Query 011918
Match_columns 475
No_of_seqs 148 out of 1373
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1E-73 2.2E-78 607.1 28.6 448 2-461 119-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.3E-54 2.9E-59 441.0 20.6 366 31-460 115-496 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.6E-46 3.5E-51 405.8 34.6 361 32-454 84-654 (654)
4 PF00854 PTR2: POT family; In 100.0 5.1E-48 1.1E-52 395.9 10.2 337 29-395 29-371 (372)
5 PRK15462 dipeptide/tripeptide 100.0 2.6E-42 5.6E-47 361.9 30.6 370 34-460 101-488 (493)
6 PRK10207 dipeptide/tripeptide 100.0 4.6E-38 9.9E-43 332.9 32.1 365 35-460 107-485 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 1.9E-37 4E-42 327.6 30.9 360 33-457 102-474 (475)
8 PRK09584 tppB putative tripept 100.0 1.8E-36 3.9E-41 321.9 30.1 367 33-462 112-490 (500)
9 PRK10489 enterobactin exporter 99.3 7.9E-10 1.7E-14 114.8 26.5 299 33-461 110-409 (417)
10 PRK11646 multidrug resistance 99.2 2E-09 4.3E-14 111.5 20.3 288 32-448 98-385 (400)
11 PRK03545 putative arabinose tr 99.1 2.3E-08 5E-13 102.9 24.9 85 32-123 96-180 (390)
12 TIGR00893 2A0114 d-galactonate 99.1 2.7E-08 5.9E-13 100.6 24.9 86 32-124 81-166 (399)
13 PRK10054 putative transporter; 99.1 1.2E-08 2.6E-13 105.5 21.0 82 34-123 97-178 (395)
14 TIGR00902 2A0127 phenyl propri 99.1 4.6E-08 9.9E-13 100.5 24.2 280 32-446 93-374 (382)
15 TIGR00900 2A0121 H+ Antiporter 99.0 3E-08 6.6E-13 99.7 21.8 86 32-124 91-176 (365)
16 PRK09874 drug efflux system pr 99.0 2.6E-08 5.7E-13 102.5 21.6 85 32-124 106-190 (408)
17 TIGR00892 2A0113 monocarboxyla 99.0 1.5E-08 3.3E-13 106.8 20.2 62 347-408 332-393 (455)
18 PRK11551 putative 3-hydroxyphe 99.0 1.1E-07 2.3E-12 98.2 26.0 85 32-123 102-186 (406)
19 PRK15402 multidrug efflux syst 99.0 2E-07 4.3E-12 96.4 27.8 84 33-123 101-184 (406)
20 cd06174 MFS The Major Facilita 99.0 5.5E-08 1.2E-12 96.9 21.9 258 32-447 86-348 (352)
21 TIGR00879 SP MFS transporter, 99.0 1.2E-07 2.6E-12 98.8 25.0 85 33-124 127-214 (481)
22 PRK05122 major facilitator sup 99.0 2.3E-07 5.1E-12 95.5 26.6 78 33-117 112-189 (399)
23 PF05977 MFS_3: Transmembrane 99.0 1.5E-07 3.2E-12 100.7 25.4 266 31-408 101-367 (524)
24 PRK10504 putative transporter; 99.0 5.3E-07 1.2E-11 95.1 28.7 88 32-126 97-184 (471)
25 PF07690 MFS_1: Major Facilita 99.0 2.3E-08 4.9E-13 100.2 17.2 87 32-125 84-170 (352)
26 TIGR00894 2A0114euk Na(+)-depe 99.0 2.8E-07 6E-12 97.2 26.1 84 33-123 131-215 (465)
27 PRK11128 putative 3-phenylprop 99.0 1.5E-07 3.3E-12 96.6 23.5 259 32-408 93-353 (382)
28 PRK06814 acylglycerophosphoeth 98.9 1.2E-07 2.5E-12 111.1 22.8 287 31-408 106-394 (1140)
29 PRK12382 putative transporter; 98.9 8.6E-07 1.9E-11 91.1 25.0 77 32-115 111-187 (392)
30 TIGR00899 2A0120 sugar efflux 98.9 8.7E-07 1.9E-11 89.9 24.7 87 34-125 88-174 (375)
31 TIGR00901 2A0125 AmpG-related 98.9 3.8E-07 8.3E-12 92.4 21.6 86 32-124 82-175 (356)
32 PRK11010 ampG muropeptide tran 98.8 2.1E-06 4.5E-11 91.5 27.0 86 31-123 105-191 (491)
33 TIGR00710 efflux_Bcr_CflA drug 98.8 3.2E-06 6.9E-11 86.0 27.1 87 32-125 92-178 (385)
34 PRK14995 methyl viologen resis 98.8 7.1E-07 1.5E-11 95.1 22.4 87 32-124 93-179 (495)
35 PRK11102 bicyclomycin/multidru 98.8 2.7E-06 5.8E-11 86.7 25.4 86 32-124 78-163 (377)
36 TIGR00711 efflux_EmrB drug res 98.8 9.7E-07 2.1E-11 93.1 22.7 86 32-124 89-174 (485)
37 TIGR00792 gph sugar (Glycoside 98.8 1.3E-06 2.8E-11 91.0 23.1 111 267-409 262-379 (437)
38 PRK03893 putative sialic acid 98.8 1E-06 2.2E-11 93.4 22.6 79 32-117 107-185 (496)
39 PRK10077 xylE D-xylose transpo 98.8 1.4E-06 3E-11 92.0 23.3 84 33-123 120-211 (479)
40 KOG1330 Sugar transporter/spin 98.8 5.9E-08 1.3E-12 99.2 11.8 88 31-125 119-207 (493)
41 TIGR00895 2A0115 benzoate tran 98.8 2.2E-06 4.7E-11 87.3 23.4 85 32-123 104-188 (398)
42 TIGR00926 2A1704 Peptide:H+ sy 98.7 1.3E-07 2.8E-12 103.4 14.8 252 32-330 81-342 (654)
43 PRK11663 regulatory protein Uh 98.7 2.2E-06 4.8E-11 89.7 23.5 81 33-120 111-191 (434)
44 PRK15011 sugar efflux transpor 98.7 3.3E-06 7.2E-11 87.1 23.2 71 49-125 121-192 (393)
45 PRK10473 multidrug efflux syst 98.7 1.4E-05 3E-10 82.1 27.4 84 33-123 91-174 (392)
46 PRK12307 putative sialic acid 98.7 2.5E-06 5.3E-11 88.6 21.3 78 32-116 105-182 (426)
47 PRK10213 nepI ribonucleoside t 98.7 8.7E-06 1.9E-10 84.1 25.1 83 31-120 106-188 (394)
48 TIGR00898 2A0119 cation transp 98.7 9.1E-06 2E-10 86.5 25.6 83 32-124 179-261 (505)
49 TIGR01301 GPH_sucrose GPH fami 98.7 1.3E-05 2.8E-10 84.7 26.2 303 34-408 115-442 (477)
50 TIGR00788 fbt folate/biopterin 98.7 1.3E-06 2.8E-11 92.5 18.9 83 36-123 123-205 (468)
51 PRK08633 2-acyl-glycerophospho 98.6 4.8E-06 1E-10 97.5 25.0 63 33-102 103-165 (1146)
52 PRK11195 lysophospholipid tran 98.6 1.6E-05 3.4E-10 82.2 25.9 77 37-121 92-168 (393)
53 TIGR00890 2A0111 Oxalate/Forma 98.6 2.4E-06 5.1E-11 86.2 19.1 85 32-124 90-174 (377)
54 PRK11652 emrD multidrug resist 98.6 1.8E-05 3.9E-10 81.4 25.5 84 32-122 95-178 (394)
55 PRK15403 multidrug efflux syst 98.6 1.2E-05 2.7E-10 83.5 24.5 85 32-123 103-187 (413)
56 PRK11902 ampG muropeptide tran 98.6 3.7E-05 8E-10 79.5 27.3 84 32-122 93-177 (402)
57 PRK03633 putative MFS family t 98.6 1.7E-05 3.6E-10 81.4 24.5 72 32-110 93-164 (381)
58 TIGR01299 synapt_SV2 synaptic 98.6 2.3E-05 4.9E-10 87.1 26.9 85 32-123 254-351 (742)
59 PRK09528 lacY galactoside perm 98.6 3.1E-06 6.7E-11 88.0 18.5 136 266-450 266-402 (420)
60 PRK10091 MFS transport protein 98.6 2.5E-05 5.5E-10 80.1 25.0 84 32-122 90-173 (382)
61 PF13347 MFS_2: MFS/sugar tran 98.6 1.1E-05 2.3E-10 84.3 22.5 306 32-455 102-425 (428)
62 PRK11043 putative transporter; 98.6 2.2E-05 4.8E-10 80.9 24.4 85 32-123 93-177 (401)
63 PRK09848 glucuronide transport 98.5 1.2E-05 2.5E-10 84.5 22.3 87 302-408 293-386 (448)
64 PLN00028 nitrate transmembrane 98.5 8.3E-06 1.8E-10 86.5 20.6 83 33-123 124-215 (476)
65 PRK11273 glpT sn-glycerol-3-ph 98.5 2.6E-05 5.6E-10 82.1 24.2 83 33-122 120-203 (452)
66 PRK03699 putative transporter; 98.5 5.2E-05 1.1E-09 78.1 25.5 85 32-123 94-179 (394)
67 TIGR00883 2A0106 metabolite-pr 98.5 7.4E-06 1.6E-10 83.1 19.0 81 35-122 98-186 (394)
68 TIGR00903 2A0129 major facilit 98.5 4.3E-05 9.4E-10 78.4 24.7 83 32-122 78-160 (368)
69 PRK09705 cynX putative cyanate 98.5 3E-05 6.5E-10 80.0 23.6 82 32-121 96-178 (393)
70 TIGR00891 2A0112 putative sial 98.5 1E-05 2.3E-10 82.6 20.0 83 32-121 99-183 (405)
71 KOG2532 Permease of the major 98.4 1.4E-05 3E-10 84.4 18.1 84 35-125 130-214 (466)
72 PRK09669 putative symporter Ya 98.4 4.7E-05 1E-09 79.8 22.2 61 348-408 319-386 (444)
73 TIGR00881 2A0104 phosphoglycer 98.4 1.2E-05 2.6E-10 81.1 17.1 86 32-124 82-168 (379)
74 PRK10642 proline/glycine betai 98.4 0.00022 4.9E-09 75.8 27.4 76 35-117 120-203 (490)
75 PRK10406 alpha-ketoglutarate t 98.4 0.00012 2.5E-09 76.6 24.3 79 34-119 125-211 (432)
76 COG2814 AraJ Arabinose efflux 98.4 0.00034 7.3E-09 71.6 26.5 89 31-126 99-187 (394)
77 PRK10429 melibiose:sodium symp 98.3 6.2E-05 1.3E-09 79.8 21.8 61 348-408 324-391 (473)
78 TIGR01272 gluP glucose/galacto 98.3 0.00011 2.4E-09 73.6 21.9 87 31-124 8-110 (310)
79 TIGR00889 2A0110 nucleoside tr 98.3 0.00016 3.4E-09 75.5 23.9 94 349-452 309-403 (418)
80 TIGR00882 2A0105 oligosacchari 98.3 6.7E-05 1.5E-09 77.3 20.4 62 347-408 306-368 (396)
81 TIGR00896 CynX cyanate transpo 98.3 0.00014 3.1E-09 73.5 21.1 81 32-120 86-168 (355)
82 TIGR00712 glpT glycerol-3-phos 98.2 9E-05 1.9E-09 77.6 19.7 84 33-123 118-202 (438)
83 TIGR00897 2A0118 polyol permea 98.2 0.00064 1.4E-08 70.3 25.9 73 33-112 105-178 (402)
84 PRK09952 shikimate transporter 98.2 0.00054 1.2E-08 71.8 25.0 77 35-118 127-211 (438)
85 PRK15075 citrate-proton sympor 98.2 0.00037 8E-09 72.9 23.0 73 35-114 119-199 (434)
86 TIGR02718 sider_RhtX_FptX side 98.2 0.00062 1.3E-08 69.9 24.4 52 74-125 131-182 (390)
87 PRK09556 uhpT sugar phosphate 98.2 0.00018 3.8E-09 76.1 20.4 84 32-122 121-207 (467)
88 TIGR00887 2A0109 phosphate:H+ 98.1 0.0016 3.5E-08 69.5 26.6 82 33-121 115-219 (502)
89 PF03209 PUCC: PUCC protein; 98.1 0.0035 7.5E-08 64.1 26.2 64 347-410 300-363 (403)
90 COG2271 UhpC Sugar phosphate p 98.0 0.00026 5.6E-09 72.3 17.2 90 32-128 116-208 (448)
91 TIGR02332 HpaX 4-hydroxyphenyl 98.0 0.0016 3.5E-08 67.7 23.5 84 33-123 96-185 (412)
92 KOG1330 Sugar transporter/spin 97.9 6.2E-06 1.4E-10 84.6 3.3 156 266-472 72-229 (493)
93 PRK11462 putative transporter; 97.9 0.0014 3.1E-08 69.2 20.1 81 36-122 112-199 (460)
94 KOG2533 Permease of the major 97.8 0.0053 1.2E-07 65.3 24.1 87 32-125 133-225 (495)
95 TIGR00885 fucP L-fucose:H+ sym 97.8 0.0034 7.3E-08 65.4 20.6 86 31-123 92-203 (410)
96 TIGR02332 HpaX 4-hydroxyphenyl 97.7 0.0016 3.4E-08 67.7 17.9 109 267-408 48-156 (412)
97 PRK03545 putative arabinose tr 97.7 0.0012 2.6E-08 67.8 16.7 84 303-408 74-157 (390)
98 PRK11663 regulatory protein Uh 97.7 0.0022 4.8E-08 67.1 18.9 110 266-408 62-171 (434)
99 TIGR00893 2A0114 d-galactonate 97.7 0.00063 1.4E-08 68.6 14.3 136 265-449 32-167 (399)
100 TIGR00805 oat sodium-independe 97.7 0.0093 2E-07 65.7 23.3 87 32-125 171-279 (633)
101 PF11700 ATG22: Vacuole efflux 97.7 0.05 1.1E-06 57.8 27.9 58 354-411 386-443 (477)
102 PF07690 MFS_1: Major Facilita 97.7 0.00055 1.2E-08 68.3 12.6 133 265-446 35-167 (352)
103 TIGR00710 efflux_Bcr_CflA drug 97.6 0.0026 5.6E-08 64.6 17.4 111 265-408 43-153 (385)
104 PRK11551 putative 3-hydroxyphe 97.6 0.0026 5.7E-08 65.4 17.3 110 265-407 53-162 (406)
105 TIGR00881 2A0104 phosphoglycer 97.6 0.00046 1E-08 69.5 11.2 109 266-407 34-143 (379)
106 TIGR00900 2A0121 H+ Antiporter 97.6 0.0012 2.5E-08 66.2 13.9 116 265-408 37-152 (365)
107 PRK10213 nepI ribonucleoside t 97.6 0.0051 1.1E-07 63.5 18.6 109 267-408 60-168 (394)
108 PRK10133 L-fucose transporter; 97.5 0.018 3.9E-07 60.4 22.5 62 31-99 115-176 (438)
109 PF03092 BT1: BT1 family; Int 97.5 0.0032 6.8E-08 66.1 16.7 88 33-125 86-173 (433)
110 COG2814 AraJ Arabinose efflux 97.5 0.0033 7.1E-08 64.5 16.0 139 264-452 50-189 (394)
111 PRK14995 methyl viologen resis 97.5 0.0066 1.4E-07 64.7 18.9 111 265-408 44-155 (495)
112 TIGR00880 2_A_01_02 Multidrug 97.5 0.0058 1.3E-07 51.7 15.0 62 347-408 50-111 (141)
113 TIGR00711 efflux_EmrB drug res 97.4 0.0039 8.6E-08 65.6 16.2 112 264-408 39-150 (485)
114 PRK10091 MFS transport protein 97.4 0.0059 1.3E-07 62.6 17.0 111 265-408 41-151 (382)
115 KOG3626 Organic anion transpor 97.4 0.0069 1.5E-07 66.4 18.0 88 32-126 236-342 (735)
116 PF01306 LacY_symp: LacY proto 97.4 0.0069 1.5E-07 62.7 16.7 91 346-452 310-401 (412)
117 KOG2504 Monocarboxylate transp 97.4 0.01 2.2E-07 63.5 18.0 122 302-460 364-485 (509)
118 KOG3764 Vesicular amine transp 97.4 0.0008 1.7E-08 68.2 8.9 147 263-458 107-254 (464)
119 TIGR00886 2A0108 nitrite extru 97.4 0.006 1.3E-07 61.5 15.6 77 32-116 90-177 (366)
120 KOG3762 Predicted transporter 97.3 0.0013 2.9E-08 68.9 10.4 100 346-461 457-557 (618)
121 TIGR00891 2A0112 putative sial 97.3 0.0078 1.7E-07 61.3 15.7 111 265-408 50-160 (405)
122 TIGR01301 GPH_sucrose GPH fami 97.3 0.0099 2.1E-07 63.0 16.3 168 220-407 4-175 (477)
123 PRK10054 putative transporter; 97.3 0.0095 2.1E-07 61.5 16.0 111 265-408 46-156 (395)
124 PRK11102 bicyclomycin/multidru 97.2 0.013 2.8E-07 59.5 16.7 109 267-408 31-139 (377)
125 TIGR00886 2A0108 nitrite extru 97.2 0.03 6.6E-07 56.4 18.9 109 265-406 40-148 (366)
126 PRK12307 putative sialic acid 97.2 0.0094 2E-07 61.7 15.4 111 265-408 56-166 (426)
127 PRK09874 drug efflux system pr 97.2 0.029 6.3E-07 57.5 18.9 109 266-408 58-166 (408)
128 PRK11646 multidrug resistance 97.2 0.014 3E-07 60.4 16.4 81 306-408 79-159 (400)
129 PRK10473 multidrug efflux syst 97.2 0.015 3.2E-07 59.6 16.1 109 267-408 43-151 (392)
130 TIGR00895 2A0115 benzoate tran 97.1 0.0055 1.2E-07 62.1 12.6 62 347-408 104-165 (398)
131 TIGR01299 synapt_SV2 synaptic 97.1 0.033 7.1E-07 62.3 19.2 109 266-407 206-314 (742)
132 TIGR00890 2A0111 Oxalate/Forma 97.1 0.012 2.5E-07 59.1 14.5 109 265-407 41-149 (377)
133 PRK11273 glpT sn-glycerol-3-ph 97.1 0.039 8.4E-07 58.0 18.8 107 267-402 68-174 (452)
134 TIGR00805 oat sodium-independe 97.1 0.0069 1.5E-07 66.7 13.4 133 265-408 71-232 (633)
135 PRK10504 putative transporter; 97.1 0.026 5.6E-07 59.5 17.4 62 347-408 97-158 (471)
136 PRK15403 multidrug efflux syst 97.1 0.04 8.7E-07 57.3 18.4 84 347-446 103-186 (413)
137 KOG1237 H+/oligopeptide sympor 97.0 0.0013 2.8E-08 71.1 7.3 214 34-323 60-276 (571)
138 TIGR00894 2A0114euk Na(+)-depe 97.0 0.0095 2.1E-07 62.7 13.6 62 347-408 130-191 (465)
139 PRK15402 multidrug efflux syst 97.0 0.058 1.3E-06 55.6 18.9 62 347-408 100-161 (406)
140 PF03825 Nuc_H_symport: Nucleo 97.0 0.02 4.4E-07 59.4 15.4 93 351-453 304-397 (400)
141 PRK05122 major facilitator sup 97.0 0.0015 3.2E-08 67.2 7.0 95 34-135 303-397 (399)
142 PRK09556 uhpT sugar phosphate 97.0 0.011 2.4E-07 62.4 13.8 86 304-406 95-180 (467)
143 TIGR00879 SP MFS transporter, 97.0 0.019 4.1E-07 59.6 15.3 110 265-404 74-183 (481)
144 TIGR00903 2A0129 major facilit 96.9 0.033 7.2E-07 57.1 16.4 88 347-451 78-165 (368)
145 cd06174 MFS The Major Facilita 96.9 0.026 5.6E-07 55.9 15.0 111 265-408 37-147 (352)
146 PRK03699 putative transporter; 96.9 0.057 1.2E-06 55.5 18.0 61 347-407 94-154 (394)
147 TIGR00880 2_A_01_02 Multidrug 96.9 0.0026 5.6E-08 54.0 6.6 87 32-125 50-136 (141)
148 PRK03633 putative MFS family t 96.9 0.079 1.7E-06 54.2 18.7 111 265-408 44-154 (381)
149 TIGR00885 fucP L-fucose:H+ sym 96.9 0.054 1.2E-06 56.3 17.6 113 265-407 41-153 (410)
150 TIGR00712 glpT glycerol-3-phos 96.9 0.055 1.2E-06 56.6 17.6 113 265-406 64-176 (438)
151 PRK09705 cynX putative cyanate 96.9 0.027 5.9E-07 58.0 15.1 110 265-408 47-156 (393)
152 KOG0569 Permease of the major 96.9 0.28 6E-06 52.0 22.5 86 33-125 116-203 (485)
153 KOG2533 Permease of the major 96.8 0.029 6.4E-07 59.7 15.2 95 348-452 134-228 (495)
154 TIGR00901 2A0125 AmpG-related 96.8 0.069 1.5E-06 53.8 16.9 63 346-408 81-143 (356)
155 PRK15034 nitrate/nitrite trans 96.7 0.53 1.1E-05 49.8 23.3 59 32-98 127-185 (462)
156 TIGR00892 2A0113 monocarboxyla 96.7 0.087 1.9E-06 55.5 17.7 78 356-450 116-193 (455)
157 TIGR00924 yjdL_sub1_fam amino 96.7 0.018 4E-07 61.1 12.6 114 304-455 80-196 (475)
158 TIGR00898 2A0119 cation transp 96.7 0.021 4.6E-07 60.6 13.1 110 265-407 130-239 (505)
159 TIGR00887 2A0109 phosphate:H+ 96.6 0.029 6.3E-07 59.8 13.8 61 347-407 114-174 (502)
160 TIGR00806 rfc RFC reduced fola 96.6 0.12 2.6E-06 54.5 17.6 60 347-407 114-173 (511)
161 PTZ00207 hypothetical protein; 96.6 0.068 1.5E-06 58.1 16.4 119 302-454 90-208 (591)
162 PRK03893 putative sialic acid 96.6 0.11 2.3E-06 55.0 17.9 81 306-408 88-168 (496)
163 COG2211 MelB Na+/melibiose sym 96.6 0.62 1.3E-05 49.1 22.8 60 35-100 114-173 (467)
164 PRK11010 ampG muropeptide tran 96.6 0.083 1.8E-06 56.3 17.0 84 306-408 84-167 (491)
165 PRK11652 emrD multidrug resist 96.6 0.14 3.1E-06 52.4 18.1 62 347-408 95-156 (394)
166 KOG2615 Permease of the major 96.6 0.051 1.1E-06 55.2 13.8 58 351-408 355-412 (451)
167 PRK12382 putative transporter; 96.6 0.085 1.8E-06 54.0 16.2 119 265-408 54-172 (392)
168 KOG3764 Vesicular amine transp 96.5 0.17 3.6E-06 51.8 17.2 88 32-125 158-245 (464)
169 PRK11902 ampG muropeptide tran 96.5 0.12 2.7E-06 53.2 17.0 84 306-408 71-154 (402)
170 KOG3098 Uncharacterized conser 96.5 1.2 2.7E-05 46.8 23.9 164 267-461 280-445 (461)
171 COG2271 UhpC Sugar phosphate p 96.4 0.055 1.2E-06 55.7 13.1 84 300-405 91-174 (448)
172 PF06609 TRI12: Fungal trichot 96.4 0.87 1.9E-05 49.6 22.8 87 31-125 129-215 (599)
173 PRK11195 lysophospholipid tran 96.4 0.15 3.2E-06 52.6 16.4 108 265-408 41-148 (393)
174 PRK10489 enterobactin exporter 96.3 0.095 2.1E-06 54.2 14.8 116 265-408 55-170 (417)
175 TIGR00899 2A0120 sugar efflux 96.2 0.1 2.2E-06 52.6 14.4 90 347-452 86-177 (375)
176 PRK10207 dipeptide/tripeptide 96.2 0.068 1.5E-06 57.0 13.2 84 304-408 82-167 (489)
177 PRK11043 putative transporter; 96.2 0.16 3.4E-06 52.2 15.5 62 347-408 93-154 (401)
178 COG0738 FucP Fucose permease [ 96.2 0.81 1.8E-05 47.0 19.8 67 28-101 99-165 (422)
179 PRK10642 proline/glycine betai 96.2 0.077 1.7E-06 56.4 13.4 107 280-407 71-177 (490)
180 COG2807 CynX Cyanate permease 96.2 1.8 3.9E-05 44.0 22.9 87 32-126 98-185 (395)
181 PF03209 PUCC: PUCC protein; 96.1 0.68 1.5E-05 47.7 19.2 96 351-462 92-187 (403)
182 PRK10133 L-fucose transporter; 96.1 0.48 1E-05 49.7 18.8 111 266-406 65-175 (438)
183 PRK06814 acylglycerophosphoeth 96.0 0.13 2.7E-06 60.7 15.5 63 346-408 106-168 (1140)
184 PRK08633 2-acyl-glycerophospho 95.9 0.12 2.6E-06 60.7 15.0 62 347-408 102-163 (1146)
185 PRK10077 xylE D-xylose transpo 95.9 0.19 4.1E-06 52.8 15.1 60 348-407 120-179 (479)
186 PRK09584 tppB putative tripept 95.9 0.26 5.7E-06 52.7 16.0 117 304-457 89-207 (500)
187 TIGR00883 2A0106 metabolite-pr 95.8 0.1 2.2E-06 52.6 12.0 91 304-408 66-156 (394)
188 KOG2325 Predicted transporter/ 95.7 0.18 3.9E-06 53.2 13.5 161 265-458 74-236 (488)
189 KOG2816 Predicted transporter 95.7 1 2.2E-05 47.7 19.2 83 305-410 310-392 (463)
190 COG2223 NarK Nitrate/nitrite t 95.7 0.45 9.8E-06 49.0 15.8 78 42-128 114-194 (417)
191 TIGR00792 gph sugar (Glycoside 95.7 0.098 2.1E-06 54.2 11.6 84 306-405 73-157 (437)
192 KOG0255 Synaptic vesicle trans 95.7 3.8 8.2E-05 43.8 26.5 81 32-122 170-250 (521)
193 KOG0254 Predicted transporter 95.7 2.5 5.5E-05 45.2 22.5 84 32-122 141-225 (513)
194 KOG3626 Organic anion transpor 95.6 0.13 2.9E-06 56.6 12.3 152 301-458 160-350 (735)
195 TIGR00889 2A0110 nucleoside tr 95.6 0.027 5.9E-07 58.7 6.8 86 33-125 308-400 (418)
196 TIGR00897 2A0118 polyol permea 95.5 0.38 8.2E-06 49.6 15.1 113 265-406 51-164 (402)
197 KOG2532 Permease of the major 95.5 0.23 5E-06 52.6 13.4 116 302-452 102-217 (466)
198 PRK09952 shikimate transporter 95.4 0.22 4.8E-06 52.1 13.2 108 279-407 77-184 (438)
199 PRK10406 alpha-ketoglutarate t 95.3 0.37 8.1E-06 50.2 14.4 107 280-407 77-183 (432)
200 COG2270 Permeases of the major 95.3 1.9 4.2E-05 44.6 18.6 86 304-411 319-404 (438)
201 PLN00028 nitrate transmembrane 95.3 0.96 2.1E-05 47.9 17.5 58 348-406 124-181 (476)
202 TIGR00896 CynX cyanate transpo 95.0 0.83 1.8E-05 45.9 15.4 108 265-407 38-145 (355)
203 PRK15034 nitrate/nitrite trans 95.0 1.3 2.8E-05 46.9 17.0 81 304-402 101-181 (462)
204 PRK15011 sugar efflux transpor 94.7 1.7 3.6E-05 44.6 17.0 89 348-452 105-195 (393)
205 PF03137 OATP: Organic Anion T 94.4 0.0082 1.8E-07 64.7 -1.1 151 301-457 66-256 (539)
206 TIGR01272 gluP glucose/galacto 94.2 0.5 1.1E-05 47.2 11.5 63 346-408 8-70 (310)
207 TIGR02718 sider_RhtX_FptX side 94.0 1.4 3.1E-05 44.9 14.7 84 348-447 97-180 (390)
208 PF05977 MFS_3: Transmembrane 93.9 1.2 2.6E-05 48.0 14.2 116 265-408 48-163 (524)
209 TIGR00882 2A0105 oligosacchari 93.8 1.5 3.2E-05 45.0 14.3 56 351-408 102-157 (396)
210 PRK15462 dipeptide/tripeptide 93.6 1.8 3.8E-05 46.3 14.8 86 354-455 106-193 (493)
211 PF00854 PTR2: POT family; In 93.6 0.42 9.1E-06 48.9 9.8 128 305-461 3-133 (372)
212 PF06813 Nodulin-like: Nodulin 92.3 2.6 5.6E-05 40.8 12.6 121 302-455 65-185 (250)
213 KOG0254 Predicted transporter 92.2 2.2 4.8E-05 45.6 13.3 107 265-404 92-198 (513)
214 PRK15075 citrate-proton sympor 91.7 2.9 6.4E-05 43.5 13.3 90 304-407 87-176 (434)
215 PRK09528 lacY galactoside perm 91.1 0.22 4.7E-06 51.6 4.0 84 34-124 316-400 (420)
216 PF06609 TRI12: Fungal trichot 91.0 14 0.00031 40.3 17.7 111 264-408 80-190 (599)
217 KOG0569 Permease of the major 90.7 4.4 9.4E-05 43.1 13.2 58 347-404 115-172 (485)
218 PRK09669 putative symporter Ya 90.7 0.46 1E-05 49.7 6.1 74 32-106 318-392 (444)
219 PF11700 ATG22: Vacuole efflux 90.6 0.62 1.3E-05 49.6 6.9 86 33-125 380-466 (477)
220 KOG2563 Permease of the major 90.4 3 6.5E-05 43.6 11.2 97 355-463 366-462 (480)
221 KOG2615 Permease of the major 90.2 1.5 3.3E-05 44.8 8.8 102 274-409 80-181 (451)
222 PF05978 UNC-93: Ion channel r 90.2 8.2 0.00018 34.5 12.7 62 346-407 87-148 (156)
223 TIGR00806 rfc RFC reduced fola 90.0 30 0.00065 36.9 20.1 83 32-123 114-199 (511)
224 COG0738 FucP Fucose permease [ 89.9 17 0.00036 37.7 16.0 90 300-408 75-164 (422)
225 PF02487 CLN3: CLN3 protein; 89.8 5.5 0.00012 41.3 12.8 94 281-407 73-166 (402)
226 PRK10429 melibiose:sodium symp 89.8 5.1 0.00011 42.3 13.2 57 347-403 105-162 (473)
227 TIGR00939 2a57 Equilibrative N 89.8 4.1 8.8E-05 42.9 12.1 123 300-451 72-196 (437)
228 PTZ00207 hypothetical protein; 89.5 36 0.00079 37.3 24.5 83 32-124 119-203 (591)
229 PF13347 MFS_2: MFS/sugar tran 89.1 2.4 5.3E-05 44.0 9.9 116 275-406 42-162 (428)
230 PRK11462 putative transporter; 88.9 13 0.00028 39.2 15.4 57 348-404 109-166 (460)
231 TIGR00902 2A0127 phenyl propri 87.6 1.2 2.7E-05 45.4 6.5 84 32-124 292-376 (382)
232 PRK11128 putative 3-phenylprop 86.9 8.5 0.00018 39.1 12.2 60 347-408 93-152 (382)
233 PF03137 OATP: Organic Anion T 85.3 0.22 4.8E-06 53.8 -0.5 93 32-131 140-254 (539)
234 PF03092 BT1: BT1 family; Int 85.2 13 0.00028 39.0 12.6 57 351-408 89-148 (433)
235 PRK09848 glucuronide transport 85.0 1.6 3.4E-05 45.7 5.7 90 33-123 319-424 (448)
236 COG2807 CynX Cyanate permease 83.6 28 0.00061 35.6 13.4 85 300-408 74-158 (395)
237 KOG4686 Predicted sugar transp 83.4 49 0.0011 33.0 14.4 85 353-449 357-441 (459)
238 KOG2816 Predicted transporter 81.1 63 0.0014 34.3 15.8 46 363-408 127-172 (463)
239 PF03825 Nuc_H_symport: Nucleo 79.8 3.2 7E-05 43.0 5.6 83 38-126 306-394 (400)
240 KOG2325 Predicted transporter/ 79.1 8.6 0.00019 40.8 8.4 57 353-409 393-449 (488)
241 KOG0255 Synaptic vesicle trans 78.7 31 0.00066 36.8 12.9 86 346-450 169-254 (521)
242 COG2223 NarK Nitrate/nitrite t 77.2 35 0.00076 35.4 11.9 121 259-408 43-163 (417)
243 KOG2504 Monocarboxylate transp 75.8 2.5 5.5E-05 45.3 3.5 81 40-127 395-476 (509)
244 PF01891 CbiM: Cobalt uptake s 75.4 43 0.00093 31.2 11.3 98 270-379 107-204 (205)
245 PF06123 CreD: Inner membrane 73.9 47 0.001 34.8 12.1 46 308-372 300-345 (430)
246 PF00083 Sugar_tr: Sugar (and 73.5 0.091 2E-06 54.8 -8.1 61 347-407 101-161 (451)
247 COG2211 MelB Na+/melibiose sym 73.2 82 0.0018 33.4 13.8 102 346-459 110-212 (467)
248 PRK11715 inner membrane protei 71.5 50 0.0011 34.7 11.6 80 308-406 306-396 (436)
249 PF06679 DUF1180: Protein of u 71.3 7.1 0.00015 35.1 4.7 29 429-457 94-122 (163)
250 TIGR00788 fbt folate/biopterin 68.4 1.2E+02 0.0025 32.1 14.1 57 351-408 123-182 (468)
251 KOG4686 Predicted sugar transp 68.4 11 0.00024 37.3 5.6 82 34-122 353-437 (459)
252 KOG4255 Uncharacterized conser 65.3 1.6E+02 0.0035 29.8 17.2 99 347-455 112-215 (439)
253 PF01770 Folate_carrier: Reduc 64.4 1.9E+02 0.0041 30.2 14.7 62 346-408 92-153 (412)
254 PRK07331 cobalt transport prot 60.1 1.1E+02 0.0024 30.7 11.2 106 270-381 108-220 (322)
255 TIGR00769 AAA ADP/ATP carrier 59.3 2.5E+02 0.0053 29.9 21.2 50 359-408 136-189 (472)
256 COG3104 PTR2 Dipeptide/tripept 55.9 43 0.00093 35.6 7.7 120 303-458 92-213 (498)
257 PF11368 DUF3169: Protein of u 55.7 16 0.00035 35.2 4.4 12 395-406 17-28 (248)
258 PF01306 LacY_symp: LacY proto 55.5 1.2E+02 0.0026 31.7 10.9 24 265-288 46-69 (412)
259 PF14007 YtpI: YtpI-like prote 55.2 18 0.00039 29.1 3.7 69 60-135 18-86 (89)
260 PRK10921 twin-arginine protein 54.6 2.1E+02 0.0046 27.7 15.6 32 345-376 150-181 (258)
261 KOG1479 Nucleoside transporter 50.2 2.1E+02 0.0046 29.7 11.5 85 349-449 118-202 (406)
262 PF01102 Glycophorin_A: Glycop 49.2 20 0.00044 30.5 3.4 26 432-458 70-95 (122)
263 PF00558 Vpu: Vpu protein; In 48.5 22 0.00048 27.9 3.2 27 435-461 11-37 (81)
264 PF07857 DUF1632: CEO family ( 48.2 94 0.002 30.1 8.2 66 379-454 74-139 (254)
265 KOG0252 Inorganic phosphate tr 46.2 46 0.001 35.3 6.0 121 261-408 80-204 (538)
266 COG3202 ATP/ADP translocase [E 45.9 4.1E+02 0.0088 28.5 16.2 31 72-102 180-210 (509)
267 PF12606 RELT: Tumour necrosis 44.1 38 0.00083 24.1 3.5 18 445-462 18-35 (50)
268 KOG4026 Uncharacterized conser 43.6 2.8E+02 0.006 25.9 10.8 113 344-472 72-200 (207)
269 COG2270 Permeases of the major 43.3 32 0.00069 35.9 4.3 82 37-125 345-427 (438)
270 PF06027 DUF914: Eukaryotic pr 42.6 1.1E+02 0.0024 30.9 8.1 42 81-123 11-58 (334)
271 COG5058 LAG1 Protein transport 42.3 27 0.00059 34.7 3.5 31 424-454 333-363 (395)
272 KOG0637 Sucrose transporter an 42.2 1.4E+02 0.0029 31.8 8.7 166 220-405 32-200 (498)
273 PRK08319 cobalt transport prot 42.0 2.6E+02 0.0056 26.5 10.1 31 352-382 183-213 (224)
274 KOG3574 Acetyl-CoA transporter 41.8 49 0.0011 34.3 5.3 59 344-402 364-423 (510)
275 TIGR00769 AAA ADP/ATP carrier 41.2 4.7E+02 0.01 27.9 20.4 54 353-406 381-435 (472)
276 PF01733 Nucleoside_tran: Nucl 38.8 10 0.00022 37.7 0.0 81 356-452 5-85 (309)
277 PF03806 ABG_transport: AbgT p 36.5 3E+02 0.0064 29.5 10.3 33 429-461 201-233 (502)
278 PF06645 SPC12: Microsomal sig 36.3 59 0.0013 25.2 3.9 55 74-131 6-60 (76)
279 KOG2927 Membrane component of 35.8 74 0.0016 32.1 5.4 53 345-407 185-237 (372)
280 PF15069 FAM163: FAM163 family 34.3 48 0.001 29.0 3.3 15 437-451 17-31 (143)
281 KOG3574 Acetyl-CoA transporter 34.2 2.3E+02 0.005 29.6 8.6 39 275-317 80-118 (510)
282 PF15050 SCIMP: SCIMP protein 34.1 38 0.00083 28.5 2.6 32 430-461 6-42 (133)
283 COG0477 ProP Permeases of the 33.4 95 0.0021 28.7 5.8 78 33-116 94-174 (338)
284 KOG0252 Inorganic phosphate tr 33.2 78 0.0017 33.6 5.3 87 40-129 41-135 (538)
285 COG5336 Uncharacterized protei 32.4 3E+02 0.0065 23.0 8.4 28 377-404 35-62 (116)
286 PF05915 DUF872: Eukaryotic pr 31.7 2.3E+02 0.0049 23.9 7.0 68 380-461 40-107 (115)
287 COG1585 Membrane protein impli 31.3 3.6E+02 0.0077 23.6 8.7 20 346-366 4-23 (140)
288 TIGR00123 cbiM cobalamin biosy 31.1 4.5E+02 0.0098 24.7 10.4 99 270-381 110-212 (214)
289 PF00083 Sugar_tr: Sugar (and 30.9 10 0.00022 39.3 -1.5 67 49-122 365-431 (451)
290 COG0477 ProP Permeases of the 28.2 2.6E+02 0.0056 25.6 7.9 61 347-407 93-155 (338)
291 COG3202 ATP/ADP translocase [E 27.9 7.8E+02 0.017 26.4 17.3 54 356-409 152-209 (509)
292 PF13000 Acatn: Acetyl-coenzym 26.9 2.7E+02 0.0059 29.9 8.1 58 344-401 400-458 (544)
293 PF03219 TLC: TLC ATP/ADP tran 25.9 8.4E+02 0.018 26.1 18.2 292 71-457 175-490 (491)
294 PRK11909 cobalt transport prot 25.8 5.8E+02 0.013 24.3 10.1 35 347-381 182-217 (230)
295 PRK06265 cobalt transport prot 25.4 5.4E+02 0.012 23.7 10.9 69 304-382 128-198 (199)
296 PRK10929 putative mechanosensi 25.2 8.1E+02 0.018 29.2 12.2 25 217-241 778-802 (1109)
297 PF12270 Cyt_c_ox_IV: Cytochro 25.0 1.3E+02 0.0028 26.3 4.4 37 434-470 42-79 (137)
298 PF05631 DUF791: Protein of un 24.7 2.1E+02 0.0045 29.2 6.6 99 25-125 113-214 (354)
299 PF02487 CLN3: CLN3 protein; 24.1 8.3E+02 0.018 25.4 11.4 62 347-408 334-395 (402)
300 PF06963 FPN1: Ferroportin1 (F 24.1 8.5E+02 0.018 25.6 13.2 26 262-287 38-63 (432)
301 PF01034 Syndecan: Syndecan do 23.5 33 0.00072 25.6 0.5 20 449-468 29-48 (64)
302 COG0805 TatC Sec-independent p 23.3 6.9E+02 0.015 24.2 11.3 41 343-383 152-195 (255)
303 COG4452 CreD Inner membrane pr 22.8 6.9E+02 0.015 25.8 9.6 17 309-325 301-317 (443)
304 KOG2569 G protein-coupled seve 20.3 69 0.0015 32.8 2.1 44 431-474 387-432 (440)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-73 Score=607.08 Aligned_cols=448 Identities=39% Similarity=0.694 Sum_probs=401.5
Q ss_pred EeeehhhhcCCCCCCCc--ccCCCCCCCCCccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHH
Q 011918 2 VLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 79 (475)
Q Consensus 2 ~~~~~~~~~~~~~~~~c--~~~~~~c~~~~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~ 79 (475)
.+||+++.+|.++|++| ......|+.++..+...+|.+|.++++|+|+.|||+.++++|||++.+++++ .++.++||
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~~~~~fFn 197 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-KGIPSFFN 197 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-hCcccchh
Confidence 57899999999999998 3335589999999999999999999999999999999999999997776544 55679999
Q ss_pred HHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCC
Q 011918 80 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 159 (475)
Q Consensus 80 ~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~ 159 (475)
|+|+.+|+|++++.++..|+|++.||.++|+++++.|++++++|+.|++.|++++|.++|++.+.+|+++++++++.+.+
T Consensus 198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~ 277 (571)
