777665554442 223335544321 12378899888543 1110 0 1 0 1223
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...+..++....++. -+.-|.|++||+.++..+..-+-....|...+-.....-++.....|.|.--.++.....
T Consensus 261 pv~~~vs~k~g~iy~--itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ceEEEeccccCEEEE--EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 456677777777776 447899999999999887655544455544444433333444446666666666554443
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.70 E-value=0.0075 Score=57.20 Aligned_cols=195 Identities=9% Similarity=0.116 Sum_probs=118.2
Q ss_pred CCceEEEEeCC--CEEEEEe-CCCcEEEEECCCCCccEEEecC----c--cCCEEEEEE---cCCCCEEEEEe-------
Q 011916 251 QTRAGVLAWNS--RILSSGS-RDRNILQHDLRVSSDYICKLAG----H--KSEVCGLKW---SHDDRELASGG------- 311 (475)
Q Consensus 251 ~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----h--~~~V~~l~~---s~~~~~lasg~------- 311 (475)
..---++.|+. ..|..++ ..++|..||..........+.. . ...+.+|.| .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33445678863 4555554 7999999998632222222221 1 114689999 68887777644
Q ss_pred ------CCCcEEEEECC---CCceeEEEe--ccc-----------cceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC
Q 011916 312 ------NDNQLLVWNQH---SQQPTLRLT--EHT-----------AAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN 368 (475)
Q Consensus 312 ------~Dg~I~iwd~~---~~~~~~~~~--~h~-----------~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~ 368 (475)
.+..|..||+. +++.+.... ... .....++..++|. .+++++ .. +.|..++...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s--~~~~~I~rV~pdG 168 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFA--LGMPAIARVSADG 168 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEE--ESSCEEEEECTTS
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCC--CCCCeEEEEeCCC
Confidence 26789999999 787766554 111 2478999999998 444443 55 7777777654
Q ss_pred Cceeeee--cC-----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEec--CCC---cceEEE-EECCC
Q 011916 369 GHQLNSV--DT-----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLT--GHS---LRVLYL-ATSPD 433 (475)
Q Consensus 369 ~~~~~~~--~~-----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~--~h~---~~V~~l-~~spd 433 (475)
. .+..+ .. ......|+++|+|+.|++. ...|.|..+|+..... +. +. +.. .....| ..-.+
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~--~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAF--GGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEE--SSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEET
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEE--cCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccC
Confidence 3 22222 11 1236789999999999984 4499999999875433 21 11 211 112332 33347
Q ss_pred CCE-EEEEeCCCCEEEEecC
Q 011916 434 GQT-IVTGAGDETLRFWNVF 452 (475)
Q Consensus 434 g~~-l~s~s~Dg~I~iW~~~ 452 (475)
|+. |++....+.+.+.+-+
T Consensus 245 G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TEEEEEEEETTEEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEECCC
Confidence 777 5555556655554443
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.69 E-value=0.033 Score=53.73 Aligned_cols=236 Identities=11% Similarity=0.094 Sum_probs=127.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-------CCCCceEEEEeCC-----CEEEEEe-C-------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-------GHQTRAGVLAWNS-----RILSSGS-R------- 269 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~-----~~l~sgs-~------- 269 (475)
.....|+|.|+|+.|+++...|.|++++.. ++....+. ........+++++ ..|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356799999999845566677999999853 33221111 1234567888863 4444432 2
Q ss_pred CCcEEEEECCCCC----ccEEEecC------ccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q 011916 270 DRNILQHDLRVSS----DYICKLAG------HKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQQ- 325 (475)
Q Consensus 270 dg~I~iwd~~~~~----~~~~~~~~------h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~~- 325 (475)
...|..+++.... .....+.. ....-..|.|.|||.++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666664221 11111111 1112457999999965555433 2467777765320
Q ss_pred -----------eeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-----------------------
Q 011916 326 -----------PTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----------------------- 370 (475)
Q Consensus 326 -----------~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----------------------- 370 (475)
....+ .++ .....++|.|....|+++-.| .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 233 336789999943346665322 22111222222111
Q ss_pred --------eeeeecCCCCeeEEEEcC-------CCCeEEEEEecCCCeEEEEECCCCceEEE--e-cCCCcceEEEEECC
Q 011916 371 --------QLNSVDTGSQVCNLAWSK-------NVNELVSTHGYSQNQIMVWKYPSMAKVST--L-TGHSLRVLYLATSP 432 (475)
Q Consensus 371 --------~~~~~~~~~~v~~l~~s~-------~~~~l~~~~g~~dg~I~iwd~~~~~~~~~--l-~~h~~~V~~l~~sp 432 (475)
++..+.+......+.|.. ++.++++ ....+.|...++..++.+.. + .....++..+++.|
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 112223344577788864 4555555 56778888888876543322 2 22335799999999
Q ss_pred CCCEEEEEe-CCCCEEEEecC
Q 011916 433 DGQTIVTGA-GDETLRFWNVF 452 (475)
Q Consensus 433 dg~~l~s~s-~Dg~I~iW~~~ 452 (475)
||.++++.. .+| +||.+.
T Consensus 333 dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 333 DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TSCEEEEECSTTE--EEEEEE
T ss_pred CCcEEEEEeCCCC--EEEEEe
Confidence 998666543 344 566654
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00017 Score=76.86 Aligned_cols=222 Identities=12% Similarity=-0.008 Sum_probs=128.7
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCC---CccEEEecCccCCEEEEEEcCC
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVS---SDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.+.|++.++.+.+....+.. ...+..++|+ ...|+.+ ...+.|..+++... ......+........+|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35788888877655444332 2345677775 3455544 45678999988631 1111112111223556788754
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCe
Q 011916 304 -DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQV 381 (475)
Q Consensus 304 -~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v 381 (475)
++++++-...+.|.++++........+.........|++.|.+..|+.+..+ ..+.|..+++........+. .-...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 4444444556789999987654333333333456889999987777776421 23678888775432222221 23456
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..|+|++++..|+.+ -...+.|.++++........+.. .......|++..+ .++++....+.|..++..++.
T Consensus 543 nGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 789999988887775 45678899999865433332221 1223445666443 344455556789888876544
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.63 E-value=0.0054 Score=57.52 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=112.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----eeEEecCCCCceEEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCK-----RVRTFGGHQTRAGVL 257 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~-----~~~~~~~h~~~v~~l 257 (475)
..+++||..+.+...+..+.....-.+++ .-++.+++.|+.+ ..+.+||..+.+ .+..+........++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 47999999998876665433221111222 2357777787765 468999987755 222222222233444
Q ss_pred EeCCCEEEEEeCCC-----cEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCce
Q 011916 258 AWNSRILSSGSRDR-----NILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQP 326 (475)
Q Consensus 258 ~~~~~~l~sgs~dg-----~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~ 326 (475)
..++.+++.|+.++ .+.+||+.... ..+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 110 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 110 TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 55777888877543 57888886332 111222211112222222 67777777754 4688999887653
Q ss_pred eEEE--eccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 TLRL--TEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 ~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
...- .........+.+ +..|++.||... -..+.+||+.+.+-...- .....-..++.. +++ |++. |.
T Consensus 188 ~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~-GG 261 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGR-LYAI-AG 261 (301)
T ss_dssp EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEE-CC
T ss_pred EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCE-EEEE-cC
Confidence 3221 111111122222 334777775111 256899999876533221 111111122222 444 4444 43
Q ss_pred CC-----CeEEEEECCCCc
Q 011916 400 SQ-----NQIMVWKYPSMA 413 (475)
Q Consensus 400 ~d-----g~I~iwd~~~~~ 413 (475)
.+ +.+.+||..+.+
T Consensus 262 ~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCSSSBEEEEEEEETTTTE
T ss_pred cCCCcccccEEEEcCCCCe
Confidence 33 467888887654
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.58 E-value=0.037 Score=53.33 Aligned_cols=163 Identities=9% Similarity=0.020 Sum_probs=99.6
Q ss_pred CCCeEEEEECCC--Ceee-EEecC-----CCCceEEEEe----CCC-EEEEE-eC--CCcEEEEECCCCCccE---EEec
Q 011916 229 NLGQVQVWDGTQ--CKRV-RTFGG-----HQTRAGVLAW----NSR-ILSSG-SR--DRNILQHDLRVSSDYI---CKLA 289 (475)
Q Consensus 229 ~dg~v~iwd~~~--~~~~-~~~~~-----h~~~v~~l~~----~~~-~l~sg-s~--dg~I~iwd~~~~~~~~---~~~~ 289 (475)
.+|.|.++|..+ .+.. ..+.+ .......+.+ ++. +|+++ .. +.+|.+|++...+... ..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999873 2211 12222 1235555665 232 34444 33 5678888876443322 2232
Q ss_pred Cc-cCCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 290 GH-KSEVCGLKWSHDDRELASGG-----------------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 290 ~h-~~~V~~l~~s~~~~~lasg~-----------------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
+. -.....+.+.++|.+.++.. ..|.|+.+|. ++ +..+...-...+.|+|+||++.+++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 21 23578999999998777754 1245666655 32 3333333455689999999998988
Q ss_pred EecCCCCCeEEEEECCC-Cce--eeeecCCCCeeEEEEcC-CCCeEEEE
Q 011916 352 SGGGTADRCIRFWNTSN-GHQ--LNSVDTGSQVCNLAWSK-NVNELVST 396 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~-~~~~l~~~ 396 (475)
+-+ ..+.|..|++.. +.. ...+...+....+++.+ +|+..+++
T Consensus 238 adt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 238 AEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence 865 688999999863 332 22334456678899999 58877763
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.57 E-value=0.013 Score=55.07 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCcEEEEeeCCCC-CcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEe
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPG-DSVCSVQWTREGSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAW 259 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~-~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~ 259 (475)
.+.+.+||..+.+...+-.+... .....+. -++.+++.|+.+ ..+.+||..+.+-... +.........+..
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 35899999999887766543222 1222222 267777888754 5788999888754332 2222223344455
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 011916 260 NSRILSSGSRD------RNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGN---------DNQLLVWNQH 322 (475)
Q Consensus 260 ~~~~l~sgs~d------g~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~---------Dg~I~iwd~~ 322 (475)
++.+++.|+.+ ..+.+||.... ..... +.........+.+ ++++++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTE-SWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 77888888765 46888998733 22211 1111111122222 5667777653 3458899998
Q ss_pred CCceeEEEe--ccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCC-CCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTG-SQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~-~~v~~l~~s~~~~~l~ 394 (475)
+.+-...-. ........+.+ + ..|++.||... -..+.+||+.+.+-... +... .....+.+ ++ .|+
T Consensus 178 ~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~ 251 (306)
T 3ii7_A 178 TETWTELCPMIEARKNHGLVFV--K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVY 251 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEE
T ss_pred CCeEEECCCccchhhcceEEEE--C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEE
Confidence 765322211 11111122222 3 34777764111 24688999887642222 1111 11222222 34 444
Q ss_pred EEEec----CCCeEEEEECCCCc
Q 011916 395 STHGY----SQNQIMVWKYPSMA 413 (475)
Q Consensus 395 ~~~g~----~dg~I~iwd~~~~~ 413 (475)
+..|. ..+.+.+||..+.+
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCe
Confidence 44332 22568899987754
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.56 E-value=0.035 Score=52.27 Aligned_cols=196 Identities=9% Similarity=0.113 Sum_probs=130.2
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCC-CcEEEEeeCC---CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEEC
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASN-SKVTRLCDLG---PGDSVCSVQWTREGSYISVGTN-------LGQVQVWDG 238 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~-~~~~~~~~~~---~~~~V~~v~~spdg~~la~g~~-------dg~v~iwd~ 238 (475)
.|.--.|-..+.++.-.+..||-|+++. ....+.++.. ....|....-+++.++++..+- .|.+++|.+
T Consensus 108 ~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 187 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 187 (365)
T ss_dssp CEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee
Confidence 3555788889888888999999999975 4556666632 1467888888999998776432 378899997
Q ss_pred CCCeeeEEecCCCCceEEEEeCC-----CEEEEEeCC---CcEEEEECCCC--Cc------cEEEec---CccCCEEEEE
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWNS-----RILSSGSRD---RNILQHDLRVS--SD------YICKLA---GHKSEVCGLK 299 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~--~~------~~~~~~---~h~~~V~~l~ 299 (475)
+.+ ..+.++||...-..+..++ .+++.+.+. +.++|.++... +. .+..+. .-.+--.++.
T Consensus 188 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamq 266 (365)
T 2xzh_A 188 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 266 (365)
T ss_dssp TTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEE
T ss_pred ccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEE
Confidence 754 4456778877666665543 244444332 58889888533 11 111111 1234456788
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 300 WSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 300 ~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.++.-..+..-+.-|.|++||+.++.++..-+-....|..-+-......+++.. ..|.|.-..+...
T Consensus 267 vs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vn---r~GqVl~v~v~~~ 333 (365)
T 2xzh_A 267 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEE 333 (365)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEE---TTCEEEEEEECTT
T ss_pred ecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEc---CCCEEEEEEECcc
Confidence 888777888889999999999999999887665566665555444444455543 4555555444433
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.55 E-value=0.0081 Score=56.38 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=110.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--ecCCCCceEEEEeC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~ 260 (475)
..+.+||..+.+...+..+.....-.+++. -++.+++.|+.+ ..+.+||..+.+-... +.........+..+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence 468999999887766644322211112222 267777787754 3588999887654332 22222233444567
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCce
Q 011916 261 SRILSSGSRDR-----NILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGND-------NQLLVWNQHSQQP 326 (475)
Q Consensus 261 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-------g~I~iwd~~~~~~ 326 (475)
+.+++.|+.++ .+.+||+... ..... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSN-EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCC-eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 88888887654 4778887632 22211 1111111222222 56677776642 4588999887653
Q ss_pred eEE--EeccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 TLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 ~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
... +.........+.+ + ..|++.||... ...+.+||+.+.+-... ......-..++.. +++ |++. |.
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-i~v~-GG 259 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGL-LYVV-GG 259 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEE-CC
T ss_pred EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCE-EEEE-CC
Confidence 322 1111111122222 3 34777775111 24689999887643322 1111111112221 344 4444 43
Q ss_pred CC-----CeEEEEECCCCce
Q 011916 400 SQ-----NQIMVWKYPSMAK 414 (475)
Q Consensus 400 ~d-----g~I~iwd~~~~~~ 414 (475)
.+ ..+.+||..+.+-
T Consensus 260 ~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp BCSSSBCCCEEEEETTTTEE
T ss_pred cCCCcccccEEEEcCCCCeE
Confidence 33 3588888876643
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.54 E-value=0.0073 Score=56.83 Aligned_cols=225 Identities=7% Similarity=0.080 Sum_probs=114.1
Q ss_pred CCEEEEEeC--CCeEEEEECCCCeeeE--EecCCCCceEEEEeCCCEEEEEeCC----CcEEEEECCCCCccEEE--ecC
Q 011916 221 GSYISVGTN--LGQVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRILSSGSRD----RNILQHDLRVSSDYICK--LAG 290 (475)
Q Consensus 221 g~~la~g~~--dg~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~--~~~ 290 (475)
+.++++|+. ...+.+||..+.+-.. .+.........+..++.+++.|+.+ ..+.+||.... ..... +..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~ 90 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPT 90 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCc
Confidence 345556654 3578999988765432 2222222334445677888888765 56888888733 22211 111
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCC-----
Q 011916 291 HKSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTA----- 357 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~----- 357 (475)
.......+.+ ++.+++.|+.+ ..+.+||..+.+-...-. ........+.+ ++ .+++.||...
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSG 165 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTC
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcc
Confidence 1112222222 66777787765 468999998765322211 11111112222 33 4777764111
Q ss_pred --CCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EecCCCcceEE
Q 011916 358 --DRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVS--TLTGHSLRVLY 427 (475)
Q Consensus 358 --d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~--~l~~h~~~V~~ 427 (475)
-..+.+||+.+.+-...-. ....-..++.. +++ |++..|.. -..+.+||..+.+-.. .+.........
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 3558899988764322211 11111122222 344 44442322 2468899988764332 22211112222
Q ss_pred EEECCCCCEEEEEeCC-----CCEEEEecCCCC
Q 011916 428 LATSPDGQTIVTGAGD-----ETLRFWNVFPSL 455 (475)
Q Consensus 428 l~~spdg~~l~s~s~D-----g~I~iW~~~~~~ 455 (475)
+.+ ++.+++.|+.+ ..+.+||+....
T Consensus 244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 333 67778888754 356777776543
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.48 E-value=0.0079 Score=56.47 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCccEEE--
Q 011916 221 GSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSDYICK-- 287 (475)
Q Consensus 221 g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~-- 287 (475)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+..++.+++.|+.+ ..+.+||.... .....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTT-EEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCC-ceeeCCC
Confidence 3455555543 3578888887653332 222112223344577788888755 35888888632 22111
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCC---
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA--- 357 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~--- 357 (475)
+.........+.+ ++..++.|+.++ .+.+||+.+.+-... +.........+.+ + ..+++.||...
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G-GLLYAVGGYDVASR 169 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTTT
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C-CEEEEEeCCCCCCC
Confidence 1111111222222 567777787553 578899887653222 1111111122222 3 34777764111
Q ss_pred --CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEecCCCcceEEEE
Q 011916 358 --DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429 (475)
Q Consensus 358 --d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 429 (475)
-..+.+||+.+.+-... +.....-.+++.. ++ .|++..|.. .+.+.+||..+.+-...-.....+...-+
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 24588999887643322 2111111122222 34 444442332 24689999987654322111111111111
Q ss_pred ECCCCCEEEEEeCCC-----CEEEEecCCCC
Q 011916 430 TSPDGQTIVTGAGDE-----TLRFWNVFPSL 455 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg-----~I~iW~~~~~~ 455 (475)
...++++++.|+.++ .+.+||+....
T Consensus 248 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 122677777777654 47888877554
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.46 E-value=0.07 Score=51.41 Aligned_cols=218 Identities=10% Similarity=0.084 Sum_probs=116.2
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC---CCEEEEEeC-C-----CeEEEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE---GSYISVGTN-L-----GQVQVW 236 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd---g~~la~g~~-d-----g~v~iw 236 (475)
...++|.++ .++++..++.|++++ +++...+..+ ........|+|+|+ +..|.++.. . +.|..|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 456888887 677777789999998 4543333222 12457899999998 555555543 2 578888
Q ss_pred ECCCCe-----e-eEEec---CCCCceEEEEe--CCCEEEEEeC-------------CCcEEEEECCCC-----------
Q 011916 237 DGTQCK-----R-VRTFG---GHQTRAGVLAW--NSRILSSGSR-------------DRNILQHDLRVS----------- 281 (475)
Q Consensus 237 d~~~~~-----~-~~~~~---~h~~~v~~l~~--~~~~l~sgs~-------------dg~I~iwd~~~~----------- 281 (475)
+...+. . +..+. +.......++| ++.++++.+. .|.|.-++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 876431 1 12232 11112346777 4555555332 145555555420
Q ss_pred -CccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCc--------EEEEECCC----------------CceeEEEecccc
Q 011916 282 -SDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQ--------LLVWNQHS----------------QQPTLRLTEHTA 335 (475)
Q Consensus 282 -~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~--------I~iwd~~~----------------~~~~~~~~~h~~ 335 (475)
........++ .....++|+| +++++++-...+. |.+..... ..++..+. +..
