Query 011919
Match_columns 475
No_of_seqs 623 out of 3082
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 06:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.2E-61 9E-66 487.9 54.0 379 71-458 419-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.6E-60 1.2E-64 479.7 54.1 411 56-472 367-778 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.3E-58 5E-63 465.1 46.6 399 59-473 87-487 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.2E-55 1.8E-59 439.3 45.5 398 55-472 119-518 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.1E-54 1.1E-58 443.7 44.9 396 58-472 252-649 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.9E-53 8.5E-58 437.1 42.5 399 57-472 49-448 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7E-24 1.5E-28 223.7 52.2 386 70-473 511-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-23 5.5E-28 219.5 50.6 376 71-463 444-819 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3E-26 185.6 36.0 298 105-411 46-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.5E-21 3.3E-26 185.3 35.3 304 136-449 42-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.2E-18 9.1E-23 169.8 43.8 323 70-405 54-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 2E-17 4.4E-22 165.4 45.5 365 99-473 132-567 (615)
13 PRK11447 cellulose synthase su 99.9 1.6E-17 3.4E-22 176.9 47.2 386 71-474 282-737 (1157)
14 PRK15174 Vi polysaccharide exp 99.9 2.9E-18 6.3E-23 171.0 39.1 346 98-457 46-396 (656)
15 PRK10049 pgaA outer membrane p 99.9 9.1E-17 2E-21 163.7 46.7 404 54-472 10-451 (765)
16 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.3E-23 159.6 28.6 362 93-471 115-479 (966)
17 PRK11447 cellulose synthase su 99.9 1.6E-16 3.4E-21 169.4 48.6 362 101-472 276-695 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.8 2.3E-16 5.1E-21 157.8 45.9 361 70-443 139-572 (615)
19 KOG4626 O-linked N-acetylgluco 99.8 1.5E-17 3.3E-22 152.1 32.1 356 71-443 129-486 (966)
20 PRK14574 hmsH outer membrane p 99.8 2.9E-15 6.2E-20 150.1 48.0 391 70-471 46-507 (822)
21 PRK10049 pgaA outer membrane p 99.8 2.4E-15 5.3E-20 153.3 47.7 371 70-456 61-468 (765)
22 PRK14574 hmsH outer membrane p 99.8 9.2E-15 2E-19 146.5 44.3 368 96-474 37-476 (822)
23 KOG4422 Uncharacterized conser 99.8 4.4E-15 9.6E-20 130.5 35.0 362 106-473 127-586 (625)
24 PRK09782 bacteriophage N4 rece 99.8 3.4E-13 7.5E-18 138.2 47.7 223 237-473 480-702 (987)
25 KOG4422 Uncharacterized conser 99.7 3.1E-14 6.7E-19 125.2 33.5 362 91-459 204-607 (625)
26 PRK09782 bacteriophage N4 rece 99.7 1E-12 2.3E-17 134.7 42.8 344 110-471 358-734 (987)
27 TIGR00540 hemY_coli hemY prote 99.7 1.6E-13 3.4E-18 130.1 31.7 116 142-262 97-215 (409)
28 PRK10747 putative protoheme IX 99.7 3.6E-13 7.8E-18 126.9 32.9 283 142-441 97-389 (398)
29 KOG2076 RNA polymerase III tra 99.7 3.4E-12 7.4E-17 122.6 37.6 358 102-467 147-545 (895)
30 PRK10747 putative protoheme IX 99.7 8.3E-13 1.8E-17 124.5 33.4 285 107-405 97-390 (398)
31 PF13429 TPR_15: Tetratricopep 99.7 1.7E-15 3.7E-20 136.4 13.5 257 205-473 14-273 (280)
32 PF13429 TPR_15: Tetratricopep 99.6 3E-15 6.4E-20 134.8 13.5 24 345-368 218-241 (280)
33 TIGR00540 hemY_coli hemY prote 99.6 3.7E-12 8E-17 120.8 33.9 291 105-404 95-398 (409)
34 KOG2076 RNA polymerase III tra 99.6 1.4E-11 3E-16 118.6 35.0 324 138-472 149-507 (895)
35 COG2956 Predicted N-acetylgluc 99.6 7.4E-12 1.6E-16 106.7 29.4 287 107-405 48-347 (389)
