Query 011918
Match_columns 475
No_of_seqs 148 out of 1373
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 1.3E-22 4.6E-27 214.0 13.4 379 32-461 108-513 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.9E-18 6.3E-23 180.6 22.6 353 32-458 107-479 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.2 2.1E-10 7.2E-15 117.4 18.1 313 32-453 118-436 (451)
4 3o7q_A L-fucose-proton symport 98.8 7.5E-07 2.5E-11 90.5 23.0 88 31-125 115-228 (438)
5 2gfp_A EMRD, multidrug resista 98.6 2.6E-08 9.1E-13 99.5 4.4 83 32-121 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.4 1.4E-05 4.9E-10 82.4 20.8 80 31-117 124-211 (491)
7 1pw4_A Glycerol-3-phosphate tr 98.1 7.8E-05 2.7E-09 75.6 17.4 114 265-407 65-178 (451)
8 2cfq_A Lactose permease; trans 97.9 3.1E-06 1.1E-10 86.2 3.2 86 348-449 312-398 (417)
9 4aps_A DI-OR tripeptide H+ sym 97.9 0.00012 4E-09 75.6 13.6 143 265-456 57-202 (491)
10 3o7q_A L-fucose-proton symport 97.8 0.00033 1.1E-08 70.8 15.7 114 265-408 64-177 (438)
11 2xut_A Proton/peptide symporte 97.5 0.00099 3.4E-08 69.2 13.5 114 304-454 86-202 (524)
12 2gfp_A EMRD, multidrug resista 97.4 0.0026 8.9E-08 62.8 14.8 110 266-408 39-148 (375)
13 4gc0_A D-xylose-proton symport 95.4 0.32 1.1E-05 49.4 15.7 63 346-408 124-186 (491)
14 2cfq_A Lactose permease; trans 93.2 0.03 1E-06 56.4 2.1 84 35-125 314-398 (417)
15 2knc_A Integrin alpha-IIB; tra 36.7 58 0.002 22.5 4.6 15 436-450 20-34 (54)
16 2ks1_B Epidermal growth factor 21.1 96 0.0033 20.4 3.3 22 436-457 21-42 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=1.3e-22 Score=214.01 Aligned_cols=379 Identities=17% Similarity=0.247 Sum_probs=234.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...|...++++|.+++++. .+..+.|++++.+.|+|..+++.+.+++.+..||+..|.+
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 466788889999999999999999999999987653 3457889999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhh----------ccCCCccccc----
Q 011918 112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMY----------HHGKGSMRLM---- 177 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---- 177 (475)
.++..+++++.++..++++++.+|++++.....+.+..+.+++..+.+ +. .... ..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
T 2xut_A 184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGL 261 (524)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhh
Confidence 999988888877766555544344433333333333333332211000 00 0000 0000000000
Q ss_pred ---------CCccchh--hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHH
Q 011918 178 ---------PSENLRF--LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFL 245 (475)
Q Consensus 178 ---------~~~~~~~--ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~ 245 (475)
......| +|.++. .++..+.++.|+.+..+++++...+++..+.| .+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
T 2xut_A 262 CCAMVLVMGFVGAGASLQLERARK-------------------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTW 322 (524)
T ss_dssp HHHHHHHHHHHHTGGGTHHHHSCC-------------------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHH
T ss_pred hhhhhhhhcccccchhhHHhhhhc-------------------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 0000011 111100 01122334556677777888888888888888 7776
Q ss_pred HHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011918 246 VLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 325 (475)
Q Consensus 246 ~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~ 325 (475)
..+..+++.+. + ++.+++..++++..++..|+.+++..|..+|++.+ +++.+++.+|+++.+++++..+..+.
T Consensus 323 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~ 395 (524)
T 2xut_A 323 ILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQL 395 (524)
T ss_dssp HHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTT
T ss_pred HHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655332 1 36677888888999999999999877777765444 67788899999999988876655431
Q ss_pred HHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 011918 326 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN 405 (475)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~ 405 (475)
.+ +.....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|++....++|+.+++.+..