T Consensus 191 ~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGF 268 (352)
T ss_dssp TSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred CCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCC
Confidence 0111111223 2356789999 6665554332222 33322111 11233332 223
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------eeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------QLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
....++| .++. ++++.. ..+.|...++.... ....+.....+..+++.|+|..+++.
T Consensus 269 ap~G~~~-~~G~-l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRGD-LYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETTE-EEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECCE-EEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 4567777 3454 555443 56778877765432 11122334678899999999766663
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.42 E-value=0.077 Score=51.99 Aligned_cols=195 Identities=9% Similarity=0.118 Sum_probs=132.8
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCC-CcEEEEeeCC---CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASN-SKVTRLCDLG---PGDSVCSVQWTREGSYISVGTN-------LGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~-~~~~~~~~~~---~~~~V~~v~~spdg~~la~g~~-------dg~v~iwd~~ 239 (475)
|.--.|-..+.++.-.+..||-|++++ ....+.++.. ....|....-+++.++++..+- .|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp CCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred ceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 444678888899999999999999975 3556666632 1467888888999998875432 4788999977
Q ss_pred CCeeeEEecCCCCceEEEEeCC-----CEEEEEeCC---CcEEEEECCCC--Cc------cEEEec---CccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-----RILSSGSRD---RNILQHDLRVS--SD------YICKLA---GHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~--~~------~~~~~~---~h~~~V~~l~~ 300 (475)
.+ ..+.++||......+..+| .+++.+.+. +.++|.++... +. .+..+. .-.+--.++..
T Consensus 188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 54 4466788887777666654 355555543 78999998543 11 111111 12344567888
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
++.-..+..-+.-|.|++||+.++.+++.-+-....|..-+-......+++.. ..|.|.--.+...
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn---r~GqVl~v~v~e~ 332 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEE 332 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTCEEEEEEECTT
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc---cCceEEEEEEccc
Confidence 88878888889999999999999999887665566665555555555555554 4665555554443
No 317
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.41 E-value=0.088 Score=49.54 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=140.4
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeEEecCCCC
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--------------GQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--------------g~v~iwd~~~~~~~~~~~~h~~ 252 (475)
++.|+..+.+.....++.. +. +--++++|.+|+.+... ..|+..++...+...... .
T Consensus 36 ~~~ly~~~~dg~~~~~l~~----~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~ 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSN----DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D 106 (302)
T ss_dssp TTEEEEEETTSCSCEEEEE----EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S
T ss_pred CceEEEEcCCCCCCEEccC----Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C
Confidence 5778888887777666653 12 33467899988887653 357777777665433222 2
Q ss_pred ceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEE
Q 011916 253 RAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 253 ~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~ 329 (475)
....++..++.|+-.. .++.-.||-+...+.....+..+.. ..++++++.|+-.+. ...|++-++..+.....
T Consensus 107 ~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 2335666787777665 4455555544444444455554433 456778888886665 57888888877654433
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.+ ... ..+.|++.+|+.+..+ ....|..-++......... ...+ ..|+|+++.|+.+.....+.|...++
T Consensus 183 ~~~---~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 183 YDC---NCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp ECS---CEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred eCC---Ccc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence 332 222 3456999988887531 2246777777665533322 2233 34888899988743334567888887
Q ss_pred CCCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
..........+ .+..+ ++.+.+|+-.. ..+.|..-++..
T Consensus 254 DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 254 DGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp TSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEESSS
T ss_pred CCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEECCC
Confidence 65433322222 23444 34566666554 345555445443
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.36 E-value=0.014 Score=55.27 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=95.3
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeC----C-------CeEEEEECCCCeeeEE--
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTN----L-------GQVQVWDGTQCKRVRT-- 246 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~----d-------g~v~iwd~~~~~~~~~-- 246 (475)
++..|. ..+.+||..+++... ..+.. ...........++..++.|+. + ..+.+||..+.+-...
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344443 789999999998754 33321 122223333457888888874 1 1277889887654322
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCC--------CcEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeC-C--
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRD--------RNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGN-D-- 313 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~-D-- 313 (475)
+.........+..++.+++.|+.+ ..+.+||.... .... .+.........+. .++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF-KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCC-cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 211111223344577777777743 45888888732 2111 1111111122222 35667777775 2
Q ss_pred ---CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011916 314 ---NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTAD---RCIRFWNTSNGH 370 (475)
Q Consensus 314 ---g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d---~~I~iwd~~~~~ 370 (475)
+.+.+||..+.+-... +........++.+ ++ .|++.||-..+ ..+.+||+.+.+
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 4689999887643221 1111111122222 33 47777752111 268899988764
No 319
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.0092 Score=60.13 Aligned_cols=158 Identities=10% Similarity=0.087 Sum_probs=99.6
Q ss_pred CEEEEEEcC-CCCEEE-EEeCCCcEEEEECCCCceeEEEecc---ccceeEEEE-------CCCCCcEEEEecCC----C
Q 011916 294 EVCGLKWSH-DDRELA-SGGNDNQLLVWNQHSQQPTLRLTEH---TAAVKAIAW-------SPHQSSLLASGGGT----A 357 (475)
Q Consensus 294 ~V~~l~~s~-~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~~h---~~~v~~l~~-------sp~~~~ll~sg~Gs----~ 357 (475)
....|+|+| ++..|+ +-...+.|++.|+..+......... ......|+| ++++.+|+++.... .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 477899998 344444 4444467999999887655443321 235789999 99999777775311 0
Q ss_pred CCeEEEEECCC-Ccee-----eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-------CCce----------
Q 011916 358 DRCIRFWNTSN-GHQL-----NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-------SMAK---------- 414 (475)
Q Consensus 358 d~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-------~~~~---------- 414 (475)
...|.+++... +... ..+........++++|++..|+++ ...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-ECCCCEEEEEecccccccccCceeeccccccccc
Confidence 12377776443 2221 222223345678899976666654 5678899999987 4442
Q ss_pred ----EEEecCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCC
Q 011916 415 ----VSTLTGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFP 453 (475)
Q Consensus 415 ----~~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~ 453 (475)
+..+ +.......|+|+|+|.+|+.+ +....|+.++...
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 2222 233456899999999965554 4566787766654
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.34 E-value=0.12 Score=49.51 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=125.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEe----cCCCCceEEEEeCC-----CEEEEE---eCCCcEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTF----GGHQTRAGVLAWNS-----RILSSG---SRDRNIL 274 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~----~~h~~~v~~l~~~~-----~~l~sg---s~dg~I~ 274 (475)
-.....|+|.|||+++++-...|.|++++..+++.. ..+ .........|++++ ..|... ..+..|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 356789999999997666655899999986655432 222 12345678899864 344432 2345566
Q ss_pred EEECCCC---------CccE-EEec-CccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 011916 275 QHDLRVS---------SDYI-CKLA-GHKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ------ 324 (475)
Q Consensus 275 iwd~~~~---------~~~~-~~~~-~h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~------ 324 (475)
-|.+... .+.+ ..+. .....-..|.|.|||.+.++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6655421 1111 1222 11123467999999987777542 245555555422
Q ss_pred ---ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------------------eeeeecCC-CCee
Q 011916 325 ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------------QLNSVDTG-SQVC 382 (475)
Q Consensus 325 ---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------------~~~~~~~~-~~v~ 382 (475)
..+.. .+|. ....++|+|++. |+++-.| .|+.-.|--+..|. ++..+.+. ....
T Consensus 191 f~~~~i~a-~G~R-Np~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 191 FPGSPVYS-YGHR-NVQGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp STTCCEEE-BCCS-BCCEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCeEEe-eCCC-CcceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 11211 2343 356899999876 5555422 23322222222221 12222222 3556
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.++|.. +..++. ....+.|....+.... ....+.+...++..|+..|||.++++..
T Consensus 267 G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 777763 444444 5566677766665432 2233445567899999999998776654
No 321
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.33 E-value=0.044 Score=51.74 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=91.4
Q ss_pred CeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCeeeEE--ecCCCCc
Q 011916 188 TCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTN----LG-------QVQVWDGTQCKRVRT--FGGHQTR 253 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~----dg-------~v~iwd~~~~~~~~~--~~~h~~~ 253 (475)
..+..||..+.+.... .... ...........++..++.|+. ++ .+.+||..+.+-... +......
T Consensus 24 ~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4689999999887653 2221 112222233457888888873 12 177888877654332 2222222
Q ss_pred eEEEEeCCCEEEEEeCC-------CcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeC------CCcEEE
Q 011916 254 AGVLAWNSRILSSGSRD-------RNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGN------DNQLLV 318 (475)
Q Consensus 254 v~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~------Dg~I~i 318 (475)
......++.+++.|+.+ ..+.+||... ...... +......-..+. .++.+++.|+. -+.+.+
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVA-AKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTT-TEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCC-CCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEE
Confidence 33444577888888764 2477888863 222211 111111111222 36667777764 246899
Q ss_pred EECCCCceeEEE--eccccceeEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011916 319 WNQHSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGGTAD---RCIRFWNTSNGH 370 (475)
Q Consensus 319 wd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~d---~~I~iwd~~~~~ 370 (475)
||+.+.+-...- ........++.+ ++ .|++.||...+ ..+.+||+.+.+
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EcCCCCEEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 999876532221 111111122222 33 47777642112 457789988764
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.24 E-value=0.034 Score=52.42 Aligned_cols=215 Identities=7% Similarity=-0.031 Sum_probs=120.5
Q ss_pred cCCCCEEEEEeC--CCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCC--------------CcEEEEECCCC
Q 011916 218 TREGSYISVGTN--LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRD--------------RNILQHDLRVS 281 (475)
Q Consensus 218 spdg~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--------------g~I~iwd~~~~ 281 (475)
+.+|.+|+.... ++.|...+.+... ...+.. ..+..+..+++.|+-+... ..|+..++...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 345666666542 4556666644333 222221 2244555566666555432 35666666532
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGG----NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~----~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
....+.... +..|++++++|+-.. ....|+..++.... ...+..+.. .+|+++++.|+.+.. .
T Consensus 99 --~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~--g 165 (302)
T 3s25_A 99 --GSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNP--K 165 (302)
T ss_dssp --CCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECT--T
T ss_pred --cceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeC--C
Confidence 223332221 236777888888776 33456666666443 344544433 456788998888753 4
Q ss_pred CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEE
Q 011916 358 DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
...|...++..+.....+. +... ..+.|++..|+-+.......|..-++.... ...+.. ..+ ..|+|++..|
T Consensus 166 ~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~I 237 (302)
T 3s25_A 166 NGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLI 237 (302)
T ss_dssp TCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEE
T ss_pred CceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEE
Confidence 6789999987765544333 2222 346699999988644334577777776554 333432 223 3477788888
Q ss_pred EEEeC--CCCEEEEecCCCCC
Q 011916 438 VTGAG--DETLRFWNVFPSLK 456 (475)
Q Consensus 438 ~s~s~--Dg~I~iW~~~~~~~ 456 (475)
+-++. .+.|..-+++...+
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r 258 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGF 258 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCC
T ss_pred EEEECCCCcEEEEEECCCCcc
Confidence 76532 34555556655443
No 323
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.24 E-value=0.23 Score=52.98 Aligned_cols=228 Identities=16% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe-cCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...|.+|.-..+| +|.+|+.+| +..||-...+..... ......|.++.-+ ...|..|+.+| +..||... .....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~-~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRA-DRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTT-TEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCC-CEEEC
Confidence 4679999887777 477788887 556774332211111 1123468887764 46777777665 78899863 22111
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
........|.++.. .+| .|..++.+ -|..+|..+++. ..+.. ....|.++....++...+.+ . +-|
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~-~Gl 167 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYVGT----Y-NGL 167 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEEEE----T-TEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEEEe----C-CCH
Confidence 11112235777754 344 56666665 688899876553 23311 13468888888888744433 3 457
Q ss_pred EEEECCCCceeeee-c-----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 362 RFWNTSNGHQLNSV-D-----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 362 ~iwd~~~~~~~~~~-~-----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
..+|..+++..... . ....|.++....++..|.+ |.. +.|..+|..+.+...........|.++....+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi--gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI--GTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE--EEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE--EEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 78887766533211 1 1124778888777776555 433 4688888776543221111234588888888887
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
+.+. +.+ -|.+++....
T Consensus 245 lWig-T~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 245 LLAG-TDN-GLYVYHNDTT 261 (758)
T ss_dssp EEEE-ETT-EEEEECCTTS
T ss_pred EEEE-eCC-ceeEEecCCC
Confidence 6654 444 4777776543
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.24 E-value=0.019 Score=54.06 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=111.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----C-----CeEEEEECCCCeeeEE--ecCCCCceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----L-----GQVQVWDGTQCKRVRT--FGGHQTRAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~ 256 (475)
..+.+||..+.+...+-.+.....-.+++. -++.+++.|+. + ..+.+||..+.+-... +.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 479999999988776644322211112222 26777777765 2 4588999887653322 2222223344
Q ss_pred EEeCCCEEEEEeCC-----CcEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 011916 257 LAWNSRILSSGSRD-----RNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQ 324 (475)
Q Consensus 257 l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~ 324 (475)
+..++.+++.|+.+ ..+.+||+... .... .+......-..+.+ ++.+++.|+.+ +.+.+||+.+.
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCC-eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 45577888887754 35788888632 2111 11111111222233 56677777654 46899998876
Q ss_pred ceeEE--EeccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEE
Q 011916 325 QPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 325 ~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+-... +.........+.+ +..|++.||... -..+.+||+.+.+-... +.....-..++.. ++ .|++..
T Consensus 195 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~G 269 (308)
T 1zgk_A 195 EWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QG-RIYVLG 269 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEC
T ss_pred eEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CC-EEEEEc
Confidence 43221 1111111122233 344777775111 25689999887643322 1111111122222 33 444442
Q ss_pred ecC----CCeEEEEECCCCc
Q 011916 398 GYS----QNQIMVWKYPSMA 413 (475)
Q Consensus 398 g~~----dg~I~iwd~~~~~ 413 (475)
|.. ...+.+||..+.+
T Consensus 270 G~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 270 GYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBCSSCBCCEEEEEETTTTE
T ss_pred CcCCCcccceEEEEcCCCCE
Confidence 322 2457888887654
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.20 E-value=0.33 Score=51.79 Aligned_cols=264 Identities=10% Similarity=0.035 Sum_probs=150.6
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG- 248 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~- 248 (475)
.+.++.-..+..|-++.++.++.||..+.+...... .....|.++.. .+| .|.+|+.+ -|..+|..+++......
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~~-~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPET-DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECCCSC-CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECccc-CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 456655555544444456679999998875433111 12345777754 344 57778776 58889987655433211
Q ss_pred ---CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecC------ccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 249 ---GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAG------HKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 249 ---~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.....|.++..+ ...|..|+.+ -|..++... .. ...+.. ....|.++....++..|..|+. +-|..
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~ 215 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ 215 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence 123467888775 4555556654 477777652 22 222211 1224888888777776555664 45888
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeeEEEEcCCC
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQVCNLAWSKNV 390 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~~ 390 (475)
+|..+++...........|.++....+|...+.+ ++-+.+++..+++...... ....|.++....+|
T Consensus 216 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 216 YFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-----DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-----TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred EcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-----CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence 9987765322111124568888888888744443 3458888887665432211 12358888888888
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEec-----CCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
...+. ...| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 291 ~lWiG---T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 291 NIWLG---TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CEEEE---ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred CEEEE---eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 76664 3445 5554432211111111 12346888888888876554 4555 5555443
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.04 E-value=0.022 Score=53.58 Aligned_cols=225 Identities=11% Similarity=0.087 Sum_probs=109.9
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeC----C-----CcEEEEECCCCCcc
Q 011916 220 EGSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSR----D-----RNILQHDLRVSSDY 284 (475)
Q Consensus 220 dg~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~----d-----g~I~iwd~~~~~~~ 284 (475)
++.+++.|+.+ ..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+... ..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT-EE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC-eE
Confidence 55666666632 3588899877654332 22111222334457777777776 2 46788888632 21
Q ss_pred EEE--ecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 285 ICK--LAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 285 ~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
... +.........+.+ ++++++.|+.+ ..+.+||..+.+-... +.........+.+ +..|++.||-
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~ 177 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGF 177 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCB
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCC
Confidence 111 1111112222233 66677777643 4688999887643221 1111111122223 3447777651
Q ss_pred CC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEE--ecCCCcc
Q 011916 356 TA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVST--LTGHSLR 424 (475)
Q Consensus 356 s~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~--l~~h~~~ 424 (475)
.. -..+.+||+.+.+-... +.....-.+++.. ++ .|++..|.. ...+.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 11 24688999877643222 1111111122222 34 444442332 25689999887654322 1111111
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
...+.+ ++++++.|+.++ .|.+||+...
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 122222 677777776543 4667776654
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.01 E-value=0.36 Score=48.79 Aligned_cols=269 Identities=13% Similarity=0.115 Sum_probs=154.9
Q ss_pred CceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-C-----------------------CCCc
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-G-----------------------PGDS 211 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~-----------------------~~~~ 211 (475)
..++.-+|+-.|+||.. .++|..|.|+|+-+.+++..+.+.. . ..+.
T Consensus 57 a~k~~v~pG~~Deyy~f---------~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD 127 (638)
T 3sbq_A 57 KQKIHVGPGELDDYYGF---------WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGD 127 (638)
T ss_dssp -CCCCCCTTCCCSEEEE---------EECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCC
T ss_pred ccccccCCCCcccEEEE---------eecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCC
Confidence 45667777777777743 4556678888888888777665532 0 0011
Q ss_pred E--EEEEEcC---CCCEEEEEeC-CCeEEEEECCCCeeeEEecC-CCCceEEEEe----CCCEEEEEeC-------CCcE
Q 011916 212 V--CSVQWTR---EGSYISVGTN-LGQVQVWDGTQCKRVRTFGG-HQTRAGVLAW----NSRILSSGSR-------DRNI 273 (475)
Q Consensus 212 V--~~v~~sp---dg~~la~g~~-dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~----~~~~l~sgs~-------dg~I 273 (475)
. ..+++.. ||+||++-.. +..|-..++...++-+.+.- ....+..+.+ +-.+++.+++ ||..