36 COG3071 HemY Uncharacterized e 99.6 2.3E-11 5.1E-16 106.8 30.9 281 177-471 97-384 (400)
37 KOG2003 TPR repeat-containing 99.6 2E-11 4.3E-16 108.6 30.2 379 74-465 217-711 (840)
38 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.6E-16 104.0 28.5 301 132-447 39-352 (389)
39 COG3071 HemY Uncharacterized e 99.5 2E-10 4.3E-15 101.1 34.2 286 107-404 97-389 (400)
40 KOG2002 TPR-containing nuclear 99.5 1.9E-10 4.1E-15 111.7 36.2 113 355-471 626-739 (1018)
41 KOG1126 DNA-binding cell divis 99.5 7.3E-12 1.6E-16 116.8 25.1 286 144-447 334-625 (638)
42 KOG1155 Anaphase-promoting com 99.5 2.2E-09 4.9E-14 96.2 38.7 312 137-460 235-552 (559)
43 KOG1155 Anaphase-promoting com 99.5 3.6E-10 7.7E-15 101.1 33.4 326 126-470 161-488 (559)
44 KOG0495 HAT repeat protein [RN 99.5 4.1E-09 8.9E-14 98.4 40.1 356 97-471 519-874 (913)
45 KOG2002 TPR-containing nuclear 99.5 2.6E-10 5.7E-15 110.8 33.8 319 126-453 411-756 (1018)
46 KOG4318 Bicoid mRNA stability 99.5 7.9E-12 1.7E-16 119.7 22.4 86 303-391 201-286 (1088)
47 KOG1126 DNA-binding cell divis 99.5 8.6E-12 1.9E-16 116.3 22.1 276 179-471 334-614 (638)
48 KOG0495 HAT repeat protein [RN 99.5 9.6E-09 2.1E-13 96.0 41.0 341 89-442 435-782 (913)
49 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 105.9 18.5 234 233-474 222-455 (478)
50 KOG1915 Cell cycle control pro 99.4 1.1E-08 2.3E-13 92.2 37.1 387 71-472 86-531 (677)
51 KOG4318 Bicoid mRNA stability 99.4 1.7E-11 3.8E-16 117.4 19.8 275 115-428 11-286 (1088)
52 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.8E-15 99.4 25.6 198 166-368 33-230 (234)
53 TIGR02521 type_IV_pilW type IV 99.4 4.6E-10 1E-14 98.3 26.3 200 199-404 31-231 (234)
54 PRK12370 invasion protein regu 99.4 1.1E-09 2.3E-14 108.1 31.0 251 179-443 276-536 (553)
55 PRK12370 invasion protein regu 99.4 8.8E-10 1.9E-14 108.7 29.7 269 126-406 253-536 (553)
56 PF13041 PPR_2: PPR repeat fam 99.4 2.9E-12 6.4E-17 81.3 6.6 50 269-318 1-50 (50)
57 PF13041 PPR_2: PPR repeat fam 99.3 3.6E-12 7.8E-17 80.8 6.5 49 197-245 1-49 (50)
58 KOG2003 TPR repeat-containing 99.3 2.1E-09 4.4E-14 96.1 25.9 279 138-428 428-709 (840)
59 KOG1840 Kinesin light chain [C 99.3 2.4E-09 5.3E-14 100.9 27.7 245 196-440 196-477 (508)
60 KOG0547 Translocase of outer m 99.3 1.7E-08 3.6E-13 91.3 30.9 219 212-442 339-566 (606)
61 KOG1129 TPR repeat-containing 99.3 5.7E-10 1.2E-14 95.5 20.1 230 203-443 227-459 (478)
62 KOG1915 Cell cycle control pro 99.3 1.8E-07 3.9E-12 84.5 35.1 363 99-474 78-497 (677)
63 PF12569 NARP1: NMDA receptor- 99.3 3.1E-08 6.7E-13 94.7 32.0 260 102-371 12-292 (517)
64 PF12569 NARP1: NMDA receptor- 99.3 2.1E-08 4.6E-13 95.8 30.8 283 173-470 13-327 (517)
65 KOG1156 N-terminal acetyltrans 99.3 2.4E-07 5.2E-12 86.9 35.7 88 380-471 375-462 (700)
66 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.7E-13 96.3 26.3 243 230-472 195-474 (508)
67 KOG0547 Translocase of outer m 99.2 7.7E-08 1.7E-12 87.1 29.0 360 101-472 122-561 (606)
68 KOG2047 mRNA splicing factor [ 99.2 1.3E-06 2.8E-11 82.0 37.3 167 237-404 390-578 (835)
69 KOG1174 Anaphase-promoting com 99.2 9.4E-07 2E-11 78.6 34.4 321 122-456 187-513 (564)
70 KOG1173 Anaphase-promoting com 99.2 6.5E-08 1.4E-12 89.2 28.2 283 91-385 241-531 (611)
71 KOG1173 Anaphase-promoting com 99.2 7.8E-08 1.7E-12 88.7 28.0 282 163-458 243-532 (611)
72 cd05804 StaR_like StaR_like; a 99.1 3.7E-07 8E-12 85.6 32.5 265 173-442 52-336 (355)
73 KOG2376 Signal recognition par 99.1 2.3E-06 4.9E-11 79.7 35.8 381 70-470 24-513 (652)