T KOG1237|consen 198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS 277 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred CcccchhhccCCCcccccCCccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011918 160 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239 (475)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~ 239 (475)
.+. ..............+++.++++|+|+.+.+.+. .++...++|++|++++|||+|++++++|+|+..++||+++
T Consensus 278 ~~~-~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~ 353 (571)
T KOG1237|consen 278 LDP-EELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVY 353 (571)
T ss_pred Ccc-hhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHH
Confidence 432 111111112233445788999999988654332 3455678999999999999999999999999999999999
Q ss_pred cC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 011918 240 SQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMT 318 (475)
Q Consensus 240 ~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~ 318 (475)
.| .|.++.|+.+||++++++|++|+++++.+..+.+++++|+++++.+|+.+|.+++++++++++||++|++++.++|.
T Consensus 354 aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~ 433 (571)
T KOG1237|consen 354 AQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMA 433 (571)
T ss_pred HhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHH
Confidence 99 89999999999999984599999999999999999999999999999999999887889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHH
Q 011918 319 AWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANL 398 (475)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~ 398 (475)
+++++|.+|++.+... ....+++|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++
T Consensus 434 ~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 434 VAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876651 13457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCCCCC-CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 399 VASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 399 l~~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
++..++.++...+.+ ..+|++ +|+|++|+++|||+++.+..++.+.|+.++++|++++.++
T Consensus 509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999877633 448999 9999999999999999999999999999999999887653
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=440.99 Aligned_cols=366 Identities=16% Similarity=0.190 Sum_probs=286.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.....++++|++|++|+|++|||++++++|||+++|+ +||.+|++||+++|+|++++|++++++++++|||.+|+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~ 189 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG 189 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3467899999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecC--CCCCChhh------HHHHHHHHHhhC-CCCCCCcccchhhccCCCcccccCCcc
Q 011918 111 VPAVIMLLSALSFFLASPFYVKSK--ANTSLLPG------LTQVLVASFKNR-RTKLPTQATEEMYHHGKGSMRLMPSEN 181 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~~~~~~~~~--p~~spl~~------~~~v~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (475)
+++++|++++++|++++|++.+.. |+.+|++. ...++...++.- ..... .+ .
T Consensus 190 ~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~------------~ 250 (498)
T COG3104 190 LAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLN-------QN------------T 250 (498)
T ss_pred HHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHH-------HH------------H
Confidence 999999999999999998887653 44445432 111111111100 00000 00 0
Q ss_pred chh-hhh----hhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHH-HhcCC
Q 011918 182 LRF-LNK----ACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQA-SSMDR 254 (475)
Q Consensus 182 ~~~-ld~----a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~-~~~~~ 254 (475)
.++ +.. ....+-. ....|. +.+ ||+||+++++++++..++||++|+| +|++++|+ +++||
T Consensus 251 ~~~~~~~~~i~~~~~~~~---------~~~~~~---~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~ 317 (498)
T COG3104 251 FSGVLLVISILIAIIYFA---------EAFRSP---KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317 (498)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHhccC---ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 000 000 0000000 001111 223 8999999999999999999999999 88888888 56777
Q ss_pred CCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 255 HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE 334 (475)
Q Consensus 255 ~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~ 334 (475)
+.. |+++|++|+|++||++|++++|+++++|+|+.++. ++ |+++.|+++|+++++++++++.......
T Consensus 318 ~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~------- 385 (498)
T COG3104 318 QIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF------- 385 (498)
T ss_pred ccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 755 69999999999999999999999999999987764 33 9999999999999999999887765321
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCC
Q 011918 335 GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 414 (475)
Q Consensus 335 g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~ 414 (475)
| ++..++|+||++++|+++++||+|++|+|+|+++++||++++|++||.|+++.++|+.+++.+........
T Consensus 386 ~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~--- 457 (498)
T COG3104 386 G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD--- 457 (498)
T ss_pred c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc---
Confidence 1 11357999999999999999999999999999999999999999999999999999999998877422100
Q ss_pred CCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011918 415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 460 (475)
Q Consensus 415 ~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~ 460 (475)
+..+..+...+|+.++.++++..++++.++++.+|.-+.
T Consensus 458 -------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 458 -------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred -------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 011112345789999999999999999999988776543
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.6e-46 Score=405.78 Aligned_cols=361 Identities=21% Similarity=0.373 Sum_probs=303.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-------C
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------G 104 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-------g 104 (475)
+...++++|+++++|+|++|||++++++|||++++. ++++++|+||||++|+|+++++++++++++++ |
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 346688999999999999999999999999987654 57999999999999999999999999998554 7
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011918 105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF 184 (475)
Q Consensus 105 ~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
|+++|++++++|++++++|+.++|+|++.+|.++++.++.+++..+++++....+. ....+|
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------~~~~~~ 221 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------HWPLHW 221 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------ccchhH
Confidence 99999999999999999999999999888888999888889988888764322110 011467
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceec
Q 011918 185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIP 263 (475)
Q Consensus 185 ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip 263 (475)
+|+++... .++++||+|++++++++++..++||++++| .++++.|+.+||++++ ++++|
T Consensus 222 ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip 281 (654)
T TIGR00926 222 LDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQ 281 (654)
T ss_pred HHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecC
Confidence 78764321 246799999999999999999999999999 9999999999999886 89999
Q ss_pred CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 011918 264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA------------ 331 (475)
Q Consensus 264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~------------ 331 (475)
++++|++|++.++++.|++++.++|.++|++.+ +++++|+++|++++++++++++++|.++++..
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~ 358 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQ 358 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEE
Confidence 999999999999999999999999999887655 89999999999999999999999998764000
Q ss_pred -----------------------------h-------------h-------------------c-------------C--
Q 011918 332 -----------------------------I-------------N-------------------E-------------G-- 335 (475)
Q Consensus 332 -----------------------------~-------------~-------------------~-------------g-- 335 (475)
. . . +
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (654)
T TIGR00926 359 VLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKIS 438 (654)
T ss_pred EecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCce
Confidence 0 0 0 0
Q ss_pred --C------C----------------------------------------------------------------------
Q 011918 336 --I------S---------------------------------------------------------------------- 337 (475)
Q Consensus 336 --~------~---------------------------------------------------------------------- 337 (475)
+ .
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (654)
T TIGR00926 439 YVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRI 518 (654)
T ss_pred EEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccc
Confidence 0 0
Q ss_pred ------------------------CCc------------cccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 338 ------------------------DDL------------RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 338 ------------------------~~~------------~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
++. .+.+++|++||+|||+++++||++.+++++||.+++||++|
T Consensus 519 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~m 598 (654)
T TIGR00926 519 DNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNM 598 (654)
T ss_pred cccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHH
Confidence 000 01245899999999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y 454 (475)
|+..+++|.++.++|+.+...+...-... +...-|.+++.++++..++|..+++.|
T Consensus 599 ks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 599 KSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998776542111 134467889999999999999998766
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=5.1e-48 Score=395.92 Aligned_cols=337 Identities=31% Similarity=0.467 Sum_probs=238.0
Q ss_pred CccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccch
Q 011918 29 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 108 (475)
Q Consensus 29 ~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~ 108 (475)
++.+.+.+++||+++++|+|++|||++++++|||+++++ ++|+++|+||||++|+|+++++++++|+++++||+++
T Consensus 29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 345578999999999999999999999999999998854 5899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCccEeec-CCCCCChhh-HHHHHHHHHhhCCCCCCCcccchhhccCC--CcccccCCccchh
Q 011918 109 FGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LTQVLVASFKNRRTKLPTQATEEMYHHGK--GSMRLMPSENLRF 184 (475)
Q Consensus 109 F~i~~v~~~~~~ivf~~~~~~~~~~-~p~~spl~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 184 (475)
|++++++|++++++|+.++++|++. +|.++++.+ ...+...+.+++....+.+. ...+.... ...... .....
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 181 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIF--GIIVF 181 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCC--CCCCH
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhh--hhhhh
Confidence 9999999999999999999999988 788888888 44555555555444332111 11111000 000000 00000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCC-cccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCcee
Q 011918 185 LNKACMAKHPEQDLTPDGRASNPNS-LCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEI 262 (475)
Q Consensus 185 ld~a~~~~~~~~~~~~~g~~~~~~~-~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~i 262 (475)
.+ +.....+. ...|. .++++++++.|.+.+.++.+.+.++|+..+.| .+....|..++|+.+++.+++
T Consensus 182 ~~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (372)
T PF00854_consen 182 IR-AAVIFFPE---------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGI 251 (372)
T ss_dssp HH-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-----
T ss_pred cc-chhhhhhh---------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccc
Confidence 11 11111110 01111 14567889999999999999999999999999 777788889999888733999
Q ss_pred cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011918 263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 342 (475)
Q Consensus 263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (475)
|+++++++|++++++++|+++++++|++++ +++ +++++|+++|++++.+++++.+.+|.+|......+|
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------- 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------- 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence 999999999999999999999999999883 333 899999999999999999999999987765544433
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH
Q 011918 343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA 395 (475)
Q Consensus 343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i 395 (475)
+++.+|++|.|++++++|++++++|++.+++.||+++++.|||+|+...++
T Consensus 321 --~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 321 --KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp --T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred --CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 466799999999999999999999999999999999999999999887654
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.6e-42 Score=361.90 Aligned_cols=370 Identities=15% Similarity=0.126 Sum_probs=264.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
..+++++.++++|+|++|||.+++++|+|+++|+ +|+++|+++|+++|+|++++|++++++.+++||+.+|.+++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa 175 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA 175 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 3467788899999999999999999999988775 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccEeecCC-CCCChhh--HHHH-----HHHH-----HhhCCCCCCCcccchhhccCCCcccccCCc
Q 011918 114 VIMLLSALSFFLASPFYVKSKA-NTSLLPG--LTQV-----LVAS-----FKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180 (475)
Q Consensus 114 v~~~~~~ivf~~~~~~~~~~~p-~~spl~~--~~~v-----~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (475)
++|++++++++.++|++.+..+ +++|.+. ..+. .... .......... ....+... ....
T Consensus 176 igm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~--- 247 (493)
T PRK15462 176 VGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEW-SVYALIVA----TIIG--- 247 (493)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHH---
Confidence 9999999999998877754311 1233311 0000 0000 0000000000 00000000 0000
Q ss_pred cchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHH-HhcCCCCCC
Q 011918 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQA-SSMDRHVTP 258 (475)
Q Consensus 181 ~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~-~~~~~~~~~ 258 (475)
.-++ ... .. +....+|+||+..++++++..++||+.|+| ++++++.+ +++|++++
T Consensus 248 -~~~~--~~~-~~------------------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~- 304 (493)
T PRK15462 248 -LGVL--AKI-YR------------------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF- 304 (493)
T ss_pred -HHHH--HHH-HH------------------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-
Confidence 0000 000 00 011347899999999999999999999999 77666555 78999997
Q ss_pred CceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011918 259 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 338 (475)
Q Consensus 259 ~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 338 (475)
|+++|++|+|++||++|+++.|++.++|.++.+|. + +|+.+.|+++|++++++||+++.+..... ..
T Consensus 305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~----- 371 (493)
T PRK15462 305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARWS----AM----- 371 (493)
T ss_pred ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CC-----
Confidence 89999999999999999999999999886654332 2 38999999999999999999988765311 11
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHH-HHHHHHHHHHHHhhhhcccCCCCC
Q 011918 339 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNG 417 (475)
Q Consensus 339 ~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~-~ig~~l~~~l~~~~~~~~~~~~~~ 417 (475)
..++|++|++..|+++|+||++++|+|+++++++||++++|++||+|++.. ++|+.+++.+.+.....+. +
T Consensus 372 ----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~----~ 443 (493)
T PRK15462 372 ----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF----D 443 (493)
T ss_pred ----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----C
Confidence 125999999999999999999999999999999999999999999999965 8999999999888753210 0
Q ss_pred CCCCCCCcCcchhHHHHHHHHHHHHH--HHHHHHHhhhcCCCcCC
Q 011918 418 GWIPSNINKGHYDYYYWLLTALSMAN--FLYYLACCKAYGPFKGR 460 (475)
Q Consensus 418 ~w~~~~ln~~~~~~~f~~la~l~~~~--~~~~~~~~~~y~~~~~~ 460 (475)
+-...+-+...+..+|..++.++++. .+.+.-+.+.+|.|+|.
T Consensus 444 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 444 ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00000001123556788788766554 34444444555666554
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=4.6e-38 Score=332.94 Aligned_cols=365 Identities=11% Similarity=0.129 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHH
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 114 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v 114 (475)
.+++++.++++|+|++|||.+++++|+|+++++ +|++.|+++|+++|+|+++++.+++++.+++||+++|.++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 467899999999999999999999999987663 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccEeec--CCCCCChhh--HHHHH------HHHHhh-CCCCCCCcccchhhccCCCcccccCCccch
Q 011918 115 IMLLSALSFFLASPFYVKS--KANTSLLPG--LTQVL------VASFKN-RRTKLPTQATEEMYHHGKGSMRLMPSENLR 183 (475)
Q Consensus 115 ~~~~~~ivf~~~~~~~~~~--~p~~spl~~--~~~v~------~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
+++++++.++.+++++++. +|++++... ..... ...... .....+.. ..+... + .+ ....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~-~i---~~~~ 252 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN--LVLIVL---S-IV---VTII 252 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH---H-HH---HHHH
Confidence 9999999999888777653 333333311 11000 001000 00000000 000000 0 00 0000
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHH-hcCCCCCCCce
Q 011918 184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQAS-SMDRHVTPNFE 261 (475)
Q Consensus 184 ~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~-~~~~~~~~~~~ 261 (475)
++... ... +..++++.+..+++++..++||++|+| .+.+.+|.+ ++|++.. |++
T Consensus 253 f~~~~----------------------~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~ 308 (489)
T PRK10207 253 FFREA----------------------FKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFS 308 (489)
T ss_pred HHHHH----------------------hcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceE
Confidence 00000 001 234567777888889999999999999 787777776 5787765 899
Q ss_pred ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 011918 262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 341 (475)
Q Consensus 262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~ 341 (475)
+|++++|++||++++++.|+..+++ +.+++++.+ +++++|+++|+++++++++++++.+.... ..
T Consensus 309 i~~~~~~~~n~~~iii~~pl~~~l~-~rl~~r~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~-------- 373 (489)
T PRK10207 309 INPVSFQALNPFWVVVASPILAGIY-THLGSKGKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWFA---DA-------- 373 (489)
T ss_pred ECHHHHHhHhHHHHHHHHHHHHHHH-HHHhhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhc---CC--------
Confidence 9999999999999999999999854 444444333 89999999999999999988766542110 01
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011918 342 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 421 (475)
Q Consensus 342 ~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~ 421 (475)
..++|+||+++.|+++|+||++.+|+++|++++.||++++|++||+|+++.++|+.+|+.+++.+..... ..
T Consensus 374 -~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-----~~-- 445 (489)
T PRK10207 374 -QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-----IT-- 445 (489)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc--
Confidence 1247899999999999999999999999999999999999999999999999999999999987652210 00
Q ss_pred CCCc-CcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011918 422 SNIN-KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 460 (475)
Q Consensus 422 ~~ln-~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~ 460 (475)
|+.. ++.+..+|..+++.+++.+++++++.|+++|.-++
T Consensus 446 ~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~ 485 (489)
T PRK10207 446 DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT 485 (489)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0100 12356889999999999999999999999887433
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=1.9e-37 Score=327.58 Aligned_cols=360 Identities=14% Similarity=0.151 Sum_probs=266.8
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.+.+++++.++++|.|+++|+.+++++|+++++++ .+|+++|+++|+++|+|+++|+.+++++.+++||+++|.++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 45677889999999999999999999999987764 35889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccEeecCCCCCChhhH-----H--HHH----HHHHhhCCCCCCCcccchhhccCCCcccccCCcc
Q 011918 113 AVIMLLSALSFFLASPFYVKSKANTSLLPGL-----T--QVL----VASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 181 (475)
Q Consensus 113 ~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~-----~--~v~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (475)
++.+++++++++..++.+++.++++++.+.. . +++ ....+.......... ......
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--- 244 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI----------ANILLM--- 244 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHHHH---
Confidence 9999999999988888776655444433210 0 000 000000000000000 000000
Q ss_pred chhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHH-HHHHhcCCCCCCC
Q 011918 182 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLV-LQASSMDRHVTPN 259 (475)
Q Consensus 182 ~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~-~q~~~~~~~~~~~ 259 (475)
-...+..++... . ...+ +.++ +|+++..+++++++..++||++|+| .+++. +|.+++|++++ +
T Consensus 245 --~~~~~~~~~~~~------~-~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~ 309 (475)
T TIGR00924 245 --TVTLAVIIFFFR------L-AFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-G 309 (475)
T ss_pred --HHHHHHHHHHHH------H-HHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-c
Confidence 000000000000 0 0001 0122 3455667789999999999999999 66554 56678998886 8
Q ss_pred ceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 011918 260 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 339 (475)
Q Consensus 260 ~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~ 339 (475)
+++|+++++++|++++++++|++++++.++ +|++++ ++...||++|+++++++++.++++.. ...
T Consensus 310 ~~ip~~~~~~~n~~~iil~~p~~~~~~~~l-~~~~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~------- 374 (475)
T TIGR00924 310 MSVPVIWFQSLNPFWVVVGSPVLAMIWTRL-GRKGKD---PTTPLKFTLGMLFCGASFLTFAASIW----FAD------- 374 (475)
T ss_pred eEECHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcC-------
Confidence 999999999999999999999999865544 333333 78999999999999999999887632 111
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCC
Q 011918 340 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419 (475)
Q Consensus 340 ~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w 419 (475)
...++|+||++++|+++|+||++++|+++++++++||+++||+++|+|.+..++|+.+++.+........ +
T Consensus 375 --~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~- 445 (475)
T TIGR00924 375 --AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G- 445 (475)
T ss_pred --CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-
Confidence 1236899999999999999999999999999999999999999999999999999999999887654211 1
Q ss_pred CCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011918 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 457 (475)
Q Consensus 420 ~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~ 457 (475)
...+|..+++++++.++++++..|+++|.
T Consensus 446 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 446 ---------VTGVFGKIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578889999999999999999988764
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.8e-36 Score=321.93 Aligned_cols=367 Identities=12% Similarity=0.140 Sum_probs=269.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.+.+++++.++++|.|+++|+..++++++|+++++ +++++++++|+++|+|+++++.+++++.+++||+++|.++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~ 186 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALS 186 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 45677888999999999999999999999987653 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccEeec--CCCCCChhhH------HHHHHHHHh-hCCCCCCCcccchhhccCCCcccccCCccch
Q 011918 113 AVIMLLSALSFFLASPFYVKS--KANTSLLPGL------TQVLVASFK-NRRTKLPTQATEEMYHHGKGSMRLMPSENLR 183 (475)
Q Consensus 113 ~v~~~~~~ivf~~~~~~~~~~--~p~~spl~~~------~~v~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
++.++++++.+++.++.+++. +|+++|.... ..+...... ....+.+.......+.. ....
T Consensus 187 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 256 (500)
T PRK09584 187 VVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVV----------ALGI 256 (500)
T ss_pred HHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH----------HHHH
Confidence 999999999888876666543 2333333211 011111110 00000000000000000 0000
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHH-hcCCCCCCCce
Q 011918 184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQAS-SMDRHVTPNFE 261 (475)
Q Consensus 184 ~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~-~~~~~~~~~~~ 261 (475)
..+.... . + +.+.+|+++.+..+++++..++||++|.| .+.+..|+. ++|+++. |++
T Consensus 257 ~~~~~~~----------------~---~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~ 315 (500)
T PRK09584 257 VVIFGKE----------------A---F-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIA 315 (500)
T ss_pred HHHHHHH----------------H---h-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceE
Confidence 0000000 0 0 11235677777888899999999999999 888888874 5777776 899
Q ss_pred ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 011918 262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 341 (475)
Q Consensus 262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~ 341 (475)
+|++++|++|++++++++|++++++. |.+++ +++.+|+++|+++.+++++.+++.... . +
T Consensus 316 i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~---------~ 375 (500)
T PRK09584 316 VEPEQYQALNPFWIMIGSPILAAIYN----KMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----A---------N 375 (500)
T ss_pred ECHHHHHHHhHHHHHHHHHHHHHHHH----HhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----c---------C
Confidence 99999999999999999999998653 33333 578999999999999999998776421 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011918 342 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 421 (475)
Q Consensus 342 ~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~ 421 (475)
+...+|++|++++|+++|+||++++|+++++++++||+++||++||+|+++.++|+.+++.+.+.+..+.. ..
T Consensus 376 ~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-------~~ 448 (500)
T PRK09584 376 DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-------VT 448 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cc
Confidence 12369999999999999999999999999999999999999999999999999999999999876542110 00
Q ss_pred CCCc-CcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q 011918 422 SNIN-KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVG 462 (475)
Q Consensus 422 ~~ln-~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~ 462 (475)
+... .+.+..+|..+++++++..+++++.+++.+|..+++.