T Consensus 128 ~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~ 207 (638)
T 3sbq_A 128 CHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV 207 (638)
T ss_dssp CCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc
Confidence 1 1344432 6788888764 57788889888887766652 3445666666 3367777664 3332
Q ss_pred EEEECCCCCcc--EEEecCcc----------CCEEEEEEcCCCCEEEEEeCC---------------CcEEEEEC-----
Q 011916 274 LQHDLRVSSDY--ICKLAGHK----------SEVCGLKWSHDDRELASGGND---------------NQLLVWNQ----- 321 (475)
Q Consensus 274 ~iwd~~~~~~~--~~~~~~h~----------~~V~~l~~s~~~~~lasg~~D---------------g~I~iwd~----- 321 (475)
. .+....+. ...+.+.+ +..-.+...++|.+.++.+.. ..+.++++
T Consensus 208 ~--~~~~~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~ 285 (638)
T 3sbq_A 208 F--DLQDENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA 285 (638)
T ss_dssp C--CTTSTTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH
T ss_pred c--ccCChhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH
Confidence 1 01111111 00111111 112233446667776665431 12444443
Q ss_pred --------------------CC----CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC------c-
Q 011916 322 --------------------HS----QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG------H- 370 (475)
Q Consensus 322 --------------------~~----~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~------~- 370 (475)
+. +..+..+-.-......+..+|||++++++|. .+.++.++|+... +
T Consensus 286 ~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~ 363 (638)
T 3sbq_A 286 AVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKL 363 (638)
T ss_dssp HHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCC
T ss_pred HHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccc
Confidence 22 1111111122234467889999999999865 8999999998742 1
Q ss_pred ------eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceEEEecCCCcceEEEEE----
Q 011916 371 ------QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----------AKVSTLTGHSLRVLYLAT---- 430 (475)
Q Consensus 371 ------~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~---- 430 (475)
.....+.+-.....+|.++|. .++ +-+-|.+|..|++... ..+..+.-|-.+- .+.-
T Consensus 364 ~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYT-tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~ge 440 (638)
T 3sbq_A 364 ADPRDVIVGEPELGLGPLHTTFDGRGN-AYT-TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCE 440 (638)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSSE-EEE-EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTT
T ss_pred cCcccceEeeccCCCcccEEEECCCCc-eEe-eeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCc
Confidence 134455677788999999993 333 2788999999998643 3455555454332 2222
Q ss_pred --CCCCCEEEEE
Q 011916 431 --SPDGQTIVTG 440 (475)
Q Consensus 431 --spdg~~l~s~ 440 (475)
.+||++|++.
T Consensus 441 t~~~dGk~lv~l 452 (638)
T 3sbq_A 441 TNEADGKWLVAL 452 (638)
T ss_dssp STTCCSCEEEEE
T ss_pred cCCCCccEEEEe
Confidence 4677777776
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.99 E-value=0.24 Score=47.63 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=101.0
Q ss_pred CCCcEEEEECCCCCccEEE--ecC-----ccCCEEEEEEcC--CCC-EEEEEe-C--CCcEEEEECCCCce----eEEEe
Q 011916 269 RDRNILQHDLRVSSDYICK--LAG-----HKSEVCGLKWSH--DDR-ELASGG-N--DNQLLVWNQHSQQP----TLRLT 331 (475)
Q Consensus 269 ~dg~I~iwd~~~~~~~~~~--~~~-----h~~~V~~l~~s~--~~~-~lasg~-~--Dg~I~iwd~~~~~~----~~~~~ 331 (475)
.+|.|.++|.......... +.+ ..-...+|.+.+ ++. +|+++. . +..|.+|++..... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743222222 222 234677888766 454 444442 2 45778877764322 22232
Q ss_pred cc-ccceeEEEECCCCCcEEEEecC---------------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 332 EH-TAAVKAIAWSPHQSSLLASGGG---------------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 332 ~h-~~~v~~l~~sp~~~~ll~sg~G---------------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
+. -...+++++.++|. ++++... ...+.|..+|. ++.......-.....++|+||++.|++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 21 24578999999988 4444321 01355666665 333222333356788999999999888
Q ss_pred EEecCCCeEEEEECCC-Cce--EEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 396 THGYSQNQIMVWKYPS-MAK--VSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
+ .+..+.|..|++.. ++. ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus 238 a-dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 A-ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E-EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred E-eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 5 44678999999863 322 2233 2245678899999 59888766544
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.94 E-value=0.072 Score=50.14 Aligned_cols=208 Identities=9% Similarity=0.072 Sum_probs=98.7
Q ss_pred EEEEEeCCCeEEEEECCCCeeeE-EecCC--CCceEEEEeCCCEEEEEeC-----C------CcEEEEECCCCCccEEEe
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVR-TFGGH--QTRAGVLAWNSRILSSGSR-----D------RNILQHDLRVSSDYICKL 288 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~-~~~~h--~~~v~~l~~~~~~l~sgs~-----d------g~I~iwd~~~~~~~~~~~ 288 (475)
+++.|+ ..+.+||..+.+-.. .+... ......+..++.+++.|+. . ..+.+||... ... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~-~~W-~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD-SEW-LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT-TEE-EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC-CeE-EEC
Confidence 344555 579999998876433 22211 1222233346788888873 1 1267788763 222 222
Q ss_pred cCcc---CCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 289 AGHK---SEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 289 ~~h~---~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
..-. .....+.+ ++..++.|+.+ +.+.+||..+.+-... +.........+. -++ .+++.||.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~ 157 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGK 157 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCB
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCC
Confidence 1111 11112222 56677777732 4689999987643211 111111111222 233 47777751
Q ss_pred CC----CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecCCC----eEEEEECCCCceEEEecCCCcc-
Q 011916 356 TA----DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYSQN----QIMVWKYPSMAKVSTLTGHSLR- 424 (475)
Q Consensus 356 s~----d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~~~~~l~~h~~~- 424 (475)
.. -..+.+||..+.+-... +.....-..++.. ++ .|++..|..+. .+.+||..+.+-...-.....+
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 11 24689999887642221 1111111122222 34 44444343332 5888998776443322111111
Q ss_pred -eEEEEECCCCCEEEEEeCC
Q 011916 425 -VLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 425 -V~~l~~spdg~~l~s~s~D 443 (475)
...+.+ ++++++.|+.+
T Consensus 236 ~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE--TTEEEEEEEEE
T ss_pred ceeEEEE--CCEEEEECCcc
Confidence 122223 66777777764
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.88 E-value=0.052 Score=52.11 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCEEEEEc--CCeEEEEECCC--CcEEEEeeCC-CC-CcEEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 011916 178 SQNVLAVGL--GTCVYLWTASN--SKVTRLCDLG-PG-DSVCSVQWTREGSYISVGTN-L---------GQVQVWDGTQC 241 (475)
Q Consensus 178 ~~~~la~~~--~~~V~lw~~~~--~~~~~~~~~~-~~-~~V~~v~~spdg~~la~g~~-d---------g~v~iwd~~~~ 241 (475)
.+.+++.|. ++.++++|..+ .+...+..+. .. ....++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 445545443 46899999974 6665554433 22 12222222 5777777765 2 46889998876
Q ss_pred eeeEE--ec-CCCCceEEEEeCCCEEEEEeCC
Q 011916 242 KRVRT--FG-GHQTRAGVLAWNSRILSSGSRD 270 (475)
Q Consensus 242 ~~~~~--~~-~h~~~v~~l~~~~~~l~sgs~d 270 (475)
+-... +. .......++..++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 54332 22 1122233455688888888865
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.85 E-value=0.45 Score=47.42 Aligned_cols=103 Identities=10% Similarity=0.040 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEecC------CCCceEEEEeC-----CCEEEEEeC-------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFGG------HQTRAGVLAWN-----SRILSSGSR------- 269 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~~------h~~~v~~l~~~-----~~~l~sgs~------- 269 (475)
....+|+|.|+|+++++-...+.|.+++..+++.. ..+.. .......|+|+ +..|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999986665544357888886555432 22221 23566789997 445544432
Q ss_pred ------CCcEEEEECCCCC------ccEE-EecC-ccCCEEEEEEcCCCCEEEEEeC
Q 011916 270 ------DRNILQHDLRVSS------DYIC-KLAG-HKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 270 ------dg~I~iwd~~~~~------~~~~-~~~~-h~~~V~~l~~s~~~~~lasg~~ 312 (475)
...|.-+++.... +.+. .+.. .......|.|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1345555543211 1111 1221 1234789999999987776553
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.074 Score=52.02 Aligned_cols=141 Identities=9% Similarity=0.114 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC---CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP---GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------------ 242 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~---~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------------ 242 (475)
.+.-+.+..++.|+.-++..+..-+.+...+ -+.|..+..+|+|++||+.+. ..|.|-.+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccc
Confidence 3455666667889988887554445555442 336788999999999999876 578888876321
Q ss_pred eeEEecC------CCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEec---------CccCCEEEEEEcC
Q 011916 243 RVRTFGG------HQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLA---------GHKSEVCGLKWSH 302 (475)
Q Consensus 243 ~~~~~~~------h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~s~ 302 (475)
..+.+.- ...+|..+.|+ +..|++-..|+.|++||+.........+. .....|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1223331 35679999996 47999999999999999985332111222 2236799999999
Q ss_pred CCCEEEEEe--CCCcEEEE
Q 011916 303 DDRELASGG--NDNQLLVW 319 (475)
Q Consensus 303 ~~~~lasg~--~Dg~I~iw 319 (475)
++-.|...+ ..|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 887666654 77887753
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.71 E-value=0.026 Score=54.20 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--C--eeeEEec-CCCCceEEEEeCCCEEEEEeC-C---------CcEEEEECCCCCc
Q 011916 220 EGSYISVGTN-LGQVQVWDGTQ--C--KRVRTFG-GHQTRAGVLAWNSRILSSGSR-D---------RNILQHDLRVSSD 283 (475)
Q Consensus 220 dg~~la~g~~-dg~v~iwd~~~--~--~~~~~~~-~h~~~v~~l~~~~~~l~sgs~-d---------g~I~iwd~~~~~~ 283 (475)
++++++.|+. ...+.+||..+ . +.+..+. .......++..++.+++.|+. + ..+.+||+... .
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~-~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN-S 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT-E
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC-c
Confidence 4555555543 24688888763 2 2222222 122223344557777777776 2 46888888732 2
Q ss_pred cEEE--ec-CccCCEEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 011916 284 YICK--LA-GHKSEVCGLKWSHDDRELASGGND---------------------------------------NQLLVWNQ 321 (475)
Q Consensus 284 ~~~~--~~-~h~~~V~~l~~s~~~~~lasg~~D---------------------------------------g~I~iwd~ 321 (475)
.... +. .......++. .++++++.|+.+ +.+.+||.
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 2111 11 1111222222 467788888764 57899999
Q ss_pred CCCceeEEEecc-ccce-eEEEECCCCCcEEEEecCC----CCCeEEEEEC--CCCc--eeeeecCCC-CeeEEEEcCCC
Q 011916 322 HSQQPTLRLTEH-TAAV-KAIAWSPHQSSLLASGGGT----ADRCIRFWNT--SNGH--QLNSVDTGS-QVCNLAWSKNV 390 (475)
Q Consensus 322 ~~~~~~~~~~~h-~~~v-~~l~~sp~~~~ll~sg~Gs----~d~~I~iwd~--~~~~--~~~~~~~~~-~v~~l~~s~~~ 390 (475)
.+.+-...-... .... .+++.. +..|++.||.. ....+.+||+ .+.+ .+..+.... .....+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 876533221111 1111 222222 33477776411 1345777876 3332 111111111 11111222234
Q ss_pred CeEEEEEecCC---------------------CeEEEEECCCC--ceEEEecCCCcceEEEEECCCCCEEEEEeCCC---
Q 011916 391 NELVSTHGYSQ---------------------NQIMVWKYPSM--AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE--- 444 (475)
Q Consensus 391 ~~l~~~~g~~d---------------------g~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--- 444 (475)
+ |++..|... ..+.+||..+. +.+..+......-..+ ..++++++.|+.++
T Consensus 254 ~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 S-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp E-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGC
T ss_pred E-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCC
Confidence 4 444323211 25788998764 3444443222222222 23778888888653
Q ss_pred ---CEEEEecCCCCCCCC
Q 011916 445 ---TLRFWNVFPSLKAPA 459 (475)
Q Consensus 445 ---~I~iW~~~~~~~~~~ 459 (475)
.|.++++++++....
T Consensus 331 ~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEEEC-CCSCEEE
T ss_pred EeeeEEEEEEcCcEeEee
Confidence 345557776665443
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.68 E-value=0.081 Score=49.87 Aligned_cols=221 Identities=10% Similarity=0.128 Sum_probs=103.6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeE-EecCCC--CceEEEEeCCCEEEEEeC----CC-------cEEEEECCCCCccEEEe
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVR-TFGGHQ--TRAGVLAWNSRILSSGSR----DR-------NILQHDLRVSSDYICKL 288 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~-~~~~h~--~~v~~l~~~~~~l~sgs~----dg-------~I~iwd~~~~~~~~~~~ 288 (475)
.++.|+. .+.+||..+.+-.. .+.... .....+..++.+++.|+. ++ .+.+||... ... ..+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~-~~W-~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS-SEW-VGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT-TEE-EEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC-CcE-EEC
Confidence 3444443 48899988876543 122111 122233346788888873 12 167778763 222 222
Q ss_pred c---CccCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEEEeccccce-eEEEECCCCCcEEEEecCC-
Q 011916 289 A---GHKSEVCGLKWSHDDRELASGGND-------NQLLVWNQHSQQPTLRLTEHTAAV-KAIAWSPHQSSLLASGGGT- 356 (475)
Q Consensus 289 ~---~h~~~V~~l~~s~~~~~lasg~~D-------g~I~iwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~ll~sg~Gs- 356 (475)
. ........+.+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++. .+ ..|++.||-.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~ 169 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTD 169 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET-TEEEEECCEES
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC-CEEEEEcCCCC
Confidence 1 11111222222 56777777754 358889988765332111000000 11222 23 3477776411
Q ss_pred ---CCCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecCC----CeEEEEECCCCceEE--EecCCCcce
Q 011916 357 ---ADRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYSQ----NQIMVWKYPSMAKVS--TLTGHSLRV 425 (475)
Q Consensus 357 ---~d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~~~~~--~l~~h~~~V 425 (475)
.-..+.+||+.+.+-... ......-.+++.. ++ .|++..|..+ ..+.+||..+.+-.. .+.......
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 124589999887643222 1111111122222 33 4444434332 357789987764332 121111111
Q ss_pred EEEEECCCCCEEEEEeCC--------------CCEEEEecCCCC
Q 011916 426 LYLATSPDGQTIVTGAGD--------------ETLRFWNVFPSL 455 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~D--------------g~I~iW~~~~~~ 455 (475)
..+. .++++++.|+.+ ..+.+||+....
T Consensus 248 ~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 248 SLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2222 256777777654 246677766543
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.027 Score=53.88 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=70.6
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe----CCCEEEEE--eCCCcEEEEECCCCCccEEEecC----
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW----NSRILSSG--SRDRNILQHDLRVSSDYICKLAG---- 290 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~----~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~---- 290 (475)
..+++++.||.|.-+|.++|+...+++.. ..++....- .+..++.+ +.||.|..++... +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 47899999999999999999999988754 122222211 12234444 5899999999863 322222111
Q ss_pred ccCCEEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 291 HKSEVCG---LKW-----SHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 291 h~~~V~~---l~~-----s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
...++.. ... ...+..+++|+.+|.+...|+++|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1112221 000 01355888999999999999999999988864
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.012 Score=56.38 Aligned_cols=200 Identities=8% Similarity=-0.007 Sum_probs=108.6
Q ss_pred cCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEE--cC-CCCEEEEE-eCCCeEEEEECCCCeeeEEecC-
Q 011916 176 WSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQW--TR-EGSYISVG-TNLGQVQVWDGTQCKRVRTFGG- 249 (475)
Q Consensus 176 ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~--sp-dg~~la~g-~~dg~v~iwd~~~~~~~~~~~~- 249 (475)
|.-+ .+++++.||.|+-.|..+|+..=.+......++....- .+ ++..++.. +.||.|..++..+|.....+..
T Consensus 7 ~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 7 LSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp SEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred ceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 4433 56777889999999999998766654331122222110 01 23333343 5899999999988865544431
Q ss_pred ---CCCceEE---EEe-------CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc--C-----CEEEEEEc-----CCC
Q 011916 250 ---HQTRAGV---LAW-------NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK--S-----EVCGLKWS-----HDD 304 (475)
Q Consensus 250 ---h~~~v~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~-----~V~~l~~s-----~~~ 304 (475)
...++.. ... .+..+++|+.+|.+...|++ .++.+..+.... . ...|.... ..+
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-NGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT-TCCEEEEESTTCBCC--------------------C
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC-CCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 1122221 001 46788999999999999998 555555554321 1 00111110 123
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEe-----ccccc--e-eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-ee
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLT-----EHTAA--V-KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-SV 375 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~-----~h~~~--v-~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~ 375 (475)
..++.+..+..+.+.+ ++++ +..+. ..... + .....+.++..++. . .|+.|.-+|..+|..+. ..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~-~---~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAP-F---RDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEE-E---TTTEEEEECSTTCCEEEECC
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEE-C---CCCEEEEEECCCCcEEEEee
Confidence 5677777666677666 4443 22211 00000 0 00011234565443 2 79999999999999887 55
Q ss_pred cCCCCee
Q 011916 376 DTGSQVC 382 (475)
Q Consensus 376 ~~~~~v~ 382 (475)
+..+++.
T Consensus 240 ~l~sPv~ 246 (339)
T 2be1_A 240 TFPGIIV 246 (339)
T ss_dssp CCSSCEE
T ss_pred cCCCCeE
Confidence 5555543
No 337
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.52 E-value=0.063 Score=52.49 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=78.8
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-----CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-----SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--- 413 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--- 413 (475)
.+.+|..+++. .++.||.-++......+.+... ..+..+..+|+|++|+.. .+..|.|..++.+.