74 PRK11189 lipoprotein NlpI; Pro 99.1 2.1E-07 4.5E-12 84.2 28.7 198 235-443 65-266 (296)
75 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-07 2.5E-12 85.9 26.2 195 165-370 65-265 (296)
76 COG3063 PilF Tfp pilus assembl 99.1 9.6E-08 2.1E-12 78.3 22.6 190 238-435 39-229 (250)
77 COG3063 PilF Tfp pilus assembl 99.1 2.1E-07 4.6E-12 76.3 23.9 51 347-398 179-229 (250)
78 KOG4162 Predicted calmodulin-b 99.0 7E-06 1.5E-10 78.9 35.3 375 88-472 317-778 (799)
79 cd05804 StaR_like StaR_like; a 99.0 2.3E-06 5E-11 80.2 32.7 303 164-473 6-332 (355)
80 KOG1174 Anaphase-promoting com 99.0 2.7E-06 5.8E-11 75.8 28.8 271 125-406 228-501 (564)
81 PF04733 Coatomer_E: Coatomer 99.0 8.7E-08 1.9E-12 85.4 19.1 222 131-369 37-264 (290)
82 KOG4340 Uncharacterized conser 99.0 3.9E-07 8.4E-12 77.5 21.6 194 98-303 14-210 (459)
83 KOG3785 Uncharacterized conser 99.0 6E-06 1.3E-10 72.2 28.7 339 106-469 69-449 (557)
84 PF04733 Coatomer_E: Coatomer 98.9 7.1E-08 1.5E-12 86.0 17.4 249 140-406 12-266 (290)
85 KOG1156 N-terminal acetyltrans 98.9 4.5E-05 9.9E-10 72.1 36.0 358 70-444 53-470 (700)
86 KOG2047 mRNA splicing factor [ 98.9 4.1E-05 8.9E-10 72.3 35.0 359 98-471 106-534 (835)
87 PRK04841 transcriptional regul 98.9 2E-05 4.3E-10 83.7 37.5 336 138-473 383-756 (903)
88 PRK04841 transcriptional regul 98.9 1.4E-05 3.1E-10 84.8 35.6 308 135-443 415-761 (903)
89 KOG3617 WD40 and TPR repeat-co 98.9 5.3E-06 1.1E-10 80.2 28.2 351 71-475 741-1172(1416)
90 KOG0985 Vesicle coat protein c 98.9 3.5E-05 7.5E-10 76.4 33.6 204 93-328 983-1188(1666)
91 KOG4162 Predicted calmodulin-b 98.8 0.00011 2.4E-09 71.0 35.2 341 93-443 356-784 (799)
92 KOG1070 rRNA processing protei 98.8 2.7E-06 5.9E-11 86.6 25.2 232 231-471 1455-1694(1710)
93 KOG0985 Vesicle coat protein c 98.8 9.6E-05 2.1E-09 73.4 33.6 282 58-393 983-1266(1666)
94 KOG1125 TPR repeat-containing 98.8 2.5E-06 5.4E-11 79.3 22.0 248 209-470 295-564 (579)
95 KOG4340 Uncharacterized conser 98.8 5.2E-06 1.1E-10 70.8 21.6 328 124-468 5-366 (459)
96 KOG0548 Molecular co-chaperone 98.7 4.5E-05 9.9E-10 70.6 28.0 376 69-459 13-471 (539)
97 KOG3616 Selective LIM binding 98.7 1.2E-05 2.6E-10 76.9 24.8 327 88-473 583-933 (1636)
98 KOG1125 TPR repeat-containing 98.7 2.7E-06 5.9E-11 79.1 20.1 253 172-434 293-563 (579)
99 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.7E-13 56.9 4.2 32 159-190 2-33 (34)
100 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.5E-13 57.0 4.0 28 231-258 4-31 (34)
101 KOG2376 Signal recognition par 98.7 0.0003 6.4E-09 66.1 34.6 319 103-438 88-516 (652)
102 PLN02789 farnesyltranstransfer 98.7 3.5E-05 7.6E-10 69.8 26.1 209 102-318 45-267 (320)
103 KOG3785 Uncharacterized conser 98.7 2E-05 4.2E-10 69.1 22.6 331 92-443 119-491 (557)
104 KOG1128 Uncharacterized conser 98.7 5.6E-06 1.2E-10 79.1 20.9 208 234-460 398-635 (777)
105 KOG1070 rRNA processing protei 98.7 2E-05 4.3E-10 80.6 25.7 224 163-394 1457-1689(1710)
106 PLN02789 farnesyltranstransfer 98.7 9.3E-05 2E-09 67.1 28.1 125 172-301 45-172 (320)
107 KOG0624 dsRNA-activated protei 98.7 0.00022 4.7E-09 62.5 31.6 297 135-443 44-371 (504)
108 TIGR03302 OM_YfiO outer membra 98.7 3.8E-06 8.3E-11 73.6 18.8 55 279-333 174-230 (235)
109 PRK10370 formate-dependent nit 98.7 1.1E-05 2.5E-10 67.9 20.6 159 278-454 23-184 (198)
110 TIGR03302 OM_YfiO outer membra 98.7 8E-06 1.7E-10 71.6 20.7 192 232-442 31-232 (235)