T Consensus 449 ~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 449 DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1101 1125678888999888888899999999988766554
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.32 E-value=7.9e-10 Score=114.79 Aligned_cols=299 Identities=12% Similarity=0.001 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.+.+++...+.+++.|...+...+.+.|.+++ +++.++..++++..++|..+++.+.+++.+..||++.|.+.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 45566666677788888888888888887754 24788889999999999999999999998888999999988
Q ss_pred HHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhcc
Q 011918 113 AVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK 192 (475)
Q Consensus 113 ~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~ 192 (475)
++..+++.+..+...+ .+|+... +. .+. + ...+..+
T Consensus 183 ~~~~~~~~~~~~~l~~----~~~~~~~--------------~~--~~~-~--------------------~~~~~~~--- 218 (417)
T PRK10489 183 AAGTFITLLPLLRLPA----LPPPPQP--------------RE--HPL-R--------------------SLLAGFR--- 218 (417)
T ss_pred HHHHHHHHHHHHhCCC----CCCCCcc--------------cc--cch-H--------------------HHHHHHH---
Confidence 8777766554432211 1111000 00 000 0 0000000
Q ss_pred CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCce-ecCCccchhh
Q 011918 193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFE-IPSGSFNIFA 271 (475)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~-ip~~~~~~~n 271 (475)
.+-..+.+..+ ++...+ +........+. ........+ .. .-.+++....
T Consensus 219 ----------------------~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~--p~~~~~~~g--~~~~~~g~~~~~~ 268 (417)
T PRK10489 219 ----------------------FLLASPVVGGI---ALLGGL-LTMASAVRVLY--PALADEVWQ--MGAAQIGLLYAAV 268 (417)
T ss_pred ----------------------HHHcChHHHHH---HHHHHH-HHHHHhHHHhh--HHHHHhccC--CChhHhHHHHHHH
Confidence 00000111111 111111 11111111111 111111111 10 0123334444
Q ss_pred HHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHH
Q 011918 272 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ 351 (475)
Q Consensus 272 ~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wl 351 (475)
.+..++..++..++ .++ .+..+-+..+.++.+++++..... -+.++.
T Consensus 269 ~~g~~ig~~~~~~l-----~~~------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~ 315 (417)
T PRK10489 269 PLGAALGALTSGWL-----AHS------ARPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILA 315 (417)
T ss_pred HHHHHHHHHHHHHh-----hhc------cCcchHHHHHHHHHHHHHHHHHcc----------------------chHHHH
Confidence 44444444443332 221 112233555666666555433221 133444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011918 352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 431 (475)
Q Consensus 352 i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 431 (475)
+...++.+++.....+....++.+.+|++.||..+|++.....+|..+|+.+...+.+.. + ...
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~~ 379 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PVA 379 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hhh
Confidence 566778888888888888889999999999999999999888889989888887665211 1 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 432 YYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 432 ~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
.++..+++.++..++.....+++++++.+|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 455566665555565556656666655554
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.17 E-value=2e-09 Score=111.47 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=165.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|.+.|...+.+.|.+++ ++|.++.++.+...++|..+++.+.+++. ..||+..|.+
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 456677888888999999999999999988754 35899999999999999999999999998 7899999998
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011918 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~ 191 (475)
.++..++..++.....+.. ++ ++.. .+. . ..+ +
T Consensus 170 ~~~~~~~~~i~~~~~~~~~---~~--~~~~----------------~~~-~-------------------~~~----~-- 202 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPAY---KL--STVR----------------TPV-R-------------------EGM----T-- 202 (400)
T ss_pred HHHHHHHHHHHHHHhCCcc---cc--cccc----------------hhh-H-------------------HHH----H--
Confidence 8877666654433322110 00 0000 000 0 000 0
Q ss_pred cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecCCccchhh
Q 011918 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFA 271 (475)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n 271 (475)
+-..+ ++++.+. +....++..+.|...+ ....+.... +...-.+++.+++
T Consensus 203 ----------------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~--~p~~~~~~~--~~~~~~g~l~~~~ 252 (400)
T PRK11646 203 ----------------------RVLRD-KRFVTYV---LTLTGYYMLAVQVMLM--LPIMVNDIA--GSPSAVKWMYAIE 252 (400)
T ss_pred ----------------------HHHcC-chHHHHH---HHHHHHHHHHHHHHHh--hhhhHHhhc--CCchHHHHHHHHH
Confidence 00001 1111111 1111222222221000 011111111 1001122333444
Q ss_pred HHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHH
Q 011918 272 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ 351 (475)
Q Consensus 272 ~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wl 351 (475)
.+..+.......+ +..|+ .+..+++..|+++.+++++..+... +.++.
T Consensus 253 ~~~~~~~~~~~~~----~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~ 300 (400)
T PRK11646 253 ACLSLTLLYPIAR----WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQL 300 (400)
T ss_pred HHHHHHHHHHHHH----HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHH
Confidence 4433322222222 12221 2333457777777777765444321 23334
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011918 352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 431 (475)
Q Consensus 352 i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 431 (475)
+...++.++++....|.....+.+.+|++.+|..+|+..+..++|..+|+.+...+.+... ..+ ....
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~----------~~~--~~~~ 368 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK----------ALN--QPEL 368 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh----------hcC--Ccch
Confidence 4455778899999999999999999999999999999999999999999988877653210 001 1234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011918 432 YYWLLTALSMANFLYYL 448 (475)
Q Consensus 432 ~f~~la~l~~~~~~~~~ 448 (475)
.|++.++++++..+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 369 PWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666666655544
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.11 E-value=2.3e-08 Score=102.87 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|.+-|...+++.|.++++ +|.+.++++..+.++|..+++.+.+.+.+.+||++.|.+
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG-------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh-------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 4556677777888888888899999999988652 478899999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..+..
T Consensus 169 ~~~~~~l~~~~~ 180 (390)
T PRK03545 169 IGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHH
Confidence 887766655443
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.11 E-value=2.7e-08 Score=100.63 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...+++.|.+++ ++|.+.++++..+.++|.++++.+.+++.++.+|++.|.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 567788888899999999999999999998864 3588999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..++..+..+
T Consensus 154 ~~~~~~~~~~~~~ 166 (399)
T TIGR00893 154 EGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHHhh
Confidence 8877666555543
No 13
>PRK10054 putative transporter; Provisional
Probab=99.08 E-value=1.2e-08 Score=105.51 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
+.++++..+++.+.+.+.|...+...|.+++ ++|.+++++.|...|+|..+++.+.+++.+ .||+..|.+.+
T Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 97 TLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 3344444555666677788888888888754 358899999999999999999999998874 79999999988
Q ss_pred HHHHHHHHHH
Q 011918 114 VIMLLSALSF 123 (475)
Q Consensus 114 v~~~~~~ivf 123 (475)
+..+++++..
T Consensus 169 ~~~~i~~i~~ 178 (395)
T PRK10054 169 ICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHH
Confidence 8777775443
No 14
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.06 E-value=4.6e-08 Score=100.53 Aligned_cols=280 Identities=10% Similarity=0.073 Sum_probs=161.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+.+.+..-|...++..+ ++ +++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~--------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ--------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH--------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 45666667667777777777877776543 21 2456678999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011918 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~ 191 (475)
.++..++.++.+.. .+. .+|+++. . +. +
T Consensus 164 ~~~~~~~~~~~~~~-~~~---~~~~~~~---------------~---~~-~----------------------------- 191 (382)
T TIGR00902 164 LTAGLAFMLIGFLI-KPT---IPPKDAI---------------P---ED-E----------------------------- 191 (382)
T ss_pred HHHHHHHHHHHHHc-CCC---CCCCccc---------------c---cc-c-----------------------------
Confidence 76554433333221 110 0111000 0 00 0
Q ss_pred cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchh
Q 011918 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIF 270 (475)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~ 270 (475)
...++ +..+.-..|++ ..+.+...+++..+.+ .+.....-. |.... . .-.+.+..+
T Consensus 192 -------------~~~~~--~~~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s-~--~~~g~l~~~ 248 (382)
T TIGR00902 192 -------------SQGDS--AFIALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS-A--SATGLLWGI 248 (382)
T ss_pred -------------cccch--hHHHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC-H--hHHHHHHHH
Confidence 00000 00000001222 2222333334444444 222211111 11111 0 011233344
Q ss_pred hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011918 271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 350 (475)
Q Consensus 271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w 350 (475)
+.+..++..++.+++ .+| .++.+-+.+|.++.++.+...+.. .+.++
T Consensus 249 ~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~ 295 (382)
T TIGR00902 249 GVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAI----------------------EAFPL 295 (382)
T ss_pred HHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHH
Confidence 444444444443332 233 344555777888888877665443 23455
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcch
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 429 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~ 429 (475)
++..-+++++...+..+..+.++.+. |++.++.++|++. ...++|..+++.+++.+.+. . +
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g-- 357 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G-- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c--
Confidence 55556999999999999999999998 9999999999986 56788888888888776521 1 1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011918 430 DYYYWLLTALSMANFLY 446 (475)
Q Consensus 430 ~~~f~~la~l~~~~~~~ 446 (475)
...|+..+++++++.++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 24577788877765443
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.04 E-value=3e-08 Score=99.68 Aligned_cols=86 Identities=20% Similarity=0.125 Sum_probs=74.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|...|...+++.|.++++ +|.+.++++..+.++|.++++.+.+++.+..||+..|.+
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5677888889999999999999999999988653 589999999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..+++.+..+
T Consensus 164 ~~~~~~~~~~~~~ 176 (365)
T TIGR00900 164 DAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655443
No 16
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.04 E-value=2.6e-08 Score=102.50 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.+. -|...+...+++++ ++|.....+++.+.++|.++++.+.+++.+..+|+..|.+
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPR-------NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 355666666777777554 47777778887743 2478888999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..++..+..+
T Consensus 178 ~~~~~~~~~~~~~ 190 (408)
T PRK09874 178 TASVLFLCFLVTL 190 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766655443
No 17
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.04 E-value=1.5e-08 Score=106.77 Aligned_cols=62 Identities=15% Similarity=-0.022 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+|+.+...+.
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 34556667788999998999999999999999999999999999999999999998877654
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.04 E-value=1.1e-07 Score=98.21 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.+.++..+.++|.|...|...+++.|.+++ ++|....++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 355677777888999999999999999998854 2588999999999999999999998888888999999998
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..++.
T Consensus 175 ~~~~~~~~~~~~ 186 (406)
T PRK11551 175 GGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHH
Confidence 877655554443
No 19
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.03 E-value=2e-07 Score=96.40 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.+.+++...+.+++.+...+...+.+.|.++++ ++.+..++.+...++|..+++.+.+++.++.||+..|.+.
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA-------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 456667777888888888888888898888653 3667778888888999999999999998889999999988
Q ss_pred HHHHHHHHHHH
Q 011918 113 AVIMLLSALSF 123 (475)
Q Consensus 113 ~v~~~~~~ivf 123 (475)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.01 E-value=5.5e-08 Score=96.89 Aligned_cols=258 Identities=18% Similarity=0.174 Sum_probs=173.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|...+...++..|.++++ +|...+++.+.+.++|..+++.+.+.+.++.+|+..|.+
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK-------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567788888999999999999999999998763 488899999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011918 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~ 191 (475)
.++..+++.+...... +.. ..
T Consensus 159 ~~~~~~~~~~~~~~~~-------------~~~----~~------------------------------------------ 179 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------RLL----LL------------------------------------------ 179 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HHH----HH------------------------------------------
Confidence 8888877776654331 000 00
Q ss_pred cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhc---C-chHHHHHHHhcCCCCCCCceecCCcc
Q 011918 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS---Q-SSFLVLQASSMDRHVTPNFEIPSGSF 267 (475)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~---Q-~s~~~~q~~~~~~~~~~~~~ip~~~~ 267 (475)
+.+....++..+. + ...+. .+.. +.. . ...+++
T Consensus 180 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~-~--~~~~~~ 216 (352)
T cd06174 180 ------------------------------------LALAFFLLSFGYYGLLTYLPLYL--QEVL--GLS-A--AEAGLL 216 (352)
T ss_pred ------------------------------------HHHHHHHHHhHHHHHHHHHHHHH--HHhc--CCC-H--HHHHHH
Confidence 0000000000000 0 01110 0100 110 0 112344
Q ss_pred chhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 268 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 268 ~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~-ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
.....+..++..++..++ .+|.+++ + -+.++.++.+++++..... -
T Consensus 217 ~~~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~----------------------~ 263 (352)
T cd06174 217 LSLFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALA----------------------P 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHh----------------------c
Confidence 555555555555655553 2333222 2 4667777777776655432 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 426 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 426 (475)
+.++.+..+++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.....+.. +
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~-------- 329 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G-------- 329 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C--------
Confidence 25667788999999999999999999999999999999999999999999999999887764210 1
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 011918 427 GHYDYYYWLLTALSMANFLYY 447 (475)
Q Consensus 427 ~~~~~~f~~la~l~~~~~~~~ 447 (475)
....|.+.+++.++..+.+
T Consensus 330 --~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 330 --YGGVFLILAALALLAALLL 348 (352)
T ss_pred --cchHHHHHHHHHHHHHHHh
Confidence 2345666666666665544
No 21
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.00 E-value=1.2e-07 Score=98.77 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh---hheeccCCccchh
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI---VYIQDNLGWKVGF 109 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~---~~l~~~~g~~~~F 109 (475)
.+.++++..+.++|.|...+...++++|.++++ +|.....+++.+.++|.++++.+. ..+.+..||++.|
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA-------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh-------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 457888889999999999999999999988653 478889999999999999999988 7777788999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011918 110 GVPAVIMLLSALSFF 124 (475)
Q Consensus 110 ~i~~v~~~~~~ivf~ 124 (475)
.+.++..++.++..+
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 200 GLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHHh
Confidence 997776666554443
No 22
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.00 E-value=2.3e-07 Score=95.47 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
...++++-.+.++|.|...+...+...|.++++ +|.+...++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL-------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh-------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 445666777888999999999999999988543 3677888999999999999999999988889999888776
Q ss_pred HHHHH
Q 011918 113 AVIML 117 (475)
Q Consensus 113 ~v~~~ 117 (475)
++..+
T Consensus 185 ~~~~~ 189 (399)
T PRK05122 185 MLLAL 189 (399)
T ss_pred HHHHH
Confidence 65443
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.99 E-value=1.5e-07 Score=100.68 Aligned_cols=266 Identities=15% Similarity=0.089 Sum_probs=158.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.+.+.+++...++++|.+++.|.-++++.+..+++ +..++.++.-...|+.-++||.++|.+-...|-...|+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~-------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE-------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999764 47888999999999999999999999887889899999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011918 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~ 190 (475)
+.+++.++++..+...++.. +++..|-.++.+-++ +..+++.
T Consensus 174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~-------------------------------~G~ryv~---- 215 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALR-------------------------------EGLRYVR---- 215 (524)
T ss_pred HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHH-------------------------------HHHHHHh----
Confidence 99999888766555443221 111111000000000 0001100
Q ss_pred ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHH-HHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecCCccch
Q 011918 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALI-KVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNI 269 (475)
Q Consensus 191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l-~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~~~~~~ 269 (475)
.. ...+.++ +...+.++...+|. .+-..+++ .++ ..+..+..
T Consensus 216 -----------------------~~-~~l~~~l~~~~~~~l~~~a~~a------LlPl~a~~---~l~----~~a~~yGl 258 (524)
T PF05977_consen 216 -----------------------SS-PPLRSVLLRSFLFNLFASAVWA------LLPLFARD---VLG----GGASGYGL 258 (524)
T ss_pred -----------------------cc-hHHHHHHHHHHHHHHhhhHHHH------hhhHHHHH---HhC----CcHHHHHH
Confidence 00 0111111 11111111111111 11111111 111 12222222
Q ss_pred hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHH
Q 011918 270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 349 (475)
Q Consensus 270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~ 349 (475)
+... .-..-+...++.+.++++ .+..+-+..+.++.+++++..++. -+.|
T Consensus 259 l~a~--~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~ 308 (524)
T PF05977_consen 259 LLAA--FGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS----------------------PSFW 308 (524)
T ss_pred HHHH--HHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHH
Confidence 2211 122233334444444432 333444666777777766655443 2445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 350 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 350 wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..++..++.|++-..........+-+.+|++++|..++++......+..+|..+.+.+.
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999888888999999999999999998766666666666655544
No 24
>PRK10504 putative transporter; Provisional
Probab=98.97 E-value=5.3e-07 Score=95.08 Aligned_cols=88 Identities=9% Similarity=0.086 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
..+.++++..+.++|.|.+.|...+.+.|.+++ +++.+.+.++....++|..+++.+.+++.+..||++.|.+
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 355677788899999999999999999988753 3577889999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 011918 112 PAVIMLLSALSFFLA 126 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~ 126 (475)
......++.+.....
T Consensus 170 ~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 170 NIPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHHHh
Confidence 877666665554443
No 25
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.96 E-value=2.3e-08 Score=100.21 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=77.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...+++.|.++++ +|...+++.+.+.++|..+++.+.+++.++.||++.|.+
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhh-------hhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 3457888889999999999999999999999873 389999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011918 112 PAVIMLLSALSFFL 125 (475)
Q Consensus 112 ~~v~~~~~~ivf~~ 125 (475)
.++..++..++...
T Consensus 157 ~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 157 SAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred ccchhhhhhhhHhh
Confidence 99998888775433
No 26
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.96 E-value=2.8e-07 Score=97.18 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGV 111 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~i 111 (475)
...+++.-.+.++|.|..-|.......+.+++ ++|..+..+++.+.++|..+++.+++++.+. .||+..|.+
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 34566677788999999999999999988864 3588999999999999999999999999888 499999999
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..+++
T Consensus 204 ~~~~~~~~~~~~ 215 (465)
T TIGR00894 204 FGIVGCAWSLLW 215 (465)
T ss_pred hhHHHHHHHHHH
Confidence 887665554443
No 27
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.96 E-value=1.5e-07 Score=96.63 Aligned_cols=259 Identities=8% Similarity=0.028 Sum_probs=145.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.+++...+.+++.+...|...++..+.. + +|.+.+.+.....++|..++|.+++++.+++||+..|.+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~--------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-K--------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH-h--------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4566666677788888889998888777642 1 245567777888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011918 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA 191 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~ 191 (475)
.++..++.++... ..+ +.+|+++. . .+. .
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~~~~~~---------------~--~~~-~----------------------------- 192 (382)
T PRK11128 164 LTAGVASMLLGQL-LRP---TIMPQGES---------------R--QQE-S----------------------------- 192 (382)
T ss_pred HHHHHHHHHHHHH-ccC---CCCCcccc---------------c--ccc-c-----------------------------
Confidence 7765555443322 211 11111100 0 000 0
Q ss_pred cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchh
Q 011918 192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIF 270 (475)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~ 270 (475)
+ . ...+ .+.-..|.+. .+.+...+.+..+.+ .+....... +.+.. - -..+.+..+
T Consensus 193 -~--------~--~~~~-----~~i~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~--~~g~s--~-~~~g~~~~~ 248 (382)
T PRK11128 193 -A--------G--WPAW-----KALLKEPTVW---RFLLCVSLLQGSHAAYYGFSAIYWQ--AAGYS--A-STIGYLWSL 248 (382)
T ss_pred -c--------c--cchH-----HHHHcChhHH---HHHHHHHHHHHHhHhHHHHHHHHHH--HCCCC--H-hHHHHHHHH
Confidence 0 0 0000 0000112222 222222222333322 121111111 11111 0 112344455
Q ss_pred hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011918 271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 350 (475)
Q Consensus 271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w 350 (475)
+.+..++...+..++ .+| .+..+.+.+++++.+++++..+.. -+.++
T Consensus 249 ~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~ 295 (382)
T PRK11128 249 GVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST----------------------TALPW 295 (382)
T ss_pred HHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh----------------------hhHHH
Confidence 555555554544443 233 233444667777777766544332 23555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVD 408 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~ 408 (475)
.++.-++.++++.+..+.....+.++.|.+ ++.++++.. +..++|..+|+.+.+...
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAARPGSE-VIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778999999999999999998886555 588899876 555677777777776654
No 28
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.91 E-value=1.2e-07 Score=111.10 Aligned_cols=287 Identities=11% Similarity=-0.024 Sum_probs=158.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.+.+.++++..+.++|.+++.|...+++.|.++++ ++..+.+++.++.++|.++|+.+++++.+..||+..|.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~-------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD-------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 35678888999999999999999999999999763 47889999999999999999999999988999998885
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011918 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~ 190 (475)
+.++..++++++.+.- ++.+++....+ .. . +......
T Consensus 179 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------~~--~--------------------~~~~~~~- 215 (1140)
T PRK06814 179 LLMGIAVLGWLASLFI----PKTGNAAPDLK----------------ID--R--------------------NIIRSTI- 215 (1140)
T ss_pred HHHHHHHHHHHHHhhC----CCCCCCCCCCe----------------ec--c--------------------chHHHHH-
Confidence 4444444333332221 11111100000 00 0 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccch
Q 011918 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNI 269 (475)
Q Consensus 191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~ 269 (475)
+.....++-..+..+.+....++.+... .+.+.....+ .++.+- .-.+++.+
T Consensus 216 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~-~~~g~~~~ 268 (1140)
T PRK06814 216 -----------------------TLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TLGGDE-NVATLFLA 268 (1140)
T ss_pred -----------------------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HcCCch-HHHHHHHH
Confidence 0000000000111122222223322222 1111111111 111000 01234455
Q ss_pred hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCccccccchH
Q 011918 270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG-ISDDLRAVVQMSA 348 (475)
Q Consensus 270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~vs~ 348 (475)
...+..++...+..++ .++. ...+.+.+|.++.+++.+.+++... +...... ...-..-....+.
T Consensus 269 ~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 334 (1140)
T PRK06814 269 VFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASS---SVPAEPAQLKSILVFLSKRHG 334 (1140)
T ss_pred HHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhccc---ccccccccccchhhhhccccc
Confidence 5555555555555543 1221 1122344555555544433332100 0000000 0000000011355
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 349 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 349 ~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
|++++.+++.|++..+..+...+++.+.+|++++|.++|++.+...+|..+++.+...+.
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999999999999999999999999999888877664
No 29
>PRK12382 putative transporter; Provisional
Probab=98.86 E-value=8.6e-07 Score=91.09 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
....++++-.+.++|.+..-|...+.+.|.++++ +|.++.+++..+.++|..+++.+.+++.+.+||+..+.+
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK-------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 4556777778888999988888888888887542 478889999999999999999999999888999877665
Q ss_pred HHHH
Q 011918 112 PAVI 115 (475)
Q Consensus 112 ~~v~ 115 (475)
..+.
T Consensus 184 ~~~~ 187 (392)
T PRK12382 184 TMVL 187 (392)
T ss_pred HHHH
Confidence 5443
No 30
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.86 E-value=8.7e-07 Score=89.91 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
+.+++.-.+.+.+.+..-|...++..+..++++ +.+.....+.+.+.++|..+++.+.+++.+..||++.|.+.+
T Consensus 88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 88 FLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 344444444555556666777777666553321 112223577888899999999999999988899999999988
Q ss_pred HHHHHHHHHHHh
Q 011918 114 VIMLLSALSFFL 125 (475)
Q Consensus 114 v~~~~~~ivf~~ 125 (475)
+..++..++.+.
T Consensus 163 ~~~~~~~~~~~~ 174 (375)
T TIGR00899 163 LAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHH
Confidence 877766655443
No 31
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.85 E-value=3.8e-07 Score=92.36 Aligned_cols=86 Identities=19% Similarity=0.044 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG------- 104 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g------- 104 (475)
+.+.++....+++++.+...+...+++.|.+++ ++|..+.++...+.++|.++++.+.+++....|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 344455555566778888889999999998854 258889999999999999999999988877777
Q ss_pred -ccchhHHHHHHHHHHHHHHH
Q 011918 105 -WKVGFGVPAVIMLLSALSFF 124 (475)
Q Consensus 105 -~~~~F~i~~v~~~~~~ivf~ 124 (475)
|+..|.+.++..+++.++.+
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999987777665544
No 32
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.82 E-value=2.1e-06 Score=91.51 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec-cCCccchh
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGF 109 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~-~~g~~~~F 109 (475)
.+.+.+++...+.+++.+...+...++..|.++++ +|.++..+.-.+.++|.++++.+..++.+ ..||+..|
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~-------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f 177 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE-------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY 177 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 34566777777888889999999999999998643 47788888899999999999999888887 57999999
Q ss_pred HHHHHHHHHHHHHH
Q 011918 110 GVPAVIMLLSALSF 123 (475)
Q Consensus 110 ~i~~v~~~~~~ivf 123 (475)
.+.++.+++..+..
T Consensus 178 ~i~a~l~ll~~l~~ 191 (491)
T PRK11010 178 WLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887766665443
No 33
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.82 E-value=3.2e-06 Score=86.02 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
..+.++++..+.++|.+...+...+++.|.+++ ++|.+.+.+++...++|..+++.+.+++.+..||+..|.+
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 355677778888999999999999999998864 3588999999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHHh
Q 011918 112 PAVIMLLSALSFFL 125 (475)
Q Consensus 112 ~~v~~~~~~ivf~~ 125 (475)
.++..++..+..+.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 165 LSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766665544
No 34
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.80 E-value=7.1e-07 Score=95.14 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++-.+.++|.|++.|...+.+.+.+.++ ++|.+++.++....++|..++|.+.+++.++.||++.|.+
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 4667788888999999999998888888877543 3689999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.....++.+++.+
T Consensus 167 ~~~~~~~~~~l~~ 179 (495)
T PRK14995 167 NVPIVLVVMGLTA 179 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555554433
No 35
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.79 E-value=2.7e-06 Score=86.67 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=71.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.+++...+.+++.+...+...++..|.+++ ++|.+.+++.+.+.++|..+++.+.+++.+..||+..|.+
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 345667777888999999999999999998754 2488999999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..++..+...
T Consensus 151 ~~~~~~~~~~~~~ 163 (377)
T PRK11102 151 LALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655443
No 36
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.78 E-value=9.7e-07 Score=93.10 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+...++++..+.++|.|...|...+++.|.+++ ++|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 456677888889999999999999999999864 3588899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.+...++.++..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (485)
T TIGR00711 162 NVPIGIIVVVVAF 174 (485)
T ss_pred hhHHHHHHHHHHH
Confidence 7766555554443
No 37
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.78 E-value=1.3e-06 Score=90.98 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=72.7
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
+..+..+..++..|+..++ .+|.++ .+-+.+|+++.+++++...+.. -
T Consensus 262 ~~~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~---------------------~ 309 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG---------------------S 309 (437)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc---------------------h
Confidence 3344444555555555443 344322 2345667766666665443321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD 409 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~ 409 (475)
+.++.+...++.+++.....+...++..+.+| ++.+|.++|++.+...+|..+++.+...+-+
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444566688889998888888888888765 6678999999999999999888888776543
No 38
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.77 E-value=1e-06 Score=93.41 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|+..+...+++.|.+++ ++|...+.+++.+.++|.++++.+.+++.+..||++.|.+
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 456677788888999999999999999998864 3578889999999999999999999999989999999987
Q ss_pred HHHHHH
Q 011918 112 PAVIML 117 (475)
Q Consensus 112 ~~v~~~ 117 (475)
.++..+
T Consensus 180 ~~~~~~ 185 (496)
T PRK03893 180 GILPII 185 (496)
T ss_pred HHHHHH
Confidence 554433
No 39
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.77 E-value=1.4e-06 Score=91.99 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCC
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLG 104 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g 104 (475)
...++++-.+.++|.|+.-|...++++|.++++ +|..+..++-.+..+|.++++.++..+. +..|
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH-------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 456677788999999999999999999999753 4777888888999999999876654432 4579
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 011918 105 WKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 105 ~~~~F~i~~v~~~~~~ivf 123 (475)
|++.|.+.++..++.++..
T Consensus 193 Wr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998877776665443
No 40
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5.9e-08 Score=99.19 Aligned_cols=88 Identities=14% Similarity=0.249 Sum_probs=75.7
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchh
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGF 109 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F 109 (475)
.+.+.+.+.-.++++|-..+-|-.+++++|.+++ ++|.+.|.||||+|++|+.+|..+.+++.+..+ |+++|
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af 191 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF 191 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE
Confidence 4567777788899999999999999999999976 369999999999999999999989899988777 99999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011918 110 GVPAVIMLLSALSFFL 125 (475)
Q Consensus 110 ~i~~v~~~~~~ivf~~ 125 (475)
.+.++.+++..++.++
T Consensus 192 ~~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 192 RGSAVLGVIVGLLVFL 207 (493)
T ss_pred EeehHHHHHHHHHHHh
Confidence 9888777766555433
No 41
>TIGR00895 2A0115 benzoate transport.
Probab=98.75 E-value=2.2e-06 Score=87.25 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...+++.|.+++ ++|...++++..+.++|..+++.+.+++.+..||+..|.+
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 355677888899999999999999999998854 2478899999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..++.
T Consensus 177 ~~~~~~~~~~~~ 188 (398)
T TIGR00895 177 GGIAPLLLLLLL 188 (398)
T ss_pred hhhHHHHHHHHH
Confidence 865544444443
No 42
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.74 E-value=1.3e-07 Score=103.40 Aligned_cols=252 Identities=8% Similarity=-0.100 Sum_probs=181.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccc----
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV---- 107 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~---- 107 (475)
+.+...+.+..++++.+|.+++.+++.++|.+..++ +++++.+++|||..+.+.+.+.+..........+..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 466677789999999999999999999999988775 777889999999999999987644444442223443
Q ss_pred ---hhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011918 108 ---GFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF 184 (475)
Q Consensus 108 ---~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
-++..++.+++.++.++.+...++..++.+.+...+.+++.......+. ++
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~--------------------------~~ 210 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK--------------------------RF 210 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH--------------------------hh
Confidence 2347888888999999999877777677665555556665444332110 00
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHH-HHHHHhcCCCCCCCce
Q 011918 185 LNKACMAKHPEQDLTPDGRASNPNSLC--TVEQVEELKALIKVIPIWSTGIMIAVTISQSSFL-VLQASSMDRHVTPNFE 261 (475)
Q Consensus 185 ld~a~~~~~~~~~~~~~g~~~~~~~~~--~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~-~~q~~~~~~~~~~~~~ 261 (475)
.. .. ......|..+ ...++++++...+++.++...+.+|+.+.|.... ..|..++++..+ .+.
T Consensus 211 ----~~-~~--------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~ 276 (654)
T TIGR00926 211 ----ST-RS--------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVG 276 (654)
T ss_pred ----cc-CC--------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccC
Confidence 00 00 0000112111 2233567899999999999999999988663332 133355776653 554
Q ss_pred ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011918 262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI 330 (475)
Q Consensus 262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~ 330 (475)
..+...+.++++-.++++|+...+-+|++++.+++ -.+++++.-+.+.+.++++.+++++..+...
T Consensus 277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999998654 6788999999999999999999998876654
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.74 E-value=2.2e-06 Score=89.69 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.+.+++...+.+++.|..-+...+.+.+.+++ ++|.....+++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34455555667788888888899999999864 35888999999999999999999999998899999999987
Q ss_pred HHHHHHHH
Q 011918 113 AVIMLLSA 120 (475)
Q Consensus 113 ~v~~~~~~ 120 (475)
++..++..