T Consensus 28 ~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 28 SSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp EETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSCC
T ss_pred EEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCccccC
Confidence 34455556655 5789999898755555555433 368889999999999985 46789999988331
Q ss_pred ---------eEEEecC------CCcceEEEEECCC---CCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 414 ---------KVSTLTG------HSLRVLYLATSPD---GQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 414 ---------~~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
....+.- ...+|..+.|+|- +..|++-..|++||+||+......+
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 1122221 2467999999994 5689999999999999999754433
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.47 E-value=0.85 Score=46.12 Aligned_cols=228 Identities=9% Similarity=0.060 Sum_probs=136.6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCC---------------------------ceEEEEe-----CCCEEEEEe-C
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQT---------------------------RAGVLAW-----NSRILSSGS-R 269 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~---------------------------~v~~l~~-----~~~~l~sgs-~ 269 (475)
.|.+|+..|.|+|+-+.+++.+..+.-... --..+++ +|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 367788899999999999988876531110 0012333 356666665 4
Q ss_pred CCcEEEEECCCCCccEEEecCccCCEEEEEEc--CCCCEEEEEeC-------CCcEE------------EEECCCCceeE
Q 011916 270 DRNILQHDLRVSSDYICKLAGHKSEVCGLKWS--HDDRELASGGN-------DNQLL------------VWNQHSQQPTL 328 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--~~~~~lasg~~-------Dg~I~------------iwd~~~~~~~~ 328 (475)
+..|...+++.-......-....+.+.++.+- |+..+++.+++ ||... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 56677777763322222233456778898886 67778888764 33311 11222222222
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCC------------CeEEEEE-------------------------CCC---
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTAD------------RCIRFWN-------------------------TSN--- 368 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d------------~~I~iwd-------------------------~~~--- 368 (475)
++.- .+........+++.+.++++-.++. ..+.++| .+.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2211 2233445667888887777653321 2244444 332
Q ss_pred -C-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------------eEEEecCCCcceEEEEECCC
Q 011916 369 -G-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-------------KVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 369 -~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-------------~~~~l~~h~~~V~~l~~spd 433 (475)
+ ..+..+......-.+..+|||+++++. |-.+..+.++|+.... .+.+.+ -....+..+|.++
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC
Confidence 1 122222334455678899999999986 7788899999987421 133333 2345688999999
Q ss_pred CCEEEEEeCCCCEEEEecCC
Q 011916 434 GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~ 453 (475)
|....|.--|..|.-|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHH
T ss_pred CceEeeeeecceEEEEeccH
Confidence 95555566799999999975
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.30 E-value=0.83 Score=43.81 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=116.4
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC---CCEEEEEeC----C----CeEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE---GSYISVGTN----L----GQVQ 234 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd---g~~la~g~~----d----g~v~ 234 (475)
...++|.++ .++++..++.|++++ .+++ ..+..+ ........|+|+|+ +..|.++.. + +.|.
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 456888886 677777789999997 4454 222221 12356899999997 555555443 2 5677
Q ss_pred EEECCCC-------eee-EEec---CCCCceEEEEe--CCCEEEEEeC-------------CCcEEEEECCCCC------
Q 011916 235 VWDGTQC-------KRV-RTFG---GHQTRAGVLAW--NSRILSSGSR-------------DRNILQHDLRVSS------ 282 (475)
Q Consensus 235 iwd~~~~-------~~~-~~~~---~h~~~v~~l~~--~~~~l~sgs~-------------dg~I~iwd~~~~~------ 282 (475)
.|+.... +.+ ..+. .|. ...|+| ++.++++.+. .|.|.-++....-
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7776543 111 1122 232 345666 5665555432 1445555543110
Q ss_pred -ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCC---cEEEEECCC----------------CceeEEEeccccceeEEE
Q 011916 283 -DYICKLAGHKSEVCGLKWSH-DDRELASGGNDN---QLLVWNQHS----------------QQPTLRLTEHTAAVKAIA 341 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg---~I~iwd~~~----------------~~~~~~~~~h~~~v~~l~ 341 (475)
.......+|. ....++|++ +++++++-...+ .|.+..... ..++..+.........++
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 0111122332 346899999 666555432221 233322110 023333311234567888
Q ss_pred EC-------CCCCcEEEEecCCCCCeEEEEECCCC-cee--eeec--CCCCeeEEEEcCCCCeEEE
Q 011916 342 WS-------PHQSSLLASGGGTADRCIRFWNTSNG-HQL--NSVD--TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 342 ~s-------p~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~--~~~~--~~~~v~~l~~s~~~~~l~~ 395 (475)
|. .++. ++++.. ..+.|...++... +.. ..+- ....+..+++.|+|..+++
T Consensus 266 ~y~g~~fp~~~G~-l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 266 FVHGDMFPGLRGW-LLIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp ECCSSSCGGGTTE-EEEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred EECCCCCcccCCc-EEEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence 84 3454 555433 5778888888753 322 2222 2356889999999866555
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.20 E-value=0.24 Score=52.37 Aligned_cols=181 Identities=10% Similarity=0.166 Sum_probs=99.6
Q ss_pred CeEEEEECCCCcEEEEe-e-----CCCC-CcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeE--EecCCCC
Q 011916 188 TCVYLWTASNSKVTRLC-D-----LGPG-DSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKRVR--TFGGHQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~-~-----~~~~-~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~~~--~~~~h~~ 252 (475)
+.+++||..+++...+. . .... ..-..+.+..+++++++|+.+ ..+.+||..+.+-.. .+.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 46999999998877665 3 1111 222333333277788888754 357899988754332 2222222
Q ss_pred ceEEEEe-CCCEEEEEeCCC--cEEEEECCCCCccEEEecC------ccCCEEEEEEcCC-CCEEEEEeC--C-----Cc
Q 011916 253 RAGVLAW-NSRILSSGSRDR--NILQHDLRVSSDYICKLAG------HKSEVCGLKWSHD-DRELASGGN--D-----NQ 315 (475)
Q Consensus 253 ~v~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~-~~~lasg~~--D-----g~ 315 (475)
.-.++.+ ++.+++.|+.++ .+.+||.... .. ..+.. ......++.+..+ +..++.||. + +.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~-~W-~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEE-IF-KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTT-EE-EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCC-ce-EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 3344554 788888888655 6899998742 22 22211 1122233555554 667777765 2 45
Q ss_pred EEEEECCCCce-----eEEEec--cccce-eEEEECCCCCcEEEEecCC------CCCeEEEEECCCCce
Q 011916 316 LLVWNQHSQQP-----TLRLTE--HTAAV-KAIAWSPHQSSLLASGGGT------ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 316 I~iwd~~~~~~-----~~~~~~--h~~~v-~~l~~sp~~~~ll~sg~Gs------~d~~I~iwd~~~~~~ 371 (475)
+.+||+.+... -..+.. ..... .+++...++ .|++.||.+ ....|.+||+.+.+-
T Consensus 570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 88999987761 111111 11111 122222223 477777521 235699999987654
No 341
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.09 E-value=2.5 Score=47.33 Aligned_cols=240 Identities=10% Similarity=0.035 Sum_probs=130.6
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe-cCCCCceEEEEeC-------
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWN------- 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~l~~~------- 260 (475)
.|++.+.........+....+..|...+.+ +.++++++ ++.+.++++..++..... ..-...|.|+++.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~ 569 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG 569 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence 466667665555545543334566666654 34677775 578888887765432211 1235579999983
Q ss_pred -CCEEEEEeC-CCcEEEEECCCCCccEEEec-CccCCEEEEEEc--CCCCEEEEEeCCCcEEEEECC--CCceeEE---E
Q 011916 261 -SRILSSGSR-DRNILQHDLRVSSDYICKLA-GHKSEVCGLKWS--HDDRELASGGNDNQLLVWNQH--SQQPTLR---L 330 (475)
Q Consensus 261 -~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~lasg~~Dg~I~iwd~~--~~~~~~~---~ 330 (475)
..+++.|.. |++|+|+++.. ...+.... +......++.+. ....+|..|-.||.+..+.+. ++..... +
T Consensus 570 ~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 570 LSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp CCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred cccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 368999996 99999999973 33332211 111233344332 234578899999988666554 4443221 2
Q ss_pred eccccceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCcee-eeecCCCCeeEEEEcCC--CCeEEEEEecCCCeEEE
Q 011916 331 TEHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQL-NSVDTGSQVCNLAWSKN--VNELVSTHGYSQNQIMV 406 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~-~~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~i 406 (475)
-+ ..++.-..+...+ ..+++++ ++...+|... ++.. ..+....-.....|+.. ..-++.+ .++.++|
T Consensus 649 LG-~~pv~L~~~~~~~~~~V~a~s----~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~---~~~~LrI 719 (1158)
T 3ei3_A 649 LG-TQPTVLRTFRSLSTTNVFACS----DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA---NNSTLTI 719 (1158)
T ss_dssp CC-SSCCEEEEEESSSCEEEEEES----SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE---CSSCEEE
T ss_pred cC-CCceEEEEEeeCCceeEEEEC----CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE---cCCceEE
Confidence 22 2344433443333 3345543 4555555443 3322 22222222233445432 2334432 3556888
Q ss_pred EECCCCceE--EEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 407 WKYPSMAKV--STLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 407 wd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
..+...+.. .++. -...+..++++|+.+.++.+..
T Consensus 720 ~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 720 GTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred EEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 887654332 2232 3356889999998887666543
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.07 E-value=0.83 Score=43.66 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=88.3
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEE----eccccceeEEEECCC---CCcEEEEecCCCC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT--LRL----TEHTAAVKAIAWSPH---QSSLLASGGGTAD 358 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~--~~~----~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d 358 (475)
+...-.....|+|.|||.++++--..|.|++++...++.. ..+ .........|+++|+ +..|+++-+...+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333456789999999987777655899999987655432 111 123456789999996 4446554221245
Q ss_pred CeEEEEECCCC----------cee-eeec--CCCCeeEEEEcCCCCeEEEEEec------------CCCeEEEEECCCC-
Q 011916 359 RCIRFWNTSNG----------HQL-NSVD--TGSQVCNLAWSKNVNELVSTHGY------------SQNQIMVWKYPSM- 412 (475)
Q Consensus 359 ~~I~iwd~~~~----------~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~------------~dg~I~iwd~~~~- 412 (475)
+.|.-|....+ +.+ ..+. .......|.|.|+|..++++ |. ..|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 66666765542 111 1122 22345679999999755553 42 1345555554321
Q ss_pred -------ceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 413 -------AKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 413 -------~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
....--.+|.. ...++|+|+|.+.++=
T Consensus 186 p~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 11111224543 4679999998866653
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.00 E-value=0.43 Score=50.46 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=102.9
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCeeeEEe--------cCCCCceEEEEe--CCCEEEEEeCCC------cEEEEEC
Q 011916 219 REGSYISVGTNL----GQVQVWDGTQCKRVRTF--------GGHQTRAGVLAW--NSRILSSGSRDR------NILQHDL 278 (475)
Q Consensus 219 pdg~~la~g~~d----g~v~iwd~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~sgs~dg------~I~iwd~ 278 (475)
-++..++.|+.+ ..+.+||..+.+-...- ......-..+.. ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 45888998776543322 111223345556 777888887543 5778888
Q ss_pred CCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEe-----ccccceeEEEECCCCCcE
Q 011916 279 RVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDN--QLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 279 ~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg--~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~l 349 (475)
... ..... +...... .+++...++.+++.||.++ .+.+||..+..-...-. .......++.+..+...+
T Consensus 476 ~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 732 21111 1111111 2223324788888888654 79999998765322111 111222335555554557
Q ss_pred EEEecCCCC-----CeEEEEECCCCce-----eeee-c---CCCCeeEEEEcCCCCeEEEEEec-------CCCeEEEEE
Q 011916 350 LASGGGTAD-----RCIRFWNTSNGHQ-----LNSV-D---TGSQVCNLAWSKNVNELVSTHGY-------SQNQIMVWK 408 (475)
Q Consensus 350 l~sg~Gs~d-----~~I~iwd~~~~~~-----~~~~-~---~~~~v~~l~~s~~~~~l~~~~g~-------~dg~I~iwd 408 (475)
++.||...+ ..+.+||+.+..- ...+ . ....-..++...+++.++. .|. ....|.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV-GGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE-CCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE-CCccCCCCCCCCCeEEEEE
Confidence 777752222 5689999887761 1122 1 1111112222222444444 232 235699999
Q ss_pred CCCCceE
Q 011916 409 YPSMAKV 415 (475)
Q Consensus 409 ~~~~~~~ 415 (475)
..+.+..
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9877654
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.87 E-value=1.6 Score=43.35 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEec------cccceeEEEECCC---CCcEEEEecCC----
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT--LRLTE------HTAAVKAIAWSPH---QSSLLASGGGT---- 356 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~--~~~~~------h~~~v~~l~~sp~---~~~ll~sg~Gs---- 356 (475)
-....+|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+++.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999987776554457888887655432 22221 2355679999996 66676664310
Q ss_pred --C----CCeEEEEECCCC--c-----eee-eec--CCCCeeEEEEcCCCCeEEEEEecC--------------------
Q 011916 357 --A----DRCIRFWNTSNG--H-----QLN-SVD--TGSQVCNLAWSKNVNELVSTHGYS-------------------- 400 (475)
Q Consensus 357 --~----d~~I~iwd~~~~--~-----~~~-~~~--~~~~v~~l~~s~~~~~l~~~~g~~-------------------- 400 (475)
. ...|.-|+...+ . .+. .+. .......|+|.|+|...+++ |..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~-Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI-GDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE-CCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE-CCCCCCCcccccccccccccccc
Confidence 0 235666655332 1 111 122 22457899999999766654 532
Q ss_pred -----------CCeEEEEECCCCc-----------eEEEe-cCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCC
Q 011916 401 -----------QNQIMVWKYPSMA-----------KVSTL-TGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFP 453 (475)
Q Consensus 401 -----------dg~I~iwd~~~~~-----------~~~~l-~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~ 453 (475)
.|.|.-++.. +. ....+ .+|. ....++|.++|.++++- +.++.-.|.-+..
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred ccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 1344444432 22 11111 2443 36789999998866653 3454455555544
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.75 E-value=0.39 Score=42.58 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP------TLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~------~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --....++.|.|+|. |+++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe----CCCEEEEeC
Confidence 36779999999987777 567777777654221 112211 111258899999998 5554 379998887
Q ss_pred CCCCceee------eecC-C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------eEEEe-cCCCcceEEEEE
Q 011916 366 TSNGHQLN------SVDT-G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------KVSTL-TGHSLRVLYLAT 430 (475)
Q Consensus 366 ~~~~~~~~------~~~~-~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------~~~~l-~~h~~~V~~l~~ 430 (475)
-.+..... .+.. + ..+..|.+.|+|...++ . ++.++-...++.. ....+ ...-..-..+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav--~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV--H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 54322111 1111 1 35789999999998887 4 6776544444321 11111 233344566789
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++|.+.+.. +| +||...+.
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEESCC
T ss_pred CCCCcEEEEe--CC--eEEecCCc
Confidence 9999877766 66 66666544
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.30 E-value=0.36 Score=46.36 Aligned_cols=143 Identities=10% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEE----eccccceeEEEECCC---CCcEEEEecCC-C----
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---LRL----TEHTAAVKAIAWSPH---QSSLLASGGGT-A---- 357 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~~~----~~h~~~v~~l~~sp~---~~~ll~sg~Gs-~---- 357 (475)
.....|+|.|+|+.|+++...|.|++++.. +... ..+ .........|+++|+ +..|+++.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999834455567999999854 3211 111 112345689999996 56576663200 0
Q ss_pred CCeEEEEECCCC--c--eeee----ec----CCCCeeEEEEcCCCCeEEEEEecC------------CCeEEEEECCCC-
Q 011916 358 DRCIRFWNTSNG--H--QLNS----VD----TGSQVCNLAWSKNVNELVSTHGYS------------QNQIMVWKYPSM- 412 (475)
Q Consensus 358 d~~I~iwd~~~~--~--~~~~----~~----~~~~v~~l~~s~~~~~l~~~~g~~------------dg~I~iwd~~~~- 412 (475)
...|..|++..+ . .... +. .......|+|.|+|. |+++.|.. .|.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766533 1 1111 11 112356799999995 44443432 246777765421
Q ss_pred -------------ceEEEecCCCcceEEEEECC-CCCEEEE
Q 011916 413 -------------AKVSTLTGHSLRVLYLATSP-DGQTIVT 439 (475)
Q Consensus 413 -------------~~~~~l~~h~~~V~~l~~sp-dg~~l~s 439 (475)
..+. -.+|. ....++|.| +|.++++
T Consensus 176 p~~npf~~~~~~~~~i~-a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW-SYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEE-EECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEE-EEcCc-CccceEEECCCCCEEEE
Confidence 1111 12333 367899999 6655554
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.06 E-value=0.66 Score=52.23 Aligned_cols=194 Identities=8% Similarity=0.118 Sum_probs=117.9
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-cEEEEeeCC---CCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-KVTRLCDLG---PGDSVCSVQWTREGSYISVGT-------NLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-~~~~~~~~~---~~~~V~~v~~spdg~~la~g~-------~dg~v~iwd~~ 239 (475)
|.--.|-..+.++.-.+..|+-|++.+. ...+.++.. .+..|..-.-+++.++++..+ -.|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 4447888888888888999999999753 333444321 145677777888999877543 24889999976
Q ss_pred CCeeeEEecCCCCceEEEEeCC-----CEEEEEeC---CCcEEEEECCCC--Ccc------EEEec---CccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-----RILSSGSR---DRNILQHDLRVS--SDY------ICKLA---GHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~---dg~I~iwd~~~~--~~~------~~~~~---~h~~~V~~l~~ 300 (475)
.+ ..+.+.||.+....+..+| .+++.+.+ .+.++|.++... +.. +..+. .-.....++..
T Consensus 188 r~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred cc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 53 3345667766555555532 23333322 268888888532 111 00111 11233456777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++.-..+..-+.-|.|++||+.++.++..-+-....|...+-......+++.. ..|.|.-..+..
T Consensus 267 s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vn---r~G~vl~v~v~~ 331 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEE 331 (1630)
T ss_pred ccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEc---CCceEEEEEEcc
Confidence 77777788888889999999999988775544444444444443333344432 355544444433
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.02 E-value=0.49 Score=41.96 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=79.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCc------eeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011916 304 DRELASGGNDNQLLVWNQHSQQ------PTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~------~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
..+|++..+| +|+.=...... ...++-. .=..++.++|+|++. |+++ .++.++-.+..+.....-+.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV----~~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV----LNDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE----ETTEEEEESCCCSTTCCHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE----eCCeEEEECCCCCCcccccc
Confidence 4466777777 66554444333 1222222 124678999999888 6665 36777777765533222111
Q ss_pred CCCC--------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-------EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 377 TGSQ--------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-------VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 377 ~~~~--------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.... ...+.|.++|.+.++ .||.|+-++-++... ...-..--..+..|.+.|+|.+.+..
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav----~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV----SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cccEecccccccceEEEECCCCCEEEe----CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1111 477889999988776 469998888654221 11111222467999999999876666
Q ss_pred CCCCEE
Q 011916 442 GDETLR 447 (475)
Q Consensus 442 ~Dg~I~ 447 (475)
|+.++
T Consensus 153 -dg~ly 157 (236)
T 1tl2_A 153 -GQQFY 157 (236)
T ss_dssp -TTEEE
T ss_pred -CCcEE
Confidence 77643
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.13 E-value=1.4 Score=40.66 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=115.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
..|..|+.... ..++. . ||.|..|-......+..-......|..++-.....+.-. ||.|..|-....++.-. -.
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~ 98 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA 98 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc
Confidence 35666665432 23333 5 899999976543222111112336777777544333335 99999997654333211 11
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.-...|..++...+ ..+.-. ||.|+.|-....-.+-.-......|..|+...+.. ++. .|+.|+.|-....
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l-----~~G~v~~wG~n~~ 169 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAV-----KNGGVIAWGDNYF 169 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-----ETTEEEEEECCTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEE-----ECCEEEEecCCCC
Confidence 11346777776543 333334 89999997654221111111234566666544322 222 2688888875432
Q ss_pred ceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
-.+. .......|..++.-. ...++ - .+|.|+.|=.....++..-......|..++...+...++ . ||.|+.