111 KOG3617 WD40 and TPR repeat-co 98.6 1.2E-05 2.6E-10 77.8 22.3 243 126-404 723-995 (1416)
112 KOG1128 Uncharacterized conser 98.6 2.2E-05 4.7E-10 75.2 23.5 238 125-386 394-633 (777)
113 KOG1914 mRNA cleavage and poly 98.6 0.0005 1.1E-08 64.0 34.4 404 58-471 19-495 (656)
114 KOG3081 Vesicle coat complex C 98.6 0.00012 2.6E-09 61.8 24.2 170 222-404 96-270 (299)
115 KOG3081 Vesicle coat complex C 98.6 0.00012 2.6E-09 61.8 24.0 247 105-370 19-271 (299)
116 KOG0624 dsRNA-activated protei 98.6 0.0003 6.5E-09 61.6 27.1 296 163-469 37-362 (504)
117 KOG0548 Molecular co-chaperone 98.6 0.00031 6.8E-09 65.2 28.2 360 102-472 10-450 (539)
118 PRK14720 transcript cleavage f 98.5 0.00011 2.4E-09 74.4 27.3 58 236-297 118-175 (906)
119 COG5010 TadD Flp pilus assembl 98.5 2.1E-05 4.6E-10 66.2 18.5 159 275-439 70-228 (257)
120 KOG3616 Selective LIM binding 98.5 0.00056 1.2E-08 65.9 29.8 135 313-471 739-873 (1636)
121 PRK14720 transcript cleavage f 98.5 9.9E-05 2.1E-09 74.7 25.8 239 163-447 30-289 (906)
122 PRK15179 Vi polysaccharide bio 98.5 0.00012 2.6E-09 73.2 26.0 183 268-463 83-270 (694)
123 PRK15359 type III secretion sy 98.5 8.3E-06 1.8E-10 64.9 14.3 110 344-458 27-136 (144)
124 PRK10370 formate-dependent nit 98.5 4.8E-05 1.1E-09 64.1 19.6 119 177-300 52-173 (198)
125 COG5010 TadD Flp pilus assembl 98.5 5.2E-05 1.1E-09 64.0 19.0 154 137-296 74-227 (257)
126 COG4783 Putative Zn-dependent 98.4 0.00034 7.4E-09 64.4 25.0 116 317-438 317-433 (484)
127 PRK15179 Vi polysaccharide bio 98.4 5.4E-05 1.2E-09 75.7 21.1 132 128-262 85-216 (694)
128 COG4783 Putative Zn-dependent 98.4 0.00073 1.6E-08 62.3 26.0 111 210-326 317-428 (484)
129 PRK15359 type III secretion sy 98.4 3.2E-05 6.9E-10 61.6 15.2 92 169-262 29-120 (144)
130 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.6E-09 57.8 14.9 91 205-299 23-113 (135)
131 KOG1127 TPR repeat-containing 98.2 0.0016 3.4E-08 65.1 24.9 183 108-299 472-658 (1238)
132 TIGR02552 LcrH_SycD type III s 98.2 6.6E-05 1.4E-09 59.2 13.4 94 167-262 20-113 (135)
133 KOG3060 Uncharacterized conser 98.2 0.0026 5.7E-08 53.6 22.6 83 248-334 100-182 (289)
134 KOG1127 TPR repeat-containing 98.2 0.0029 6.4E-08 63.3 26.6 162 96-262 494-658 (1238)
135 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 47.9 4.6 33 343-375 2-34 (35)
136 PF09976 TPR_21: Tetratricopep 98.1 0.00023 5E-09 56.8 15.8 118 247-366 24-143 (145)
137 KOG3060 Uncharacterized conser 98.1 0.0016 3.4E-08 54.9 20.6 190 247-443 25-221 (289)
138 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.8E-11 48.1 4.3 33 273-305 2-34 (35)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00025 5.4E-09 65.7 17.5 123 168-298 173-295 (395)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.5E-09 57.8 14.4 126 309-439 15-144 (145)
141 KOG2053 Mitochondrial inherita 98.1 0.013 2.8E-07 58.3 30.7 224 106-337 21-257 (932)
142 PF13812 PPR_3: Pentatricopept 98.1 5.9E-06 1.3E-10 47.2 4.2 32 273-304 3-34 (34)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00029 6.3E-09 65.3 17.4 119 311-437 174-292 (395)
144 PF13812 PPR_3: Pentatricopept 98.1 6.8E-06 1.5E-10 47.0 4.2 32 201-232 3-34 (34)
145 PF10037 MRP-S27: Mitochondria 98.0 8E-05 1.7E-09 69.2 12.5 123 125-247 62-186 (429)
146 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.6E-09 68.1 13.4 124 194-319 61-186 (429)
147 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00033 7.2E-09 53.7 14.1 99 343-443 4-106 (119)