T Consensus 184 ~i~~~~~~ 191 (434)
T PRK11663 184 GIIAIVVG 191 (434)
T ss_pred HHHHHHHH
Confidence 76655443
No 44
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.71 E-value=3.3e-06 Score=87.08 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=50.0
Q ss_pred cccccchhhhhccCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHh
Q 011918 49 GIRSSSLAFGAEQLDKGDGTKSKGALQSYF-SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 49 ~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F-~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~ 125 (475)
..-|...++..|..++++ +....+ ++...+.++|..+++.+.+++.++.||+..|.+.++..++..+..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 121 TANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred hhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666443221 122233 58889999999999999999998999999999888766665554433
No 45
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.69 E-value=1.4e-05 Score=82.10 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
...++++..+.++|.|...+...++..|.+++ ++|.+..++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 44566667788888888888888999998864 35889999999999999999999988888889999999988
Q ss_pred HHHHHHHHHHH
Q 011918 113 AVIMLLSALSF 123 (475)
Q Consensus 113 ~v~~~~~~ivf 123 (475)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 77666655543
No 46
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.67 E-value=2.5e-06 Score=88.61 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++-.+.++|.|..-+...++..|.++++ +|.++.+++..+.++|.++++.+.+++.+.+||+..|.+
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH-------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh-------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 4567778888999999999999999999988653 478888999999999999999999999889999999998
Q ss_pred HHHHH
Q 011918 112 PAVIM 116 (475)
Q Consensus 112 ~~v~~ 116 (475)
..+..
T Consensus 178 ~~~~~ 182 (426)
T PRK12307 178 GLLPV 182 (426)
T ss_pred HHHHH
Confidence 65443
No 47
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.67 E-value=8.7e-06 Score=84.13 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=70.8
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.+.+.+++.-.+.+++.|...|...++..|.+++ ++|..+..+++.+.|+|..+++.+.+++.+..||+..|.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 3466777888899999999999999999998854 358889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011918 111 VPAVIMLLSA 120 (475)
Q Consensus 111 i~~v~~~~~~ 120 (475)
+.++..++.+
T Consensus 179 ~~~~l~~~~~ 188 (394)
T PRK10213 179 AAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHH
Confidence 8776555443
No 48
>TIGR00898 2A0119 cation transport protein.
Probab=98.66 E-value=9.1e-06 Score=86.51 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|+..+...+++.|.++++ +|.....++..+.++|.++++.+...+.+ |++.|.+
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK-------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 3456777778889999999999999999998653 46777788888999999999988766663 9999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..++..+..+
T Consensus 249 ~~i~~~~~~~~~~ 261 (505)
T TIGR00898 249 VSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666655543
No 49
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.66 E-value=1.3e-05 Score=84.65 Aligned_cols=303 Identities=8% Similarity=0.009 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe--ecc---------
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--QDN--------- 102 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l--~~~--------- 102 (475)
..+.+++.+.-++.....+...++++|+.+++++ +++.++.|+.+.+|+|+.+++.++++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 4556666677778888888999999999987652 457899999999999999999887764 111
Q ss_pred ----CCccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccC
Q 011918 103 ----LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMP 178 (475)
Q Consensus 103 ----~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (475)
.+++..|.++++.++++.++-.+.-|.+...+++..+. ..+.......
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~------------------------~~~~~~~~~~---- 241 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN------------------------SEAAPPSKHG---- 241 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh------------------------hhcccccccc----
Confidence 15678999999988888877665433221100000000 0000000000
Q ss_pred CccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCC-C
Q 011918 179 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRH-V 256 (475)
Q Consensus 179 ~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~-~ 256 (475)
....+-+.-+ .-++--|.+.+++..-++.=+=|..+-+ .|.++-|.-.-..+ -
T Consensus 242 -~~~~~~~i~~------------------------~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~ 296 (477)
T TIGR01301 242 -EEAFFGELFG------------------------AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ 296 (477)
T ss_pred -hhhhHHHHHH------------------------HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc
Confidence 0000000000 0001112233333333222223333334 56665543211100 0
Q ss_pred CC----CceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011918 257 TP----NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRM-GIGLLFSTASMTAWAIVEAARRSIA 331 (475)
Q Consensus 257 ~~----~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki-~~G~~l~~ls~~~~~~~~~~~~~~~ 331 (475)
.. +... ..+-..+|.+.-. ++..++-++.++.+ ..++. .++.++.++|+....++.....+..
T Consensus 297 ~~~y~~gvr~-G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~ 364 (477)
T TIGR01301 297 GAKYDDGVRA-GAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSR 364 (477)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 00 0000 0122223333322 33333333334432 11333 6888899999888776642100000
Q ss_pred hhcCCCCCccccccch-HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc--hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 332 INEGISDDLRAVVQMS-AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK--SMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 332 ~~~g~~~~~~~~~~vs-~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~--~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++. +..- ..+.. .++.+..+.++|++=......=++++++..|+ +-+|.+||+...+..+.-.+..+....+.
T Consensus 365 ~~~~~-~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 365 YYDGD-GESL-PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred ccccc-cccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 01122 36667788999999999999999999999995 55699999999999999988887666544
No 50
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.66 E-value=1.3e-06 Score=92.52 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHH
Q 011918 36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 115 (475)
Q Consensus 36 ~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~ 115 (475)
..+.+.+++++.+.......++..|+.+ +++ +......++.|.+.++|.++++.+.+++.+.+||+..|.+.++.
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l 197 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 3346788999999999999999999998 333 23556778999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 011918 116 MLLSALSF 123 (475)
Q Consensus 116 ~~~~~ivf 123 (475)
.++..+..
T Consensus 198 ~ll~~~~~ 205 (468)
T TIGR00788 198 LLLQLFVS 205 (468)
T ss_pred HHHHHHHH
Confidence 77774443
No 51
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.64 E-value=4.8e-06 Score=97.53 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN 102 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~ 102 (475)
.+.+++...+.+++.|.+-|...++++|.++++ +|..+++++..+.++|.++++.+++++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE-------NLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc-------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888899999999999999999998753 488899999999999999999999988755
No 52
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.64 E-value=1.6e-05 Score=82.19 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHH
Q 011918 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIM 116 (475)
Q Consensus 37 ~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~ 116 (475)
++...+.++|.|++.|...+++.|.+++ ++|.++.++.....++|..+||.+++++.+. .|...|.+.+...
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4455678999999999999999999975 3589999999999999999999999998764 4777777766655
Q ss_pred HHHHH
Q 011918 117 LLSAL 121 (475)
Q Consensus 117 ~~~~i 121 (475)
+++.+
T Consensus 164 ~~~~~ 168 (393)
T PRK11195 164 LLAAL 168 (393)
T ss_pred HHHHH
Confidence 54443
No 53
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.63 E-value=2.4e-06 Score=86.18 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...+...+.+++ +|.....++..+.++|+++++.+.+.+.+..||+..|.+
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 455667777788888888777777777776632 367888999999999998766566666667899999998
Q ss_pred HHHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSFF 124 (475)
Q Consensus 112 ~~v~~~~~~ivf~ 124 (475)
.++..++..+..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (377)
T TIGR00890 162 MGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666655443
No 54
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.62 E-value=1.8e-05 Score=81.39 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...++..|.+++ +++..+..++..+.++|..+++.+.+++.+..||+..|.+
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 355667777788888888777777888887754 2467788888899999999999999999888999999998
Q ss_pred HHHHHHHHHHH
Q 011918 112 PAVIMLLSALS 122 (475)
Q Consensus 112 ~~v~~~~~~iv 122 (475)
.++..++..+.
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK11652 168 LLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 77665544433
No 55
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.61 E-value=1.2e-05 Score=83.55 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+...++++..+.++|.|..-+...+...|.|+++ ++.+...++..+.++|..+++.+++++.+..||++.|.+
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT-------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4566777788888888876666667778887653 477889999999999999999999999888899999998
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..+++.+..
T Consensus 176 ~~~~~~i~~~~~ 187 (413)
T PRK15403 176 IAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHH
Confidence 887777665543
No 56
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.60 E-value=3.7e-05 Score=79.49 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~ 110 (475)
+.+.+++...+.++..+...|...++..|..+++ +|.++..+..++.++|.++++.+..++.+. .||+..|.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE-------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 4555555556677888889999999999987543 478888888999999999999888888765 59999999
Q ss_pred HHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALS 122 (475)
Q Consensus 111 i~~v~~~~~~iv 122 (475)
+.++..++..+.
T Consensus 166 i~a~~~l~~~l~ 177 (402)
T PRK11902 166 LMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHH
Confidence 988776665554
No 57
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.60 E-value=1.7e-05 Score=81.41 Aligned_cols=72 Identities=6% Similarity=-0.091 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
+.+.++++..+.++|.|.+.|...+...+.+++ ++|.+.+++++.+.|+|..+++.+.+++.+...+...+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 456777788888999999988887777777643 357889999999999999999999999876654444443
No 58
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.59 E-value=2.3e-05 Score=87.13 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------- 101 (475)
..+.++++..+.++|.|+..|...+++++.+++ ++|...+++...+..+|.++++.++..+..
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~ 326 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS 326 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence 356778888899999999999999999998864 357788888888889999988866544332
Q ss_pred ---cCCccchhHHHHHHHHHHHHHH
Q 011918 102 ---NLGWKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 102 ---~~g~~~~F~i~~v~~~~~~ivf 123 (475)
..+|++.|.+.++..++.++.+
T Consensus 327 ~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 327 AYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 2368888888777666655443
No 59
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.57 E-value=3.1e-06 Score=88.00 Aligned_cols=136 Identities=10% Similarity=0.102 Sum_probs=85.3
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
.+.+++.+...+..++..++ .+|.+. .+.+.++.++.+++++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l----~dr~g~-------~~~~~~~~~l~~~~~~l~~~~---------------------- 312 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFI----INRIGA-------KNALLLAGTIMAVRIIGSGFA---------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHhc----------------------
Confidence 44455555555555555443 344322 233566666666666554432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+...+.+.. +
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G------ 380 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G------ 380 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C------
Confidence 2356677778889998888888888999999999999987655 56667788888887776654211 1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHH
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLAC 450 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~ 450 (475)
....|..++++.++..++.+..
T Consensus 381 ----~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 381 ----FQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHH
Confidence 2345666677666555544443
No 60
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.57 E-value=2.5e-05 Score=80.15 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.+++.|...+...++..+.+++ ++|.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 456777888888999898888777777777644 2467788888999999999999999999888999999999
Q ss_pred HHHHHHHHHHH
Q 011918 112 PAVIMLLSALS 122 (475)
Q Consensus 112 ~~v~~~~~~iv 122 (475)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88766655543
No 61
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.57 E-value=1.1e-05 Score=84.35 Aligned_cols=306 Identities=12% Similarity=0.097 Sum_probs=170.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee----ccC---C
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----DNL---G 104 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~----~~~---g 104 (475)
+...+++...+..++...+.-+-.+++.|..++++ +|.+..++-.++.++|.++...+.+.+- +.. +
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~ 175 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG 175 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence 33445666667789999999999999999987654 4788888888888888876555555433 221 5
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011918 105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF 184 (475)
Q Consensus 105 ~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
|.+.+.+.++..++..++.....|. +++++..+ .+. .++
T Consensus 176 ~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~-------------------~~~---------------------~~~ 214 (428)
T PF13347_consen 176 YRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ-------------------EKK---------------------ISL 214 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeee-cccccccc-------------------ccc---------------------ccc
Confidence 7776666666666555555444332 00000000 000 000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHh-cCCCCCCCcee
Q 011918 185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASS-MDRHVTPNFEI 262 (475)
Q Consensus 185 ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~-~~~~~~~~~~i 262 (475)
.+..+. -.++ |.+. .+++...+.+....- .+...+...+ +..+ .
T Consensus 215 ~~~~~~------------------------~~~n-r~~~---~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~----- 260 (428)
T PF13347_consen 215 RDSLRS------------------------LFRN-RPFR---ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G----- 260 (428)
T ss_pred ccchhh------------------------hccc-chHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----
Confidence 000000 0001 1222 233333333333332 2222222222 2211 0
Q ss_pred cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011918 263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 342 (475)
Q Consensus 263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (475)
-.+.+..+..+..++..|+..++ .+|.+++ +-+..|.++.+++.+...++.
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~------------------ 311 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFLLLFFLG------------------ 311 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHHHHHHHH------------------
Confidence 11233334444455555655443 4554333 346678888888777666553
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCC
Q 011918 343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG 415 (475)
Q Consensus 343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~ 415 (475)
..+.++.++..++.+++-....+...++..+..+ ++..|.++|++.+..-+|..+++.+...+-...
T Consensus 312 --~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~---- 385 (428)
T PF13347_consen 312 --PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV---- 385 (428)
T ss_pred --hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh----
Confidence 1467788888899999999888888888888776 456799999999999999999988777654332
Q ss_pred CCCCCCC--CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011918 416 NGGWIPS--NINKGHYDYYYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 416 ~~~w~~~--~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
++-++ +.++.........++.+..+..++-.++.++|+
T Consensus 386 --Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 386 --GYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred --CcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22111 122222334444455555444444445556654
No 62
>PRK11043 putative transporter; Provisional
Probab=98.56 E-value=2.2e-05 Score=80.89 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.+...+...++..|.++++ ++.+.++......++|..+++.+.+++.+.+||+..|.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ-------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3456667777888888888888888888888642 467788888889999999999999999989999999998
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..+..
T Consensus 166 ~~~~~~~~~~~~ 177 (401)
T PRK11043 166 LFAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHHH
Confidence 877766665543
No 63
>PRK09848 glucuronide transporter; Provisional
Probab=98.55 E-value=1.2e-05 Score=84.49 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch-
Q 011918 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS- 380 (475)
Q Consensus 302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~- 380 (475)
..+-+.+|+++.+++.+...+.. ..+.++.+...++.++|+.+..+...++..+.+|++
T Consensus 293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 293 KKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34556778777777765443210 134555666778899999999999999999988764
Q ss_pred ------hhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 381 ------MSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 381 ------~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..|.++|++.+...+|..+|+.+...+-
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999888776543
No 64
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.53 E-value=8.3e-06 Score=86.53 Aligned_cols=83 Identities=8% Similarity=0.079 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee----c-----cC
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----D-----NL 103 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~----~-----~~ 103 (475)
.+.++++..+.++|.+..-+ ....+++.++++ +|..+..+.+...|+|+.+++.+.+.+. + ..
T Consensus 124 ~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~-------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK-------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh-------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 44555666677777776543 445677777542 4777888888888888888766655442 1 25
Q ss_pred CccchhHHHHHHHHHHHHHH
Q 011918 104 GWKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 104 g~~~~F~i~~v~~~~~~ivf 123 (475)
||+..|.+.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999999887666554443
No 65
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.52 E-value=2.6e-05 Score=82.08 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccCCccchhHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~-~ia~~~~~~l~~~~g~~~~F~i 111 (475)
.+.+++...+.+++.|...|.......+.+++ ++|..+.++++.+.++|. ++++++...+....||+.+|.+
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 45566667788888998888888888888754 247889999999999986 5566543333334599999998
Q ss_pred HHHHHHHHHHH
Q 011918 112 PAVIMLLSALS 122 (475)
Q Consensus 112 ~~v~~~~~~iv 122 (475)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 87766664443
No 66
>PRK03699 putative transporter; Provisional
Probab=98.51 E-value=5.2e-05 Score=78.13 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe-eccCCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI-QDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l-~~~~g~~~~F~ 110 (475)
+.+.++++..+.+++.|...+...+.+.+.++++ +|.......+...++|+.+++.+.+++ .++.||+..|.
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK-------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3456777778889999999999999999988542 366777778888899999999888776 45679999999
Q ss_pred HHHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALSF 123 (475)
Q Consensus 111 i~~v~~~~~~ivf 123 (475)
+.++..++..+..
T Consensus 167 ~~~~~~~~~~~~~ 179 (394)
T PRK03699 167 CIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666555443
No 67
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.51 E-value=7.4e-06 Score=83.08 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK 106 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~ 106 (475)
.++++..+.++|.|..-+...+++.|.++++ +|.....++..+.++|.++++.+...+. +..+|+
T Consensus 98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPG-------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHhhccccccccHHHhhhcCCcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 4666777888999999999999999987643 4778889999999999999987766543 357899
Q ss_pred chhHHHHHHHHHHHHH
Q 011918 107 VGFGVPAVIMLLSALS 122 (475)
Q Consensus 107 ~~F~i~~v~~~~~~iv 122 (475)
+.|.+.++..+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877766555443
No 68
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.51 E-value=4.3e-05 Score=78.35 Aligned_cols=83 Identities=16% Similarity=0.009 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+...++++-.+.++|.|.. ++..+..++.+++ ++|.+..+++..+.++|..+++.+.+++.+..||+..|.+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4567788888889999865 4555555777753 3589999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 011918 112 PAVIMLLSALS 122 (475)
Q Consensus 112 ~~v~~~~~~iv 122 (475)
.++.-++..++
T Consensus 150 ~~~l~~~~~~~ 160 (368)
T TIGR00903 150 IAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 69
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.50 E-value=3e-05 Score=80.03 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-CccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-g~~~~F~ 110 (475)
+...++++-.+.++|.|..-+...+.+.+.++ + +|.....++..+.++|..+++.+.+++.++. +|+..|.
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34567778889999999999999999888874 1 3678888888999999999999999887775 8988776
Q ss_pred HHHHHHHHHHH
Q 011918 111 VPAVIMLLSAL 121 (475)
Q Consensus 111 i~~v~~~~~~i 121 (475)
+-++..++.+.
T Consensus 168 ~~~~~~~~~~~ 178 (393)
T PRK09705 168 WWALPAVVALF 178 (393)
T ss_pred HHHHHHHHHHH
Confidence 55444444333
No 70
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.50 E-value=1e-05 Score=82.61 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC--ccchh
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGF 109 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g--~~~~F 109 (475)
+.+.++++..+.++|.|...+...++..|.++++ +|..+..++..+.++|..+++.+.+.+.+..+ |+..|
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH-------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 4566777888999999999999999999988653 47889999999999999999999888877666 99999
Q ss_pred HHHHHHHHHHHH
Q 011918 110 GVPAVIMLLSAL 121 (475)
Q Consensus 110 ~i~~v~~~~~~i 121 (475)
.+.++..++.++
T Consensus 172 ~~~~~~~~~~~~ 183 (405)
T TIGR00891 172 FISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHHH
Confidence 887665555443
No 71
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.40 E-value=1.4e-05 Score=84.37 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhHHHH
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPA 113 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~i~~ 113 (475)
.+.+.-.+-+++.|...|++..+.++-.+++ +|..+.++.|-+..+|.+++.-+.+++-+. .||+..|.+-+
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~-------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPN-------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 4456667888899999999999988877653 489999999999999999998899999888 99999999877
Q ss_pred HHHHHHHHHHHh
Q 011918 114 VIMLLSALSFFL 125 (475)
Q Consensus 114 v~~~~~~ivf~~ 125 (475)
+.-++-.++++.
T Consensus 203 ~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 203 IVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHH
Confidence 665555555443
No 72
>PRK09669 putative symporter YagG; Provisional
Probab=98.40 E-value=4.7e-05 Score=79.85 Aligned_cols=61 Identities=3% Similarity=0.010 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.++++...++.++++....+...+++.+.++ ++..|.+.|++.+...+|..+|+.+...+-
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566688999999999999999998876 456788999998888888888887776654
No 73
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.40 E-value=1.2e-05 Score=81.13 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh-hhhhheeccCCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~-~~~~~l~~~~g~~~~F~ 110 (475)
+.+.++++..+.+++.|...|...++..|.++++ +|..++++...+.++|..+++ ++.+.+.+..+|+..|.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS-------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh-------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 4567778888889999999999999999998653 477888899999999999999 56777777889999999
Q ss_pred HHHHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALSFF 124 (475)
Q Consensus 111 i~~v~~~~~~ivf~ 124 (475)
+.++..++..++.+
T Consensus 155 ~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 155 VPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 88876666554444
No 74
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.39 E-value=0.00022 Score=75.85 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK 106 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~ 106 (475)
.+.++-.+.++|.|+.-|...++++|.++++ +|.....+...+.++|..++..+...+. .++||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR-------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 3666777889999999999999999998654 3555677778888888888765544332 268999
Q ss_pred chhHHHHHHHH
Q 011918 107 VGFGVPAVIML 117 (475)
Q Consensus 107 ~~F~i~~v~~~ 117 (475)
+.|.+.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998665433
No 75
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.37 E-value=0.00012 Score=76.58 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCc
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGW 105 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~ 105 (475)
..+.+.-.+.++|.|+.-|...++++|.++++ +|..+.++.+.+.+.|.++++.+...+. ..+||
T Consensus 125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~-------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEG-------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 35667777899999999999999999988653 3667788899999999999887655443 26799
Q ss_pred cchhHHHHHHHHHH
Q 011918 106 KVGFGVPAVIMLLS 119 (475)
Q Consensus 106 ~~~F~i~~v~~~~~ 119 (475)
+..|.+.++..++.
T Consensus 198 r~~F~i~~~~~ll~ 211 (432)
T PRK10406 198 RIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999877655443
No 76
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00034 Score=71.65 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=76.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.+...+.++=.+.++..|.|-+-..+..++..+++ ||.++..+.+.+..+.-.+|.=++.++++.+||+..|.
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~-------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG-------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 35677888889999999999999999999999764 58999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 011918 111 VPAVIMLLSALSFFLA 126 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~ 126 (475)
+-++.-++.++..+..
T Consensus 172 ~ia~l~ll~~~~~~~~ 187 (394)
T COG2814 172 AIAVLALLALLLLWKL 187 (394)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8777666666555444
No 77
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.35 E-value=6.2e-05 Score=79.79 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.++++...++.+++.....+...++..+.++ ++..|.+.|.+.+..-+|..+++.+...+-
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566688899999999999999999977 556777999999988888888877766554
No 78
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.33 E-value=0.00011 Score=73.56 Aligned_cols=87 Identities=10% Similarity=-0.056 Sum_probs=68.1
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc--------
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------- 102 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-------- 102 (475)
.+.+.+.+++.+++.|.+..++..++++++.-+++ ++.+..|+.-.+..+|++++|++.+.+..+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE-------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 46788999999999999999999999999987553 367778888888999999999998865521
Q ss_pred --------CCccchhHHHHHHHHHHHHHHH
Q 011918 103 --------LGWKVGFGVPAVIMLLSALSFF 124 (475)
Q Consensus 103 --------~g~~~~F~i~~v~~~~~~ivf~ 124 (475)
.+|++.|.+-++..++..+++.
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~ 110 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIFA 110 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999955544444444443
No 79
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.32 E-value=0.00016 Score=75.47 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011918 349 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 427 (475)
Q Consensus 349 ~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 427 (475)
+.++...++.++++.+..+....++.+.+|++.||.++|+.. ...++|..+|+.+.....+... +.+-.
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----------~~~~~ 378 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----------AYGTF 378 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----------cccCC
Confidence 334556789999999999999999999999999999999996 5678899998888876542210 00000
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 428 HYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 428 ~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
..+.-|.+.+++.++..++++++.|
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1334566666666666655555554
No 80
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.30 E-value=6.7e-05 Score=77.28 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.+++++..++.+++.........+.+.+..|++.+++..+. +.....+|+.+++.+.....
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~ 368 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY 368 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence 566677778889988877777777888888899998886665 55667888888877766654
No 81
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.25 E-value=0.00014 Score=73.54 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC--Cccchh
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GWKVGF 109 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~--g~~~~F 109 (475)
+.+.++++..+.++|.|...+...+...|.+++ +|.+..++++.+.++|..+++.+.+.+.+.. +|+..|
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 345666777888899998888888888776632 3778899999999999999998888887664 388888
Q ss_pred HHHHHHHHHHH
Q 011918 110 GVPAVIMLLSA 120 (475)
Q Consensus 110 ~i~~v~~~~~~ 120 (475)
.+.++..++.+
T Consensus 158 ~~~~~~~~~~~ 168 (355)
T TIGR00896 158 AWWALPALLAL 168 (355)
T ss_pred HHHHHHHHHHH
Confidence 87665544443
No 82
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.23 E-value=9e-05 Score=77.61 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-eeccCCccchhHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY-IQDNLGWKVGFGV 111 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~-l~~~~g~~~~F~i 111 (475)
...+++...+.+++.|..-+.....+.|.++++ +|..++++++.+.++|..+++.+.+. +....+|+.+|.+
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS-------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc-------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566677788888888888888889887653 47899999999999999998877664 4445799999999
Q ss_pred HHHHHHHHHHHH
Q 011918 112 PAVIMLLSALSF 123 (475)
Q Consensus 112 ~~v~~~~~~ivf 123 (475)
.++..++..++.
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 887766655443
No 83
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.23 E-value=0.00064 Score=70.25 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccCCccchhHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~-~ia~~~~~~l~~~~g~~~~F~i 111 (475)
...+++...+.++|.+..-+...+.+.+.+++ ++|.++..++..+.++|. .+++.+.+++.+..||...+..
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 44555566666777777766677777776654 358999999999999996 6788888888888886544443
Q ss_pred H
Q 011918 112 P 112 (475)
Q Consensus 112 ~ 112 (475)
.
T Consensus 178 ~ 178 (402)
T TIGR00897 178 A 178 (402)
T ss_pred H
Confidence 3
No 84
>PRK09952 shikimate transporter; Provisional
Probab=98.21 E-value=0.00054 Score=71.84 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK 106 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~ 106 (475)
.+.+.-.+.++|.|+.-|...++..+.++++ +|....+....+.++|.+++..+..++. +.+||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN-------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 4556667889999999999999999987653 3566677788888999888876655543 357999
Q ss_pred chhHHHHHHHHH
Q 011918 107 VGFGVPAVIMLL 118 (475)
Q Consensus 107 ~~F~i~~v~~~~ 118 (475)
..|.+.++..++
T Consensus 200 ~~f~~~~~~~l~ 211 (438)
T PRK09952 200 IPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999988765443
No 85
>PRK15075 citrate-proton symporter; Provisional
Probab=98.18 E-value=0.00037 Score=72.86 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe--------eccCCcc
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDNLGWK 106 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l--------~~~~g~~ 106 (475)
.+.++-.+.++|.|..-|+..++.+|.++++ +|.+...++..+.|+|..+++.+.+.+ .+..||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr 191 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG-------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR 191 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence 3566677888999999999999999998653 477777887777777777766655544 2478999
Q ss_pred chhHHHHH
Q 011918 107 VGFGVPAV 114 (475)
Q Consensus 107 ~~F~i~~v 114 (475)
..|.+..+
T Consensus 192 ~~f~~~~~ 199 (434)
T PRK15075 192 IPFLIGCL 199 (434)
T ss_pred HHHHHHHH
Confidence 99987543
No 86
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.18 E-value=0.00062 Score=69.93 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHh
Q 011918 74 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 74 ~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~ 125 (475)
+..+-....++..+|.+++..+.+++.+++||+..|.+.++..++..+..+.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677779999999988889999999999999998887766655443
No 87
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.17 E-value=0.00018 Score=76.10 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC---Cccch
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKVG 108 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~---g~~~~ 108 (475)
..+.+++...+.++|.|..-|...+.+++.++++ +|..+..++-.+.++|..+++.+..++.+.. +|+..
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR-------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc-------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 4666777777888999999999999999999764 3677788888999999999988877665442 58888
Q ss_pred hHHHHHHHHHHHHH
Q 011918 109 FGVPAVIMLLSALS 122 (475)
Q Consensus 109 F~i~~v~~~~~~iv 122 (475)
|.+.++..++..++
T Consensus 194 f~~~g~~~~~~~i~ 207 (467)
T PRK09556 194 FIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 88876655544333
No 88
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.11 E-value=0.0016 Score=69.46 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec-----------
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------- 101 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~----------- 101 (475)
...++++..+.++|.|+.-|....++.+.++++ .|.++.++++.+.++|.++++.+...+..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK-------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 467888999999999999999999999998763 47888999999999999988877654311
Q ss_pred ------------cCCccchhHHHHHHHHHHHH
Q 011918 102 ------------NLGWKVGFGVPAVIMLLSAL 121 (475)
Q Consensus 102 ------------~~g~~~~F~i~~v~~~~~~i 121 (475)
..+|++.|.+.++..++..+
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999877766555443
No 89
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.07 E-value=0.0035 Score=64.14 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 410 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~ 410 (475)
+.+.+.+..+++|+|--+.....++..-++++++..|+.||+|..+.+++..++..++....+.
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999988888877777766544
No 90
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00026 Score=72.28 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh--hheeccCCccchh
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI--VYIQDNLGWKVGF 109 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~--~~l~~~~g~~~~F 109 (475)
..+.+.+-+.+-+.-.|.=-|.....++.-|+.+ +|.+..++.-.+-|+|+.+.+.++ +++..+++|+.+|
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~-------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK-------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc-------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 3445555555666666666778888888888654 378888999999999999999999 8999899999999
Q ss_pred HHHHHH-HHHHHHHHHhcCc
Q 011918 110 GVPAVI-MLLSALSFFLASP 128 (475)
Q Consensus 110 ~i~~v~-~~~~~ivf~~~~~ 128 (475)
.+|++. ++++++.+..+|.
T Consensus 189 ~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 189 YFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 999865 5556655655553
No 91
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.01 E-value=0.0016 Score=67.69 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec------cCCcc
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD------NLGWK 106 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~------~~g~~ 106 (475)
...++++-.+.++|.|..-|...++..+.+++ ++|.....++..+.++|..+++.+.+++.+ ..||+
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 45677788899999999999888888988864 357888999999999999999999887753 46999
Q ss_pred chhHHHHHHHHHHHHHH
Q 011918 107 VGFGVPAVIMLLSALSF 123 (475)
Q Consensus 107 ~~F~i~~v~~~~~~ivf 123 (475)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999777665544433
No 92
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.92 E-value=6.2e-06 Score=84.63 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=107.5
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
.+|..-.+.-+++.|+...+- .| .+..+-|++|.++=.++.+..++.
T Consensus 72 ll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs---------------------- 118 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS---------------------- 118 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence 445444445556668777742 33 233455888988888877655543
Q ss_pred chHHHH-HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCC-CCCCC
Q 011918 346 MSAMWQ-LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG-WIPSN 423 (475)
Q Consensus 346 vs~~wl-i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~-w~~~~ 423 (475)
+-+|| ++.=-+.|+||...+|..-+++++..|+..||+++|+|+++.-+|+.+|...+..+...+ . |
T Consensus 119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------~~W---- 187 (493)
T KOG1330|consen 119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------FWW---- 187 (493)
T ss_pred -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------cce----
Confidence 34565 467789999999999999999999999999999999999999999999887776665332 2 3
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCCCcc
Q 011918 424 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGME 472 (475)
Q Consensus 424 ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 472 (475)
.+-|++-++++++.+++..++.+-=+|. ..++.+.+++++++
T Consensus 188 ------r~af~~~avl~vi~~~L~~~f~~eP~rg-a~~~~~~~~~~~~~ 229 (493)
T KOG1330|consen 188 ------RWAFRGSAVLGVIVGLLVFLFVREPERG-ARDEVDGENKMVKP 229 (493)
T ss_pred ------EEEEEeehHHHHHHHHHHHhhccCcccc-cccccccCCcCCCC
Confidence 2235677788877777666555533332 33344445544443
No 93
>PRK11462 putative transporter; Provisional
Probab=97.85 E-value=0.0014 Score=69.20 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-------CCccch
Q 011918 36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------LGWKVG 108 (475)
Q Consensus 36 ~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-------~g~~~~ 108 (475)
+++...+..++.-++.-.-.++.++.-+|. ++|.+..++.-.+.++|.++++++...+.+. .||...