T Consensus 170 gqlg~p~~~~~~v~~i~~G~--~hs~a--l-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~--~g~v~~ 241 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGI--FHSLA--L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-K--NGKVIA 241 (282)
T ss_dssp STTSCCGGGGSSEEEEEECS--SEEEE--E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-E--TTEEEE
T ss_pred CCCCCceecCCCeEEEEecC--CEEEE--E-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE-E--CCEEEE
Confidence 2111 111223455555432 23333 2 488899997654322211111223577777655443333 3 999999
Q ss_pred EecCCCCC
Q 011916 449 WNVFPSLK 456 (475)
Q Consensus 449 W~~~~~~~ 456 (475)
|--.....
T Consensus 242 wG~n~~gq 249 (282)
T 3qhy_B 242 WGSSRTAP 249 (282)
T ss_dssp ESTTCCCC
T ss_pred ecCCCCcc
Confidence 98765443
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.51 E-value=6.3 Score=36.17 Aligned_cols=238 Identities=16% Similarity=0.153 Sum_probs=122.6
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+..++-.....++.. ++.|+.|-....-...+- ......|..|+...+ ..++. . ||.|..|-......+..-..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 334555556666666 999999986543211111 011235666665432 23444 4 899999976543222111111
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...|..++......+.-. ||.|..|-....++.-. .......|..++...+. .++ -. ||.|+.|-......+-.-
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSCC
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCCc
Confidence 346788887665555556 99999997654333211 11123457777664432 233 23 689999976542211111
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
......|..|+.-.+.. ++. .|+.|+.|=....-.+. .......|..++... ...++ -. +|.|+.|=.
T Consensus 176 ~~~~~~v~~i~~G~~hs--~al----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~h~~a--l~-~g~v~~wG~ 244 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIFHS--LAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE--WYSLA--LK-NGKVIAWGS 244 (282)
T ss_dssp GGGGSSEEEEEECSSEE--EEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS--SCEEE--EE-TTEEEEEST
T ss_pred eecCCCeEEEEecCCEE--EEE----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC--CEEEE--EE-CCEEEEecC
Confidence 11234566676654432 332 27888888654322111 111223455555432 23333 22 888999876
Q ss_pred CCCceEEEecCCCcceEEEEECCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
....++.. ...|..++....
T Consensus 245 n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 245 SRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp TCCCCGGG----SSCEEEEEECSS
T ss_pred CCCccccC----CCCcEEEEECcC
Confidence 54332211 234555655444
No 351
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=90.13 E-value=14 Score=35.56 Aligned_cols=232 Identities=12% Similarity=0.114 Sum_probs=127.1
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-----------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-----------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-----------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..++-.....++...++.|+.|-.... .....+..-....+..++.+....+.++-+.||.|..|-..
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 3345545567788889999999965421 11122221223456667777777778888889999999643
Q ss_pred CC-----------eeeEEecC-CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc----------cEEEecC-ccCCEE
Q 011916 240 QC-----------KRVRTFGG-HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD----------YICKLAG-HKSEVC 296 (475)
Q Consensus 240 ~~-----------~~~~~~~~-h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~-h~~~V~ 296 (475)
.. .....+.. ....|..++-.....+.-..||.|..|-....++ ....+.. ....|.
T Consensus 135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 21 11112222 2236778887777777788899999996532111 1111111 223577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-c---------ee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 297 GLKWSHDDRELASGGNDNQLLVWNQHSQ-Q---------PT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~---------~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.++........+.-..||.|+.|-.... + .. ..+.. ....|..|+.-.... ++.+ .++.|+.|
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs-~alt----~~G~v~~w 289 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFS-VALT----KSGAVYTW 289 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEE-EEEE----TTSCEEEE
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEE-EEEe----CCCeEEEE
Confidence 7766443356666678899999965421 0 11 11111 122466666544332 3332 68999999
Q ss_pred ECCCCce-----------eeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 365 NTSNGHQ-----------LNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 365 d~~~~~~-----------~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
=....-. ...+. ....|..++.-. ...++ -..+|.|+.|=...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~a--l~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVC--CTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEE--EETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEE--ECCCCCEEEeeCCC
Confidence 6532110 11111 123455554432 23333 24788999997643
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.50 E-value=18 Score=34.63 Aligned_cols=259 Identities=8% Similarity=-0.005 Sum_probs=121.1
Q ss_pred CEEEEEcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCC----eEEEEECCCCeeeEEec----
Q 011916 180 NVLAVGLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLG----QVQVWDGTQCKRVRTFG---- 248 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg----~v~iwd~~~~~~~~~~~---- 248 (475)
.+++++..| +++++... ..............|.+|++.| +...|.+++..| .|...+ ..++.-..+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcccc
Confidence 455555544 66666543 2333321112346799999998 344455555555 444432 2222222211
Q ss_pred --C--------CCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEecC-------------------ccCCE
Q 011916 249 --G--------HQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKLAG-------------------HKSEV 295 (475)
Q Consensus 249 --~--------h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V 295 (475)
. ....|.+++++ +..|.++...+.|...+- .+.....+.. ....|
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D--gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD--HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS--TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC--CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 11257778874 567777766665554432 2222222211 12357
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEec-----c--------ccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 296 CGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTE-----H--------TAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 296 ~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h--------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+|.+.| +...|..+..++.|+..+- .++.-..+.. + ...+.+|++.|.....+..+. .+.|
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl 255 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGI 255 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeE
Confidence 8999987 3444555544444544332 2222111111 0 124789999987433333332 3445
Q ss_pred EEEECCCCceeeeecC--C----CCeeEEEEcCC-CCeEEEEEec---------CCCeEEEEECCC-CceEEEec-CCC-
Q 011916 362 RFWNTSNGHQLNSVDT--G----SQVCNLAWSKN-VNELVSTHGY---------SQNQIMVWKYPS-MAKVSTLT-GHS- 422 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~--~----~~v~~l~~s~~-~~~l~~~~g~---------~dg~I~iwd~~~-~~~~~~l~-~h~- 422 (475)
...+ ..++....+.. . ..+..+.++|. ...|++.+.. .++...+|.... ++.-..+. +-.
T Consensus 256 ~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 256 YRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp EEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred EEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 5443 23433333321 1 23567788763 3445552211 123345555443 22222221 111
Q ss_pred -c---c--eEEEEECCC-CCEEEEEeCCCCEE
Q 011916 423 -L---R--VLYLATSPD-GQTIVTGAGDETLR 447 (475)
Q Consensus 423 -~---~--V~~l~~spd-g~~l~s~s~Dg~I~ 447 (475)
. . ...++++|. ...|+.++.++.|.
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 0 1 135788874 34566666566544
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.39 E-value=27 Score=36.65 Aligned_cols=230 Identities=8% Similarity=0.062 Sum_probs=116.6
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE-ec-CCCC------ceEEEEe-CCCEEEEEe-----------CCC
Q 011916 217 WTREGSYISVGTNL-----GQVQVWDGTQCKRVRT-FG-GHQT------RAGVLAW-NSRILSSGS-----------RDR 271 (475)
Q Consensus 217 ~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~-~~-~h~~------~v~~l~~-~~~~l~sgs-----------~dg 271 (475)
++|++++++++-+. ..|+++|+++++.+.. +. .-.. ....++| +.+.++.+. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 78888888775442 3699999999987741 22 0000 1134477 444444432 224
Q ss_pred cEEEEECCCCCc-cEEEecCccCC-EEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEEeccccceeE
Q 011916 272 NILQHDLRVSSD-YICKLAGHKSE-VCGLKWSHDDR-----ELASGGND---NQLLVWNQHS--QQPTLRLTEHTAAVKA 339 (475)
Q Consensus 272 ~I~iwd~~~~~~-~~~~~~~h~~~-V~~l~~s~~~~-----~lasg~~D---g~I~iwd~~~--~~~~~~~~~h~~~v~~ 339 (475)
.|+.|.+-+... -...+.+.... -.+...+.+++ .+++.+.+ ..+++.|... ++ ...+..... ..
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~ 293 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--AT 293 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--CE
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--ce
Confidence 688887764422 22333332222 33455566666 24444322 4567777653 32 222222111 12
Q ss_pred EEECCCCCcEEEEec-------CCCCCeEEEEECCCCc-------eeee-ec--CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 340 IAWSPHQSSLLASGG-------GTADRCIRFWNTSNGH-------QLNS-VD--TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 340 l~~sp~~~~ll~sg~-------Gs~d~~I~iwd~~~~~-------~~~~-~~--~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
+..+.++..++.+.. +...+.|...|+.++. .... +. ....+..+.|..+ ..+++ ...++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~--~~~~~ 370 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA--TYDNV 370 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE--EEETT
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE--EEECC
Confidence 234445543332211 0135678888887642 1222 32 3345777888866 34444 33444
Q ss_pred --eEEEEECCCCc-eEEE-ecCC-CcceEEEEECCCCC-EEEEEeC---CCCEEEEecC
Q 011916 403 --QIMVWKYPSMA-KVST-LTGH-SLRVLYLATSPDGQ-TIVTGAG---DETLRFWNVF 452 (475)
Q Consensus 403 --~I~iwd~~~~~-~~~~-l~~h-~~~V~~l~~spdg~-~l~s~s~---Dg~I~iW~~~ 452 (475)
.|.++++.+++ .+.. +.-. .+.+.....++++. ++++.+. -+.+..+|+.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 57778776654 2222 2211 24566666667664 4444443 2456666665
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.33 E-value=27 Score=34.47 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=61.9
Q ss_pred cceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCC---ceeeeec----C------CCCeeEEEEcCC---CCeEEEEE
Q 011916 335 AAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNG---HQLNSVD----T------GSQVCNLAWSKN---VNELVSTH 397 (475)
Q Consensus 335 ~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~----~------~~~v~~l~~s~~---~~~l~~~~ 397 (475)
.....|+|.|++. .++++- ..|.|++++.... ..+..+. . ......|+|+|+ ...|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 4567999999996 466654 6899999975432 1222221 1 345788999996 34454432
Q ss_pred ec-CC----------CeEEEEECCC----------CceEEEec--CCCcceEEEEECCCCCEEEEEeCC
Q 011916 398 GY-SQ----------NQIMVWKYPS----------MAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 398 g~-~d----------g~I~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.. .+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 22 11 2455566532 12333332 112235789999999877776553
No 355
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=83.98 E-value=0.36 Score=26.12 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.1
Q ss_pred CCcccCCCCCc
Q 011916 48 SDRFIPCRSSS 58 (475)
Q Consensus 48 ~drfip~r~~~ 58 (475)
-++|||+|-+.
T Consensus 5 ~eKFiPsRPAP 15 (26)
T 2rqw_B 5 NGKFIPSRPAP 15 (26)
T ss_dssp CCSSCCSSCCC
T ss_pred ccccccCCCCC
Confidence 48999999864
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.60 E-value=27 Score=38.05 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=46.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc-----ccceeEEEECCCC-CcEEEEecCCCCCeEEEEEC
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH-----TAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+.++...++..++++-+.|+++++|++.+++++.+..-. ..........|.. ..+.+.-....++..++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 4677788888889999999999999999999988765321 1111122223322 32333322335677777765
No 357
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=83.04 E-value=29 Score=32.09 Aligned_cols=229 Identities=9% Similarity=0.031 Sum_probs=119.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeE---------EecCCCCceEEEEe-CCCEEEEEeCCCcEEEEEC---CCCC---
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCKRVR---------TFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDL---RVSS--- 282 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~~~~---------~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~---~~~~--- 282 (475)
|+..++++.+.+|.|+--.+...+..+ .++.+..-+..+.- ..+.|+..+..|.++-... ...+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 345678888888988776655432211 11222222222222 3467777777887655543 2211
Q ss_pred --ccEE---EecCccCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCC-------CceeEEEeccccceeEEEECCCCC
Q 011916 283 --DYIC---KLAGHKSEVCGLKWS---HDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 283 --~~~~---~~~~h~~~V~~l~~s---~~~~~lasg~~Dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
..+. .+. ....|.++..- .++.+++..+..|.++...+.. +.....+..+ +.+..+.......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 1110 122 23456655432 3556888999999999987642 1122223334 4444444433333
Q ss_pred cEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011916 348 SLLASGGGTADRCIRFWNTSN---------GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------ 412 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 412 (475)
.+++.. .+|.+..++... |.....+..+..|..+....++..+++ .+..|.++-.++...
T Consensus 159 ~i~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~--~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 159 EVMLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT--ATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp EEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEE--EETTSEEEEECGGGSCCCCTT
T ss_pred EEEEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEE--EEcCCceEEEEHHHhccCCCC
Confidence 354433 678877777532 222223345566777765555566666 557888887766221
Q ss_pred ---ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 413 ---AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 413 ---~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.....+....+.+..+....+...|+..+.+|.+.-..+..-
T Consensus 234 ~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 234 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 111222223355555544344455667778888777777654
No 358
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=80.45 E-value=43 Score=32.30 Aligned_cols=261 Identities=11% Similarity=0.013 Sum_probs=132.0
Q ss_pred CCEEEEEcCCeEEEEECCC-C---------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-----
Q 011916 179 QNVLAVGLGTCVYLWTASN-S---------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR----- 243 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~-~---------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~----- 243 (475)
...++...++.|+.|-... + ....-..+..-..|..|+. .+.+.++-..||.|..|-....-.
T Consensus 34 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~ 111 (423)
T 3mvd_K 34 ELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDT 111 (423)
T ss_dssp CCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCC
T ss_pred ccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCC
Confidence 3344445677777774322 0 1111111222345655544 456777778899999996532111
Q ss_pred -------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEEC--CCCCcc---------EEEecCccCCEEEEEEcCCCC
Q 011916 244 -------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL--RVSSDY---------ICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 244 -------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~--~~~~~~---------~~~~~~h~~~V~~l~~s~~~~ 305 (475)
....-.....|..++......+.-..||.|..|-. ...++. ..........|..|+.. ..
T Consensus 112 ~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~ 189 (423)
T 3mvd_K 112 SEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--AD 189 (423)
T ss_dssp CSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SS
T ss_pred cCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CC
Confidence 00111123467777777677777789999999975 222211 11111223456666653 33
Q ss_pred EEEEEeCCCcEEEEECCCC-----------------------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 306 ELASGGNDNQLLVWNQHSQ-----------------------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
+.+.-..||.|+.|=.... .+..........|..|+..... .++.- +.++.|+
T Consensus 190 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~--~~~~~--~~~g~v~ 265 (423)
T 3mvd_K 190 HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYC--TFMRE--SQTQVIW 265 (423)
T ss_dssp EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTE--EEEEE--TTTCCEE
T ss_pred eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcE--EEEEE--CCCCeEE
Confidence 5555677899999964321 1111111122345555544322 22221 2688888
Q ss_pred EEECCCCce-----------eeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------------ceEEEe
Q 011916 363 FWNTSNGHQ-----------LNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------------AKVSTL 418 (475)
Q Consensus 363 iwd~~~~~~-----------~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------------~~~~~l 418 (475)
.|-....-. ..-.. ....|..++.-. ...++ -..+|.|+.|=.... .....+
T Consensus 266 ~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v 341 (423)
T 3mvd_K 266 ATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVI--LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV 341 (423)
T ss_dssp EEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEE--EETTCCEEEEECCGGGTTCSSSCCSCEEEEEEC
T ss_pred EEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEE--EeCCCcEEEEECCCCCCCCCCCccccccCceEe
Confidence 886432110 00000 123455444332 22233 236888999864321 112223
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..-...|..++.... ..+....||.|+.|-...
T Consensus 342 ~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 342 KKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred ccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 333336777776543 344447899999997654
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.43 E-value=51 Score=32.52 Aligned_cols=239 Identities=11% Similarity=0.093 Sum_probs=120.1
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe---eeEEec---------CCCCceEEEEeCCC-----EEEEE-eC-
Q 011916 210 DSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCK---RVRTFG---------GHQTRAGVLAWNSR-----ILSSG-SR- 269 (475)
Q Consensus 210 ~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~---~~~~~~---------~h~~~v~~l~~~~~-----~l~sg-s~- 269 (475)
.....|+|.|+|. .|+++...|.|++++..... .+..+. ........|++++. .|.+. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 56667788999999754321 222221 11356788999753 33332 21
Q ss_pred -C----------CcEEEEECCCC---------CccEEEec--CccCCEEEEEEcCCCCEEEEEeCCC-------------
Q 011916 270 -D----------RNILQHDLRVS---------SDYICKLA--GHKSEVCGLKWSHDDRELASGGNDN------------- 314 (475)
Q Consensus 270 -d----------g~I~iwd~~~~---------~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg------------- 314 (475)
+ ..|.-|.+... .+.+..+. ........|.|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444555321 11222221 2223468899999998777765432
Q ss_pred ----cEEEEECCCC---------------------ceeEEEeccccceeEEEECCC-----CC-cEEEEec-CCCCCeEE
Q 011916 315 ----QLLVWNQHSQ---------------------QPTLRLTEHTAAVKAIAWSPH-----QS-SLLASGG-GTADRCIR 362 (475)
Q Consensus 315 ----~I~iwd~~~~---------------------~~~~~~~~h~~~v~~l~~sp~-----~~-~ll~sg~-Gs~d~~I~ 362 (475)
.|.-.|.... ..+.. .+|.. ...++|.|. |. +++++-. |.....-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333343331 01111 23433 357899987 33 2333210 10001122
Q ss_pred EEECCCC------ceeeeecCC--CCeeEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCc---eEEEe-c----
Q 011916 363 FWNTSNG------HQLNSVDTG--SQVCNLAWSKN-------VNELVSTHGYSQNQIMVWKYPSMA---KVSTL-T---- 419 (475)
Q Consensus 363 iwd~~~~------~~~~~~~~~--~~v~~l~~s~~-------~~~l~~~~g~~dg~I~iwd~~~~~---~~~~l-~---- 419 (475)
|..+..+ .++..+.+. ..+..+.|... +.+|+. .. .+.|....+.... ....+ .
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~--~~-~g~i~~~~~~~~~~~~~~~~~~~g~~~ 328 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG--DR-NGNFLTLQQSPVTKQWQEKPLCLGTSG 328 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE--ET-TSCEEEEEC-----CCEEEEECEEETT
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe--cC-CCcEEEEEeCCCCceeeEEEeecCCcc
Confidence 3333322 234444433 46777887543 334554 33 3666666654321 11122 1
Q ss_pred ----CCCcceEEEEECCCCCEEEEEeCC-----CCEEEEecCC
Q 011916 420 ----GHSLRVLYLATSPDGQTIVTGAGD-----ETLRFWNVFP 453 (475)
Q Consensus 420 ----~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iW~~~~ 453 (475)
....++..+.+.|||.++++.... ..=+||.|..
T Consensus 329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 329 SCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp SSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred cccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 124679999999999988876521 2236788763
No 360
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=79.39 E-value=46 Score=31.99 Aligned_cols=268 Identities=11% Similarity=0.096 Sum_probs=139.7
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-c----------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-K----------VTRLCDLGPGDSVCSVQWTREGSYISVGTNL-GQVQVWDG 238 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-~----------~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g~v~iwd~ 238 (475)
+..++-.....++...++.|+.|-.... + ....+..-....|..|+.- +.+.++-..+ |.|+.|-.