T Consensus 396 ~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g 462 (524)
T 2xut_A 396 MM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV 462 (524)
T ss_dssp TT-------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred Hh-------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00123678899999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcccCCCCCCCCCC-CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011918 406 AVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 406 ~~~~~~~~~~~~~w~~~-~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
.+.+.+ +.+|.++ +++ ...+.|++.+++++++.++++++.++++++++++
T Consensus 463 ~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 463 SVKSPT----VTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HTTSCH----HHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred Hhcccc----ccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 765321 0123211 111 1123377888888888888888888777665443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=1.9e-18 Score=180.56 Aligned_cols=353 Identities=16% Similarity=0.135 Sum_probs=227.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...|...++++|.+++++. +|..++++++.+.|+|..+++.+.+++.+..||++.|.+
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456788889999999999999999999999987653 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccEeecC--CCCCCh--hhHHHHHH--------------HHHhhCCCCCCCcccchhhccCCCc
Q 011918 112 PAVIMLLSALSFFLASPFYVKSK--ANTSLL--PGLTQVLV--------------ASFKNRRTKLPTQATEEMYHHGKGS 173 (475)
Q Consensus 112 ~~v~~~~~~ivf~~~~~~~~~~~--p~~spl--~~~~~v~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~ 173 (475)
.++..+++++.++..++++.+++ +..++. .+..+... .....+..... . .......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~--- 255 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLP--A-YINLLTI--- 255 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTT--H-HHHHHHH---
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--c-chhhhhH---
Confidence 99888888877765433322111 111111 11111000 00001000000 0 0000000
Q ss_pred ccccCCccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHh-
Q 011918 174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASS- 251 (475)
Q Consensus 174 ~~~~~~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~- 251 (475)
............ .|+. ......++++..+..++++...++|..+.+ .+.+..+..+
T Consensus 256 -----~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (491)
T 4aps_A 256 -----VAIAIPVFYFAW----------------MISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER 313 (491)
T ss_dssp -----HHHHHHHHHHHH----------------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS
T ss_pred -----HHHHHHHHHHHH----------------Hhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 000000000000 0000 001123456666777888888999999988 5554433332
Q ss_pred cCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011918 252 MDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 331 (475)
Q Consensus 252 ~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~ 331 (475)
.+.+. .+.+++..++.+..++..++..++.. |.++|+ +....++.+|+++.+++++..+.....
T Consensus 314 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 377 (491)
T 4aps_A 314 VDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL----- 377 (491)
T ss_dssp CCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----
T ss_pred hccCc-----cCHHHHhccchHHHHHHHHHHHHHHH----HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 22221 46788889999999999998888543 333222 567788999999999998877765431
Q ss_pred hhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011918 332 INEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 411 (475)
Q Consensus 332 ~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~ 411 (475)
.+ ...+.+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+...+.+.
T Consensus 378 --~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~- 448 (491)
T 4aps_A 378 --YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK- 448 (491)
T ss_dssp --CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-
T ss_pred --cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 01 123468889999999999999999999999999999999999999999999999999999887766521
Q ss_pred cCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011918 412 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458 (475)
Q Consensus 412 ~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 458 (475)
.....|+.+++++++..+++++..++.+++.
T Consensus 449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 449 ----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp ----------------STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344677788888888877777777665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.23 E-value=2.1e-10 Score=117.42 Aligned_cols=313 Identities=9% Similarity=-0.012 Sum_probs=174.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchhH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F~ 110 (475)
+.+.++++..+.++|.|...+...++++|.+++ ++|.+.+.++..+.++|.++++.+.+++.+..| |++.|.
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456788888999999999999999999999864 258999999999999999999999998878888 999999
Q ss_pred HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011918 111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 190 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~ 190 (475)
+.++..++..++.+...+. .|+... ..+..... ..... +....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~~~~~~~~--~~~~~----------------~~~~~ 233 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRD----TPQSCG---------------LPPIEEYK--NDYPD----------------DYNEK 233 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCC----SSTTTC---------------CCSCTTTC--CC------------------------
T ss_pred HHHHHHHHHHHHHHhhccC----CHhhcC---------------CCChhhhc--ccccc----------------cchhh
Confidence 9887776665554333221 111100 00000000 00000 00000
Q ss_pred ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecC---Ccc
Q 011918 191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPS---GSF 267 (475)
Q Consensus 191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~---~~~ 267 (475)
. .. ...++ +....+..+-..+..+.+...+++..+.. ...+....+....+ .++ +++
T Consensus 234 --~--------~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g----~~~~~~~~~ 293 (451)
T 1pw4_A 234 --A--------EQ-ELTAK---QIFMQYVLPNKLLWYIAIANVFVYLLRYG--ILDWSPTYLKEVKH----FALDKSSWA 293 (451)
T ss_dssp ----------------CCT---HHHHHHTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHBTTBSC----CCHHHHHHH
T ss_pred --h--------hc-ccccc---cchHHHHHcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcC----CCHHHHHHH
Confidence 0 00 00000 00000100001112222222222222211 11111222222221 122 234
Q ss_pred chhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011918 268 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQM 346 (475)
Q Consensus 268 ~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v 346 (475)
.+...+..++..++..++ .+|..+ ...+.+.++.++.+ ++++..... ...