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~------~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDP------TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 344444556777777778888888877654 3589999999999999988886664432222 245555
Q ss_pred hHHHHHHHHHHHHH
Q 011918 109 FGVPAVIMLLSALS 122 (475)
Q Consensus 109 F~i~~v~~~~~~iv 122 (475)
..+-++..++...+
T Consensus 186 ~~i~~ii~~i~~~i 199 (460)
T PRK11462 186 IAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 55444444444433
No 94
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0053 Score=65.28 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee------ccCCc
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------DNLGW 105 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~------~~~g~ 105 (475)
..+.+.+--.++++-.+..-|+....++.-|+++ +|..-+.++|.+.++|..+|.++...+. ...||
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~-------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS-------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh-------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 4555666677889999999999999999999875 3677788899999999999998888763 35799
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 011918 106 KVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 106 ~~~F~i~~v~~~~~~ivf~~ 125 (475)
++.|++.++.+++..++.++
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred eeehhHHHHHHHHHHheEEE
Confidence 99999999887776665433
No 95
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.75 E-value=0.0034 Score=65.36 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec---------
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD--------- 101 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~--------- 101 (475)
...+.+.++..+.++|.|...+..++++.+..+++ ++.+..++...+.++|+.+++.+.+.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 34677888889999999999999999998865432 35667888889999999999988876621
Q ss_pred -----------------cCCccchhHHHHHHHHHHHHHH
Q 011918 102 -----------------NLGWKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 102 -----------------~~g~~~~F~i~~v~~~~~~ivf 123 (475)
..+|+..|.+.++..++..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2469999987776555444433
No 96
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.74 E-value=0.0016 Score=67.71 Aligned_cols=109 Identities=11% Similarity=-0.033 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
..+...+...+..++..++ .+|.+.| +-+.+++++.+++.+..++. .
T Consensus 48 ~~s~~~~~~~~~~~~~g~l----~dr~G~r-------~~~~~~~~~~~~~~~~~~~~----------------------~ 94 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIM----LAIIGAR-------RWIAGIMVLWGIASTATMFA----------------------T 94 (412)
T ss_pred HHHHHHHHHHHHHhhHHHH----HHHhChH-------HHHHHHHHHHHHHHHHHHHh----------------------c
Confidence 3444444444455555443 3444322 23566777777776665543 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.|++|....|.....+.+..|++.|+..+|++....++|..+++.++....
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999988876543
No 97
>PRK03545 putative arabinose transporter; Provisional
Probab=97.73 E-value=0.0012 Score=67.85 Aligned_cols=84 Identities=13% Similarity=-0.026 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh
Q 011918 303 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 382 (475)
Q Consensus 303 ~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~k 382 (475)
.+-+..++++.+++.+..+.. .+.++++...+++|++.....|....++.+..|++.|
T Consensus 74 r~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r 131 (390)
T PRK03545 74 RKLLIGLFVLFIASHVLSALA----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK 131 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 345667777777776655443 3466677778899999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 383 SIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 383 g~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+..+|++....++|..+++.+.....
T Consensus 132 ~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 132 AQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999998887654
No 98
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.73 E-value=0.0022 Score=67.07 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=77.4
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
++.+...+...+..|+..++ .+|.+.| +-+.+++++.+++.+..+..
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 108 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIV----SDRSNAR-------YFMGIGLIATGIINILFGFS---------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HhhcCCc-------hhHHHHHHHHHHHHHHHHHH----------------------
Confidence 34444445555555655553 3443322 23566777777766554432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+.+.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+...+.
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445566778899998889999999999999999999999999999999999988776654
No 99
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.72 E-value=0.00063 Score=68.59 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=93.7
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+..++..|+..++ .+|.++| +-+.++.++.+++.+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWL----LDRFGAR-------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 455666666666766766654 3443322 12445666666655544432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+.... +|
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~----- 147 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW----- 147 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc-----
Confidence 256667788899999999999999999999999999999999999999999999998877543211 23
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHH
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLA 449 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~ 449 (475)
...|+..+++.++..+....
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 148 -----QWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred -----hHHHHHHHHHHHHHHHHhhh
Confidence 34566666666555554433
No 100
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.66 E-value=0.0093 Score=65.70 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC--------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------- 103 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-------- 103 (475)
...+++++-.+.++|.|..-+...+++.|.++++ +|..++.+++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~-------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~ 243 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK-------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNT 243 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCC
Confidence 4567788999999999999999999999988653 4788999999999999999999998876432
Q ss_pred --------------CccchhHHHHHHHHHHHHHHHh
Q 011918 104 --------------GWKVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 104 --------------g~~~~F~i~~v~~~~~~ivf~~ 125 (475)
+|+.+|.+.++..++..+.++.
T Consensus 244 ~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 244 EDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2888999888777766555443
No 101
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.66 E-value=0.05 Score=57.82 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011918 354 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 411 (475)
Q Consensus 354 ~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~ 411 (475)
.-++.|+.---..+.+=++..++.|++..+.+.|+|.++.-.++.+|+.+..++...+
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777778888899999999999999999999999999999999998877543
No 102
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.66 E-value=0.00055 Score=68.35 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=93.6
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+...+..|+..++. +|. +..+-+.++.++.+++.+...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~--------------------- 82 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLS----DRF-------GRRRVLIIGLLLFALGSLLLAFA--------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHc-------CCeeeEeehhhhhhhHHHHhhhh---------------------
Confidence 3455555666666667666643 432 22234666777777774444321
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.+.++++...++.|+++....+.....+.+..|++.|+..+|++....++|..+++.+.....+.- +|
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~----- 150 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW----- 150 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH-----
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc-----
Confidence 224467788899999999999999999999999999999999999999999999999887764210 12
Q ss_pred cCcchhHHHHHHHHHHHHHHHH
Q 011918 425 NKGHYDYYYWLLTALSMANFLY 446 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~ 446 (475)
...|++.+++.++..++
T Consensus 151 -----~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 -----RWAFLISAILSLIAAIL 167 (352)
T ss_dssp -----CCHHHHHHHHHHHHHHH
T ss_pred -----ccccccccchhhhhhhh
Confidence 23466677777666553
No 103
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.64 E-value=0.0026 Score=64.56 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=80.2
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+.+.+...+..|+..++ .+|.++ .+-+.+|.++.+++.+..+..
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPL----SDRYGR-------RPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 344555555555666655553 344322 233556777777766654432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235566777899999999999999999999999999999999999999999999988877654
No 104
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.61 E-value=0.0026 Score=65.41 Aligned_cols=110 Identities=18% Similarity=0.029 Sum_probs=78.4
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+..++..++..++ .+|.+.| +-+.++.++.+++.+..+..
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRL----ADRIGRK-------RILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 345555555555666655553 3443322 33555666665555433321
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+.++++...++.+++.....|...+.+.+..|++.|+..+|++.....+|..+++.+....
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777889999999999999999999999999999999999999999999988776554
No 105
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.60 E-value=0.00046 Score=69.48 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=78.0
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
++.+...+...+..++..++ .+|.++| +-+.+|.++.+++.+..++.
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 80 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSV----SDRSNPR-------VFLPIGLILCAIVNLFFGFS---------------------- 80 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHH----HHhhCCe-------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence 44555555555555655554 3443322 23566777777776655443
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHH-HHHHhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS-LIMNAV 407 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~-~l~~~~ 407 (475)
.+.++++...++.+++.....|.....+.+..|++.|+..+|++.....+|..+++ .+....
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 24556677789999999999999999999999999999999999999999999988 344433
No 106
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.59 E-value=0.0012 Score=66.24 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=83.0
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+..++..|+..++ .+|.++| +-+.++.++.+++.+..+.... .+
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~-------~~---------- 88 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGAL----ADRYDRK-------KVMIGADLIRAVLVAVLPFVAL-------LG---------- 88 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHH----HHhhchh-------HHHHHHHHHHHHHHHHHHHHHH-------cC----------
Confidence 445556666666666766654 3443222 2345566665555555444321 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..+.++++...++.+++..+..|...+++.+..|++.|+..+|.+.....+|..+++.+.....
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1366777788899999999999999999999999999999999999999999999998877654
No 107
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.57 E-value=0.0051 Score=63.49 Aligned_cols=109 Identities=11% Similarity=-0.061 Sum_probs=81.7
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
..+...+...+..|+...+ .+|. ...+-+..++++.+++.+..+.. .
T Consensus 60 ~~~~~~~~~~~~~~~~g~l----~Dr~-------grr~~~~~~~~~~~~~~~~~~~~----------------------~ 106 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQT----IQAT-------DRRYVVILFAVLLTLSCLLVSFA----------------------N 106 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH----hccc-------CcHHHHHHHHHHHHHHHHHHHHH----------------------C
Confidence 3445566666666666553 3433 22344667777777766554332 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.|++.....|.....+.+..|++.|+..+|++....++|..+++.+.....
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778899999999999999999999999999999999999999999999999887765
No 108
>PRK10133 L-fucose transporter; Provisional
Probab=97.54 E-value=0.018 Score=60.44 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 99 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l 99 (475)
.+...++++..+.++|.|...+..++++.|.. +++ ++....+.+..+..+|..+++.+.+.+
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PES------SGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-Chh------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999999999999999753 222 244457777888888999988776543
No 109
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.54 E-value=0.0032 Score=66.12 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
.....+.+.+..+|.....-..-++..+.-+++.. .+...-++.|.+.++|++++..+.+++.++.+++..|.++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 33445566777888888888888888887665543 3666678889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 011918 113 AVIMLLSALSFFL 125 (475)
Q Consensus 113 ~v~~~~~~ivf~~ 125 (475)
++.-.+..+..+.
T Consensus 161 ~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 161 AALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666554433
No 110
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0033 Score=64.50 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=107.3
Q ss_pred CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011918 264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI-GLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 342 (475)
Q Consensus 264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~-G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (475)
.+++-+...+.+.+..|++..+. +|.. .||.-+ .+.+..++-+..++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt----~r~~--------Rr~lLl~~l~lFi~~n~l~alA------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLT----GRLE--------RRRLLLGLLALFIVSNLLSALA------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----cccc--------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45788889999999999888753 3321 123333 344555555544443
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCC
Q 011918 343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 422 (475)
Q Consensus 343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~ 422 (475)
.|.+.++..=++.+++--...+++...+.+++|++.|+..+|+-+...+++..+|..++.++.+.- +|
T Consensus 99 ---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW--- 166 (394)
T COG2814 99 ---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW--- 166 (394)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH---
Confidence 467778899999999999999999999999999999999999999999999999988888876432 55
Q ss_pred CCcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 423 NINKGHYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 423 ~ln~~~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
..-|+.+++++++..+..+...+
T Consensus 167 -------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678888888888887777777
No 111
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.50 E-value=0.0066 Score=64.70 Aligned_cols=111 Identities=13% Similarity=-0.047 Sum_probs=82.3
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
.|..+...+...++.|+..++. +|.++ .+-+.+|.++.+++.+..+..
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~----D~~Gr-------k~~l~~~~~~~~~~~~~~~~a--------------------- 91 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALG----DRIGF-------KRLLMLGGTLFGLASLAAAFS--------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 4556666666666777666643 44322 234666777777776655432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-cCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~-AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+...+.
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777888999999999999888877665 58899999999999999999999999887765
No 112
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.48 E-value=0.0058 Score=51.74 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 34556667899999999999999999999999999999999999999999999998877654
No 113
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.45 E-value=0.0039 Score=65.62 Aligned_cols=112 Identities=11% Similarity=-0.030 Sum_probs=82.7
Q ss_pred CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011918 264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 343 (475)
Q Consensus 264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (475)
.++..+...+..++..|+..++. +|.++ .+-+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLA----KRFGT-------RRLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHhCc--------------------
Confidence 34666666677777777666643 33322 233556666666665544321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...+++|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 345667788899999999999999999999999999999999999999999999988876654
No 114
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.44 E-value=0.0059 Score=62.57 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=82.2
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+.+.+..++..|+..++ .+|.+ ..+-+.+|.++.+++.+..+..
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALF----SSRYS-------LKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HccCc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 455666677777777766664 34432 2234566777777766655432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.++..+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 346777778899999999999999899999999999999999999888899988887776553
No 115
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.0069 Score=66.45 Aligned_cols=88 Identities=17% Similarity=0.360 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------- 101 (475)
-..++++|..+.++|.--+.| +|--..||+..+ ++...++.++|..--+|..+|.+++++.-+
T Consensus 236 ~~llff~~q~l~GIG~Tpi~t----lGisYiDDnvk~---~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFT----LGISYIDDNVKK---KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCcc----CCCccccccccc---cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 445778888888888766544 444444444332 235778899999999999999888876421
Q ss_pred --------cCC-ccchhHHHHHHHHHHHHHHHhc
Q 011918 102 --------NLG-WKVGFGVPAVIMLLSALSFFLA 126 (475)
Q Consensus 102 --------~~g-~~~~F~i~~v~~~~~~ivf~~~ 126 (475)
.+| ||+||++++..++++.+.+++.
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 233 9999999999999988887765
No 116
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.40 E-value=0.0069 Score=62.69 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-hHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~-~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.+++|+++.-.++++.--+......-++++..|+++.++...+. .++.++|..+.+.+.+...+.-
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------- 376 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------- 376 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence 56778888889999998899999999999999999998888774 5777888887777666554321
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
| ....|++++++.++..++=.+.-+
T Consensus 377 --G-~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 377 --G-FQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp --H-HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred --C-cHHHHHHHHHHHHHHHHHheeeec
Confidence 1 334677788776655554444433
No 117
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.01 Score=63.54 Aligned_cols=122 Identities=14% Similarity=0.041 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
...-..++++..+++.+...+. .+.+-++..-++.|+..-...........+..+...
T Consensus 364 ~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 364 ALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK 421 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence 3444566777777766444432 223335556677788877777777777788877777
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 460 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~ 460 (475)
-+-..|+..+..+++..+|+.+.+.+.+.+ +.++..|...++..+++.+.+.+....+++++++
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~~~ 485 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILRECLKRREKS 485 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhHHHHHhcccc
Confidence 778999999999999999998887655332 1145556667777777776666665344444433
No 118
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0008 Score=68.19 Aligned_cols=147 Identities=14% Similarity=0.074 Sum_probs=114.0
Q ss_pred cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011918 263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 342 (475)
Q Consensus 263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (475)
..+++...-++.-++.-|+...+. .|.+.+ .-|.+|++.+.++-++.++.+
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~----~~iGy~-------ipm~~Gl~vmf~sTilFafg~------------------ 157 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLI----DRIGYK-------IPMVAGLFVMFLSTILFAFGN------------------ 157 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhH----HHhccc-------cHHHHHHHHHHHHHHHHHHcc------------------
Confidence 345666666666667777766643 444433 348899999999988887764
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh-hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011918 343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 421 (475)
Q Consensus 343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~-kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~ 421 (475)
|++.++..-.++|+|..+++..|+++.++.-|+.- ||..||+-.-..++|..+|+..++.+++.- +
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~------G--- 224 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA------G--- 224 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc------C---
Confidence 23357788999999999999999999999999887 599999999999999999999998877542 1
Q ss_pred CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
...=|.++++++++..++-+++.+.++..+
T Consensus 225 -------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 225 -------KSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred -------CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 122378999999999988888877766554
No 119
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.35 E-value=0.006 Score=61.53 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------- 101 (475)
+.+.++++..+.++|.+.+ +...++++|.++++ +|....+++..+.|+|..+++.+.+.+..
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK-------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh-------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4566777777888887766 44678888887543 47888888888888888888777665543
Q ss_pred cCCccchh-HHHHHHH
Q 011918 102 NLGWKVGF-GVPAVIM 116 (475)
Q Consensus 102 ~~g~~~~F-~i~~v~~ 116 (475)
..+|++.| .+.++..
T Consensus 162 ~~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 162 HLAWGWAFVIVPAGIL 177 (366)
T ss_pred cccccchhHHHHHHHH
Confidence 34899999 4434333
No 120
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.32 E-value=0.0013 Score=68.91 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHH-HHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~-~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
-++|..+|.-+++++.-.++..+..+++...||++++..++|+.-.. .++|..+|++++..+... +
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---------f---- 523 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---------F---- 523 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---------e----
Confidence 34666678889999999999999999999999999999999987643 366666666665554311 0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
-...+|+..++.+++..+++..+-+..+++...+
T Consensus 524 ---g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i~ 557 (618)
T KOG3762|consen 524 ---GARTTFRIFGIACLVTLALFISIQLLLKRRGFIK 557 (618)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhhhhccccccC
Confidence 0334677788888877777777776666655433
No 121
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.29 E-value=0.0078 Score=61.32 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=81.4
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.++..+...+..|+...+. +|.++| +-+.++.++.+++.+..++.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWG----DRYGRR-------LPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhccH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4555666666666767666643 443322 33555666666665544332
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566777899999999999999999999999999999999999999999999998877654
No 122
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.26 E-value=0.0099 Score=63.02 Aligned_cols=168 Identities=8% Similarity=-0.062 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCC
Q 011918 220 KALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPC 298 (475)
Q Consensus 220 k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~ 298 (475)
++++.+.-.+.+.-+.|.+..- .+. ..|...++. .-......+.++.-++.+|+..++-.+...|.++|
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~-yl~~lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-- 73 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTP-YVQELGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-- 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--
Confidence 4566666777777777766543 333 233322221 11245566778888888888887654333333322
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc-cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc
Q 011918 299 QLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV-QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL 377 (475)
Q Consensus 299 ~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~A 377 (475)
++. +..|.+..+++++.++...... +-+.++.++.. ....++.+..+.+..++--...+..-+++.+..
T Consensus 74 --rp~--il~g~~~~~~~l~ll~~~~~~~------~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~ 143 (477)
T TIGR01301 74 --RPF--IAAGAALVAFAVILIGFAADIG------HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT 143 (477)
T ss_pred --HHH--HHHHHHHHHHHHHHHHhCchhh------hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 121 3345666666766665443110 00001111111 122234444455555565566667789999999
Q ss_pred Cchhh--hHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 378 PKSMS--SIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 378 P~~~k--g~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
|++.| +...+......++|+.+|..++...
T Consensus 144 p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 144 GGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 5788888888899999998887653
No 123
>PRK10054 putative transporter; Provisional
Probab=97.25 E-value=0.0095 Score=61.51 Aligned_cols=111 Identities=12% Similarity=0.055 Sum_probs=76.3
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..++..+.-++..|+..++. +|.++| +-+.+|.++.+++++..++..
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN-------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4445555555566667666643 343222 235567777777766554432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.+..+..+.+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+.....
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445567777777778888888999999999999999999999999999998887764
No 124
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.24 E-value=0.013 Score=59.53 Aligned_cols=109 Identities=20% Similarity=0.067 Sum_probs=77.3
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
..++..+...+..|+..++ .+|.+ ..+-+..|.++.+++.+..... .
T Consensus 31 ~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~----------------------~ 77 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA----------------------Q 77 (377)
T ss_pred HHHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------c
Confidence 3344455555555555443 34432 2234666777777776655433 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.+.++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999999999999999999999999999988876654
No 125
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.20 E-value=0.03 Score=56.37 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=73.4
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+..++..|+..++ .+|.+.| +-+.++.++.+++.+..+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~i~~~~~~~~~-------------------- 88 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFL----VDKFGPR-------YTTTLSLLLLAIPCLWAGLAV-------------------- 88 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHH----HHHhCch-------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 455566666666666666654 3443322 346677777777776655431
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
.+.++++...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+...
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 14566667788899987654 5577889999999999999999886666666666655543
No 126
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.20 E-value=0.0094 Score=61.73 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=81.1
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..++..+...+..|+..++ .+|.++ .+-+.+|.++.+++.+..++.
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~--------------------- 103 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLL----ADKFGR-------KPLMMWSIVAYSVGTGLSGLA--------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 344555555656666655554 344332 234566777777776655543
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 235567778899999999999999999999999999999999999999999999987765543
No 127
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.19 E-value=0.029 Score=57.52 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=73.7
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
+..++..+...+..|+..++. +|.++| +-+..+.++.+++.+..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 104 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLA----DRKGRK-------IMLLRSALGMGIVMVLMGLA---------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 344555566666667666543 333221 23455666666655443322
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456677778888888765 4667788889999999999999999888899999888877654
No 128
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.18 E-value=0.014 Score=60.41 Aligned_cols=81 Identities=17% Similarity=0.093 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011918 306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 385 (475)
Q Consensus 306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~ 385 (475)
+..|.++.+++++..... -+.|+++...++.++++....|.....+.+.+|++.++..
T Consensus 79 l~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a 136 (400)
T PRK11646 79 IVTGMLMRAAGFATMAIA----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRF 136 (400)
T ss_pred HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566777777777655432 2466777888999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 011918 386 STLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 386 ~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+|+......+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 137 FSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887664
No 129
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.15 E-value=0.015 Score=59.64 Aligned_cols=109 Identities=7% Similarity=-0.037 Sum_probs=76.1
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
..++..+...+..|+..++. +|.++| +-+.+|.++.+++.+..... .
T Consensus 43 ~~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~i~~~~~~~~----------------------~ 89 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGKIA----DRSGRK-------PVAIPGAALFIIASLLCSLA----------------------E 89 (392)
T ss_pred HHHHHHHHHHHHHHhHhHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHh----------------------C
Confidence 34444445555566666643 333222 23455666666665544321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++++++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677889999999999999999999999999999999999888888888888776653
No 130
>TIGR00895 2A0115 benzoate transport.
Probab=97.13 E-value=0.0055 Score=62.11 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 45556777899999999999999999999999999999999999999999999988876653
No 131
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.10 E-value=0.033 Score=62.30 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=77.0
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
++.+...+..++..++..++ ..|.+++ +-+.+++++.+++.++.++.
T Consensus 206 ~l~s~~~lG~iiG~li~G~L----sDR~GRR-------~~lii~lil~~i~~ll~afa---------------------- 252 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGL----ADKLGRK-------QCLLICLSVNGFFAFFSSFV---------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 45555555555555555543 4444322 33555655555555444332
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+.++++...++.|++.....|....++.+.+|++.||..++++....++|..+++.++..+
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566777889999999999999999999999999999999999999999999888766543
No 132
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.10 E-value=0.012 Score=59.14 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=74.5
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+...+..|+..++ .+|.++| +-+.+|.++.+++.+..++..
T Consensus 41 g~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (377)
T TIGR00890 41 AIWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIAD-------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence 344555555666666666654 3444333 235667777777776555432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+.+.+....++.++++....+.....+.+..|+ .|+.++|++....++|..+++.+...+
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 345556677899999998888888888888885 599999999999899988766555443
No 133
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.08 E-value=0.039 Score=58.00 Aligned_cols=107 Identities=9% Similarity=-0.021 Sum_probs=71.0
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
..+...+...+..|+..++ .+|.+.| +-+.+|.++.+++.+..++... ..-
T Consensus 68 ~~~~~~i~~~~~~~~~G~l----~Dr~g~k-------~~l~~~~~~~~i~~~~~~~~~~------------------~~~ 118 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSV----SDRSNPR-------VFLPAGLILAAAVMLFMGFVPW------------------ATS 118 (452)
T ss_pred HHHHHHHHHHHHHhhhhhh----hhccCCc-------hhHHHHHHHHHHHHHHHHhhhc------------------ccc
Confidence 3344444445555555553 3443322 3356677777777766555421 012
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHH
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASL 402 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~ 402 (475)
+.++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45566677789999999888887788889999999999999999888888754433
No 134
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.07 E-value=0.0069 Score=66.71 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=87.6
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------h---
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR--RSIA-------I--- 332 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~--~~~~-------~--- 332 (475)
+++.+.+-+.-.+..++..++ ..|. +..+-+++|+++.+++.++.++.+... +... .
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 455566666666666655553 2332 223458899999999988877654210 0000 0
Q ss_pred -hcCCCC--------------Cccccc--cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH
Q 011918 333 -NEGISD--------------DLRAVV--QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA 395 (475)
Q Consensus 333 -~~g~~~--------------~~~~~~--~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i 395 (475)
+..+-. ++.... ...++.++..-+++|+|+....+.+..++.+..|++.++.++|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 000000 000000 123444556779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 011918 396 ANLVASLIMNAVD 408 (475)
Q Consensus 396 g~~l~~~l~~~~~ 408 (475)
|..+|..++..+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9999888877654
No 135
>PRK10504 putative transporter; Provisional
Probab=97.07 E-value=0.026 Score=59.46 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...+++|++.....|.....+.+..|++.++..+|+......+|..+++.+...+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45556677899999999999999999999999999999999999888899999888877654
No 136
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.05 E-value=0.04 Score=57.25 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 426 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 426 (475)
+.++++..-+++|+++.+..+.......+.-|++.++..+|++.....+|..+|+.++....... +|
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw------- 169 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW------- 169 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH-------
Confidence 56677788899999998877777777778889999999999999999999999988886654211 23
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 011918 427 GHYDYYYWLLTALSMANFLY 446 (475)
Q Consensus 427 ~~~~~~f~~la~l~~~~~~~ 446 (475)
...|+..++++++..+.
T Consensus 170 ---~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 170 ---KVLFAIIAVMGLIAFVG 186 (413)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 34566666666655443
No 137
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0013 Score=71.13 Aligned_cols=214 Identities=17% Similarity=0.120 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
-..|+...+..-+ +..++|++++.|+++...... ..+.-.|..+|+.||+++++..+. .|+++.
T Consensus 60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g---~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~ 123 (571)
T KOG1237|consen 60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLG---AFLADSFLGRYFTINIGSLISLLG------------LFGLTL 123 (571)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 3444555555555 899999999999999874332 468889999999999999998754 677777
Q ss_pred HHHHHHHHHHHhcCccEeecC-CCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhcc
Q 011918 114 VIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK 192 (475)
Q Consensus 114 v~~~~~~ivf~~~~~~~~~~~-p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~ 192 (475)
..++.++..+-+ .+.... ..++|-+....++..++....+..-..+ ..+++..+..
T Consensus 124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r-------------------~~~~~fGadQ- 180 (571)
T KOG1237|consen 124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR-------------------PCLLAFGADQ- 180 (571)
T ss_pred HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC-------------------Ccchhhcccc-
Confidence 777777665544 111111 1123333333444444443221100000 0111111110
Q ss_pred CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCC-CCCCCceecCCccchh
Q 011918 193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDR-HVTPNFEIPSGSFNIF 270 (475)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~-~~~~~~~ip~~~~~~~ 270 (475)
+.+...++++. +...+.|..+.| .+.++.|+..++. +.. +|.+-+++.+..
T Consensus 181 ------------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~ 233 (571)
T KOG1237|consen 181 ------------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVL 233 (571)
T ss_pred ------------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHH
Confidence 01111122221 123567888888 7788888865554 232 788888899999
Q ss_pred hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011918 271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 323 (475)
Q Consensus 271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~ 323 (475)
|++.+++|.+....+.++. +.-..+..+|.++.+++.-..+.+
T Consensus 234 ~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 234 NALAILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred HHHHHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence 9999999999666543322 122267778888888887765433
No 138
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.02 E-value=0.0095 Score=62.71 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999998887654
No 139
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.00 E-value=0.058 Score=55.58 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999988999999999999999999888887777778888887766543
No 140
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.00 E-value=0.02 Score=59.42 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhH-HHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcch
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA-GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 429 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l-~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~ 429 (475)
++...+++|+.-.+..+.+..++.+.+|++.|+..||++.. ..++|..+|+.+++.+.+.- +. +. --..
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~--g~------~~--~~~~ 373 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF--GA------RG--MFDW 373 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--cc------hh--hhhH
Confidence 34444689999999999999999999999999999999875 45788888888777655211 00 00 0012
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 011918 430 DYYYWLLTALSMANFLYYLACCKA 453 (475)
Q Consensus 430 ~~~f~~la~l~~~~~~~~~~~~~~ 453 (475)
..+|.+.+++.++..+++++..|.
T Consensus 374 ~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 374 SAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 345667777777777777776553
No 141
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.00 E-value=0.0015 Score=67.20 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
..++++..+.++|.+..-|.......+.+++ ++|.+.+.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4455667778888888888777777765532 358899999999999999999989999998999999999998
Q ss_pred HHHHHHHHHHHhcCccEeecCC
Q 011918 114 VIMLLSALSFFLASPFYVKSKA 135 (475)
Q Consensus 114 v~~~~~~ivf~~~~~~~~~~~p 135 (475)
+..+++++..+..+++.+|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 376 LAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHHhcccccccCC
Confidence 8888887776655555544433
No 142
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.99 E-value=0.011 Score=62.40 Aligned_cols=86 Identities=10% Similarity=-0.062 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+.+++++.+++.+..+..-. + ...+.+.++...++.|++|-...|.....+.+..|++.||
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg 157 (467)
T PRK09556 95 QFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG 157 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence 4567777777776655554311 0 1135666778889999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Q 011918 384 IASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 384 ~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
.++|++.....+|..+++.+...
T Consensus 158 ~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 158 RFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred eeEEeeecccchhhhHHHHHHHH
Confidence 99999999999999999887654
No 143
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.99 E-value=0.019 Score=59.58 Aligned_cols=110 Identities=14% Similarity=0.032 Sum_probs=78.9
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+...+..|+..++ .+|.+ +.+-+.++.++.+++.+...... .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~-------------------~ 123 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAA-------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence 344555555555666666654 33332 22335666666666665554331 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 404 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~ 404 (475)
..+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 133456777889999999999999999999999999999999999999999999999887
No 144
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.95 E-value=0.033 Score=57.09 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 426 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 426 (475)
+.++++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..+++.++..+... .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 677888889999999986 456666678899999999999999999999999999888776532 155
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 011918 427 GHYDYYYWLLTALSMANFLYYLACC 451 (475)
Q Consensus 427 ~~~~~~f~~la~l~~~~~~~~~~~~ 451 (475)
...|...++++++..++.+...
T Consensus 144 ---r~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 144 ---QLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHc
Confidence 3356666777666555444433
No 145
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.92 E-value=0.026 Score=55.85 Aligned_cols=111 Identities=17% Similarity=0.069 Sum_probs=82.8
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+..++..|+..++ .+|.++| +-+.+|.++.+++.+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 84 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYL----SDRFGRR-------RVLLLGLLLFALGSLLLAFA--------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence 445555556666666666654 3443322 23666777777776655443
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.+++..+..+.......+..|++.|+..+|+.....++|..+++.+...+.
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 235667788899999999999999999999999999999999999999999999998887765
No 146
>PRK03699 putative transporter; Provisional
Probab=96.92 E-value=0.057 Score=55.51 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667789999999999999999999999999999999998888888888888776543
No 147
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.89 E-value=0.0026 Score=53.97 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.+.+...+.+++.+...+...++..|.++++ +|.+..++.+.+.++|..+++.+.+++.+..+|+..|.+
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE-------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh-------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 3456667778888999999999999999988653 478889999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHHh
Q 011918 112 PAVIMLLSALSFFL 125 (475)
Q Consensus 112 ~~v~~~~~~ivf~~ 125 (475)
.++..+++.+....
T Consensus 123 ~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 123 LAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777766655543
No 148
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.89 E-value=0.079 Score=54.15 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=81.0
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+.-.+..|+..++ .+|.++ .+-+.+|.++.++++...+..
T Consensus 44 G~~~s~~~l~~~~~~~~~g~l----~dr~g~-------k~~~~~~~~~~~~~~~~~~~~--------------------- 91 (381)
T PRK03633 44 GVVSSSYFTGNLVGTLLAGYV----IKRIGF-------NRSYYLASLIFAAGCAGLGLM--------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 445555555556666665554 344322 234667777777777655432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+.....
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 245667778899999999999998888888999999999999999999999999998876653
No 149
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.88 E-value=0.054 Score=56.35 Aligned_cols=113 Identities=11% Similarity=0.002 Sum_probs=83.9
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+..++..|+..++ .+|.+. .+-+.+|+++.+++.+.......
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l----~~r~G~-------r~~~~~g~~l~~~g~~l~~~~~~------------------- 90 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIF----MKKLSY-------KAGILLGLFLYALGAFLFWPAAE------------------- 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCc-------hHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 456666666677777766654 344432 24577788888887655432210
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
..+.++++...++.++|--+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135566677789999999999999999999999999999999999999999999999887765
No 150
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.86 E-value=0.055 Score=56.57 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=74.6
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..++..+...+..++..++ .+|.+.| +-+.+|.++.+++.+..+.... .