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEEEcC
Confidence 4456666677888899999999975431 1 1111111123456666653 3344444444 59999964
Q ss_pred CCCe-----------eeEEec-CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc----------EEEecCc-cCCE
Q 011916 239 TQCK-----------RVRTFG-GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY----------ICKLAGH-KSEV 295 (475)
Q Consensus 239 ~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~~h-~~~V 295 (475)
.... ....+. .....|..++......+.-..||.|..|-....++. ...+... ...|
T Consensus 96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 175 (406)
T 4d9s_A 96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175 (406)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Confidence 3210 111111 123468888887777777789999999975432221 1112211 2256
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------ee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQ----------PT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~----------~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..++.. ..+.+.-..||.|+.|-..... .. ..+.. ....|..|+...... ++.+ .++.|+.
T Consensus 176 ~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht-~~l~----~~G~v~~ 248 (406)
T 4d9s_A 176 KMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT-ISVS----YSGALYT 248 (406)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEE-EEEE----TTCCEEE
T ss_pred EEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcE-EEEc----CCCCEEE
Confidence 666653 3355556788999999644211 01 11111 123456665543322 3332 6888998
Q ss_pred EECCCCcee-----------eeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------eEEEec
Q 011916 364 WNTSNGHQL-----------NSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-----------KVSTLT 419 (475)
Q Consensus 364 wd~~~~~~~-----------~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-----------~~~~l~ 419 (475)
|-....-.+ ..+. ....|..++.- ....++ -..+|.|+.|=....- ....+.
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMA--LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEE--EETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEE--EcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 864332111 1111 12235544433 223333 2378889998643211 011111
Q ss_pred -CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 420 -GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 420 -~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.....|..++... ...+....||.|+.|--..
T Consensus 325 ~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 325 FPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CGGGCCEEEEEECS--SEEEEEETTSCEEEEECCT
T ss_pred ccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCCC
Confidence 1223566666643 3445556889999997643
No 361
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=73.58 E-value=64 Score=30.71 Aligned_cols=263 Identities=11% Similarity=0.083 Sum_probs=124.2
Q ss_pred CCCEEEEEcCCeEEEEECCC-C-------cEEEEee-C--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 011916 178 SQNVLAVGLGTCVYLWTASN-S-------KVTRLCD-L--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----- 241 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~-~-------~~~~~~~-~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----- 241 (475)
...+++...++.|+.|=... + ....... + -....|..|+ ....+.++-..||.|..|-....
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI--GGEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEE--EETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEE--eCCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 34677778899999996543 1 1111110 0 0112344443 23456666778899999964321
Q ss_pred ------eeeEEecC-CCCceE--EEEeCCCEEEEEeCCCcEEEEECCCCCc----------cEEEecCc-cCCEEEEEEc
Q 011916 242 ------KRVRTFGG-HQTRAG--VLAWNSRILSSGSRDRNILQHDLRVSSD----------YICKLAGH-KSEVCGLKWS 301 (475)
Q Consensus 242 ------~~~~~~~~-h~~~v~--~l~~~~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~h-~~~V~~l~~s 301 (475)
.....+.. ....+. .++-.....+.-..||.|..|-....++ ....+... ...|..|+..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 11111221 122333 3333456677778899999996532111 11122211 2256666653
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c-------e--e-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQ-Q-------P--T-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~-~-------~--~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
....+.-..||.|+.|=.... + . . ..+.. ....|..++......+.++.. .|+.|+.|-....
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---~~G~v~~wG~n~~ 242 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---DDDTVWSWGDGDY 242 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---TTTEEEEEECCGG
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---cCCEEEEEeCCCC
Confidence 345556677899999975421 0 0 0 11111 223566676654223333332 6899999964321
Q ss_pred -c----------eeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------eEEEecC-CCcc
Q 011916 370 -H----------QLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-----------KVSTLTG-HSLR 424 (475)
Q Consensus 370 -~----------~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-----------~~~~l~~-h~~~ 424 (475)
+ ....+. ....|..++.-.. ..++ -..+|.|+.|=..... ....+.. ....
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~ 318 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVA--LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEE--EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCC
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEE--EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCC
Confidence 1 011111 1223555544332 2233 2378899999653211 1112221 1234
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 425 VLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
|..++... ...+....||.|+.|-...
T Consensus 319 v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 319 VIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred EEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 66676643 3445567899999998754
No 362
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=68.94 E-value=84 Score=30.17 Aligned_cols=227 Identities=7% Similarity=-0.002 Sum_probs=120.1
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-c------------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-K------------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-~------------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
+..|+-.....++...+|.|+.|-.... + ....+ .....|..|+. ...+.++-+.||.|..|-
T Consensus 77 v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v--~~~~~i~~va~--G~~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI--DLPGKALCISA--GDSHSACLLEDGRVFAWG 152 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC--CCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred ceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE--cCCCCEEEEEc--CcCeEEEEeCCCeEEEEe
Confidence 4556666678889999999999975431 1 11111 12345666554 334566667889999997
Q ss_pred C--CC-Cee---------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc----------------------
Q 011916 238 G--TQ-CKR---------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD---------------------- 283 (475)
Q Consensus 238 ~--~~-~~~---------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~---------------------- 283 (475)
. .. +++ ..........|..++......+.-..+|.|..|-....++
T Consensus 153 ~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 232 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232 (423)
T ss_dssp CEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSS
T ss_pred CCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccC
Confidence 5 22 221 1111123346778887777777788999999996432211
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEEeccccceeEEEECCCCCcEEEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-----------PTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-----------~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+..........|..++... ...++.-..|+.|+.|-..... ...........|..|+.-.... ++.+
T Consensus 233 p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht-~alt 310 (423)
T 3mvd_K 233 PTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHT-VILT 310 (423)
T ss_dssp CEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEE-EEEE
T ss_pred CeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeE-EEEe
Confidence 1111111223455555432 2233333578888888643210 0111111134566666544332 3332
Q ss_pred ecCCCCCeEEEEECCCC---------c---eeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 353 GGGTADRCIRFWNTSNG---------H---QLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~---------~---~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.|+.|+.|=.... . ....+. ....|..++.-.. ..++ -..+|.|+.|=...
T Consensus 311 ----~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~a--lt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 311 ----TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYA--VTIDGKLYSWGSGV 374 (423)
T ss_dssp ----TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEE--EETTSCEEEEECCT
T ss_pred ----CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEE--EcCCCCEEEECCCC
Confidence 6899999964321 0 111111 1225666655433 2222 23789999996543
No 363
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=68.75 E-value=1e+02 Score=31.12 Aligned_cols=246 Identities=13% Similarity=0.137 Sum_probs=134.1
Q ss_pred EEEEECCCCcEEEEeeCCC-CCc---------------EEEEEEcC-CCCEEEEEe---CCCeEEEEECCCCeeeEEe--
Q 011916 190 VYLWTASNSKVTRLCDLGP-GDS---------------VCSVQWTR-EGSYISVGT---NLGQVQVWDGTQCKRVRTF-- 247 (475)
Q Consensus 190 V~lw~~~~~~~~~~~~~~~-~~~---------------V~~v~~sp-dg~~la~g~---~dg~v~iwd~~~~~~~~~~-- 247 (475)
|.+++-.+|+......... .+. ..++++-. +...++++- ....|..||...+++...+
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 7889988888877766521 221 23444321 223344433 1235788888777664433
Q ss_pred c-------------CCCCceEEEEeCC-CEEEEEe----CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC--CCEE
Q 011916 248 G-------------GHQTRAGVLAWNS-RILSSGS----RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD--DREL 307 (475)
Q Consensus 248 ~-------------~h~~~v~~l~~~~-~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l 307 (475)
. .|.-.|..+..+| .-|+.|+ .||++ +|... .+|...+.--.|.|+ |..+
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~---------~gHGDa~hv~dldP~r~GlEv 380 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG---------LGHGDALHTGDLDPGRPGLEV 380 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS---------CCCCSCEEEECCCTTSSSCEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC---------CCCCCeeEEeecCCCCCCcEE
Confidence 2 1455555555555 3444443 34443 44432 378888888888886 4577
Q ss_pred EEEeCCC----cEEEEECCCCceeEEEecc--ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCe
Q 011916 308 ASGGNDN----QLLVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV 381 (475)
Q Consensus 308 asg~~Dg----~I~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v 381 (475)
+.+.+++ -..+.|..+++.+...... .+......|.|+...+=+-+ +. .+|+. +|+.+........-
T Consensus 381 ~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~----~~--~l~~~-~G~~i~~~~p~~~N 453 (591)
T 2zux_A 381 FQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA----NG--SLYSA-KGVKIGSGVPSSTN 453 (591)
T ss_dssp EEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE----TT--EEECT-TSCBCSSCCCSCCS
T ss_pred EEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe----cC--ceECC-CCCEecCCCCCCcc
Confidence 7776652 3556899999998877542 34444455666644322221 11 35664 34444432122223
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEEecC-------CCcceEEEEECCCC-CEEEEEeCC-CCEEEEe
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--KVSTLTG-------HSLRVLYLATSPDG-QTIVTGAGD-ETLRFWN 450 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~l~~-------h~~~V~~l~~spdg-~~l~s~s~D-g~I~iW~ 450 (475)
..+-|.-+...-+. ..+.|.-|+...++ .+.++.+ ...+.....+--|. +-|+..+.| ..|+||.
T Consensus 454 ~~i~WdGDl~rell----d~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYt 529 (591)
T 2zux_A 454 FGIWWDGDLLREQL----DSNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYT 529 (591)
T ss_dssp EEECCSSSSSCEEE----ETTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEEC
T ss_pred eeEEECCCCcHhhh----CCceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEe
Confidence 34667777644444 23578889987765 4444443 11223333333332 245544455 4699998
Q ss_pred cCCCCC
Q 011916 451 VFPSLK 456 (475)
Q Consensus 451 ~~~~~~ 456 (475)
......
T Consensus 530 t~~pt~ 535 (591)
T 2zux_A 530 TTIPTE 535 (591)
T ss_dssp CCCCCS
T ss_pred CCCCCc
Confidence 754443
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.89 E-value=79 Score=29.46 Aligned_cols=187 Identities=9% Similarity=0.005 Sum_probs=103.8
Q ss_pred CCCEEEEEeCCCcEEEEE---CCCC-----CccEE---EecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCC-
Q 011916 260 NSRILSSGSRDRNILQHD---LRVS-----SDYIC---KLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQ- 324 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd---~~~~-----~~~~~---~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~- 324 (475)
..+.|+.-+..|.++-.. +... +..+. .+. ....|.++..-. +..+++..+.+|.|+.-.+...
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~ 130 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD 130 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhh
Confidence 345666666677665443 3311 11111 111 234455554333 5779999999999999886532
Q ss_pred ------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--C---------CceeeeecCCCCeeEEEEc
Q 011916 325 ------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--N---------GHQLNSVDTGSQVCNLAWS 387 (475)
Q Consensus 325 ------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~---------~~~~~~~~~~~~v~~l~~s 387 (475)
.....+... +.+..+........+++.. ..|.+..+... . |.....+..+..|..+...
T Consensus 131 ~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T---~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~ 206 (327)
T 3uc1_A 131 SNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVS---ANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVV 206 (327)
T ss_dssp CCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEE---TTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEEC
T ss_pred ccccCceEEEEECCC-CEEEEEEEecCCCEEEEEE---CCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEE
Confidence 122233333 3444444443444455543 68888888766 2 2222233456678877777
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCC-------ceEEEec--CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSM-------AKVSTLT--GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~-------~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+.+.+++. .+..|.++.-.+... .-+..+. .-.+.+..+....+...++..+.+|.+.-+++..
T Consensus 207 ~~~~~ll~--~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 207 REGTYLLV--ATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CTTCEEEE--EETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCCCEEEE--EeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 66677777 557888888775322 1122222 2134455554444455677777888887777654
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.53 E-value=75 Score=28.73 Aligned_cols=152 Identities=12% Similarity=0.089 Sum_probs=93.0
Q ss_pred CCCCceeEEecC-CCCEEEEEcCCeEEEEEC---CCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC
Q 011916 166 QDDFYLNLVDWS-SQNVLAVGLGTCVYLWTA---SNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 166 ~~d~~v~~l~ws-~~~~la~~~~~~V~lw~~---~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~ 239 (475)
..|.....+.-+ .+.++..+..|.+|--.+ ....... + +..++.|..+.- . +..+++..+.+|.++-..+.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH
Confidence 455555554444 358999999998876543 2222111 3 556777887754 4 56799999999999998865
Q ss_pred CCe------eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCC---C-----CccEEEecCccCCEEEEEEcCC
Q 011916 240 QCK------RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRV---S-----SDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 240 ~~~------~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~---~-----~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
... ....+... ..+..+.. ..+.++..+..|.+..+.... . +.....+. ....|.++....+
T Consensus 99 ~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~ 176 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG 176 (276)
T ss_dssp GTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred HhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence 432 12223222 33333333 346788888999988876531 1 11111122 2355666665566
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 011916 304 DRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~ 322 (475)
+..++..+..|.++...+.
T Consensus 177 ~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp CSEEEEEETTSCEEEEEGG
T ss_pred CCEEEEEeCCCcEEEeEHH
Confidence 6788888999999888764
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=66.29 E-value=82 Score=29.06 Aligned_cols=228 Identities=11% Similarity=0.053 Sum_probs=119.6
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCee-------eE--EecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECC---CCC--
Q 011916 218 TREGSYISVGTNLGQVQVWDGTQCKR-------VR--TFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLR---VSS-- 282 (475)
Q Consensus 218 spdg~~la~g~~dg~v~iwd~~~~~~-------~~--~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~---~~~-- 282 (475)
-++..++++.+.+|.|+--.+...+. +. .+.....-+..+.. ..+.++..+..|.++-.... ..+
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 35667888899999998776543221 11 12222222222222 35678888888887766543 110
Q ss_pred ---cc---EEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CceeEEEeccccceeEEEECCCC
Q 011916 283 ---DY---ICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 283 ---~~---~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
.. ...+. ....|.++...+ ++.+|+..+..|.++...+.. +.....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 00 00122 123455553332 466888889999999888743 222223333 3445555444333
Q ss_pred CcEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----
Q 011916 347 SSLLASGGGTADRCIRFWNTSN---------GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----- 412 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----- 412 (475)
..++... .+|.+..+.... |.....+..+..|..+....++..+++ .+..|.....++...
T Consensus 163 ~~i~l~T---~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~--vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 163 EKVICLS---KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLI--VSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp CEEEEEE---TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEE--EETTSEEEEEEGGGSCBCCT
T ss_pred CEEEEEe---CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEE--EECCCceEEEEHHHhcccCC
Confidence 4444433 688888887643 222223344566777766666666666 457888888876432
Q ss_pred --ceEEEe--c-CCCcceEEE-EECCCCCEEEEEeCCCCEEEEecCC
Q 011916 413 --AKVSTL--T-GHSLRVLYL-ATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 413 --~~~~~l--~-~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+-+..+ . .....+..+ .+. +...++..+..|.+.-..+..
T Consensus 238 ~~kGv~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 238 GATGYTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TCCCEECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEGGG
T ss_pred CCCCEEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEccc
Confidence 112212 2 223445443 444 444555566677554445443
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.97 E-value=42 Score=36.60 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
..+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888888999999999999999999999988754
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=64.48 E-value=89 Score=28.82 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc------cEE--EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---C----
Q 011916 260 NSRILSSGSRDRNILQHDLRVSSD------YIC--KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---Q---- 324 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd~~~~~~------~~~--~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---~---- 324 (475)
+..++++.+.+|.|+--.+..-.. -.. .+. ....+..+........++..+..|.++-..... .
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 346788889999998876642110 111 112 223455554445556777778888877665431 1
Q ss_pred --ce---eEEEeccccceeEEEECC---CCCcEEEEecCCCCCeEEEEECCC-------CceeeeecCCCCeeEEEEcCC
Q 011916 325 --QP---TLRLTEHTAAVKAIAWSP---HQSSLLASGGGTADRCIRFWNTSN-------GHQLNSVDTGSQVCNLAWSKN 389 (475)
Q Consensus 325 --~~---~~~~~~h~~~v~~l~~sp---~~~~ll~sg~Gs~d~~I~iwd~~~-------~~~~~~~~~~~~v~~l~~s~~ 389 (475)
.+ ...+.. ...|.++...+ +..+++... ..|.++...+.. |.....+..+..+..+.....
T Consensus 86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T---~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTT---ASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEE---TTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEe---CCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 11 111222 23344443322 234454432 789988887642 333333445667777766665
Q ss_pred CCeEEEEEecCCCeEEEEECCC---------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPS---------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
...++. .+.+|.+..+.... +.....+.. ...|..+..-.++..|++.+..|.++...+..-
T Consensus 162 ~~~i~l--~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVIC--LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEE--EETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCEEEE--EeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 666766 56889988887643 122222332 455667766666677888999999999988654
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.91 E-value=85 Score=28.39 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=89.9
Q ss_pred cCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 292 KSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQ------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 292 ~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...|..+.... +...++..+.+|.++...+.... ....+.. .+.+..+........+++.. ..|.+..+
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T---~~G~~~r~ 142 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFT---KKGRVARF 142 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEE---TTSEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEE---CCCEEEEE
Confidence 34455543321 46789999999999998875432 1122332 34455555554444455543 68888877
Q ss_pred ECCC---------CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEecCCCcceEEE
Q 011916 365 NTSN---------GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 365 d~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l 428 (475)
+... |.....+..+..|..+...+++..++. .+..|.++...+.. ++-+..+ ...+.+..+
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~--~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~ 219 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV--ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDL 219 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE--EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEE
T ss_pred EhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE--EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEE
Confidence 6532 222223445567777766666667777 55788888877532 2223333 233455555
Q ss_pred EECCCCCEEEEEeCCCCEEE--EecCCC
Q 011916 429 ATSPDGQTIVTGAGDETLRF--WNVFPS 454 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~i--W~~~~~ 454 (475)
....+...++..+.+|.+.. +++..-
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 44334456777788888887 876543
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=62.81 E-value=1e+02 Score=29.04 Aligned_cols=254 Identities=8% Similarity=0.004 Sum_probs=120.1
Q ss_pred CceeEEecCC---CCEEEEEcCC----eEEEEECCCCcEEEEee---CC---------CCCcEEEEEEcC-C-CCEEEEE
Q 011916 169 FYLNLVDWSS---QNVLAVGLGT----CVYLWTASNSKVTRLCD---LG---------PGDSVCSVQWTR-E-GSYISVG 227 (475)
Q Consensus 169 ~~v~~l~ws~---~~~la~~~~~----~V~lw~~~~~~~~~~~~---~~---------~~~~V~~v~~sp-d-g~~la~g 227 (475)
..+.+|...+ +.+++++..+ .|+..+-.......... +. ....|.++++.| + ...|.++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 4577788775 4677777665 56554322222222211 11 113588899987 2 4566676
Q ss_pred eCCCeEEEEECCCCeeeEEec---C----------------CCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 228 TNLGQVQVWDGTQCKRVRTFG---G----------------HQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~---~----------------h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
+..+.|...+ ..++.-..+. . ....+.+|.++ +..|..+..++.|...+- .+...