148 KOG2053 Mitochondrial inherita 98.0 0.022 4.7E-07 56.8 38.8 229 65-301 16-256 (932)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00023 5E-09 51.9 10.0 68 320-387 39-115 (120)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00024 5.2E-09 51.8 10.0 76 278-353 32-116 (120)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0011 2.4E-08 50.8 14.1 95 205-299 8-104 (119)
152 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 42.9 3.6 29 201-229 2-30 (31)
153 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.6E-10 43.1 3.4 29 273-301 2-30 (31)
154 PF14938 SNAP: Soluble NSF att 97.8 0.005 1.1E-07 55.4 19.0 61 344-404 158-224 (282)
155 PF12688 TPR_5: Tetratrico pep 97.8 0.0023 4.9E-08 48.6 14.0 109 347-459 7-117 (120)
156 KOG1914 mRNA cleavage and poly 97.7 0.041 8.9E-07 51.8 37.7 153 287-442 347-501 (656)
157 cd00189 TPR Tetratricopeptide 97.7 0.00084 1.8E-08 48.6 11.3 95 344-442 3-97 (100)
158 PF06239 ECSIT: Evolutionarily 97.7 0.0011 2.3E-08 54.9 12.1 103 269-390 45-152 (228)
159 cd00189 TPR Tetratricopeptide 97.7 0.00072 1.6E-08 49.0 10.5 87 172-260 8-94 (100)
160 PRK02603 photosystem I assembl 97.6 0.0042 9.2E-08 51.2 15.5 61 309-369 38-100 (172)
161 PRK15363 pathogenicity island 97.6 0.0044 9.5E-08 48.9 14.1 92 169-262 40-131 (157)
162 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.5E-08 52.9 13.2 119 342-463 36-166 (168)
163 PF06239 ECSIT: Evolutionarily 97.6 0.0006 1.3E-08 56.3 9.5 34 181-214 120-153 (228)
164 KOG0550 Molecular chaperone (D 97.6 0.014 3.1E-07 52.9 18.7 53 138-191 58-110 (486)
165 PLN03088 SGT1, suppressor of 97.6 0.0031 6.6E-08 58.7 15.6 91 314-406 10-100 (356)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 51.5 5.6 81 354-438 2-83 (84)
167 PF05843 Suf: Suppressor of fo 97.6 0.003 6.6E-08 56.6 15.0 128 201-333 3-134 (280)
168 PF14938 SNAP: Soluble NSF att 97.6 0.012 2.7E-07 52.9 18.7 96 240-335 120-225 (282)
169 PF05843 Suf: Suppressor of fo 97.6 0.0018 3.9E-08 58.0 13.2 130 166-300 3-136 (280)
170 PF12895 Apc3: Anaphase-promot 97.5 0.00029 6.3E-09 50.2 6.2 20 240-259 31-50 (84)
171 PRK10866 outer membrane biogen 97.5 0.035 7.6E-07 48.5 20.3 51 386-436 185-235 (243)
172 PRK02603 photosystem I assembl 97.5 0.0098 2.1E-07 49.0 15.9 86 201-289 37-124 (172)
173 CHL00033 ycf3 photosystem I as 97.5 0.0034 7.5E-08 51.5 13.1 64 199-262 35-100 (168)
174 PRK10866 outer membrane biogen 97.5 0.048 1E-06 47.6 20.7 60 239-298 180-239 (243)
175 KOG2041 WD40 repeat protein [G 97.5 0.1 2.3E-06 50.7 23.3 205 126-367 689-904 (1189)
176 KOG0553 TPR repeat-containing 97.5 0.0028 6E-08 54.9 11.9 86 353-442 93-178 (304)
177 PLN03088 SGT1, suppressor of 97.4 0.0046 9.9E-08 57.5 14.2 88 139-228 12-99 (356)
178 PF04840 Vps16_C: Vps16, C-ter 97.4 0.094 2E-06 47.7 26.7 44 131-183 2-45 (319)
179 PRK15363 pathogenicity island 97.4 0.017 3.6E-07 45.7 14.7 88 350-441 44-131 (157)
180 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.7E-08 44.2 7.1 58 383-443 4-61 (65)
181 PF13525 YfiO: Outer membrane 97.3 0.055 1.2E-06 46.0 18.7 48 420-467 148-197 (203)
182 COG4235 Cytochrome c biogenesi 97.3 0.024 5.2E-07 49.5 16.2 114 330-449 146-262 (287)
183 KOG2041 WD40 repeat protein [G 97.3 0.19 4.1E-06 49.0 23.1 247 166-443 798-1087(1189)
184 PF13525 YfiO: Outer membrane 97.3 0.084 1.8E-06 44.8 19.4 191 235-434 6-199 (203)
185 PRK10153 DNA-binding transcrip 97.3 0.027 5.9E-07 54.9 17.9 64 341-406 420-483 (517)