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l----~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSV----SDRSNPR-------VFLPAGLILSAAVMLLMGFVPW------------------A 114 (438)
T ss_pred HHHHHHHHHHHHHhhhccchh----hhccCCc-------eehHHHHHHHHHHHHHHhcccc------------------c
Confidence 344444444445555555553 3443322 2345577777776655443210 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
..+.+.+....++.++++....+...+.+.+..|++.|+..+|++....++|..+++.+...
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 12344455667889999998888888999999999999999999999999999888776543
No 151
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.86 E-value=0.027 Score=58.01 Aligned_cols=110 Identities=10% Similarity=0.066 Sum_probs=80.0
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+...+..|+..++ .+|.+. .+-+..|+++.+++.+..++.
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l----~dr~G~-------r~~l~~~~~l~~~~~~~~~~a--------------------- 94 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWL----HQHVSE-------RRSVAISLLLIAVGALMRELY--------------------- 94 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHH----HHHhCc-------hHHHHHHHHHHHHHHHHHHHC---------------------
Confidence 444555555666666666554 344332 345778888888888776654
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+.....
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456677899999999999999999988888 67899999999888888888888776543
No 152
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.28 Score=52.02 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhh-hh-heeccCCccchhH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC-IV-YIQDNLGWKVGFG 110 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~-~~-~l~~~~g~~~~F~ 110 (475)
.-++.+|-.+.++..|.......-++.+.=+++ .|...=+..=+++++|.+++..+ .+ .++..-.|++.++
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~-------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKN-------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh-------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 456788888999999999888888888765432 35555556678889999988433 33 4667778999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011918 111 VPAVIMLLSALSFFL 125 (475)
Q Consensus 111 i~~v~~~~~~ivf~~ 125 (475)
.+.+..++.++...+
T Consensus 189 ~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 189 FPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHhc
Confidence 998877777776544
No 153
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.029 Score=59.68 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 427 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 427 (475)
.+-++...+++|+.|-...|.--.....-=.++.+++.||+|+...++|+.+|+++...+.+.....+..+|
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------- 205 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------- 205 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--------
Confidence 444667779999999999999999999999999999999999999999999999998775432211223345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 428 HYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 428 ~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
.+.|.+-++++++.+++.++..+
T Consensus 206 --~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 206 --RWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred --eeehhHHHHHHHHHHheEEEEec
Confidence 46788888888877765554444
No 154
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.77 E-value=0.069 Score=53.83 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.+++...+++.++.-.+..|...+++.+..|++.|+...|+......+|..+++.+.....
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677788888888899999999999999999999999999999999999988876554
No 155
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.71 E-value=0.53 Score=49.79 Aligned_cols=59 Identities=12% Similarity=-0.112 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 98 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~ 98 (475)
+.+.+++.-.+.++| |..-+.....+.+.|+++ +|..+..++-...|+|..++.++.+.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~-------~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKA-------KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh-------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777777788888 556677888899988653 47788888877778888766555543
No 156
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.70 E-value=0.087 Score=55.53 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHH
Q 011918 356 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 435 (475)
Q Consensus 356 vl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~ 435 (475)
++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.... +| ..-|++
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~f~~ 178 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGSFLI 178 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHHHHH
Confidence 67788888776777777777776 68999999999999999998888776544211 33 345666
Q ss_pred HHHHHHHHHHHHHHH
Q 011918 436 LTALSMANFLYYLAC 450 (475)
Q Consensus 436 la~l~~~~~~~~~~~ 450 (475)
.++++++..+..++.
T Consensus 179 ~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 179 LGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777666555544433
No 157
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.70 E-value=0.018 Score=61.07 Aligned_cols=114 Identities=10% Similarity=0.035 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch---
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--- 380 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~--- 380 (475)
+-+.+|+++.+++++..++. .+.++++...++.++|+-+..|....++.++.|++
T Consensus 80 ~~l~~~~~~~~~g~~~~~~~----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 80 KTMVLGGIVLMLGHFMLAMS----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 34667777777777655432 12344556677899999999999999999998865
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011918 381 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 381 ~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
.|+...++++....+|..+|+.+...+.+.. +| ..-|.+.++.++++.+.++...+.++
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3888999999999999999999887765211 22 34555566666666666666665554
No 158
>TIGR00898 2A0119 cation transport protein.
Probab=96.68 E-value=0.021 Score=60.65 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=78.9
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++.+++..+..++..++...+ ..|.++| +-+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l----~Dr~Grr-------~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYL----SDRFGRK-------KVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHh----hhhccch-------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 345566666666666666554 3443322 22445555555554444332
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.+...+
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778889999999999999999999999999999999999998999998888776554
No 159
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.65 E-value=0.029 Score=59.83 Aligned_cols=61 Identities=8% Similarity=-0.135 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+.++++...++.|+++....+....++.+.+|++.||.+++++.....+|..+++.+...+
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999988877654
No 160
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.64 E-value=0.12 Score=54.54 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
|.+.+...-++.|++|.... .....+++..|++.|++++|++..+..+|..+++.++.+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999 9999999999999999999999999999999999999884
No 161
>PTZ00207 hypothetical protein; Provisional
Probab=96.63 E-value=0.068 Score=58.13 Aligned_cols=119 Identities=11% Similarity=0.054 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
+.+-+.+|.++.+++.+..++... + ....+.+.+....++.|+|+....+.....+.+..| +.
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 344567888888888887766421 1 012356667788899999999999999999999888 67
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y 454 (475)
||.++|++....++|..+.+.+...+... + ...+|++++++.++..++.+...+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD-------N----------TSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 89999999999999998655544332210 1 23567777877777666666655543
No 162
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.62 E-value=0.11 Score=55.02 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011918 306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 385 (475)
Q Consensus 306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~ 385 (475)
+.++.++.+++.+..++. .+.++++...++.|++.....+.....+.+..|++.|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 145 (496)
T PRK03893 88 MVISIVLFSVGTLACGFA----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA 145 (496)
T ss_pred HHHHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 556666666666655442 2456677788999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 011918 386 STLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 386 ~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+|++....++|..+++.+...+.
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 146 SGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887654
No 163
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.62 Score=49.08 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 100 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~ 100 (475)
-.++-..+..++.-...-.-.++.+...++. ++|.+..+|..++.|+|.++...+.+.+.
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~------~ER~~l~s~R~~~~~~g~~l~~~~~~plv 173 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDP------QERASLTSWRMVFASLGGLLVAVLFPPLV 173 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666777777777778888877654 35999999999999999888766665443
No 164
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.62 E-value=0.083 Score=56.35 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011918 306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 385 (475)
Q Consensus 306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~ 385 (475)
+.++.++.+++....++.. ...+.+|+...+++.+++-....+...+++.+..|++.|+..
T Consensus 84 ll~~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~ 144 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAG 144 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 4566666666665554432 014577778888999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 011918 386 STLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 386 ~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+|+......+|..+++.+...+.
T Consensus 145 ~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 145 AAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776654
No 165
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.60 E-value=0.14 Score=52.36 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.+++.....+...++..+..|++.++..++.+.....++..+++.+.....
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788899888888888888888889899999999998888888888888776654
No 166
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.57 E-value=0.051 Score=55.19 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.....+-++.-....+....++.+..|.+.||..+|+.....+.+..+|+++.+...
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 4456688899999999999999999999999999999999999999999999886544
No 167
>PRK12382 putative transporter; Provisional
Probab=96.57 E-value=0.085 Score=53.98 Aligned_cols=119 Identities=11% Similarity=0.020 Sum_probs=79.8
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+...+..|+..++. +|.++| +-+.+|.+..+++.+........ .. ..
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~~~~~~~~~~~~~-----~~---------~~ 108 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRLA----DQYGAK-------RSALQGMLACGLAGLAYLLAAIL-----PV---------SA 108 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH----Hhhcch-------HHHHHHHHHHHHHHHHHHhhhcc-----cc---------ch
Confidence 4455666666677777777653 443322 23555655555443322111100 00 01
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..+.++++..-++.|+++....|...+.+.+..|++.|+..+|.+......|..+++.++..+.
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2356677788899999999999999999999999999999999998888888889888876654
No 168
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.17 Score=51.85 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.++++++-.+=++|..+...+-.++++|.|+++. +|.+...+---++.+|.++||-.++.+-|..|+.+.|++
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 45677888888899999999999999999998865 488889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011918 112 PAVIMLLSALSFFL 125 (475)
Q Consensus 112 ~~v~~~~~~ivf~~ 125 (475)
.++.+++..++-++
T Consensus 232 L~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 232 LAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888887776444
No 169
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.51 E-value=0.12 Score=53.16 Aligned_cols=84 Identities=15% Similarity=0.003 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011918 306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 385 (475)
Q Consensus 306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~ 385 (475)
+.++.++.+++++..++.. ...+.+++...+++.++......|..-+++.+..|++.|+.+
T Consensus 71 l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~ 131 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG 131 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence 5566667776766554431 013566667777888899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 011918 386 STLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 386 ~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.++.....++|..+++.+...+.
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999888999999988776554
No 170
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=1.2 Score=46.81 Aligned_cols=164 Identities=12% Similarity=0.022 Sum_probs=94.4
Q ss_pred cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCccccc
Q 011918 267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS--DDLRAVV 344 (475)
Q Consensus 267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~--~~~~~~~ 344 (475)
+..++.+.+-+..-+-...+.++.||. ++ +....-+.+|.++.-++++...+. ...+..+. ++....-
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~~ 349 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLLF 349 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCccccccc
Confidence 345555555555444333344343332 22 333344666666555554433221 11111111 1111112
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.-+...-...++++|+++.+....-+..+....| +-+..+-+++-+..++++-++-......
T Consensus 350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~----------------- 411 (461)
T KOG3098|consen 350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL----------------- 411 (461)
T ss_pred ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh-----------------
Confidence 2334344566799999999999999999999985 4455777888888888877765333221
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
.+..+...+.+++.+..++++.+.++++..+++.
T Consensus 412 ---~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~ 445 (461)
T KOG3098|consen 412 ---LLYIYTLGLPIFCVIATTIFFIVAERTQAMEKKL 445 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1344556677888888899999998886444444
No 171
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.055 Score=55.67 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011918 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 379 (475)
Q Consensus 300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~ 379 (475)
.+|.+=|++|++++++..+..++. .|.+.++..+++.|+-+-.-.|......+.--|+
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr 148 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR 148 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence 466777899999999998887764 3566677888999999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHH
Q 011918 380 SMSSIASTLSGAGLSAANLVASLIMN 405 (475)
Q Consensus 380 ~~kg~~~g~~~l~~~ig~~l~~~l~~ 405 (475)
+.||...++|..+..+|+.+.+.+..
T Consensus 149 ~eRG~~~siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 149 KERGTWWSIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred cccCceEEEehhhhhcccchHHHHHH
Confidence 99999999999999999999998884
No 172
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.37 E-value=0.87 Score=49.60 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
.+...+..|..+.++|.|...- ....++|..+.+ .|..++.+..+..-+...+++.+...+..+.+|+|.|.
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k-------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNK-------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccc-------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 3455688899999999887764 455678887542 24444444443333333345555545555679999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011918 111 VPAVIMLLSALSFFL 125 (475)
Q Consensus 111 i~~v~~~~~~ivf~~ 125 (475)
+.++...++++...+
T Consensus 201 ~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 201 IFIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887766444
No 173
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.36 E-value=0.15 Score=52.64 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=77.5
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+...++.|+..++ .+|.++| +-+.++.++.+++.+..+...
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~l----aDr~grr-------~vl~~~~~~~~~~~~~~~~~~-------------------- 89 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAF----ADSFPKG-------RVMFIANGIKLLGCLLMLFGI-------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHh----hhccCCc-------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 455566666777777877764 3443332 235556555555544332211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+. +...+++|+++.+..|...+.+.+..|++.++.++|++.....+|..+|+.++....
T Consensus 90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344688999999999999999999999999999999999988999999998887764
No 174
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.30 E-value=0.095 Score=54.21 Aligned_cols=116 Identities=7% Similarity=-0.091 Sum_probs=79.4
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+..++..|+..++ .+|.++| +-+.++.++.+++++..++... . .
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l----~dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~-------~----------~ 106 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVL----ADRYDRK-------KLILLARGTCGLGFIGLALNAF-------L----------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHH----hhhcCCc-------eEEEehHHHHHHHHHHHHHHHH-------c----------C
Confidence 455566666666666766554 3443322 1244566666666655443210 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..+.++++...++.+++..+..+.....+.+..|++.++..+|++....++|..+|+.+...+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1345666677788899999889999999999999999999999998888899988888876654
No 175
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.23 E-value=0.1 Score=52.58 Aligned_cols=90 Identities=9% Similarity=-0.093 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH--HHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA--STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~--~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
+.++++..-++++.++....|...+...+..|++.|+.. .+......++|..+++.+.......- +|
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~----- 154 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF----- 154 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc-----
Confidence 344455555667777777788888888888887776643 56666667788888887776553210 23
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
...|++.+++.++..++.+...+
T Consensus 155 -----~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 -----TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 33556666665555554444333
No 176
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.19 E-value=0.068 Score=57.04 Aligned_cols=84 Identities=8% Similarity=-0.017 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--h
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--M 381 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~--~ 381 (475)
+-+.+|.++.+++.+.+++... ... .++...+++++|+-+..|....++.++-|++ .
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~--------------------~~~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~ 140 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLL--------------------KPD-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR 140 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--------------------chh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh
Confidence 4577888888888776664310 011 1335678889999999999999999999877 4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
|+..+++++....+|..+|+.+...+.
T Consensus 141 ~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 141 LDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999998887765
No 177
>PRK11043 putative transporter; Provisional
Probab=96.17 E-value=0.16 Score=52.19 Aligned_cols=62 Identities=10% Similarity=-0.026 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.+++.....+...+.+.+..|++.++...+......++|..+++.+...+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788899888888888888999999998888888877777788888887776654
No 178
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.81 Score=47.00 Aligned_cols=67 Identities=9% Similarity=-0.038 Sum_probs=51.3
Q ss_pred CCccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011918 28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 101 (475)
Q Consensus 28 ~~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~ 101 (475)
+......+|..++.+++.|.|..+...+++++..-+++.. .+|- |.---..-+|+.++|.+++++-.
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a----~~rl---nl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA----AFRL---NLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH----HHHH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999877543 2233 33344456899999998887654
No 179
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.15 E-value=0.077 Score=56.43 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=75.2
Q ss_pred HhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHH
Q 011918 280 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359 (475)
Q Consensus 280 pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~ 359 (475)
|+-..+.-++..|.++| +-+.+++++.+++.+..++...+- .-| ...+++++..-+++|
T Consensus 71 ~ig~~~~G~l~Dr~Grr-------~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G 129 (490)
T PRK10642 71 PLGGLFFGMLGDKYGRQ-------KILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQG 129 (490)
T ss_pred HHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHH
Confidence 33333334445554433 457778888888877776653210 000 112234677889999
Q ss_pred HHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 360 ~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+++-...|.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus 130 ~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 130 FSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred hHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888887666544
No 180
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.15 E-value=1.8 Score=43.98 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-CccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-g~~~~F~ 110 (475)
..+.++.+-.++++|.+....-..+++-+-|++ |....-..|-.+.++|+.+++.+.+.+.++. ||+.+.+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 467788888888888888877778877776643 4677778889999999999999988888776 7998888
Q ss_pred HHHHHHHHHHHHHHhc
Q 011918 111 VPAVIMLLSALSFFLA 126 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~ 126 (475)
.=++.-++++++.+-.
T Consensus 170 ~WAl~allAl~~WlPq 185 (395)
T COG2807 170 FWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7777777777766544
No 181
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.12 E-value=0.68 Score=47.67 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD 430 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~ 430 (475)
....|++.|+|=-.....++++..+.+|++-|+...++-+.+.=+|..++..+....- ++....++.
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL-------------~~~s~~rL~ 158 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL-------------DPFSPERLI 158 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-------------cccCHHHHH
Confidence 4588899999999999999999999999999999999999998899999887765432 122212233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q 011918 431 YYYWLLTALSMANFLYYLACCKAYGPFKGRVG 462 (475)
Q Consensus 431 ~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~ 462 (475)
-+....+++..++-++-..+.++|.++..
T Consensus 159 ---~v~~~~a~i~~~l~~ia~wg~E~r~~~~~ 187 (403)
T PF03209_consen 159 ---QVIQGVALIALLLNLIALWGQEPRRSRRA 187 (403)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence 33334444444444445555555555544
No 182
>PRK10133 L-fucose transporter; Provisional
Probab=96.08 E-value=0.48 Score=49.71 Aligned_cols=111 Identities=13% Similarity=-0.013 Sum_probs=78.0
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
++.+...+...+..|+..++ .+|.+. .+-+.+|+++.+++.+....... .
T Consensus 65 l~~~~~~~g~~i~~~~~g~l----~dr~G~-------r~~l~~g~~~~~~~~~l~~~~~~-------------------a 114 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGIL----MKKLSY-------KAGIITGLFLYALGAALFWPAAE-------------------I 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHHHh-------------------c
Confidence 44455555556666655553 454432 23466788777777754322110 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
.+.++++...+++|+|.....+....++.+.+|++.+...++++....++|..+++.++..
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999998888888778888888888888888877654
No 183
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.00 E-value=0.13 Score=60.73 Aligned_cols=63 Identities=22% Similarity=0.079 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.|.++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.++.++.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888999999999999999999999999999999999999999999999999998765
No 184
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=95.94 E-value=0.12 Score=60.73 Aligned_cols=62 Identities=16% Similarity=-0.045 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.++..+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788899999999999999999999999999999999999999999999998887654
No 185
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=95.93 E-value=0.19 Score=52.84 Aligned_cols=60 Identities=8% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+++++..-++.|++.....|....++.+.+|++.||.++|++.....+|..++..+....
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667779999999999999999999999999999999999998889988887665443
No 186
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.87 E-value=0.26 Score=52.68 Aligned_cols=117 Identities=10% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-- 381 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~-- 381 (475)
+-+.+|.++.+++....++.. -+.+++....++++++.-+..|....++.++.|++.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~ 147 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR 147 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence 346677777777765554321 112334466788899999988999999999887543
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 457 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~ 457 (475)
++..+++++....+|..+|+.+...+.+.- +| ..-|.+.++.+++..+.+++..+++++.
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 445788888899999999998887764211 22 3445555656666666666666666543
No 187
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.81 E-value=0.1 Score=52.61 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+.+|.++.+++.+..+...... .......++++...+++|++.....+.....+.+..|++.|+
T Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 131 (394)
T TIGR00883 66 KTLVITLLMMGIGTLLIGLLPSYA--------------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG 131 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChh--------------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence 345667777777766655432100 000122334667779999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 384 IASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 384 ~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+++++.....+|..+++.+.....
T Consensus 132 ~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 132 FYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766543
No 188
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.71 E-value=0.18 Score=53.20 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+.+++.-.++.|++..+- +|. .+..+-+.+|.+++.+|-++...++.. +
T Consensus 74 G~viaa~slg~~i~~liF~~Ws----~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~-----~------------ 126 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS----NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV-----P------------ 126 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc----ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----c------------
Confidence 4556667888888889888731 222 122344888999999998887666531 0
Q ss_pred cchHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC-C
Q 011918 345 QMSAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP-S 422 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~g-El~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~-~ 422 (475)
+-+.|+++..+++.|+| -.+..--.+.-..+..++++|+++.+ .....+|..+|+.+...+...- ..+-.|.+ -
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~--~~~~vlg~ilGp~~q~~f~~Lg--~~G~~i~~~~ 202 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAAT--SGGFVLGIILGPTIQLAFTPLG--EKGFMILPGL 202 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHh--hhHHHHHHHHhHHHHHHHhhhc--CCceEEcCcc
Confidence 12688899999999999 55554455554555666666655444 4445556666665555443211 11123444 2
Q ss_pred CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 423 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 423 ~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
.+|..... =|+.+++.+++.+......|-..+..
T Consensus 203 ~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 203 IFNMYTAP--AWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred eEEecchH--HHHHHHHHHHHHHHHHhheeecccCc
Confidence 33422222 25566777777766666665444433
No 189
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=95.70 E-value=1 Score=47.66 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 011918 305 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 384 (475)
Q Consensus 305 ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~ 384 (475)
-+.+|++.-.++++..++.+. -|++-...+....-.+..|...+++.+++.++-+|.
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~-----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~ 366 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE-----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGK 366 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc-----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence 467788888888888777642 134444455666667889999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhc
Q 011918 385 ASTLSGAGLSAANLVASLIMNAVDDI 410 (475)
Q Consensus 385 ~~g~~~l~~~ig~~l~~~l~~~~~~~ 410 (475)
.+++.....++.+.+++.+.+.+...
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999887765543
No 190
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.45 Score=48.96 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=59.2
Q ss_pred HHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC---ccchhHHHHHHHHH
Q 011918 42 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIMLL 118 (475)
Q Consensus 42 li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g---~~~~F~i~~v~~~~ 118 (475)
++++|-|-| +.-.+..+.-|+++ ++..+..++= .-|+|..+..++.|.+....| |+.+-.+..+.+++
T Consensus 114 l~G~~GasF-av~m~~~s~~fP~~-------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 114 LLGLAGASF-AVGMPNASFFFPKE-------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHhccccee-hcccccccccCChh-------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444433 44455667778664 3566666666 899999999999999998999 99999999999999
Q ss_pred HHHHHHhcCc
Q 011918 119 SALSFFLASP 128 (475)
Q Consensus 119 ~~ivf~~~~~ 128 (475)
+.+.+++..+
T Consensus 185 ~~v~~~~~~~ 194 (417)
T COG2223 185 AAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHhC
Confidence 8888887654
No 191
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.69 E-value=0.098 Score=54.24 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhH
Q 011918 306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSI 384 (475)
Q Consensus 306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~A-P~~~kg~ 384 (475)
+.+|.++.+++++...... .. ......+|.+..+++.+++..+..+.-.+...+.+ +++.|+.
T Consensus 73 i~~~~~~~~i~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~ 136 (437)
T TIGR00792 73 LLIGAIPFSIVLVLLFTTP--------DF--------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES 136 (437)
T ss_pred HHHhHHHHHHHHHHHHhCC--------CC--------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence 5567777776665554321 00 01134678888889999998888887788888776 5788999
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 011918 385 ASTLSGAGLSAANLVASLIMN 405 (475)
Q Consensus 385 ~~g~~~l~~~ig~~l~~~l~~ 405 (475)
..+.......+|..+++.+..
T Consensus 137 ~~~~~~~~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 137 LSTFRRFGATLGGLLVAVIVL 157 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888877766543
No 192
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.66 E-value=3.8 Score=43.79 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.+.+.-.+.+++.++...+...+++|.+.++ +|..+-++ +.....|+.+++.+.+|+-+ +|++.+.+
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~-------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~ 239 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK-------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI 239 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc-------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 4455666666778888888889999999988764 46777777 88888888888888888876 89999998
Q ss_pred HHHHHHHHHHH
Q 011918 112 PAVIMLLSALS 122 (475)
Q Consensus 112 ~~v~~~~~~iv 122 (475)
..+..++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77766666555
No 193
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.66 E-value=2.5 Score=45.20 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~ 110 (475)
+...+++|-.+.++|.|+..-.+.-+++|.-++ +.|...-+.+.+++++|.+++..+....++. .+|+..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence 567889999999999999987777777765432 2578888899999999999996544444433 48997777
Q ss_pred HHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALS 122 (475)
Q Consensus 111 i~~v~~~~~~iv 122 (475)
+..+.-++-.+.
T Consensus 214 ~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 214 LALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHH
Confidence 655554444444
No 194
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.59 E-value=0.13 Score=56.59 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=94.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh----hcCC-----------C--------CCcc--ccccchHH-H
Q 011918 301 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI----NEGI-----------S--------DDLR--AVVQMSAM-W 350 (475)
Q Consensus 301 s~~~ki~~G~~l~~ls~~~~~~~~~~----~~~~~~----~~g~-----------~--------~~~~--~~~~vs~~-w 350 (475)
.-++-+++|+++++++.++.++.+.. +.+... .++- . ++.. ...+..+| .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 33566999999999999988876542 211111 0000 0 0111 11222233 4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHH----HHHHHHHHHHHHhhhhc-cc----CCCCCCCCC
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL----SAANLVASLIMNAVDDI-TK----RGGNGGWIP 421 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~----~ig~~l~~~l~~~~~~~-~~----~~~~~~w~~ 421 (475)
++..-++.|+|+.-+.+.|.+++.+-+-++-..+++|+.+... ++|.++|+.+.+++.+. .. ...++.|+.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 4567799999999999999999999999999999999888655 45666666666666544 11 111223331
Q ss_pred CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
. -..=|.+.++++++..+-++.+=|.+.+..
T Consensus 320 A------WWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 320 A------WWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 1 111244567778888887777777776543
No 195
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.57 E-value=0.027 Score=58.68 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheecc------CCc
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGW 105 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~------~g~ 105 (475)
...+++...+.+++.|...+....++.|.+++ +.|.+++.+++ ...++|+.++|.+.+++.+. +||
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 34566777788888888889999999998864 35888999997 56789999999999998876 468
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 011918 106 KVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 106 ~~~F~i~~v~~~~~~ivf~~ 125 (475)
+..|.+.++..+++.+.+..
T Consensus 381 ~~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998887776666655544
No 196
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.53 E-value=0.38 Score=49.60 Aligned_cols=113 Identities=16% Similarity=0.001 Sum_probs=73.8
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+...+...+..|+..++ .+|.+ ..+-+..|.++.+++.+....... .
T Consensus 51 g~~~~~~~~~~~i~~~~~g~l----~dr~g-------~k~~l~~~~~~~~~~~~~~~~~~~------------------~ 101 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGVV----AEIIG-------PLKTMMIGLLLWCVGHAAFIVFGL------------------G 101 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence 344455555666666666654 34432 223355677777666543322110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHH-HHHHHHHHh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN-LVASLIMNA 406 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~-~l~~~l~~~ 406 (475)
..+.+.++..+++.+++.....+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12455556678888999888888878888889999999999999999888886 467766544
No 197
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.23 Score=52.62 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
..+-+..+.++.+++-+...+.. +.+.+.++..=+++|++|-...|.--....+-+|...
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 33567788888877766655543 1444456788899999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
|++..++.+...-+|+.++..+++..-..+ -|| ...|.+.++++++-.++++.+.+
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888899988887777654321 267 23455677777666666555544
No 198
>PRK09952 shikimate transporter; Provisional
Probab=95.44 E-value=0.22 Score=52.13 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=73.6
Q ss_pred HHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHH
Q 011918 279 IGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLS 358 (475)
Q Consensus 279 ~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~ 358 (475)
.|+-..+.-++.+|.++ .+-+.+++++.+++.+..++....- .-| -.+++.++..-+++
T Consensus 77 ~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~l~~~R~l~ 135 (438)
T PRK09952 77 RPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSFS-----TIG---------WWAPVLLVTLRAIQ 135 (438)
T ss_pred HhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcHH-----HHH---------HHHHHHHHHHHHHH
Confidence 34444444445555433 2446667777777766655542110 000 01233466677899
Q ss_pred HHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 359 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 359 ~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
|+++-...|....++.+..|++.||.+++......++|..++..+...+
T Consensus 136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887766544
No 199
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.31 E-value=0.37 Score=50.20 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=73.9
Q ss_pred HhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHH
Q 011918 280 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359 (475)
Q Consensus 280 pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~ 359 (475)
|+-..+.-++.+|.++| +-+.+++++.+++.+..++...+- .....+..+++..-+++|
T Consensus 77 ~ig~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~R~l~G 135 (432)
T PRK10406 77 PIGGWLFGRIADKHGRK-------KSMLISVCMMCFGSLVIACLPGYE--------------TIGTWAPALLLLARLFQG 135 (432)
T ss_pred HHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHhhcCCch--------------hHHHHHHHHHHHHHHHHH
Confidence 34444444455655433 346677777777776655532100 000124556777889999
Q ss_pred HHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 360 ~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+++-...|....++.+.+|++.||.+++++......|..++..+...+
T Consensus 136 ~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 136 LSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred hhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888887777665443
No 200
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=95.25 E-value=1.9 Score=44.58 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+..|+++..+..+.....+. +.. +|. .=++.+++--=+...+=++..+.+|++..+
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~~-------------------~~~-f~i--~gll~g~s~G~~qA~SRSy~~~lvp~~k~~ 376 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLEG-------------------ELD-FWI--LGLLVGTSLGGAQASSRSYLARLVPKGKEG 376 (438)
T ss_pred eeehHHHHHHHHHHHHHHHccc-------------------cHH-HHH--HHHHHHHhcchHHHHHHHHHHHhCCCcccc
Confidence 4566677766666555544331 122 231 225566666666777888999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011918 384 IASTLSGAGLSAANLVASLIMNAVDDIT 411 (475)
Q Consensus 384 ~~~g~~~l~~~ig~~l~~~l~~~~~~~~ 411 (475)
...|+|.++.-.++.+|+.+...+-..+
T Consensus 377 ~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 377 RFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred ceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998876554
No 201
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.25 E-value=0.96 Score=47.92 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
.+.++...++.|+++.... .....+.+..|++.||..+|++.....+|..+++.+...
T Consensus 124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788899987644 345677888999999999999886666666666555443
No 202
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=94.99 E-value=0.83 Score=45.93 Aligned_cols=108 Identities=13% Similarity=0.172 Sum_probs=72.2
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
++..+++.+...+..|+..++. +|.+.| +.+.+|.++.+++.+.. ..
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~-~~--------------------- 84 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLA----RRFGEE-------RSVAAGLLLIAAGILIR-SA--------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHhCch-------HHHHHHHHHHHHHHHHH-Hh---------------------
Confidence 4555666677777777766643 443322 33556666655554332 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+....
T Consensus 85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555667888999988887777777777774 789999999988888988888776554
No 203
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.95 E-value=1.3 Score=46.94 Aligned_cols=81 Identities=15% Similarity=0.003 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+.+++++.++..+..++... + ...|.+.++...++.|++ ....+.++..+.+..|++.||
T Consensus 101 ~v~~~~~ll~~i~~~~~~~a~~-------~----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG 162 (462)
T PRK15034 101 RWTVFSTAILIIPCVWLGIAVQ-------N----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG 162 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------c----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence 4456676666666665554310 0 014677778889999998 557889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 011918 384 IASTLSGAGLSAANLVASL 402 (475)
Q Consensus 384 ~~~g~~~l~~~ig~~l~~~ 402 (475)
+++|++.....+|..++..
T Consensus 163 ~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 163 SALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 9999985433444444433
No 204
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.69 E-value=1.7 Score=44.62 Aligned_cols=89 Identities=10% Similarity=-0.108 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 425 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~k--g~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 425 (475)
.+++....++.+..+....|.....+.+..|++-| +.+.++.....++|..+++.+...+.+.- +|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------ 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------ 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence 34443344555555567788888888877665533 45667778888899999988887764211 33
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011918 426 KGHYDYYYWLLTALSMANFLYYLACCK 452 (475)
Q Consensus 426 ~~~~~~~f~~la~l~~~~~~~~~~~~~ 452 (475)
...|++.+++.++..+..+...|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566666666665554444333
No 205
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.36 E-value=0.0082 Score=64.74 Aligned_cols=151 Identities=12% Similarity=0.023 Sum_probs=3.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh-----h---cCCC---------C---C----ccccccchHHHHH
Q 011918 301 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI-----N---EGIS---------D---D----LRAVVQMSAMWQL 352 (475)
Q Consensus 301 s~~~ki~~G~~l~~ls~~~~~~~~~~----~~~~~~-----~---~g~~---------~---~----~~~~~~vs~~wli 352 (475)
+.++-+++|.++++++.++.++-+.. +..... . .... + + .++......++++
T Consensus 66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 145 (539)
T PF03137_consen 66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI 145 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence 34577999999999999888754432 111100 0 0011 0 0 0111223456677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHH----HHHHHhhhhccc--------CCCCCCCC
Q 011918 353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVA----SLIMNAVDDITK--------RGGNGGWI 420 (475)
Q Consensus 353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~----~~l~~~~~~~~~--------~~~~~~w~ 420 (475)
..-+++|+|..-..+.|.+++.+.++++..++|+|+++....+|-.+| +...+++.+... ...++.|+
T Consensus 146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv 225 (539)
T PF03137_consen 146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV 225 (539)
T ss_dssp ------SSS-----------------------------------------------------------------------
T ss_pred HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence 888999999999999999999999999999999999998776665554 544444332221 11122333
Q ss_pred CCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011918 421 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 457 (475)
Q Consensus 421 ~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~ 457 (475)
... .-=|.+.+++.++..+-+..+=|++.+.