T Consensus 135 ~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D--gG~tW 211 (394)
T 3b7f_A 135 TSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD--AGTDW 211 (394)
T ss_dssp EETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS--TTSSC
T ss_pred ecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC--CCCCc
Confidence 6666665553 2222222221 1 12357788885 355666654554443322 23222
Q ss_pred EEecC-----c--------cCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEec-c-c---cceeEEEECCCC
Q 011916 286 CKLAG-----H--------KSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLTE-H-T---AAVKAIAWSPHQ 346 (475)
Q Consensus 286 ~~~~~-----h--------~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h-~---~~v~~l~~sp~~ 346 (475)
..+.. + ...+.+|.+.++ ...|..+...+ |+..+-. ++.-..+.. . . ..+..+++.|..
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 22211 0 134889999985 45666666544 5544422 221111111 1 1 235678888743
Q ss_pred -CcEEEEec-CC-------CCCeEEEEECCC-CceeeeecC--CC-------CeeEEEEcCCC-CeEEEEEecCCCeEEE
Q 011916 347 -SSLLASGG-GT-------ADRCIRFWNTSN-GHQLNSVDT--GS-------QVCNLAWSKNV-NELVSTHGYSQNQIMV 406 (475)
Q Consensus 347 -~~ll~sg~-Gs-------~d~~I~iwd~~~-~~~~~~~~~--~~-------~v~~l~~s~~~-~~l~~~~g~~dg~I~i 406 (475)
..+++... +. .++...+|.... |+....+.. .. -...++++|.. ..|++ +..++.|..
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~--g~~~g~l~~ 367 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYF--GTTGGEIWA 367 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEE--ECTTSCEEE
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEE--EeCCCeEEE
Confidence 33444321 00 123344555443 343333321 11 11357888753 45665 544555543
Q ss_pred EECCCCceEEEecCCCcceEEEEE
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
-+ ..++.-..+..+-..+.++.|
T Consensus 368 S~-D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 368 SA-DEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp ES-STTSBCEEEECSCSCEEEEEE
T ss_pred EC-CCCCCceEcccCCCCeeEEEE
Confidence 32 223333333334445666665
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.11 E-value=35 Score=38.07 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44555666788899999999999999999999988754
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.98 E-value=28 Score=35.33 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=42.5
Q ss_pred eeEEecCCC-CEEEEEcC-------------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC
Q 011916 171 LNLVDWSSQ-NVLAVGLG-------------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN 229 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~-------------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~ 229 (475)
.+.|.+.++ +|..+... +.|+.++..++++..++.......++.++|+||++.|+++-.
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 455777776 45443432 268888888899888776334568999999999998887643
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.42 E-value=37 Score=34.72 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCeeEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEE
Q 011916 379 SQVCNLAWSKNVNELVSTHGY----------SQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~----------~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~ 440 (475)
...-.|+|++.|+.+++.-+. .++.+.+.+..+++....+.++ ...++.++|+||++.|+..
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 356789999999977764221 1245667777777776666654 4679999999999988775
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.91 E-value=63 Score=35.97 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT 331 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~ 331 (475)
+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4445566778899999999999999999999887654
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.76 E-value=42 Score=34.05 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCeeEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEE
Q 011916 379 SQVCNLAWSKNVNELVSTHGY----------SQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~----------~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~ 440 (475)
.....|.|.++|...+++-+. ..+.|..++..+++....+.+. ...++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 456789999999888853221 1236777777777766666543 4579999999999988876
No 376
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=59.37 E-value=1.4e+02 Score=29.28 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=102.6
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCc-E---------------------------------EEEee---CC---C
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSK-V---------------------------------TRLCD---LG---P 208 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-~---------------------------------~~~~~---~~---~ 208 (475)
..+..++-.....++...+|.|+.|-....- + ...+. +. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 3566677777788899999999999654311 0 00110 10 1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCee------------eEEecC-CCCceEEEEeCCCEEEEEeCCCc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGT---QCKR------------VRTFGG-HQTRAGVLAWNSRILSSGSRDRN 272 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~---~~~~------------~~~~~~-h~~~v~~l~~~~~~l~sgs~dg~ 272 (475)
...|..|+.. ..+.++-+.+|.|+.|-.. .+++ ...+.. ....|..++......+.-..+|.
T Consensus 147 ~~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~ 224 (473)
T 3of7_A 147 GHKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM 224 (473)
T ss_dssp TCCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC
T ss_pred CCcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe
Confidence 2456665543 4455666778999999741 1111 111111 12358888887777777889999
Q ss_pred EEEEECCCCCcc--------------EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------ce
Q 011916 273 ILQHDLRVSSDY--------------ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ------------QP 326 (475)
Q Consensus 273 I~iwd~~~~~~~--------------~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~------------~~ 326 (475)
|..|-....++. ...+ ....|..|+.. ....+.-..+|.|+.|-.... ..
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred EEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999965432211 0111 11356666653 335555567889999964321 01
Q ss_pred eE---EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 327 TL---RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 327 ~~---~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.. .+.. ....|..|+.-.... ++.+ .+|.|+.|=.
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs-~~lt----~~G~v~~wG~ 339 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHS-LILS----QDGDLYSCGR 339 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEE-EEEE----TTSCEEEEEE
T ss_pred eeccccccccCCccEEEEEeCCCeE-EEEe----CCCeEEEEEC
Confidence 11 1111 123466666644332 3332 6888888864
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=57.90 E-value=1.3e+02 Score=28.65 Aligned_cols=181 Identities=11% Similarity=0.069 Sum_probs=97.4
Q ss_pred eEEEEECCCC--eeeEEecCC------CCceEEEEeC---------CCEEEEE-eCCCcEEEEECCCCCccEEEecCccC
Q 011916 232 QVQVWDGTQC--KRVRTFGGH------QTRAGVLAWN---------SRILSSG-SRDRNILQHDLRVSSDYICKLAGHKS 293 (475)
Q Consensus 232 ~v~iwd~~~~--~~~~~~~~h------~~~v~~l~~~---------~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~h~~ 293 (475)
.|.+||+.+. +.++.+.-. ...+..+.++ +.++... .....|.|+|+. .++..+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-~~~swRv~--~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-KQDSWNVT--HPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-TTEEEEEE--CGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-CCcEEEEc--cCC
Confidence 5778888888 887776522 3356667665 2333333 346789999998 44444433 221
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCC----CCcEEEEecCCCCCeEEEEE---C
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH----QSSLLASGGGTADRCIRFWN---T 366 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd---~ 366 (475)
|.|+.....+. +|.-. .+ ...+..|+.+|+ ++.|+...- ....++--. +
T Consensus 201 ------~~pd~~~~~~i--~G~~~-----------~~---~~Gi~gIaLsp~~~~~~~~LYf~pl--ss~~ly~V~T~~L 256 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEY-----------EF---KAGIFGITLGDRDSEGNRPAYYLAG--SAIKVYSVNTKEL 256 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEE-----------EE---CCCEEEEEECCCCTTSCCEEEEEES--SCSEEEEEEHHHH
T ss_pred ------CccccCcceEE--CCEEe-----------Ee---ccCceEEEecCCcCCCCeEEEEEEC--CCCcEEEEEHHHh
Confidence 34442111111 12111 11 346889999998 677777653 333333332 1
Q ss_pred CCC---ceeeeec-CC--CCeeEEEEc-CCCCeEEEEEecCCCeEEEEECCC-C---ceEEEec-C-CCcceEEEEECCC
Q 011916 367 SNG---HQLNSVD-TG--SQVCNLAWS-KNVNELVSTHGYSQNQIMVWKYPS-M---AKVSTLT-G-HSLRVLYLATSPD 433 (475)
Q Consensus 367 ~~~---~~~~~~~-~~--~~v~~l~~s-~~~~~l~~~~g~~dg~I~iwd~~~-~---~~~~~l~-~-h~~~V~~l~~spd 433 (475)
+.. ..+..+. .+ ++-..+++. .+|..+++ -...+.|..|+..+ . +....+. . .-..+..+.+..+
T Consensus 257 ~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~--~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~ 334 (381)
T 3q6k_A 257 KQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFA--EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSK 334 (381)
T ss_dssp SSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEE--ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTT
T ss_pred hCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEE--eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCC
Confidence 121 2222232 22 445566775 56665555 56788999999865 1 1222222 1 2234677888777
Q ss_pred CCEEEEEe
Q 011916 434 GQTIVTGA 441 (475)
Q Consensus 434 g~~l~s~s 441 (475)
|.+.+...
T Consensus 335 g~Lwv~sn 342 (381)
T 3q6k_A 335 GGLWFMSN 342 (381)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 77655553
No 378
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=57.35 E-value=1.3e+02 Score=28.59 Aligned_cols=225 Identities=9% Similarity=0.027 Sum_probs=120.4
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCC-c------------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNS-K------------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVW 236 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~-~------------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iw 236 (475)
.+..++-.....++...++.|+.|-.... + ....+. ....|..|+. ...+.++-+.||.|..|
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~--l~~~i~~va~--G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKVVQVSA--GDSHTAALTDDGRVFLW 135 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC--CCSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec--CCCcEEEEec--CCCeEEEEcCCCcEEEe
Confidence 35556666667888889999999976431 1 111111 1235666554 34456666788999999
Q ss_pred EC--CC-Cee-----------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc------------------
Q 011916 237 DG--TQ-CKR-----------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY------------------ 284 (475)
Q Consensus 237 d~--~~-~~~-----------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~------------------ 284 (475)
-. .. +++ ...+ .....|..++......+.-..||.|..|-....++.
T Consensus 136 G~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 136 GSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp ECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred eCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 74 21 111 1111 233467777777677777788999999965432211
Q ss_pred ---EEEecC------ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------ee---EEEeccc---cceeEEE
Q 011916 285 ---ICKLAG------HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ--------PT---LRLTEHT---AAVKAIA 341 (475)
Q Consensus 285 ---~~~~~~------h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~--------~~---~~~~~h~---~~v~~l~ 341 (475)
...... ....|..|+...+ +.+.-..||.|+.|=....- .. ..+.... ..|..|+
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia 292 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS 292 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE
T ss_pred cccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEe
Confidence 011111 2245666665433 44444578999999765311 00 1111111 2366666
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCC------C---c---eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSN------G---H---QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~------~---~---~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
...+.. ++.+ .|+.|+.|-... + . ....+..-..|..++.-.. ..++ -..+|.|+.|=.
T Consensus 293 ~G~~hs-~al~----~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~--hs~a--lt~~G~v~~wG~ 363 (413)
T 1a12_A 293 GGQHHT-VCMD----SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGAS--VGYA--VTKDGRVFAWGM 363 (413)
T ss_dssp ECSSEE-EEEE----TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSS--EEEE--EETTSCEEEEEC
T ss_pred cccceE-EEEe----CCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcc--eEEE--EeCCCCEEEecC
Confidence 544332 3332 689999996532 1 0 0111122225555554332 3333 236889999965
Q ss_pred C
Q 011916 410 P 410 (475)
Q Consensus 410 ~ 410 (475)
.
T Consensus 364 n 364 (413)
T 1a12_A 364 G 364 (413)
T ss_dssp C
T ss_pred C
Confidence 4
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.87 E-value=1.4e+02 Score=31.20 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
.|.++.+ +..++++-+.|.++++|++++++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 467999999999999999999998776654
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.84 E-value=32 Score=35.13 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=41.7
Q ss_pred eEEecCCC-CEEEEEcC-------------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE
Q 011916 172 NLVDWSSQ-NVLAVGLG-------------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG 227 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~~-------------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g 227 (475)
-.|.+++. +|+.+..+ +.+.+.+..++++.+++.......++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34777776 45554432 2467778888998888876667899999999999988775
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.86 E-value=1.4e+02 Score=27.72 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=121.1
Q ss_pred EEEEEcCCeEEEEECCC-------CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE---CCC------Ceee
Q 011916 181 VLAVGLGTCVYLWTASN-------SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD---GTQ------CKRV 244 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~-------~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd---~~~------~~~~ 244 (475)
++..+..|.|+--.+.+ ++-..-..+...+.+..+........|+.-+..|.++-.. +.. |..+
T Consensus 6 ~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i 85 (327)
T 3uc1_A 6 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHV 85 (327)
T ss_dssp EEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEH
T ss_pred EEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEH
Confidence 56667777777554321 1111222223355666666666677788888888876554 322 2222
Q ss_pred EEe-c-CCCCceEEEE-eC----CCEEEEEeCCCcEEEEECCCC------CccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 245 RTF-G-GHQTRAGVLA-WN----SRILSSGSRDRNILQHDLRVS------SDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 245 ~~~-~-~h~~~v~~l~-~~----~~~l~sgs~dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
..+ . .....|.++. .. ..+++..+.+|.|+--.+..- +.....+.. ...+..+........|+..+
T Consensus 86 ~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T 164 (327)
T 3uc1_A 86 ANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVS 164 (327)
T ss_dssp HHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEE
T ss_pred HHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEE
Confidence 111 1 1234455443 32 579999999999998876521 111112333 34565555555566788888
Q ss_pred CCCcEEEEECC--CCc---------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------ceee
Q 011916 312 NDNQLLVWNQH--SQQ---------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-------HQLN 373 (475)
Q Consensus 312 ~Dg~I~iwd~~--~~~---------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-------~~~~ 373 (475)
..|.+..+... .-. ....+. ....|.++...+.+.+++... ..|.++.-.+... +-+.
T Consensus 165 ~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T---~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 165 ANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVAT---SGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp TTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEE---TTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEe---CCCcEEEEEHHHccccCcCCCcEE
Confidence 89998888776 211 111222 234566665555555555543 6888888775432 1122
Q ss_pred eec--C-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 374 SVD--T-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 374 ~~~--~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.+. . ...+..+....+...++. .+.+|.+.-++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l--~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYA--VTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEE--EEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEE--EcCCCeEEEEehh
Confidence 222 1 344555555445555665 4467777777653
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.91 E-value=1.4e+02 Score=27.39 Aligned_cols=154 Identities=13% Similarity=0.055 Sum_probs=91.3
Q ss_pred CCCceeEEecC-CCCEEEEEcCCeEEEEECCC---C----cEE---EEeeCCCCCcEEEEEEc---CCCCEEEEEeCCCe
Q 011916 167 DDFYLNLVDWS-SQNVLAVGLGTCVYLWTASN---S----KVT---RLCDLGPGDSVCSVQWT---REGSYISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws-~~~~la~~~~~~V~lw~~~~---~----~~~---~~~~~~~~~~V~~v~~s---pdg~~la~g~~dg~ 232 (475)
+|+.+..+.-+ .+.++..+..|.++-..... . .-. ..+.+..++.|.++... .++.+++..+.+|.
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 45544444333 46899999999887776532 1 111 12234556677776543 35678999999999
Q ss_pred EEEEECCC-------CeeeEEecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCC---CCc---cEE--EecCccCCE
Q 011916 233 VQVWDGTQ-------CKRVRTFGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRV---SSD---YIC--KLAGHKSEV 295 (475)
Q Consensus 233 v~iwd~~~-------~~~~~~~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~---~~~---~~~--~~~~h~~~V 295 (475)
++--.+.. +...-.+..+ ..+..+.. + .+.++..+.+|.+..++... .+. -+. .+. ....|
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~V 198 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKV 198 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEE
Confidence 99887642 2122223333 44443333 3 46788888999888887631 111 111 122 23557
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.++....++..+++.+..|.++-.++.
T Consensus 199 v~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 199 VSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 776655556678888888988888764
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=50.40 E-value=83 Score=28.09 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=69.6
Q ss_pred CCCceeEEecC-CCCEEEEEcCCeEEEEECCC-------CcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 167 DDFYLNLVDWS-SQNVLAVGLGTCVYLWTASN-------SKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 167 ~d~~v~~l~ws-~~~~la~~~~~~V~lw~~~~-------~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
+|+.+..+.-+ .+.++..+..|.++-..+.. |... ..+.+..++.|.++....++.+|+.++.+|.++...
T Consensus 32 ~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~ 111 (256)
T 1zvt_A 32 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 111 (256)
T ss_dssp TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeE
Confidence 45555444443 35899999999877765532 1110 123345567888875445667888999999999987
Q ss_pred CCC-------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECC
Q 011916 238 GTQ-------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 238 ~~~-------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~ 279 (475)
+.. +.....+.....-|..... .++.++..+.+|.+..+.+.
T Consensus 112 ~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 112 FNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp GGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred HHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 643 2333334332222333333 24678888899998888774
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.12 E-value=1.9e+02 Score=27.45 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCceeEEecCC-CCEEEEEcCCeEEEEECCC---------CcE-EEEeeCCCCCcEEEEEEcC---CCCEEEEEeCCCe
Q 011916 167 DDFYLNLVDWSS-QNVLAVGLGTCVYLWTASN---------SKV-TRLCDLGPGDSVCSVQWTR---EGSYISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws~-~~~la~~~~~~V~lw~~~~---------~~~-~~~~~~~~~~~V~~v~~sp---dg~~la~g~~dg~ 232 (475)
+|+.+..+.-+. +.++..+..|.++-..... |.. ..++.+..++.|.++.... ++.+|+.++..|.
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 124 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT 124 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 455544444444 4688899999887776431 111 1223345567777765442 4569999999999
Q ss_pred EEEEECCCC-------eeeEEecCCCCceEEEE-eC-CCEEEEEeCCCcEEEEECC
Q 011916 233 VQVWDGTQC-------KRVRTFGGHQTRAGVLA-WN-SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 233 v~iwd~~~~-------~~~~~~~~h~~~v~~l~-~~-~~~l~sgs~dg~I~iwd~~ 279 (475)
++...+... .....+.. ...+..+. .+ .+.|+..+.+|.+..+...