T Consensus 294 ~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 344 (451)
T 1pw4_A 294 YFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------PAG 344 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------ccc
Confidence 444444444444544443 233200 11222334444333 333322111 013
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH-HHHHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 011918 347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNIN 425 (475)
Q Consensus 347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i-g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 425 (475)
+.++.+...++.+++-....+....++.+..|++.+|.++|++.....+ |..+++.+...+.+.. +
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g------- 411 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------- 411 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C-------
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-------
Confidence 5566667778888888888888889999999999999999999999998 9999998887655321 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011918 426 KGHYDYYYWLLTALSMANFLYYLACCKA 453 (475)
Q Consensus 426 ~~~~~~~f~~la~l~~~~~~~~~~~~~~ 453 (475)
....|++.++++++..++++...++
T Consensus 412 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ---WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777766665444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.79 E-value=7.5e-07 Score=90.54 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=72.3
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee-ccCC-----
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG----- 104 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~-~~~g----- 104 (475)
.+.+.++++..+.++|.|...+...++++|.++++ +|...++++..+.++|..+++.+.+++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 34678889999999999999999999999999653 4788899999999999999999999887 5555
Q ss_pred --------------------ccchhHHHHHHHHHHHHHHHh
Q 011918 105 --------------------WKVGFGVPAVIMLLSALSFFL 125 (475)
Q Consensus 105 --------------------~~~~F~i~~v~~~~~~ivf~~ 125 (475)
|++.|.+.++..++..++++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899997766665555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.57 E-value=2.6e-08 Score=99.52 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011918 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV 111 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i 111 (475)
+.+.++++..+.++|.|...+...+++.|.++++ +|.+.+.++..+.++|..+++.+.+++.+..||+..|.+
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 4566777888899999999999999999998653 378889999999999999999999999988899999998
Q ss_pred HHHHHHHHHH
Q 011918 112 PAVIMLLSAL 121 (475)
Q Consensus 112 ~~v~~~~~~i 121 (475)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.43 E-value=1.4e-05 Score=82.42 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=61.0
Q ss_pred cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc--------
Q 011918 31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------- 102 (475)
Q Consensus 31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-------- 102 (475)
...+.++++-.+.++|.|+.-+....+++|..++ ++|.....++..++++|.+++..+...+...
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 4577899999999999999999999999998754 3588888999999999999998776655432
Q ss_pred CCccchhHHHHHHHH
Q 011918 103 LGWKVGFGVPAVIML 117 (475)
Q Consensus 103 ~g~~~~F~i~~v~~~ 117 (475)
.+|++.+.+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 197 DGWRYMFASECIPAL 211 (491)
T ss_dssp THHHHHHHTTHHHHH
T ss_pred hhhHHHhhhhhhhhh
Confidence 235555554444333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.10 E-value=7.8e-05 Score=75.65 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=84.3
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+...+..|+..++ .+|.+ ..+-+.+|.++.+++.+..++....
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------ 115 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------ 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence 345555555556666666554 34432 2234667888888877766652210
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
..+.++++...++.|++.....|....++.+..|++.|+..+|++....++|..+++.+....
T Consensus 116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 034567778899999999999999999999999999999999999999999999999888664
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.94 E-value=3.1e-06 Score=86.19 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011918 348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 426 (475)
Q Consensus 348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 426 (475)
.++++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+...+.+..
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------------- 376 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence 44555555667777666667778899999999999999998 57777888888888877544210
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 011918 427 GHYDYYYWLLTALSMANFLYYLA 449 (475)
Q Consensus 427 ~~~~~~f~~la~l~~~~~~~~~~ 449 (475)
.....|.+.++++++..++.+.