T Consensus 226 GAW------WLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 226 GAW------WLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -------------------------------------
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 210 0113346666666666666666655444
No 206
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.23 E-value=0.5 Score=47.16 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-|..+.+..+++++.|-.+.-++.-.++....|++.++..+++-....++|..+++.+...+-
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 357778899999999999999999999999999988999999999999999999999988654
No 207
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=94.00 E-value=1.4 Score=44.91 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 427 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 427 (475)
.+|++....+.++......+..-.+..+..+++.++.+.+.......+|..+|+.......... +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw-------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ-------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence 4455555555666666777777778888888888888888888777888888886654433111 33
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 011918 428 HYDYYYWLLTALSMANFLYY 447 (475)
Q Consensus 428 ~~~~~f~~la~l~~~~~~~~ 447 (475)
...|++.+++.++..+..
T Consensus 163 --~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 163 --RPAFLLVACVPLASLVCV 180 (390)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 335666777766655554
No 208
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=93.88 E-value=1.2 Score=47.95 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=79.6
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+..+....+..+++.|+-..+. .|..+| +-|..+-++.++..+..++... .|
T Consensus 48 alv~~a~~LP~~Llsl~aG~la----Dr~drr-------rili~~~~~~~~~~~~L~~l~~--------~~--------- 99 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALA----DRFDRR-------RILILSQLLRALVALLLAVLAF--------FG--------- 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcccch-------HHHHHHHHHHHHHHHHHHHHHH--------hC---------
Confidence 5567777788888887766643 322111 2233344444433333333321 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..++|.++..-++.+++..+..|.-.+.+-++.|++.-....++......++..+|+.+++.+-
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3677777788899999999999999999999999999888888888888888888877776543
No 209
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.80 E-value=1.5 Score=44.97 Aligned_cols=56 Identities=5% Similarity=-0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+...++.+++.....|...+++.+..+++ +..+|......++|..+++.++..+.
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhhh
Confidence 345567788888888888877777765543 34555555556677777777766543
No 210
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=93.61 E-value=1.8 Score=46.28 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCch--hhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011918 354 YLVLSGLAMAFNMIGQTEFYYTELPKS--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 431 (475)
Q Consensus 354 ~yvl~~~gEl~~~p~gle~~~~~AP~~--~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 431 (475)
...+..+|--+..|...+++.++-|++ .|+...++++....+|..+++.+...+.+.. +| ..
T Consensus 106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~ 169 (493)
T PRK15462 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AM 169 (493)
T ss_pred HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HH
Confidence 334455665566676678888888875 7888999999988999999998887764211 23 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 011918 432 YYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 432 ~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
-|.+.++.++++.+.++...|++.
T Consensus 170 ~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 170 GFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Confidence 455555555666666655454543
No 211
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.60 E-value=0.42 Score=48.87 Aligned_cols=128 Identities=8% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch---h
Q 011918 305 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---M 381 (475)
Q Consensus 305 ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~---~ 381 (475)
-+.+|.++..+|.+++.+... +. . .....+...+.....++++|.-++-|....+..+|-+++ .
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~------~~-~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI------PP-S------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT------SS-S------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred hhhHHHHHHHHHHHHhHHHHh------cc-h------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 366788888888877554421 00 0 011234555668888999999999999999999997766 3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
+...-..|+....+|..++..+...+++-- + ....|++.++.++++.+.|+...++|++..+..
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~ 133 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPG 133 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S----
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccC
Confidence 444555677888899999877665554210 2 345778888888999999998888988875444
No 212
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=92.35 E-value=2.6 Score=40.83 Aligned_cols=121 Identities=10% Similarity=0.076 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
|..-..+|.++..+++......-. |. ..+.+.|.+.....+.+.|..+.....+--..+.-|+ .
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~---------~~------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVS---------GR------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh---------Cc------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 333456777777777765554321 10 0124444444555666778777777777777788896 6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011918 382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
||...|+--...+++..+=..+...+. ++ +.+.|..+++....+..++.....|...
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 999999988888888877666555443 12 1345667777766655554444444443
No 213
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.16 E-value=2.2 Score=45.64 Aligned_cols=107 Identities=14% Similarity=0.044 Sum_probs=80.7
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+|+.+...+...+..++..++. ++.++| +-+.++.++..++.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~----d~~GRk-------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLG----DRIGRK-------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhhH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5677777776667767666643 333222 33566666666666555543
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 404 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~ 404 (475)
.++++++..-++.|+|=-+.+....-+..+.||++.||.+.++..+...+|-.++-.++
T Consensus 140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999888884333
No 214
>PRK15075 citrate-proton symporter; Provisional
Probab=91.71 E-value=2.9 Score=43.46 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+..++++.+++.+..++...... .......+++..-++.|+++-...|....++.+..|++.|+
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 152 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYAT--------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG 152 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHH--------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch
Confidence 3466677777777666555421000 00001123455568899999988888889999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 384 IASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 384 ~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+++++.....+|..+++.++..+
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 153 FYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877777766666655543
No 215
>PRK09528 lacY galactoside permease; Reviewed
Probab=91.11 E-value=0.22 Score=51.60 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP 112 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~-fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~ 112 (475)
+.++....+.+++.+...+....++.+.++++. +...+.. +..+.++|+.+++.+.+++.+..||+..|.+.
T Consensus 316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL-------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 445555666777777777777777777775432 3334433 55678899999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 011918 113 AVIMLLSALSFF 124 (475)
Q Consensus 113 ~v~~~~~~ivf~ 124 (475)
++..++..++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 777666655544
No 216
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=90.95 E-value=14 Score=40.35 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=67.6
Q ss_pred CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011918 264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 343 (475)
Q Consensus 264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (475)
..|+...+.+..-+..|++.++..-+-|| .-+..|.++..++.++.+-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 35777777777777778887754333222 235667777777776655332
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
++--++-..++.|+|--..... ...+.+..|.+.|....++.....-+....|+.+.+.+.
T Consensus 130 ---~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 ---NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred ---cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 1222456677777775555543 344788889999987776655544444445666665543
No 217
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=90.72 E-value=4.4 Score=43.11 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 404 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~ 404 (475)
+..-++..-++.|+..-+......-+....||++.||.+-.+.-+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3444778889999999999999999999999999999999998888888888886554
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=90.68 E-value=0.46 Score=49.67 Aligned_cols=74 Identities=7% Similarity=-0.018 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCcc
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK 106 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~-~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~ 106 (475)
+.+.+++...+.++|.|..-+...++.+|..|.++.+ ++ ++....|+.+.++.++|..+++.+.+++-+..||.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~-r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGR-RLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456677778899999999999999999998754321 21 23345678899999999999999998877666663
No 219
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=90.63 E-value=0.62 Score=49.58 Aligned_cols=86 Identities=24% Similarity=0.326 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchhHH
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGV 111 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F~i 111 (475)
.+.+++.=.++++..|...+..-++.++..+++ +...+|.+|.+.--..+++||++.+.+.+..| .+++|..
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g-------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG-------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 344666666899999999999999999998764 35899999999999999999999999988776 8899998
Q ss_pred HHHHHHHHHHHHHh
Q 011918 112 PAVIMLLSALSFFL 125 (475)
Q Consensus 112 ~~v~~~~~~ivf~~ 125 (475)
-.+.++++++++..
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887754
No 220
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=90.36 E-value=3 Score=43.58 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHH
Q 011918 355 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW 434 (475)
Q Consensus 355 yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~ 434 (475)
-.+++..+.-..|+|.|+..+..=+...+.-.|+-. ..|...+..+....+...+..+..+|- +... +
T Consensus 366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~---~~gq~f~~~~~~~~~~~~~~~~~~~~~-------~~~~--i 433 (480)
T KOG2563|consen 366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN---LSGQIFGVILVFIMGILAEDLGPPGNT-------FPAN--I 433 (480)
T ss_pred HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE---eehhHHHHHHHHHHHHHhhccCCCCCC-------ccch--h
Confidence 367778888889999999988765555566666543 234444444333322211111111110 1112 2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcCCCCC
Q 011918 435 LLTALSMANFLYYLACCKAYGPFKGRVGT 463 (475)
Q Consensus 435 ~la~l~~~~~~~~~~~~~~y~~~~~~~~~ 463 (475)
.++..+++..++-.++...|+|++.+.+.
T Consensus 434 ~~~~~~~l~~~lva~~r~~y~R~~~e~~~ 462 (480)
T KOG2563|consen 434 FLTVSALLGAILVAFFRPDYRRLRAEAGN 462 (480)
T ss_pred HhHHHHHHHHHHHhhhhhhHHhHhhhhcc
Confidence 34455555566667778888888877754
No 221
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=90.20 E-value=1.5 Score=44.82 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHH
Q 011918 274 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 353 (475)
Q Consensus 274 ~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~ 353 (475)
.=.+-.|+... +-.++++| | -+.+|.+..+++.+..+... +...++.
T Consensus 80 lQ~~sS~~~G~----~SD~yGRk---p----vll~c~~~va~s~ll~~~S~----------------------~F~afv~ 126 (451)
T KOG2615|consen 80 LQFISSPLWGC----LSDRYGRK---P----VLLACLIGVALSYLLWALSR----------------------NFAAFVL 126 (451)
T ss_pred HHHHhhhhhhh----hhhhhCch---H----HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Confidence 33444454444 44555544 2 35667777777666655432 1223455
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011918 354 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 409 (475)
Q Consensus 354 ~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~ 409 (475)
.=++.|+..-.++ ..-+.+.+.++++.|++.|+....+.++|..+|+.++.....
T Consensus 127 aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 127 ARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5667777776666 457889999999999999999999999999999999887654
No 222
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=90.18 E-value=8.2 Score=34.49 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
.+.+.++|.-++.|+|+.+.....-.+..+.+.++.+++..|+++.....+..+|+.+.-.+
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999988888888887765543
No 223
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=89.95 E-value=30 Score=36.92 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchh--
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF-- 109 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F-- 109 (475)
....+.+.-++.++|.|..- .....+..-+++ ++|.++.+++-.+.++|.++++.+++++. .+||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L 184 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence 35566777788999999988 888889988875 35899999999999999999999999854 67886433
Q ss_pred -HHHHHHHHHHHHHH
Q 011918 110 -GVPAVIMLLSALSF 123 (475)
Q Consensus 110 -~i~~v~~~~~~ivf 123 (475)
.++...+.+++++=
T Consensus 185 n~Isl~s~~~a~~~a 199 (511)
T TIGR00806 185 NIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 35555566665553
No 224
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=89.85 E-value=17 Score=37.67 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=68.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011918 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 379 (475)
Q Consensus 300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~ 379 (475)
.+..+-+.+|+.+.+++..+..-... .-++-..+...++++.|=-+.-.++-.++..+.|+
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 34445688898888888765432211 12333455667889999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 380 SMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+-.+.=|.+-....++|..+++.+++..-
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888888888889999999998886544
No 225
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=89.82 E-value=5.5 Score=41.28 Aligned_cols=94 Identities=19% Similarity=0.142 Sum_probs=61.2
Q ss_pred hhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHH
Q 011918 281 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 360 (475)
Q Consensus 281 l~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~ 360 (475)
+..++..|++-++ .+-..|+.+..+++.+||++.++.+ ++++-+..-++.++
T Consensus 73 l~~Kl~aP~fi~~------v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ 124 (402)
T PF02487_consen 73 LLVKLIAPFFIHR------VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASL 124 (402)
T ss_pred HHHHHHhHhhhhh------ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhh
Confidence 4445566665432 4667899999999999998765532 23444455566666
Q ss_pred HHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 361 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 361 gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+--+...+-+++....-+ ...+.|...+|.|+.+|.......
T Consensus 125 ssg~GE~tfL~lt~~y~~-----~~l~~wssGTG~aGl~Ga~~y~~l 166 (402)
T PF02487_consen 125 SSGLGEVTFLSLTHFYGK-----SSLSAWSSGTGGAGLVGALYYLGL 166 (402)
T ss_pred hhhhhHHHHHHHHHhcCc-----cccccccCCcChhhHHHHHHHHHH
Confidence 655555566666554432 356888888999999988765443
No 226
>PRK10429 melibiose:sodium symporter; Provisional
Probab=89.80 E-value=5.1 Score=42.30 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHhHHHHHHHHHHHHH
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLI 403 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~A-P~~~kg~~~g~~~l~~~ig~~l~~~l 403 (475)
..+|.+..|++..++--+..+.-.++..+++ .++.|+...+.-.....+|..+.+.+
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999998899999999999998 58888888886455556665555443
No 227
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=89.77 E-value=4.1 Score=42.87 Aligned_cols=123 Identities=14% Similarity=0.050 Sum_probs=69.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011918 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 379 (475)
Q Consensus 300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~ 379 (475)
.+...|+..++++..+-++...+.-. + + .......+..+..-++.+++..+...+.+.++...-|+
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~-------~------~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~ 137 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK-V-------Q------TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST 137 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee-e-------c------CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH
Confidence 56667899887765555544433211 0 0 00112344445666778888888888888888866654
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCC--CcCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011918 380 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN--INKGHYDYYYWLLTALSMANFLYYLACC 451 (475)
Q Consensus 380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~--ln~~~~~~~f~~la~l~~~~~~~~~~~~ 451 (475)
+++.+....|+++.++..+.-+... . .+++ ..++ ...||.+-+++.++..+.|..+.
T Consensus 138 -----~~~a~~~G~g~aGv~~s~~~ii~~a-~--------~~~~~~~~~~-a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 138 -----YSSAVMSGQGLAGVLTSLAMILVKA-S--------GNDSHGLKKS-ALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred -----HHHHHHhcchhHHHHHHHHHHHHHH-h--------cCCccchhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence 4444555577777776655433321 1 1111 2222 33455555666777777776654
No 228
>PTZ00207 hypothetical protein; Provisional
Probab=89.52 E-value=36 Score=37.27 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HhhhhhheeccCCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~i-a~~~~~~l~~~~g~~~~F~ 110 (475)
+.+.+++...+.++|.|.+-+.......+.|++ +|.....+...+.++|+.+ +++...++.+ +|+..|.
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 567778888888999988888888888888742 4788999999999999975 5655556553 4555555
Q ss_pred HHHHH-HHHHHHHHH
Q 011918 111 VPAVI-MLLSALSFF 124 (475)
Q Consensus 111 i~~v~-~~~~~ivf~ 124 (475)
+.++. .+++++.+.
T Consensus 189 ~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 189 FLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHh
Confidence 44433 333333333
No 229
>PF13347 MFS_2: MFS/sugar transport protein
Probab=89.06 E-value=2.4 Score=43.98 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHhhhhhHhhhhhhccCC---CCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011918 275 LTIWIGLYDRAVLPLASKIKGK---PCQ-LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 350 (475)
Q Consensus 275 iii~~pl~~~~~~p~~~~~~~~---~~~-~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w 350 (475)
+++..++.|.+..|+.-....| +.| .+| =+.+|.++.+++++.+....- ++ ........|
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p--------~~------~~~~~~~~~ 105 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPP--------AG------LSFTAKLVW 105 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhcccc--------ch------hhhhhHHHH
Confidence 4445566666666654332221 101 111 144688888888776654310 00 001246778
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP-~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
+...|++..++--+....-.+...+.+| ++.|....+.-.+...+|+.+.+.+...
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 8899999999999999999999999998 4688888888777777888655554443
No 230
>PRK11462 putative transporter; Provisional
Probab=88.91 E-value=13 Score=39.17 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHHHHhHHHHHHHHHHHHHH
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIM 404 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-~~~kg~~~g~~~l~~~ig~~l~~~l~ 404 (475)
..|....|++..++--+....-.++....++ ++.|+..++.......+|..+++.+.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999988 88999999988888888887776654
No 231
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=87.55 E-value=1.2 Score=45.35 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=61.9
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheeccCCccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
..+.++..-.+.+++.|.+-+....++.++ +++ ++..+...+. .+..+|..+++.++|++.|++|+ ..|.
T Consensus 292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-------~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-------EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 345666677888999999999988888875 332 2455555554 36779999999999999999996 6677
Q ss_pred HHHHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALSFF 124 (475)
Q Consensus 111 i~~v~~~~~~ivf~ 124 (475)
+.++..++++++..
T Consensus 363 ~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 363 FMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666665543
No 232
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=86.88 E-value=8.5 Score=39.12 Aligned_cols=60 Identities=12% Similarity=-0.142 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.|.++....+.+++.....|...+.+.+..+ .++..+|......++|..+|+.++....
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 35555556677788877777776666555533 3455555556666777777777776654
No 233
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=85.32 E-value=0.22 Score=53.77 Aligned_cols=93 Identities=14% Similarity=0.286 Sum_probs=2.6
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------- 101 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------- 101 (475)
....+++|-.++++|..-+-+--.+++-|-.+++ +-.-+..++|..-.+|..+|.++++..-+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~ 212 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPP 212 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccc-------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccc
Confidence 4677888888888888876665555554444332 34567788999999999999888775421
Q ss_pred -----------cCC-ccchhHHHHHHHHHHHHHHHhcCccEe
Q 011918 102 -----------NLG-WKVGFGVPAVIMLLSALSFFLASPFYV 131 (475)
Q Consensus 102 -----------~~g-~~~~F~i~~v~~~~~~ivf~~~~~~~~ 131 (475)
.+| ||+||++.++..++..+.++..-|+++
T Consensus 213 ~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 213 DGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 134 999999999888887777766544443
No 234
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=85.20 E-value=13 Score=39.02 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhh---cCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTE---LPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~---AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.....++.++|..+.....-+.+.+. -|++ +|..++..+...++|+.++..+++...
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455666777777777666665554 4666 888999888888999999887775543
No 235
>PRK09848 glucuronide transporter; Provisional
Probab=84.99 E-value=1.6 Score=45.73 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCcc-----
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK----- 106 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~-~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~----- 106 (475)
.+.+++++.+.++|.|...+...++.+|..++++.+ ++ ++...+++.+-++.++|..+++.+.+.+-+..||.
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~-r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV-RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 456677788899999999999999999987654321 11 23466678899999999999988887765444442
Q ss_pred ---------chh-HHHHHHHHHHHHHH
Q 011918 107 ---------VGF-GVPAVIMLLSALSF 123 (475)
Q Consensus 107 ---------~~F-~i~~v~~~~~~ivf 123 (475)
..+ .+|+++++++++++
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 45667676666655
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=83.64 E-value=28 Score=35.62 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011918 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 379 (475)
Q Consensus 300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~ 379 (475)
+++-+-+..++++.+++..+ |. . .+.+-+...-++.+.|=..+.+..-+++=+.-|+
T Consensus 74 ~g~er~l~~~Llli~~G~~i-------R~------~----------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk 130 (395)
T COG2807 74 FGEERSLFLALLLIAAGILI-------RS------L----------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK 130 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHH-------Hh------c----------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence 46667777777776665432 21 0 2455567778999999999999999999999998
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 380 SMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.- .+||+|..+.++|..+++.+...+.
T Consensus 131 ~~~-~mtglYs~sl~~~aaLaa~lavpla 158 (395)
T COG2807 131 RVG-LMTGLYSTSLGAGAALAAALAVPLA 158 (395)
T ss_pred chh-hHHhHHHHHHHHHHHHHhhhhhHHH
Confidence 875 9999999999999999987765543
No 237
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=83.36 E-value=49 Score=32.98 Aligned_cols=85 Identities=8% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHH
Q 011918 353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY 432 (475)
Q Consensus 353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 432 (475)
....++|++--++.-..--.+..+.|++.-|+.-|....-..+|-.+.+++...+.+.+ + + +. .++.|
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g--~----y~---~le~f 424 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---G--S----YD---NLEAF 424 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---C--c----hh---hHHHH
Confidence 34566777766666666677889999999999999988888888888888877765321 1 1 11 26778
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011918 433 YWLLTALSMANFLYYLA 449 (475)
Q Consensus 433 f~~la~l~~~~~~~~~~ 449 (475)
|.....+++....+.+.
T Consensus 425 fl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 425 FLIIGLMALTSVGILFY 441 (459)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88777777766655443
No 238
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=81.12 E-value=63 Score=34.27 Aligned_cols=46 Identities=7% Similarity=-0.073 Sum_probs=37.9
Q ss_pred HHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 363 AFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 363 l~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
......+++++++.+.++-|+..+|+-..+.+.+..+++.+++...
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445578888999999999999999999988888888888776654
No 239
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=79.78 E-value=3.2 Score=43.04 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC------ccchhHH
Q 011918 38 FAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG------WKVGFGV 111 (475)
Q Consensus 38 ~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g------~~~~F~i 111 (475)
++..+-++..|.+-.....++.+..+++.. .+-+..++..+. -+|..+|.+++|++-|++| |...|.+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~----at~Q~l~~~~~~--Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELR----ATAQGLYSALSF--GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccch----HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 334467888899999999999988876542 234444444333 4889999999999988765 4456777
Q ss_pred HHHHHHHHHHHHHhc
Q 011918 112 PAVIMLLSALSFFLA 126 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~ 126 (475)
+++..++..++|++.
T Consensus 380 ~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 380 FAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777664
No 240
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=79.09 E-value=8.6 Score=40.85 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011918 353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 409 (475)
Q Consensus 353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~ 409 (475)
-.-++.|++--+++....+..+++--+.-+++++|++-...+++..+++.+......
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 334567888888888899999999888999999999999999999999988776553
No 241
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=78.69 E-value=31 Score=36.79 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN 425 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 425 (475)
-+.++.+..-++.|++..-....+...+.+..+++.|+..+.+ ....-.+..++..+...+-. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------ 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------ 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH------
Confidence 4677788888999999999999999999999999999999999 44444444554444443321 44
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 011918 426 KGHYDYYYWLLTALSMANFLYYLAC 450 (475)
Q Consensus 426 ~~~~~~~f~~la~l~~~~~~~~~~~ 450 (475)
..+++..++.+++..+++++.
T Consensus 234 ----r~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcc
Confidence 456677777666665553333
No 242
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=77.20 E-value=35 Score=35.41 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=72.5
Q ss_pred CceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011918 259 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 338 (475)
Q Consensus 259 ~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 338 (475)
++.+.+++...+..+.++.-+. +....-++..|. .+.+-..+++++..+-.+..++...
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gal-lRl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGAL-LRLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHH-HHHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3446677666555555544332 222222333443 3334456677777777776666532
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 339 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 339 ~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
+.|.|+++..=++.|++-.- +..++..+.+-=|++.||..+|++- ...+|..+...+..++.
T Consensus 102 ------~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 102 ------YPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred ------CCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 23345555555666665443 4578889999999999999999988 55566655555554443
No 243
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=75.84 E-value=2.5 Score=45.31 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=64.9
Q ss_pred HHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchhHHHHHHHHH
Q 011918 40 FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLL 118 (475)
Q Consensus 40 L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F~i~~v~~~~ 118 (475)
-+++++..|.+-.+....+.|.... ++..++|.+..++.-++++++|-+++++.+..| |...|..+++.+++
T Consensus 395 ~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 395 SILFGFCVGSFSSLTPVILVDLVGL-------EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 3455555666666666666677654 358999999999999999999999999998887 99999999999999
Q ss_pred HHHHHHhcC
Q 011918 119 SALSFFLAS 127 (475)
Q Consensus 119 ~~ivf~~~~ 127 (475)
+....+.-+
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 997766543
No 244
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=75.38 E-value=43 Score=31.20 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHH
Q 011918 270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 349 (475)
Q Consensus 270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~ 349 (475)
.|.+...+..++..++.++..+|+ .+..++..+++-..++....+....-........+ +........
T Consensus 107 ~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~~ 174 (205)
T PF01891_consen 107 ANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWMALVQ 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHHHHHH
Confidence 566666666666666666655543 22344555555555555544433322111111100 001223444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011918 350 WQLPYLVLSGLAMAFNMIGQTEFYYTELPK 379 (475)
Q Consensus 350 wli~~yvl~~~gEl~~~p~gle~~~~~AP~ 379 (475)
...+.++++++.|.++.-....+..+.-|+
T Consensus 175 ~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 175 AYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 466888999999999999999998888875
No 245
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=73.93 E-value=47 Score=34.77 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHH
Q 011918 308 IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 372 (475)
Q Consensus 308 ~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~ 372 (475)
-|+++.++.|+...+.|...+. +++ + .||++.|++-++.+-..+++
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~---------------~iH--p--iQY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKL---------------RIH--P--IQYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---------------ccc--H--HHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999874321 122 2 56777777766666555554
No 246
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=73.48 E-value=0.091 Score=54.81 Aligned_cols=61 Identities=20% Similarity=0.063 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+.++++..-++.|++=-...+....++.+.+|++.|+.+.+++.....+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6677778889999999999999999999999999999999999999999998887765444
No 247
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=73.16 E-value=82 Score=33.42 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.+..|-...|++++++--++...--+......+ .+.|....+.++....+|+.+...+...+.. ++.++
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~---------~~g~~- 179 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK---------LFGGG- 179 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCC-
Confidence 667777788999999999988888888887744 4678889999999999998887776644331 12111
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcC
Q 011918 425 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 459 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~ 459 (475)
.+...|+....+++++..+.++.+.+..|.|..
T Consensus 180 --~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 180 --DKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 112345666667777777777778777666665
No 248
>PRK11715 inner membrane protein; Provisional
Probab=71.55 E-value=50 Score=34.66 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHH-----------Hhhh
Q 011918 308 IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF-----------YYTE 376 (475)
Q Consensus 308 ~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~-----------~~~~ 376 (475)
-|+++.++.|+...+.|...+ ..+-+ .||++.|++-++.+-..+++ +++.
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~-----------------~~iHp--iQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~ 366 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK-----------------LRIHP--VQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAAL 366 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----------------ceecH--HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 488899999999998886321 12222 67777777777766666554 3344
Q ss_pred cCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011918 377 LPKSMSSIASTLSGAGLSAANLVASLIMNA 406 (475)
Q Consensus 377 AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~ 406 (475)
|...+-|.|.+.-.=..-.|..+++.+..+
T Consensus 367 a~v~li~~Y~~~vl~~~k~g~~~~~~L~~L 396 (436)
T PRK11715 367 ACVLLIGFYLSAVLRSWKRGLLFAAALAAL 396 (436)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 555555555554444344444444444433
No 249
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=71.32 E-value=7.1 Score=35.05 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011918 429 YDYYYWLLTALSMANFLYYLACCKAYGPF 457 (475)
Q Consensus 429 ~~~~f~~la~l~~~~~~~~~~~~~~y~~~ 457 (475)
+..-+.++.+++.+.+++|++-..|.+|+
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33445566777777777777666666653
No 250
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=68.41 E-value=1.2e+02 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH---HHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI---ASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~---~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+...++.+++.....+.+-.++.+..| +.++. .+...+...++|..+|+.++....
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3335688899999999999999998877 33333 444444445677777777776544
No 251
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=68.38 E-value=11 Score=37.32 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC---ccchhH
Q 011918 34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFG 110 (475)
Q Consensus 34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g---~~~~F~ 110 (475)
..-|+++.++++.....-...-++++...++ +|+..+|...|-.-|+|-.+.+++++.+.+..| |--+|.
T Consensus 353 lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 353 LSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 3346788888888888777788888887765 368999999999999999999999999988755 444566
Q ss_pred HHHHHHHHHHHH
Q 011918 111 VPAVIMLLSALS 122 (475)
Q Consensus 111 i~~v~~~~~~iv 122 (475)
+....|.+..+.
T Consensus 426 l~~~~~aL~svg 437 (459)
T KOG4686|consen 426 LIIGLMALTSVG 437 (459)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 252
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.28 E-value=1.6e+02 Score=29.83 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcc-----cCCCCCCCCC
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT-----KRGGNGGWIP 421 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~-----~~~~~~~w~~ 421 (475)
|+-.+... +.+++.+...+++-+-|.++.=|.-++++ |+..+++.++=.++. +.+-.. ..+..+..+|
T Consensus 112 S~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~af-----FvG~GLSaLlPslla-LaQGtg~~~C~~n~t~~r~fP 184 (439)
T KOG4255|consen 112 SWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNAF-----FVGMGLSALLPSLLA-LAQGTGRLECDLNGTPGRPFP 184 (439)
T ss_pred hHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHHH-----HHhccHHHHHHHHHH-HHccCCceeecCCCCCCCCCC
Confidence 44444444 67789999999999999999988766654 444566555544333 332110 0011112233
Q ss_pred CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011918 422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
.+.. ...||+++.+++..+...|..+.|.-.
T Consensus 185 ~rFs---~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 185 PRFS---VSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred CCcc---HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3322 446888888888888888877766543
No 253
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=64.37 E-value=1.9e+02 Score=30.24 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+++|+-...++.|++-.. -..-+++++...|++.-=.+.+.--.+.-+|..+|+.++++.-
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666555666666544 4566788888877766667777777777778888888887754
No 254
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=60.10 E-value=1.1e+02 Score=30.75 Aligned_cols=106 Identities=10% Similarity=-0.034 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc----c--
Q 011918 270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA----V-- 343 (475)
Q Consensus 270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~----~-- 343 (475)
.|.+...+..++..+++|+..+|.. ++..+.+..+++-..++....++.-.-.....+. -..|..+. .
T Consensus 108 aN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~-~~~~~~g~~~~~~~~ 181 (322)
T PRK07331 108 ANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPL-LFKDASGLPLYSPYP 181 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCccccccch
Confidence 3555444445666777777666532 2333444445555555555444332211111000 00010000 1
Q ss_pred ccchHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhcCchh
Q 011918 344 VQMSAMWQLPYLVLS-GLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 344 ~~vs~~wli~~yvl~-~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
..+++.-+.+..+.+ ++.|-++......|+.+..|+-.
T Consensus 182 ~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 182 LSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 112333456677776 99999999999999999888765
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=59.30 E-value=2.5e+02 Score=29.94 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=39.9
Q ss_pred HHHHHHHhhHH----HHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 359 GLAMAFNMIGQ----TEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 359 ~~gEl~~~p~g----le~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-.+|++.+..- -+|+.+....+.-.+..++..+...+|..+|+.+...+.
T Consensus 136 v~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 136 VMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666655544 478999888888889999999999999999998887765
No 256
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=55.93 E-value=43 Score=35.64 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--
Q 011918 303 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS-- 380 (475)
Q Consensus 303 ~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~-- 380 (475)
.+-+.+|-++.+++-++++..+. .+...+....+++++|--++-|...++..++=|+.
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp 151 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP 151 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence 34588899999998887765420 12333557778888999999888888888864332
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 381 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 381 ~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
.|....++++....+|+++++.+...+.. +.+ ...-|.+-++-+.+.++.|++..|+++...
T Consensus 152 rrD~gFt~fY~~iNiGsl~~p~i~~~~~~-------------~~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 152 RRDGGFTLFYMGINIGSLIAPIITGLLAI-------------NYG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccCCCccEEEEEeehHHHHHHHHHHHHHH-------------hhC---HHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 15566777888889999999998877652 111 234566666677777788887777776544
No 257
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=55.67 E-value=16 Score=35.15 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 011918 395 AANLVASLIMNA 406 (475)
Q Consensus 395 ig~~l~~~l~~~ 406 (475)
+|..+|+.++..