T Consensus 125 vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 125 VKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred EEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 998875432 22222333 23333333 34 4678888889988888653
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.85 E-value=1.3e+02 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
.|.++.+ +..+|++-+.|.++++|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 477999999999999999999998877653
No 386
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=46.67 E-value=2.7e+02 Score=28.97 Aligned_cols=247 Identities=12% Similarity=0.088 Sum_probs=127.6
Q ss_pred CceeccCCCCCCC----CceeEEe-cCCC-CEEEEE--cCC----eEEEEECCCCcEEEEeeCCCC--C------cEEEE
Q 011916 156 PHKVLDAPSLQDD----FYLNLVD-WSSQ-NVLAVG--LGT----CVYLWTASNSKVTRLCDLGPG--D------SVCSV 215 (475)
Q Consensus 156 p~~~l~~p~~~~d----~~v~~l~-ws~~-~~la~~--~~~----~V~lw~~~~~~~~~~~~~~~~--~------~V~~v 215 (475)
.+.+||.-.+..+ ..+..++ .+++ +.++.+ .+| .|+++|+.+++.+.-- +... . ....+
T Consensus 112 wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~-~~~~~k~~~~~~~~~~~~ 190 (711)
T 4hvt_A 112 WEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG-FEPITNSGKLLEGKFTYP 190 (711)
T ss_dssp CEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC-SCCBCTTCCBCCEETCCE
T ss_pred cEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC-ccccccccccccccccee
Confidence 4666665444422 4455555 6665 444443 343 6999999999865311 0100 0 11345
Q ss_pred EEcCCCCEEEEEeC-----------CCeEEEEECCCC--eeeEEecCCCCceEEEEe---CCC-----EEEEEeCC---C
Q 011916 216 QWTREGSYISVGTN-----------LGQVQVWDGTQC--KRVRTFGGHQTRAGVLAW---NSR-----ILSSGSRD---R 271 (475)
Q Consensus 216 ~~spdg~~la~g~~-----------dg~v~iwd~~~~--~~~~~~~~h~~~v~~l~~---~~~-----~l~sgs~d---g 271 (475)
+|. |++.+++++. ...|+.|.+-+. +-...+.+....+..-.+ ++. .+++.+.+ .
T Consensus 191 ~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 269 (711)
T 4hvt_A 191 TWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNY 269 (711)
T ss_dssp EEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCE
T ss_pred eEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCce
Confidence 887 4445555432 246888887654 223344443333322122 343 24443322 3
Q ss_pred cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCc-------eeEE-Ee-c
Q 011916 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG----------GNDNQLLVWNQHSQQ-------PTLR-LT-E 332 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg----------~~Dg~I~iwd~~~~~-------~~~~-~~-~ 332 (475)
.+.+.|..........+...... .+..+.++.+++.. ...+.|.+.|+.++. .... +. .
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (711)
T 4hvt_A 270 DNYILDTKYKNLKLQKINMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT 347 (711)
T ss_dssp EEEEEECSSSSCEEEECCSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC
T ss_pred eEEEEcCCCCCCcceEeecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC
Confidence 45555654222232333222221 12334455555532 235779999987632 2222 32 2
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCc-eeee-ec--CCCCeeEEEEcCCCCeEEEEEec--CCCeE
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGH-QLNS-VD--TGSQVCNLAWSKNVNELVSTHGY--SQNQI 404 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~-~~~~-~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I 404 (475)
....+..+.|..+ .++++.. .++ .|.++|+.++. .... +. ..+.+......+++..++....+ .-+.+
T Consensus 348 ~~~~l~~~~~~~~--~l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~ 423 (711)
T 4hvt_A 348 ANEVFNFISTTKD--RVFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTI 423 (711)
T ss_dssp TTEEEEEEEECSS--CEEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred CCCeEEEEEEECC--EEEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence 3456788899876 3555543 454 57788876664 2333 32 23456667777887776654332 34678
Q ss_pred EEEECC
Q 011916 405 MVWKYP 410 (475)
Q Consensus 405 ~iwd~~ 410 (475)
+.+|..
T Consensus 424 ~~~d~~ 429 (711)
T 4hvt_A 424 YLWVKT 429 (711)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 888876
No 387
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=46.55 E-value=2.2e+02 Score=27.79 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=84.2
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECC---CCc------------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTAS---NSK------------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQV 233 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~---~~~------------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v 233 (475)
..+..++-.....++...+|.|+.|-.. .++ ....+..-....|..|+.. ..+.++-+.+|.|
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCCeE
Confidence 4456677667778888999999999852 111 1111111112346666543 4566667788999
Q ss_pred EEEECCCCeeeE-------------EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc--------------EE
Q 011916 234 QVWDGTQCKRVR-------------TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY--------------IC 286 (475)
Q Consensus 234 ~iwd~~~~~~~~-------------~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--------------~~ 286 (475)
..|-......+. ........|..++-.....+.-..+|.|..|-....++. ..
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~ 305 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPK 305 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEE
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccc
Confidence 999654321110 000011457777776677777788999999965422210 11
Q ss_pred EecC-ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 287 KLAG-HKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 287 ~~~~-h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+.. ....|..|+... ..-+.-..||.|+.|=..
T Consensus 306 ~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 306 RLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp ECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEEC
T ss_pred cccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECC
Confidence 1111 123466665532 344444678888888643
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.95 E-value=2.2e+02 Score=26.89 Aligned_cols=229 Identities=11% Similarity=0.016 Sum_probs=119.2
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC---------CeeeEEecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEE---CCCC-
Q 011916 217 WTREGSYISVGTNLGQVQVWDGTQ---------CKRVRTFGGHQTRAGVLAW-N-SRILSSGSRDRNILQHD---LRVS- 281 (475)
Q Consensus 217 ~spdg~~la~g~~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd---~~~~- 281 (475)
+-++..++++.+.+|.|+--.+.. +.....++. ...+..+.. + .+.|+..+..|.++-+. +...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346788999999999998754321 112222332 333333332 3 46677777788776554 3221
Q ss_pred ----CccEE---EecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCC-------ceeEEEeccccceeEEEECC
Q 011916 282 ----SDYIC---KLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQ-------QPTLRLTEHTAAVKAIAWSP 344 (475)
Q Consensus 282 ----~~~~~---~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~-------~~~~~~~~h~~~v~~l~~sp 344 (475)
+..+. .+. ....|.++..-. ++.+|+.++..|.++...+... .....+.. .+.+..+....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 11111 122 234565554332 4568999999999999886432 11223333 33344444433
Q ss_pred CCCcEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeeEEEEcC---------------------------
Q 011916 345 HQSSLLASGGGTADRCIRFWNTSN---------GHQLNSVDTGSQVCNLAWSK--------------------------- 388 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~--------------------------- 388 (475)
....++... ..|.+..++... |...-.+..+..|..+...+
T Consensus 160 ~~~~i~l~T---~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 160 GDRDVLLFA---SNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp SCCEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------
T ss_pred CCceEEEEe---CCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccc
Confidence 333344433 577777776532 22222233455666665544
Q ss_pred --------CCCeEEEEEecCCCeEEEEECCCC-------ceEE--EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 389 --------NVNELVSTHGYSQNQIMVWKYPSM-------AKVS--TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 389 --------~~~~l~~~~g~~dg~I~iwd~~~~-------~~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
++..+++ .+..|..+...+... +-+. .+....+.+..+.+..+...|+..+..|.+.-..+
T Consensus 237 ~~~~~~~~~~~~il~--vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 237 VIDVADNGDVAYILT--ATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ----------CEEEE--EETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccccccCCceEEE--eeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 3345666 557888777765321 1122 22223345555544444455666667777666665
Q ss_pred CC
Q 011916 452 FP 453 (475)
Q Consensus 452 ~~ 453 (475)
..
T Consensus 315 ~~ 316 (370)
T 3l6v_A 315 SE 316 (370)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=39.35 E-value=1.2e+02 Score=22.93 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=25.4
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~ 240 (475)
..|....||.+.||+...+...=.........-..+.+..+|++++... ++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3444455666666654322211111001111123455666776555432 3433 666443
No 390
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=37.71 E-value=2.7e+02 Score=26.42 Aligned_cols=183 Identities=9% Similarity=0.067 Sum_probs=100.3
Q ss_pred CeEEEEECCCC--cEEEEeeCC-----CCCcEEEEEEc---CC----CCEEEEEe-CCCeEEEEECCCCeeeEEecCCCC
Q 011916 188 TCVYLWTASNS--KVTRLCDLG-----PGDSVCSVQWT---RE----GSYISVGT-NLGQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~--~~~~~~~~~-----~~~~V~~v~~s---pd----g~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~ 252 (475)
-.|.+||+.++ ++++.+.+. ....+..+.+. ++ +.++.+.. ..+-|.|+|+.+++.-+.+..+-
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~- 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTF- 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGG-
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCC-
Confidence 36899999999 999988774 23567888887 22 33444443 35789999999998887663111
Q ss_pred ceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC----CCEEEEEeCCC-cEEEEE---CCCC
Q 011916 253 RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD----DRELASGGNDN-QLLVWN---QHSQ 324 (475)
Q Consensus 253 ~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~----~~~lasg~~Dg-~I~iwd---~~~~ 324 (475)
..+.... +.+ .+.... + ...|.+|+++|+ ++.|......+ .++-.. ++..
T Consensus 202 -----~pd~~~~-----------~~i--~G~~~~-~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~ 259 (381)
T 3q6k_A 202 -----KAERPTK-----------FDY--GGKEYE-F---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK 259 (381)
T ss_dssp -----SCCSCEE-----------EEE--TTEEEE-E---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST
T ss_pred -----ccccCcc-----------eEE--CCEEeE-e---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc
Confidence 0010000 001 111111 1 245899999997 77777766544 333333 1221
Q ss_pred ---ceeEEEecc--ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-C---ceeeeecC---CCCeeEEEEcCCCCe
Q 011916 325 ---QPTLRLTEH--TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-G---HQLNSVDT---GSQVCNLAWSKNVNE 392 (475)
Q Consensus 325 ---~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~---~~~~~~~~---~~~v~~l~~s~~~~~ 392 (475)
..+..+... ...-..++..+....|+++-- ....|..|+..+ . .....+.. -..+..+.+..+|..
T Consensus 260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~--~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~L 337 (381)
T 3q6k_A 260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA--NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGL 337 (381)
T ss_dssp TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES--SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCE
T ss_pred chhhceEEeeecCCCCCcceEEEeCCCCeEEEEec--cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeE
Confidence 122222211 123345667533333666543 789999999875 1 12222221 124666776666654
Q ss_pred EEE
Q 011916 393 LVS 395 (475)
Q Consensus 393 l~~ 395 (475)
.+.
T Consensus 338 wv~ 340 (381)
T 3q6k_A 338 WFM 340 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=36.67 E-value=2.6e+02 Score=25.81 Aligned_cols=155 Identities=6% Similarity=-0.025 Sum_probs=89.9
Q ss_pred CCCceeEEecC-CCCEEEEEcCCeEEEEECCC---------CcE-EEEeeCCCCCcEEEEEEcC---CCCEEEEEeCCCe
Q 011916 167 DDFYLNLVDWS-SQNVLAVGLGTCVYLWTASN---------SKV-TRLCDLGPGDSVCSVQWTR---EGSYISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws-~~~~la~~~~~~V~lw~~~~---------~~~-~~~~~~~~~~~V~~v~~sp---dg~~la~g~~dg~ 232 (475)
+|+.+..+.-+ .+.++..+..|.++-..... |.. ...+.+..++.|.++...+ ++.+|+.++.+|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 45544444333 45899999999887776532 211 1223344566677654433 2678999999999
Q ss_pred EEEEECCC--------CeeeEEecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCC---CC---ccEEEec-CccCCE
Q 011916 233 VQVWDGTQ--------CKRVRTFGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRV---SS---DYICKLA-GHKSEV 295 (475)
Q Consensus 233 v~iwd~~~--------~~~~~~~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~---~~---~~~~~~~-~h~~~V 295 (475)
++-..+.. +...-.+... ..+..+.. + .+.|+..+.+|.+..+.... .+ .-+..+. .....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99987642 2222223322 34443333 3 56788889999988887641 11 1111111 123456
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 011916 296 CGLKWSHDDR-ELASGGNDNQLLVWNQH 322 (475)
Q Consensus 296 ~~l~~s~~~~-~lasg~~Dg~I~iwd~~ 322 (475)
.++..-+++. .|++.+..|..+..++.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 6665444444 78888888888877765
No 392
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=36.32 E-value=2.6e+02 Score=25.77 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=118.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC----eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEEC---CCCC-----ccE
Q 011916 219 REGSYISVGTNLGQVQVWDGTQC----KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDL---RVSS-----DYI 285 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~---~~~~-----~~~ 285 (475)
|+..++++.+.+|.|+--.+... .....+.....-+..+.- ..+.|+..+..|.+.-... ...+ ..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 56677888888898876654311 101112222222222222 3567777778887665543 2111 111
Q ss_pred E---EecCccCCEEEE-EEcC--CCCEEEEEeCCCcEEEEECCC--------CceeEEEeccccceeEEEECCCCCcEEE
Q 011916 286 C---KLAGHKSEVCGL-KWSH--DDRELASGGNDNQLLVWNQHS--------QQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 286 ~---~~~~h~~~V~~l-~~s~--~~~~lasg~~Dg~I~iwd~~~--------~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
. .+. ....|.++ .... ++.+|+.++.+|.++...+.. +.....+... +.+..+........++.
T Consensus 83 ~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 83 ANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEE
T ss_pred hhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEE
Confidence 0 111 22345554 3332 256889999999999988742 2111223322 44444444443444544
Q ss_pred EecCCCCCeEEEEECCC---------CceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCC-------Cce
Q 011916 352 SGGGTADRCIRFWNTSN---------GHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPS-------MAK 414 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~-------~~~ 414 (475)
.. .+|.+..++... |.....+..+..|..+...+++. .+++ .+..|..+..++.. ++-
T Consensus 161 ~T---~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~--vt~~G~gKr~~~~e~~~~~Rg~kG 235 (323)
T 1wp5_A 161 VT---HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVV--ATQRGAVKKMKLTEFEKATRAKRG 235 (323)
T ss_dssp EE---TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEE--EETTSEEEEEEGGGSCCCCTTSCC
T ss_pred Ee---CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEE--EECCCceEEEEHHHccccCCCCCC
Confidence 33 688888887642 12222233455677765555444 5666 44677777766532 122
Q ss_pred EEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 415 VSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 415 ~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+..+. .....+..+....++..++..+..|.+.-..+..-
T Consensus 236 v~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i 278 (323)
T 1wp5_A 236 VVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI 278 (323)
T ss_dssp EECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred EECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence 22222 22224554333333455667778888777777653
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=35.81 E-value=2.9e+02 Score=26.16 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=103.1
Q ss_pred ceeEEecCCCCEEEEEcCC-eEEEEECCCC---------cEE--EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 170 YLNLVDWSSQNVLAVGLGT-CVYLWTASNS---------KVT--RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~-~V~lw~~~~~---------~~~--~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
.+..++......++...++ .|+.|-.... ... ..+..-....|..|+. ...+.++-+.+|.|+.|-
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWG 146 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeC
Confidence 4566777777777777765 9999964321 111 1111112335666654 345666667889999997
Q ss_pred CCCCe-----------eeEEecC-CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc----------EEEecC-ccCC
Q 011916 238 GTQCK-----------RVRTFGG-HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY----------ICKLAG-HKSE 294 (475)
Q Consensus 238 ~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~~-h~~~ 294 (475)
..... ....+.. ....|..++-.....+.-..+|.|..|-....++. ...+.. ....
T Consensus 147 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~ 226 (406)
T 4d9s_A 147 RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCC
T ss_pred CCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCce
Confidence 54311 1111221 23367788877777777789999999965422211 111111 1234
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------ee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQ----------PT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~----------~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
|..++.. ....+.-..||.|+.|-....- .. ..+.. ....|..|+.-.... ++.+ .|+.|+
T Consensus 227 i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs-~alt----~~G~v~ 299 (406)
T 4d9s_A 227 MSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT-MALT----SDGKLY 299 (406)
T ss_dssp EEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEE-EEEE----TTSCEE
T ss_pred EEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEE-EEEc----CCCeEE
Confidence 6666543 3345555678999999754211 00 11111 123366666543322 3332 689999
Q ss_pred EEECC
Q 011916 363 FWNTS 367 (475)
Q Consensus 363 iwd~~ 367 (475)
.|=..
T Consensus 300 ~wG~n 304 (406)
T 4d9s_A 300 GWGWN 304 (406)
T ss_dssp EEECC
T ss_pred EeeCC
Confidence 99654
No 394
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=27.81 E-value=4.3e+02 Score=25.69 Aligned_cols=145 Identities=10% Similarity=0.176 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCeEEEEECCCCc-----EEEEeeCCCC-----CcEEEEEEcCCC---------CEEEEEeCCCeEEEEEC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSK-----VTRLCDLGPG-----DSVCSVQWTREG---------SYISVGTNLGQVQVWDG 238 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~-----~~~~~~~~~~-----~~V~~v~~spdg---------~~la~g~~dg~v~iwd~ 238 (475)
..+.+.+-....++||+..... ..+.+.+.+. ....++.+.+.. -.+++.. +|.|+.|.-
T Consensus 47 ~~GyAlvv~~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsp-tG~VryWes 125 (450)
T 1xks_A 47 EGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR-EGSIRYWPS 125 (450)
T ss_dssp TTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECT-TCEEEEESC
T ss_pred CCcEEEEEeCCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcC-CccEEEccc
Confidence 5577777778999999987651 2222333322 223444433321 2444444 899999984
Q ss_pred CCC--eeeE-EecCCC-CceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCcc--------------------
Q 011916 239 TQC--KRVR-TFGGHQ-TRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHK-------------------- 292 (475)
Q Consensus 239 ~~~--~~~~-~~~~h~-~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~-------------------- 292 (475)
-.. +.+. .+.-.. ..|..+.- .+.-++.+..-|.+....++........ +....
T Consensus 126 Is~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsirGkp~l~~~~l~~~~G~l~gi~~~~sSl~G~~s~~ 205 (450)
T 1xks_A 126 LAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPS 205 (450)
T ss_dssp TTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEECTTSCEEEEECTTCCCC------------------
T ss_pred cCCCCceEEEEecCCCCceEEEEeecCCceEEEEeccceEEEEEecCCceEEEEEecCCCcccccccccccccccccCCC
Confidence 221 2221 111122 45555543 5666666666677766666522211111 11111
Q ss_pred C--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 293 S--EVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 293 ~--~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
. ...++.+...++.+++.+. +.+.+|++..+
T Consensus 206 ~~ia~v~~~~~~g~r~v~ilT~-~~lq~W~l~~~ 238 (450)
T 1xks_A 206 SDLTLSSVLWDRERSSFYSLTS-SNISKWELDDS 238 (450)
T ss_dssp CCCCEEEEEEETTTTEEEEEES-SEEEEEEECSS
T ss_pred cceEEEEeccCCCcEEEEEEcC-CceEEEEecCC
Confidence 0 1123445556677777666 45999999554
No 395
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.70 E-value=2.6e+02 Score=27.64 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=43.6
Q ss_pred CeeEEEEcC----CCCeEEEEEecCCCeEEEEEC-CCC-------ceEEEecC--CCcceEEEEECCCCCEEEEEeCCCC
Q 011916 380 QVCNLAWSK----NVNELVSTHGYSQNQIMVWKY-PSM-------AKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 380 ~v~~l~~s~----~~~~l~~~~g~~dg~I~iwd~-~~~-------~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
..+.++... ++++-++--|..+|.|.-.-+ ... ..+.++.- ...+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456665543 255544444889998754433 221 12334432 3578999999999999999998876
Q ss_pred EEE
Q 011916 446 LRF 448 (475)
Q Consensus 446 I~i 448 (475)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
Done!