186 KOG2796 Uncharacterized conser 97.3 0.061 1.3E-06 45.9 17.3 132 166-300 179-315 (366)
187 PF12688 TPR_5: Tetratrico pep 97.3 0.037 8E-07 42.0 14.9 55 208-262 10-66 (120)
188 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.1E-06 46.5 29.6 110 307-438 178-287 (319)
189 PRK10803 tol-pal system protei 97.2 0.014 3.1E-07 51.4 14.3 98 344-443 146-247 (263)
190 PRK10153 DNA-binding transcrip 97.2 0.02 4.4E-07 55.8 16.6 138 196-338 334-485 (517)
191 KOG2280 Vacuolar assembly/sort 97.2 0.27 5.9E-06 48.4 31.6 325 121-471 424-793 (829)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0022 4.7E-08 43.4 6.7 53 388-443 3-55 (68)
193 PF03704 BTAD: Bacterial trans 97.1 0.028 6.2E-07 44.8 14.3 73 378-453 64-141 (146)
194 PF14559 TPR_19: Tetratricopep 97.1 0.0016 3.4E-08 44.1 5.8 50 212-262 4-53 (68)
195 PF13414 TPR_11: TPR repeat; P 97.1 0.0039 8.5E-08 42.2 7.4 64 376-442 3-67 (69)
196 KOG0553 TPR repeat-containing 97.1 0.0061 1.3E-07 52.9 9.9 97 138-238 90-186 (304)
197 PRK10803 tol-pal system protei 97.1 0.014 3.1E-07 51.4 12.6 99 202-300 146-246 (263)
198 PF13432 TPR_16: Tetratricopep 97.0 0.0037 8E-08 41.8 6.6 52 209-261 7-58 (65)
199 KOG1130 Predicted G-alpha GTPa 97.0 0.016 3.5E-07 52.5 12.2 134 308-442 197-344 (639)
200 COG3898 Uncharacterized membra 97.0 0.28 6.1E-06 44.6 29.3 283 142-442 97-392 (531)
201 COG4700 Uncharacterized protei 97.0 0.15 3.2E-06 41.3 18.3 126 127-254 87-213 (251)
202 PF13281 DUF4071: Domain of un 96.9 0.18 3.8E-06 46.5 18.7 85 233-317 140-228 (374)
203 COG4700 Uncharacterized protei 96.9 0.18 3.8E-06 40.8 19.0 101 269-369 87-188 (251)
204 KOG2796 Uncharacterized conser 96.8 0.26 5.6E-06 42.3 19.2 60 275-334 181-240 (366)
205 PF13414 TPR_11: TPR repeat; P 96.8 0.0094 2E-07 40.3 7.6 61 235-298 4-65 (69)
206 PF13371 TPR_9: Tetratricopept 96.8 0.012 2.5E-07 40.4 8.0 57 384-443 3-59 (73)
207 COG4235 Cytochrome c biogenesi 96.7 0.11 2.5E-06 45.5 15.1 101 196-300 153-256 (287)
208 PF12921 ATP13: Mitochondrial 96.7 0.031 6.8E-07 42.9 10.4 53 229-282 47-99 (126)
209 KOG1130 Predicted G-alpha GTPa 96.7 0.018 3.9E-07 52.2 10.0 130 342-472 196-339 (639)
210 PF03704 BTAD: Bacterial trans 96.6 0.019 4.1E-07 45.8 9.2 70 236-308 64-138 (146)
211 PF09205 DUF1955: Domain of un 96.5 0.23 5.1E-06 37.6 14.3 63 344-407 89-151 (161)
212 PF04053 Coatomer_WDAD: Coatom 96.4 0.16 3.5E-06 48.4 15.5 155 71-260 274-428 (443)
213 PF13281 DUF4071: Domain of un 96.4 0.57 1.2E-05 43.3 18.2 80 130-209 142-227 (374)
214 PF13424 TPR_12: Tetratricopep 96.4 0.012 2.6E-07 41.0 6.1 64 378-441 7-74 (78)
215 KOG1538 Uncharacterized conser 96.4 0.58 1.3E-05 45.4 18.4 44 280-332 756-799 (1081)
216 PF12921 ATP13: Mitochondrial 96.4 0.081 1.8E-06 40.6 10.7 51 371-422 47-97 (126)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.88 1.9E-05 42.3 25.7 122 343-470 399-524 (660)
218 KOG1585 Protein required for f 96.3 0.27 5.8E-06 41.7 13.9 146 87-258 24-174 (308)
219 PF13371 TPR_9: Tetratricopept 96.3 0.041 8.8E-07 37.6 8.0 53 316-369 5-57 (73)
220 KOG1920 IkappaB kinase complex 96.2 2.1 4.5E-05 45.0 23.1 78 315-404 948-1027(1265)
221 smart00299 CLH Clathrin heavy 96.1 0.52 1.1E-05 37.2 15.4 85 275-367 11-95 (140)
222 PF04053 Coatomer_WDAD: Coatom 96.1 0.26 5.7E-06 47.1 14.7 25 234-258 347-371 (443)
223 KOG1538 Uncharacterized conser 96.0 0.47 1E-05 46.0 15.8 81 344-439 750-830 (1081)
224 PF07079 DUF1347: Protein of u 96.0 1.4 2.9E-05 41.2 34.9 73 104-176 89-179 (549)