T Consensus 377 -g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 377 -GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CcHHHHHHHHHHHHHHHHHHHh
Confidence 1334566677777766665543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.87 E-value=0.00012 Score=75.59 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=98.6
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhh-ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASK-IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 343 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~-~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (475)
+++.+...+...+..|+..++. +| .++ .+-+.+|.++.+++.+..++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~----dr~~g~-------r~~~~~~~~~~~~~~~~~~~~-------------------- 105 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVA----DRIIGA-------RPAVFWGGVLIMLGHIVLALP-------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHTSCH-------HHHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3555666666666667666643 33 221 233566777776666544321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011918 344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 421 (475)
Q Consensus 344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~--kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~ 421 (475)
.+.++++...++.|+++....|....++.+..|++. |+..++++.....+|..+++.+...+.... +|
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~-- 175 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY-- 175 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH--
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH--
Confidence 345667788899999999999999999999999988 888888899999999999998887765321 23
Q ss_pred CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011918 422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 456 (475)
Q Consensus 422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~ 456 (475)
...|++.+++.++..++++...+++.+
T Consensus 176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 --------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 345556666666666666666555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.81 E-value=0.00033 Score=70.75 Aligned_cols=114 Identities=14% Similarity=0.019 Sum_probs=85.7
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011918 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+..++..|+..++ .+|. ...+-+.+|.++.+++.+..+....
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~------------------- 113 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGIL----MKKL-------SYKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHh-------cchHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 344555555555666666554 3443 2234467788888877776643211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
..+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1457778888999999999999999999999999999999999999999999999999887654
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.46 E-value=0.00099 Score=69.21 Aligned_cols=114 Identities=17% Similarity=0.027 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011918 304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383 (475)
Q Consensus 304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg 383 (475)
+-+.+|.++.+++.+..++. +.+.++++...++.|+++....|....++.+..|++.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 144 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIF---------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence 34566777777766554432 125677778889999999999999999999999999998
Q ss_pred HHHHH---HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011918 384 IASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454 (475)
Q Consensus 384 ~~~g~---~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y 454 (475)
..+++ +....++|..+++.+...+.... + ....|++.+++.++..++++...+++
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g----------~~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G----------AAVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C----------HHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77766 88888889888887776554210 2 23456666666665555554433333
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.38 E-value=0.0026 Score=62.81 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011918 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 345 (475)
Q Consensus 266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (475)
++.+...+...+..|+..++ .+|.++| +-+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 44555555556666665554 3444333 12456777777777665543
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
.+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 245667788899999999999999999999999999999999999999999999998887654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.36 E-value=0.32 Score=49.38 Aligned_cols=63 Identities=6% Similarity=0.069 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011918 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 408 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~ 408 (475)
-+.+.++..-++.|+|+-...+.+..++.+.+|++.|+..++++.....+|..++..+.....
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 467778888999999999999999999999999999999999999999999999887776544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=93.24 E-value=0.03 Score=56.38 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011918 35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 113 (475)
Q Consensus 35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~-fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~ 113 (475)
.+.+...+.+++.+.+-+...++..|.+++ +.|..++.+ +..+.++|+.++|.+.+++.+..||...|.+.+
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 344444455666666666667788888754 346677777 467778999999999999988889999999988
Q ss_pred HHHHHHHHHHHh
Q 011918 114 VIMLLSALSFFL 125 (475)
Q Consensus 114 v~~~~~~ivf~~ 125 (475)
+..+++.++.+.
T Consensus 387 ~~~l~~~~~~~~ 398 (417)
T 2cfq_A 387 LVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888887776544
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.71 E-value=58 Score=22.51 Aligned_cols=15 Identities=20% Similarity=0.188 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 011918 436 LTALSMANFLYYLAC 450 (475)
Q Consensus 436 la~l~~~~~~~~~~~ 450 (475)
++++-++..+++.+.
T Consensus 20 l~GLllL~li~~~Lw 34 (54)
T 2knc_A 20 LGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 16
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.06 E-value=96 Score=20.42 Aligned_cols=22 Identities=14% Similarity=-0.199 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q 011918 436 LTALSMANFLYYLACCKAYGPF 457 (475)
Q Consensus 436 la~l~~~~~~~~~~~~~~y~~~ 457 (475)
++++.++.+++++++.++-+++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHHHhhhhHhhc
Confidence 3344455555555555554443
Done!