T Consensus 17 lg~~iGg~~G~~ 28 (248)
T PF11368_consen 17 LGGLIGGFIGFF 28 (248)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 258
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=55.53 E-value=1.2e+02 Score=31.69 Aligned_cols=24 Identities=13% Similarity=-0.103 Sum_probs=19.3
Q ss_pred CccchhhHHHHHHHHHhhhhhHhh
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLP 288 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p 288 (475)
+.+.+.|++.-++++|++..+..+
T Consensus 46 G~i~s~~~~~~l~~qp~~G~i~Dk 69 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGFISDK 69 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhcch
Confidence 567888999999999988876443
No 259
>PF14007 YtpI: YtpI-like protein
Probab=55.23 E-value=18 Score=29.06 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=45.7
Q ss_pred ccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHhcCccEeecCC
Q 011918 60 EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA 135 (475)
Q Consensus 60 dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p 135 (475)
++++..|| .++...-==..|.+|.++.....--.-- .+=...+.++++.+++++...+.|.|.|+|-.|
T Consensus 18 k~~Rs~~p------~~k~~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 18 KYFRSKDP------MEKKWYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHhhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 34555554 3444433456677888877554332222 233688999999999999999999888877655
No 260
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=54.64 E-value=2.1e+02 Score=27.75 Aligned_cols=32 Identities=3% Similarity=0.093 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE 376 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~ 376 (475)
+++-+.-....+++++|=+|-.|..+-+..+.
T Consensus 150 ~i~~Y~~fv~~~~l~fGl~FelPli~~~L~~~ 181 (258)
T PRK10921 150 DIASYLSFVMALFMAFGVSFEVPVAIVLLCWM 181 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444445677788888888888777764
No 261
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=50.20 E-value=2.1e+02 Score=29.73 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcc
Q 011918 349 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 428 (475)
Q Consensus 349 ~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~ 428 (475)
+..+..-++.+++.....-.-+-.+...-|+-.++.+.| .++++.+.+++.-+..... +|-+++
T Consensus 118 ~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~----------~~~~~s- 181 (406)
T KOG1479|consen 118 LVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAF----------SDSRTS- 181 (406)
T ss_pred HHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhc----------CCCCce-
Confidence 334455567777777766666666666655555555544 5555555555443333221 122223
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 011918 429 YDYYYWLLTALSMANFLYYLA 449 (475)
Q Consensus 429 ~~~~f~~la~l~~~~~~~~~~ 449 (475)
...||.+-.++.++..+.|..
T Consensus 182 A~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 182 ALIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 234565555666667777763
No 262
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.23 E-value=20 Score=30.53 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 432 YYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 432 ~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
.|.++|++.++.+++++++ +|.+|+.
T Consensus 70 i~gv~aGvIg~Illi~y~i-rR~~Kk~ 95 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCI-RRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHS---
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhccC
Confidence 3444444433333444444 4444443
No 263
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=48.52 E-value=22 Score=27.95 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 435 LLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 435 ~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
.+.++.+++.+++....+.|++..++.
T Consensus 11 aliv~~iiaIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 11 ALIVALIIAIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp HHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777665554
No 264
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=48.25 E-value=94 Score=30.14 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=35.2
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 379 KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454 (475)
Q Consensus 379 ~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y 454 (475)
.-+|...+|+-.+.++..|.+.+....-+ +|+..+-........-.+-.++.+++..+|.++...-
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grf----------GlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRF----------GLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhc----------eeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 45677777777777887777777665433 3442111111111222334455666677776655544
No 265
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=46.24 E-value=46 Score=35.26 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=79.6
Q ss_pred eecCCccchhhHHHH---HHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011918 261 EIPSGSFNIFAILTL---TIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 337 (475)
Q Consensus 261 ~ip~~~~~~~n~l~i---ii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~ 337 (475)
+.|+...+.+|...- ++-+-++.++ -.+.++| +-++.-++++.+|-++.+.- .+
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~l----gD~~GRK-------~vYG~~liImIi~t~~~~~s----------~~-- 136 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWL----GDKFGRK-------KVYGKELIIMIICSALSGLS----------VG-- 136 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH----Hhhhcch-------hhhhHHHHHHHHHHHHhccC----------CC--
Confidence 378888888887763 3444444443 3333322 23455555555554422221 11
Q ss_pred CCccccccc-hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 338 DDLRAVVQM-SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 338 ~~~~~~~~v-s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
...+. =.+|+...=.++|+|=-==+|.+-...+..|-++-||..+++.+..+++|-+.|+.+.-++-
T Consensus 137 ----~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 137 ----TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS 204 (538)
T ss_pred ----CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence 11222 24566677789999877778999999999999999999999999999999888877665543
No 266
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=45.94 E-value=4.1e+02 Score=28.50 Aligned_cols=31 Identities=3% Similarity=0.181 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011918 72 GALQSYFSWYYVFVSASSIVAVTCIVYIQDN 102 (475)
Q Consensus 72 ~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~ 102 (475)
++-.|+|..|+.+.|++.+++..+..++.++
T Consensus 180 ~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 180 EEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999988764
No 267
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=44.07 E-value=38 Score=24.06 Aligned_cols=18 Identities=28% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHhhhcCCCcCCCC
Q 011918 445 LYYLACCKAYGPFKGRVG 462 (475)
Q Consensus 445 ~~~~~~~~~y~~~~~~~~ 462 (475)
+...-.+|+|.+|.+-+.
T Consensus 18 ~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 18 LSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHhhccccccccCC
Confidence 444567788888775553
No 268
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=2.8e+02 Score=25.89 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHH---HhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCC
Q 011918 344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEF---YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 420 (475)
Q Consensus 344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~---~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~ 420 (475)
.+...|++.-.+++++++-++.....+.+ .-+..--+|.|.+++++.+..-+|-.+=+ . +|=
T Consensus 72 ips~~~~~a~f~vlla~~Lill~i~~~~l~~~c~~~si~~~cg~~q~~a~l~milGc~lyP---------~------GW~ 136 (207)
T KOG4026|consen 72 IPSNEFKLAAFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMILGCALYP---------D------GWD 136 (207)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHhcC---------C------ccC
Confidence 34455555556666666665533333333 22345566777777777654444443321 1 443
Q ss_pred CC-------------CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCCCcc
Q 011918 421 PS-------------NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGME 472 (475)
Q Consensus 421 ~~-------------~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 472 (475)
.+ ++.+....+-| .+|++.++..++.-.++-....|+.+.-.+++-++|-+
T Consensus 137 s~~vr~~CG~~a~ky~lG~CsIgWaY-~lAIig~~daliL~~lsf~l~~k~~~~~p~~~~~~g~~ 200 (207)
T KOG4026|consen 137 SPEVRRMCGAKAGKYYLGDCSIGWAY-YLAIIGILDALILAFLSFVLGTKQQRLLPEESKAEGKG 200 (207)
T ss_pred CHHHHHHhccccCCccCccccccHHH-HHHHHHHHHHHHHHHHHHHhccCCCCcccchhhhcCCc
Confidence 22 33444444433 36677766666666666666655555434444444433
No 269
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=43.30 E-value=32 Score=35.86 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-CccchhHHHHHH
Q 011918 37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVI 115 (475)
Q Consensus 37 ~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-g~~~~F~i~~v~ 115 (475)
++.=.++++..|+..+..-++.++..++++ -.++|.+|-..--..+++||.+.+.+-+.. +-++++..-.+.
T Consensus 345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k-------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 345 WILGLLVGTSLGGAQASSRSYLARLVPKGK-------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCcc-------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 333368899999999999999999998764 478999999999999999999988776544 456777777777
Q ss_pred HHHHHHHHHh
Q 011918 116 MLLSALSFFL 125 (475)
Q Consensus 116 ~~~~~ivf~~ 125 (475)
+.+++++++.
T Consensus 418 l~iGl~~L~~ 427 (438)
T COG2270 418 LLIGLLLLLR 427 (438)
T ss_pred HHhhHhhEEe
Confidence 7777766543
No 270
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=42.62 E-value=1.1e+02 Score=30.90 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhh------heeccCCccchhHHHHHHHHHHHHHH
Q 011918 81 YYVFVSASSIVAVTCIV------YIQDNLGWKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 81 fY~~iNiG~~ia~~~~~------~l~~~~g~~~~F~i~~v~~~~~~ivf 123 (475)
++..+-+|-+++..+++ ++.++ |+...+.-.....++-.++|
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy 58 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVY 58 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHH
Confidence 45566667666655543 45555 76666665555554444433
No 271
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=42.34 E-value=27 Score=34.66 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=23.3
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 424 INKGHYDYYYWLLTALSMANFLYYLACCKAY 454 (475)
Q Consensus 424 ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y 454 (475)
.++..+...+.+++++-+++...+.++.|..
T Consensus 333 kcwisl~i~~iLl~aLQlvniyWl~lIvRva 363 (395)
T COG5058 333 KCWISLPIVFILLQALQLVNIYWLFLIVRVA 363 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577788899999999998777776643
No 272
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=42.25 E-value=1.4e+02 Score=31.75 Aligned_cols=166 Identities=13% Similarity=-0.013 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCC
Q 011918 220 KALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPC 298 (475)
Q Consensus 220 k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~ 298 (475)
.+++++..+..+.-+.|....+ .+-+ .|..-.++.. .+..+-..|++-++.+|+........-.|.++|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPy-l~~lGvphk~-------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR-- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPY-LQSLGVPHKW-------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR-- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHH-HHHcCCCccc-------ccccccccccccceecccccccccccccccccc--
Confidence 4555666677778888988777 5554 3333333222 234556778888999999888766655555443
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc-cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-
Q 011918 299 QLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA-VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE- 376 (475)
Q Consensus 299 ~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~- 376 (475)
+| =|..|-++.+++++......- ... -+-|+... ..+..+-..+..+.++=++-=+..-..=++..++
T Consensus 102 --RP--fI~~~s~~i~~~l~Lig~aaD----ig~--~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~ 171 (498)
T KOG0637|consen 102 --RP--FILAGSLLIAVSLFLIGYAAD----IGL--LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA 171 (498)
T ss_pred --cc--hHHHhhHHHHHHHhhhhhHhh----hhH--HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence 22 256666677777665544321 100 02233222 2234455555666666666544455555666676
Q ss_pred cCchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 011918 377 LPKSMSSIASTLSGAGLSAANLVASLIMN 405 (475)
Q Consensus 377 AP~~~kg~~~g~~~l~~~ig~~l~~~l~~ 405 (475)
+|+..+.+..+.+-+..++||.+|=.++.
T Consensus 172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 172 RGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cChhhhhccchhHHHHHHhcceeeeeccc
Confidence 45555545899999999999999865543
No 273
>PRK08319 cobalt transport protein CbiM; Validated
Probab=41.98 E-value=2.6e+02 Score=26.47 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCchhh
Q 011918 352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 382 (475)
Q Consensus 352 i~~yvl~~~gEl~~~p~gle~~~~~AP~~~k 382 (475)
.++++.++++|.++.-....+..+.-|+-.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 4566789999999999999999999998765
No 274
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=41.79 E-value=49 Score=34.28 Aligned_cols=59 Identities=5% Similarity=-0.076 Sum_probs=45.6
Q ss_pred ccchHH-HHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHH
Q 011918 344 VQMSAM-WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASL 402 (475)
Q Consensus 344 ~~vs~~-wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~ 402 (475)
.+...+ ..+.+|.+.+.----....+++|.++.||+...|++|.+-.-...+|...=..
T Consensus 364 ~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~t 423 (510)
T KOG3574|consen 364 FPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGT 423 (510)
T ss_pred eeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHH
Confidence 344333 34568899888888889999999999999999999999887666666544333
No 275
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=41.24 E-value=4.7e+02 Score=27.85 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHH-HHHHHHHHHHHh
Q 011918 353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLS-AANLVASLIMNA 406 (475)
Q Consensus 353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~-ig~~l~~~l~~~ 406 (475)
.|.++.-.++--..=..-|..+..-++..|...-++.=...+ +|-..|+.+.+.
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~ 435 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG 435 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence 366777777877888889999999999998888887665444 555556554443
No 276
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=38.84 E-value=10 Score=37.74 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHH
Q 011918 356 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 435 (475)
Q Consensus 356 vl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~ 435 (475)
++.+++-.+.-...+.++...-|+.+++.+.| .++++.+..++.- +.. +..++.+.+ ...||.+
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G-----q~~aGv~~s~l~i-i~~---------~~~~~~~~~-a~~yF~~ 68 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG-----QGLAGVIVSLLRI-ITK---------ASGSDVKTS-AFIYFII 68 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh-----ccHHHHHHHHHHH-HHH---------Hhhhccchh-hhhHHHH
Confidence 44566666666677777777666555544444 5666555443322 221 111222222 2235554
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011918 436 LTALSMANFLYYLACCK 452 (475)
Q Consensus 436 la~l~~~~~~~~~~~~~ 452 (475)
-.++.++..+.|..+.|
T Consensus 69 a~~i~i~~~~~~~~l~~ 85 (309)
T PF01733_consen 69 AVLIVILCIILYFILPR 85 (309)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45556666666665554
No 277
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=36.53 E-value=3e+02 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 429 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 429 ~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
..+||++.+..-++..+..++.-|..+.|-.++
T Consensus 201 ~~N~yF~~aSt~~l~~v~~~vt~kivePrl~~~ 233 (502)
T PF03806_consen 201 LMNYYFMIASTFVLTIVGTWVTEKIVEPRLGKY 233 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence 566777777777777777777777776554444
No 278
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=36.30 E-value=59 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHhcCccEe
Q 011918 74 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV 131 (475)
Q Consensus 74 ~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~~~~~~~ 131 (475)
.+..-.++...+-+++++|. ++||+.+++ +..+.+-+++.++++++.+=-.+.|+
T Consensus 6 Q~~ae~l~~~il~~~~iisf-i~Gy~~q~~--~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 6 QRLAEKLMQYILIISAIISF-IVGYITQSF--SYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 45566777888889999886 667776654 57777777788888877765555554
No 279
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.76 E-value=74 Score=32.08 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
+.+..|++...++ +..+.--..+-+=|..|| .|+|+++.+.|++++.+++..+
T Consensus 185 p~~~~~~vl~~~f-------vl~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 185 PRPLMWQVLGVLF-------VLVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred CCchhHHHHHHHH-------HHHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 5666666544333 222222223456788888 8999999988888887766554
No 280
>PF15069 FAM163: FAM163 family
Probab=34.29 E-value=48 Score=28.98 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q 011918 437 TALSMANFLYYLACC 451 (475)
Q Consensus 437 a~l~~~~~~~~~~~~ 451 (475)
..|++++.+.|-.+-
T Consensus 17 ILLcIIaVLCYCRLQ 31 (143)
T PF15069_consen 17 ILLCIIAVLCYCRLQ 31 (143)
T ss_pred HHHHHHHHHHHHhhH
Confidence 345555555555433
No 281
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=34.15 E-value=2.3e+02 Score=29.57 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=23.1
Q ss_pred HHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 011918 275 LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 317 (475)
Q Consensus 275 iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~ 317 (475)
=+++.|++|.+- .+|.+++ +.==.+....+|.++..+|.
T Consensus 80 KllWaPiVDs~y---~k~~Grr-ksWvvp~q~llG~~mllLs~ 118 (510)
T KOG3574|consen 80 KLLWAPIVDSVY---SKRFGRR-KSWVVPCQYLLGLFMLLLSY 118 (510)
T ss_pred HHHHHhhhHHHH---HHhhccc-cceeeehHHHHHHHHHHHhh
Confidence 478889999753 2333332 22234556777877666654
No 282
>PF15050 SCIMP: SCIMP protein
Probab=34.07 E-value=38 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=15.7
Q ss_pred hHHHHHHHHHH-----HHHHHHHHHHhhhcCCCcCCC
Q 011918 430 DYYYWLLTALS-----MANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 430 ~~~f~~la~l~-----~~~~~~~~~~~~~y~~~~~~~ 461 (475)
++||.++|+.. .+++++|.++.+.+++-+.-+
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkwe 42 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWE 42 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccce
Confidence 45777766422 233445555555544444444
No 283
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=33.38 E-value=95 Score=28.68 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHhhhhhheec--cCCccchh
Q 011918 33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSIVAVTCIVYIQD--NLGWKVGF 109 (475)
Q Consensus 33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~-~iNiG~~ia~~~~~~l~~--~~g~~~~F 109 (475)
...+.+...+.+++.|...|...++.++.+++ . .++...+.+... ..++|..+++.+.+.+.. ..+|+..|
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34455555557788888999999999999876 2 246777777777 578888888766655543 35777755
Q ss_pred HHHHHHH
Q 011918 110 GVPAVIM 116 (475)
Q Consensus 110 ~i~~v~~ 116 (475)
.+.....
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 5544433
No 284
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=33.20 E-value=78 Score=33.62 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHhhccccc--------ccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 40 FGLMSLGSGGIR--------SSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 40 L~li~lG~G~~k--------p~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
..++..|.|+|- .-+.++.+..|-..+.++. +--...=+.-+..-|+|-++|-+.-|+++|.+|=.-.++.
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g-~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~ 119 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGG-HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGK 119 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhH
Confidence 345556666654 2456667777766653210 1122333455888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 011918 112 PAVIMLLSALSFFLASPF 129 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~ 129 (475)
..+.|+++.+ .++..+
T Consensus 120 ~liImIi~t~--~~~~s~ 135 (538)
T KOG0252|consen 120 ELIIMIICSA--LSGLSV 135 (538)
T ss_pred HHHHHHHHHH--HhccCC
Confidence 9999999987 444433
No 285
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.38 E-value=3e+02 Score=23.00 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=16.7
Q ss_pred cCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011918 377 LPKSMSSIASTLSGAGLSAANLVASLIM 404 (475)
Q Consensus 377 AP~~~kg~~~g~~~l~~~ig~~l~~~l~ 404 (475)
+-++.|+..+++-...--++..+.+...
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~i 62 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGI 62 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4456777777776665555555544433
No 286
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=31.67 E-value=2.3e+02 Score=23.94 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcC
Q 011918 380 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 459 (475)
Q Consensus 380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~ 459 (475)
..|+.+.++.++..|..-.+.+.+.. +.... .+.. -.+-++++++++++-++.+..++...-|..+
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~-~~~i~-~~~~------------~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~ 105 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLF-FGHID-GDRD------------RGWALLILGILCFIPGFYHTRIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccC-CCCc------------ccchHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 47888888888877766555554432 22111 1111 2235788999999999988888776655555
Q ss_pred CC
Q 011918 460 RV 461 (475)
Q Consensus 460 ~~ 461 (475)
..
T Consensus 106 Gy 107 (115)
T PF05915_consen 106 GY 107 (115)
T ss_pred CC
Confidence 44
No 287
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.34 E-value=3.6e+02 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNM 366 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~ 366 (475)
.++.|++.. +++-+.|++..
T Consensus 4 ~~~~wli~g-~~ll~~E~l~~ 23 (140)
T COG1585 4 GAWIWLILG-LLLLIAEILGP 23 (140)
T ss_pred hhHHHHHHH-HHHHHHHHhcc
Confidence 467787777 66667787763
No 288
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=31.07 E-value=4.5e+02 Score=24.67 Aligned_cols=99 Identities=12% Similarity=-0.068 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccch--
Q 011918 270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS-- 347 (475)
Q Consensus 270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs-- 347 (475)
.|.+...+..++..+.+++..+|.+. +....-+..|.+-..++.+..++ |.-. ..+. + ......+
T Consensus 110 ~N~l~m~~~~~~~~~~~~~~~~~~~l----~~~v~~f~~gf~~~~l~~~~~~~-~l~l-----~~~~--~-~~~~~~~~~ 176 (214)
T TIGR00123 110 ANGFSMGVIGPFVGWIVYKLACRAGL----RRDVAVFLAAMLGDLATYVVTSV-QLAL-----AFPI--P-HAGFTGSVV 176 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHH-HHHH-----hCCC--c-ccchHHHHH
Confidence 46666666666777777777765321 12233333344433333333222 1110 0000 0 0000111
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 348 --AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 348 --~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
.....+..+.+++.|-.+......+..+..|+-.
T Consensus 177 ~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 177 KFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 3344466678899999999999999999998754
No 289
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=30.87 E-value=10 Score=39.28 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred cccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHH
Q 011918 49 GIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 122 (475)
Q Consensus 49 ~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~iv 122 (475)
+.-+....+.++.|+.+ .|..+..+.+...++|+++++.+.+++.++.+-...|.+-++.++++.++
T Consensus 365 g~~~~~~~~~~ElfPt~-------~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTK-------VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 45566667888888653 48899999999999999999999999888877455666655555555543
No 290
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=28.16 E-value=2.6e+02 Score=25.60 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHHHHhH-HHHHHHHHHHHHHHhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGA-GLSAANLVASLIMNAV 407 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~-~~kg~~~g~~~l-~~~ig~~l~~~l~~~~ 407 (475)
+.++++...++.+++.....|.....+.+..|+ ..++...+.... ...+|..+++.+....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666778999999999999999999998 677888887777 4667777777555444
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=27.91 E-value=7.8e+02 Score=26.43 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhHHH----HHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011918 356 VLSGLAMAFNMIGQT----EFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 409 (475)
Q Consensus 356 vl~~~gEl~~~p~gl----e~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~ 409 (475)
++--++|+.-+..-. .|+.++.-.+.-.+..+++.+...++.++++.+.....+
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445577877766554 778888888888999999999999999999988776653
No 292
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=26.94 E-value=2.7e+02 Score=29.93 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=47.6
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHH
Q 011918 344 VQMSAMW-QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS 401 (475)
Q Consensus 344 ~~vs~~w-li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~ 401 (475)
.+.+.+. .+.+|++.++.--..++..++|.++.|-+..-|+||-+..-...+|+----
T Consensus 400 v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~ 458 (544)
T PF13000_consen 400 VPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPR 458 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchH
Confidence 3444443 468999999999999999999999999999999999998877777764443
No 293
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=25.93 E-value=8.4e+02 Score=26.11 Aligned_cols=292 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhheec---------cCCccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChh
Q 011918 71 KGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP 141 (475)
Q Consensus 71 ~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------~~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~ 141 (475)
.++-.++|..+..+-|+|.++|..++.++.+ ...|...+......++++.++.....++..+.........
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~ 254 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY 254 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Q ss_pred hHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q 011918 142 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKA 221 (475)
Q Consensus 142 ~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~ 221 (475)
...+++..+.+..+ -.|..|-
T Consensus 255 -------~~~~~~kk~k~k~s----------------------------------------------------~~es~k~ 275 (491)
T PF03219_consen 255 -------PSAKKKKKKKPKMS----------------------------------------------------LKESFKL 275 (491)
T ss_pred -------hhhhcccccCCCcc----------------------------------------------------HHHHHHH
Q ss_pred HH---HHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCC
Q 011918 222 LI---KVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKP 297 (475)
Q Consensus 222 ~l---~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~ 297 (475)
++ -+..+.+.++.|.++.+- ...|-.|....-.+-. --.+.+..++..+-++-+.+. .+-..+.||.+.+
T Consensus 276 l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~----~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~- 349 (491)
T PF03219_consen 276 LLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPN----DYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWR- 349 (491)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH-
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 011918 298 CQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE-GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE 376 (475)
Q Consensus 298 ~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~ 376 (475)
....=.-+-++..++.++.+.+.+.........- | .++-.+.++.=..|.++.=.++--..=..=|+++-.
T Consensus 350 ---~~AlitPiv~lit~~~FF~~~~f~~~~~~~~~~~~~-----~~pl~lav~~G~i~~v~~K~~kYs~fd~~kEm~yip 421 (491)
T PF03219_consen 350 ---TAALITPIVILITGLLFFGFILFNNSLGPIVASLFG-----TSPLMLAVFFGAIQNVLSKSAKYSLFDPTKEMAYIP 421 (491)
T ss_pred ---HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhc-----cchHHHHHHHHHHHHHHHhhcceeecchhhhhhccc
Q ss_pred cCchhhhHHHHHHhHHHH-HHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHH---------HHHHHHHHHHHHH
Q 011918 377 LPKSMSSIASTLSGAGLS-AANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYY---------WLLTALSMANFLY 446 (475)
Q Consensus 377 AP~~~kg~~~g~~~l~~~-ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f---------~~la~l~~~~~~~ 446 (475)
-+++.|...-+..=...+ +|-..|+.+... +...+ ..++++.++..+.
T Consensus 422 ld~e~k~k~Ka~iD~~~~r~GKs~gs~~~~~----------------------l~~~~~~~~~~~~~~~~~~i~~~i~~~ 479 (491)
T PF03219_consen 422 LDPESKYKGKAAIDVVGSRLGKSGGSLIQQG----------------------LLSLFPSGSIRASTPYLAVILIIIIIL 479 (491)
T ss_pred CCHHHHhhcceeeeeeccchhhHHHHHHHHH----------------------HHHHhcccchhhhHHHHHHHHHHHHHH
Q ss_pred HHHHhhhcCCC
Q 011918 447 YLACCKAYGPF 457 (475)
Q Consensus 447 ~~~~~~~y~~~ 457 (475)
+....+.+.++
T Consensus 480 Wi~~v~~L~~~ 490 (491)
T PF03219_consen 480 WIYAVIYLNKQ 490 (491)
T ss_pred HHHHHHHHhcc
No 294
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=25.83 E-value=5.8e+02 Score=24.25 Aligned_cols=35 Identities=11% Similarity=-0.103 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhcCchh
Q 011918 347 SAMWQLPYLVLS-GLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 347 s~~wli~~yvl~-~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
+.--+++..+.+ ++.|-++.....+++.+..|+.+
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~ 217 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENL 217 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 455566777887 99999999999999998855544
No 295
>PRK06265 cobalt transport protein CbiM; Validated
Probab=25.38 E-value=5.4e+02 Score=23.73 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH--HHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW--QLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 381 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w--li~~yvl~~~gEl~~~p~gle~~~~~AP~~~ 381 (475)
.+...|++-..++....++.-.-....+ | ..+....+ .++.++.+++.|.++......+..+.-|+-.
T Consensus 128 ~~~~~~f~~~~l~v~~~~l~~~~~l~l~---~-------~~~~~~~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l 197 (199)
T PRK06265 128 PRGLAAFLAGALAVFLAALLCALELALS---G-------GFPFVPAAKLLGLAHLPLMVIEGIITAFAVSFLARVRPELL 197 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc
Confidence 5566677777777665554432211110 1 01112222 2245566777799999999999999888755
Q ss_pred h
Q 011918 382 S 382 (475)
Q Consensus 382 k 382 (475)
+
T Consensus 198 ~ 198 (199)
T PRK06265 198 K 198 (199)
T ss_pred c
Confidence 4
No 296
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.16 E-value=8.1e+02 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 011918 217 EELKALIKVIPIWSTGIMIAVTISQ 241 (475)
Q Consensus 217 e~~k~~l~~l~l~~~~~~f~~~~~Q 241 (475)
++-.++++.+...++.+.+|.++.+
T Consensus 778 ~QslrL~r~~l~l~~l~~l~~iWsd 802 (1109)
T PRK10929 778 AQSLRLVRSILTLIALLSVIVLWSE 802 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776666666666667776
No 297
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.97 E-value=1.3e+02 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcCCC-CCCCCCCCC
Q 011918 434 WLLTALSMANFLYYLACCKAYGPFKGRV-GTAFDDKDG 470 (475)
Q Consensus 434 ~~la~l~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~ 470 (475)
.+.++++++.+..+.+..||.+.|.+|. ++|-+|..|
T Consensus 42 ~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAG 79 (137)
T PF12270_consen 42 VLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAG 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCC
Confidence 4456677778888888899988777666 444444443
No 298
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=24.75 E-value=2.1e+02 Score=29.22 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCCCccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheeccC
Q 011918 25 CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNL 103 (475)
Q Consensus 25 c~~~~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~~ 103 (475)
|-.-...+.+.+++|=++-++++..+-+.-.+-...+..+++-+ ++.+..-|+.-- +...+-++++.+++-++.+..
T Consensus 113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~--~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP--QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 44333456788899999999999998887777666555554421 133455555443 222334555555555666665
Q ss_pred Cc--cchhHHHHHHHHHHHHHHHh
Q 011918 104 GW--KVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 104 g~--~~~F~i~~v~~~~~~ivf~~ 125 (475)
|. ...|.++.+..+++.++...
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHh
Confidence 55 68899999888888776554
No 299
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=24.14 E-value=8.3e+02 Score=25.43 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
|+|.++...+..|+-.-...+-....+.++.|++.|-+.||+-..+-++|..+++.++-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555556677788888888888888999999999999999999999999999998876654
No 300
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=24.11 E-value=8.5e+02 Score=25.56 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=22.8
Q ss_pred ecCCccchhhHHHHHHHHHhhhhhHh
Q 011918 262 IPSGSFNIFAILTLTIWIGLYDRAVL 287 (475)
Q Consensus 262 ip~~~~~~~n~l~iii~~pl~~~~~~ 287 (475)
+|++.++.+..+..++|.|...+++.
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD 63 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWID 63 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 57888899999999999999998765
No 301
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.51 E-value=33 Score=25.61 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=2.2
Q ss_pred HHhhhcCCCcCCCCCCCCCC
Q 011918 449 ACCKAYGPFKGRVGTAFDDK 468 (475)
Q Consensus 449 ~~~~~y~~~~~~~~~~~~~~ 468 (475)
++.-.|+.|+++|++=+.||
T Consensus 29 Ilf~iyR~rkkdEGSY~l~e 48 (64)
T PF01034_consen 29 ILFLIYRMRKKDEGSYDLDE 48 (64)
T ss_dssp --------S------SS--S
T ss_pred HHHHHHHHHhcCCCCccCCC
Confidence 33445566666665555544
No 302
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=23.34 E-value=6.9e+02 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---cCchhhh
Q 011918 343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE---LPKSMSS 383 (475)
Q Consensus 343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~---AP~~~kg 383 (475)
..+++-+.-...-++.++|=.|=.|..+.+.++. .|+.+|.
T Consensus 152 ~~~i~~y~~f~l~l~~~FGv~FElPvv~~~L~~~Giv~~~~L~~ 195 (255)
T COG0805 152 ALSISKYLSFVLTLLLAFGVAFELPVVIVLLTRLGIVTPETLKK 195 (255)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3456666666666888899888888888888775 6666653
No 303
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=22.80 E-value=6.9e+02 Score=25.77 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011918 309 GLLFSTASMTAWAIVEA 325 (475)
Q Consensus 309 G~~l~~ls~~~~~~~~~ 325 (475)
++++.++.|+...+.|.
T Consensus 301 aIlfI~Ltf~afFifE~ 317 (443)
T COG4452 301 AILFIGLTFMAFFIFEV 317 (443)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 55567778877777775
No 304
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=20.33 E-value=69 Score=32.81 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC--CCCCCCCCCcccc
Q 011918 431 YYYWLLTALSMANFLYYLACCKAYGPFKGRV--GTAFDDKDGMEEE 474 (475)
Q Consensus 431 ~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~ 474 (475)
+-|...++--++....|+++..+.+..+.++ ..+||+|+.+|++
T Consensus 387 y~W~~~~a~E~at~aFy~l~gykFRP~~~~~Yf~vddeeee~~~~~ 432 (440)
T KOG2569|consen 387 YQWLSFAAEEMATLAFYVLMGYKFRPVESNEYFVVDDEEEEADELA 432 (440)
T ss_pred eeeHHHHHHHHHHHHHHhhheeeeeecccCCccccCchhhhhhhhh
Confidence 4566777777888888888877777777666 6677666666653
Done!