225 COG3118 Thioredoxin domain-con 96.0 1 2.2E-05 39.6 16.9 145 138-286 143-287 (304)
226 COG1729 Uncharacterized protei 96.0 0.2 4.2E-06 43.4 12.2 98 343-443 144-245 (262)
227 PF13424 TPR_12: Tetratricopep 95.9 0.038 8.3E-07 38.4 6.4 61 236-296 7-71 (78)
228 PF10300 DUF3808: Protein of u 95.8 0.31 6.7E-06 47.3 14.4 152 310-464 192-356 (468)
229 PRK15331 chaperone protein Sic 95.8 0.51 1.1E-05 37.7 12.8 86 317-404 48-133 (165)
230 PF10300 DUF3808: Protein of u 95.8 0.7 1.5E-05 44.9 16.6 163 97-262 191-375 (468)
231 COG1729 Uncharacterized protei 95.8 0.3 6.6E-06 42.3 12.4 98 202-300 145-244 (262)
232 KOG3941 Intermediate in Toll s 95.8 0.074 1.6E-06 45.9 8.6 105 126-249 64-173 (406)
233 KOG3941 Intermediate in Toll s 95.7 0.096 2.1E-06 45.2 9.2 88 231-320 64-172 (406)
234 smart00299 CLH Clathrin heavy 95.7 0.76 1.7E-05 36.2 15.8 41 205-246 13-53 (140)
235 KOG2280 Vacuolar assembly/sort 95.6 2.7 5.8E-05 41.9 29.9 325 89-438 427-795 (829)
236 PRK15331 chaperone protein Sic 95.6 0.96 2.1E-05 36.2 15.1 91 348-442 44-134 (165)
237 KOG0543 FKBP-type peptidyl-pro 95.5 0.33 7.1E-06 44.4 12.0 97 342-442 258-355 (397)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.083 1.8E-06 49.3 8.0 98 340-445 74-177 (453)
239 KOG2610 Uncharacterized conser 95.3 0.59 1.3E-05 41.7 12.5 153 141-297 115-273 (491)
240 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.55 1.2E-05 44.1 13.1 66 126-193 72-141 (453)
241 PF13428 TPR_14: Tetratricopep 95.0 0.084 1.8E-06 31.8 4.9 38 415-453 3-40 (44)
242 PF09205 DUF1955: Domain of un 94.9 1.2 2.6E-05 33.9 13.9 136 211-373 14-152 (161)
243 KOG1920 IkappaB kinase complex 94.8 1.7 3.8E-05 45.5 16.2 85 344-440 942-1026(1265)
244 COG3118 Thioredoxin domain-con 94.8 2.6 5.7E-05 37.1 16.9 145 315-464 143-288 (304)
245 PF13170 DUF4003: Protein of u 94.8 3 6.5E-05 37.6 19.3 48 182-229 80-133 (297)
246 PF04184 ST7: ST7 protein; In 94.7 4 8.6E-05 38.9 17.6 56 312-367 265-321 (539)
247 COG4105 ComL DNA uptake lipopr 94.7 2.6 5.6E-05 36.5 19.5 66 92-158 33-100 (254)
248 KOG2114 Vacuolar assembly/sort 94.7 1.6 3.5E-05 43.9 15.0 244 98-370 338-590 (933)
249 PF08631 SPO22: Meiosis protei 94.5 3.4 7.4E-05 37.1 25.1 19 422-440 255-273 (278)
250 COG4105 ComL DNA uptake lipopr 94.5 2.9 6.3E-05 36.1 20.6 55 383-437 174-228 (254)
251 COG3898 Uncharacterized membra 94.4 4 8.6E-05 37.5 32.8 283 106-405 96-392 (531)
252 PF13512 TPR_18: Tetratricopep 94.4 1.9 4.1E-05 33.7 12.4 71 282-352 21-93 (142)
253 KOG2114 Vacuolar assembly/sort 94.4 1.4 3E-05 44.4 13.8 176 167-367 337-516 (933)
254 PF13512 TPR_18: Tetratricopep 94.3 2 4.3E-05 33.5 12.3 58 243-300 19-76 (142)
255 KOG0543 FKBP-type peptidyl-pro 94.1 0.82 1.8E-05 42.0 11.0 85 378-466 259-343 (397)
256 PF07035 Mic1: Colon cancer-as 94.1 2.6 5.7E-05 34.1 14.5 26 189-214 19-44 (167)
257 PF07035 Mic1: Colon cancer-as 93.9 2.8 6.1E-05 33.9 16.5 35 221-255 16-50 (167)
258 KOG4555 TPR repeat-containing 93.7 2.4 5.1E-05 32.4 11.7 91 243-336 52-145 (175)
259 COG3629 DnrI DNA-binding trans 93.7 0.77 1.7E-05 40.5 9.9 72 167-239 156-232 (280)
260 KOG4555 TPR repeat-containing 93.6 2 4.3E-05 32.7 10.4 53 209-262 53-105 (175)
261 COG3629 DnrI DNA-binding trans 93.6 0.99 2.1E-05 39.9 10.3 61 343-404 155-215 (280)
262 KOG1585 Protein required for f 93.5 4.3 9.4E-05 34.8 17.4 56 379-435 193-249 (308)
263 KOG2610 Uncharacterized conser 93.5 3.3 7.1E-05 37.2 13.1 157 175-335 114-276 (491)
264 KOG1941 Acetylcholine receptor 93.3 2.1 4.5E-05 38.8 11.8 203 166-368 45-273 (518)
265 PF10602 RPN7: 26S proteasome 93.3 1.7 3.7E-05 35.9 10.8 64 235-298 37-100 (177)
266 PF13929 mRNA_stabil: mRNA sta 93.2 5.6 0.00012 35.2 14.4 147 97-246 134-290 (292)
267 PF13428 TPR_14: Tetratricopep 92.9 0.41 8.8E-06 28.8 5.1 27 237-263 4-30 (44)
268 KOG1550 Extracellular protein 92.9 11 0.00024 37.7 22.0 181 180-372 228-428 (552)
269 COG0457 NrfG FOG: TPR repeat [ 92.9 5.3 0.00012 33.9 28.6 167 200-369 60-230 (291)
270 COG0457 NrfG FOG: TPR repeat [ 92.6 5.8 0.00013 33.7 29.6 227 212-443 36-266 (291)
271 PF13176 TPR_7: Tetratricopept 92.5 0.31 6.8E-06 27.7 4.0 26 415-440 1-26 (36)
272 PF10602 RPN7: 26S proteasome 92.5 3.1 6.7E-05 34.3 11.4 95 166-262 38-141 (177)
273 COG4649 Uncharacterized protei 92.5 4.8 0.0001 32.5 14.1 53 246-299 70-122 (221)
274 PF13929 mRNA_stabil: mRNA sta 92.0 8 0.00017 34.2 13.5 138 74-211 144-290 (292)
275 KOG1941 Acetylcholine receptor 91.9 9.8 0.00021 34.7 15.2 23 308-330 164-186 (518)
276 PF02259 FAT: FAT domain; Int 91.8 11 0.00024 35.1 21.9 192 170-369 4-212 (352)
277 PRK11906 transcriptional regul 91.8 12 0.00026 35.6 16.0 163 272-439 252-433 (458)
278 PF13170 DUF4003: Protein of u 91.7 10 0.00022 34.3 22.5 131 287-421 78-225 (297)
279 PF04184 ST7: ST7 protein; In 91.6 13 0.00028 35.6 20.5 83 273-355 261-345 (539)
280 PF08631 SPO22: Meiosis protei 91.6 9.9 0.00021 34.1 26.9 18 455-472 253-270 (278)
281 KOG0550 Molecular chaperone (D 91.6 12 0.00025 34.9 22.9 163 200-370 169-350 (486)
282 PF13176 TPR_7: Tetratricopept 91.1 0.57 1.2E-05 26.6 4.0 23 237-259 2-24 (36)
283 PF13431 TPR_17: Tetratricopep 91.0 0.4 8.6E-06 26.9 3.2 22 412-433 12-33 (34)
284 PF07079 DUF1347: Protein of u 90.8 15 0.00032 34.7 36.8 137 71-211 19-179 (549)
285 KOG4570 Uncharacterized conser 90.7 4.6 0.0001 35.9 10.7 102 302-405 60-164 (418)
286 PRK11906 transcriptional regul 90.6 16 0.00035 34.8 17.1 128 168-299 257-400 (458)
287 PF13431 TPR_17: Tetratricopep 90.5 0.36 7.9E-06 27.1 2.7 32 436-468 2-33 (34)
288 PRK09687 putative lyase; Provi 90.4 13 0.00028 33.4 27.7 232 128-386 36-277 (280)
289 PF11207 DUF2989: Protein of u 90.3 4.3 9.3E-05 33.8 9.8 72 181-253 123-197 (203)
290 COG5107 RNA14 Pre-mRNA 3'-end 89.8 18 0.00039 34.1 31.2 146 307-458 398-545 (660)
291 KOG4570 Uncharacterized conser 89.8 4.4 9.5E-05 36.1 9.8 48 286-333 115-162 (418)
292 PF04097 Nic96: Nup93/Nic96; 89.7 25 0.00055 35.7 18.9 89 207-301 266-357 (613)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 4.5 9.7E-05 29.0 7.8 63 109-172 22-84 (103)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 5.9 0.00013 28.4 7.8 47 358-404 24-70 (103)
295 KOG0276 Vesicle coat complex C 87.7 9.8 0.00021 37.2 11.4 151 105-297 597-747 (794)
296 PF00515 TPR_1: Tetratricopept 87.5 1.7 3.7E-05 24.0 4.2 30 414-443 2-31 (34)
297 PF13374 TPR_10: Tetratricopep 87.5 1.5 3.2E-05 25.6 4.2 29 414-442 3-31 (42)
298 PF02259 FAT: FAT domain; Int 87.4 25 0.00053 32.7 25.8 67 269-335 144-213 (352)
299 PF02284 COX5A: Cytochrome c o 87.3 4 8.7E-05 29.6 6.7 46 182-227 28-73 (108)
300 KOG0276 Vesicle coat complex C 87.1 12 0.00026 36.7 11.6 133 235-402 615-747 (794)
301 PF07719 TPR_2: Tetratricopept 87.0 2.1 4.6E-05 23.5 4.5 30 414-443 2-31 (34)
302 PF09613 HrpB1_HrpK: Bacterial 86.2 16 0.00034 29.3 13.1 49 107-157 23-72 (160)
303 PF00637 Clathrin: Region in C 86.2 0.7 1.5E-05 36.6 2.9 84 100-190 13-96 (143)
304 PF02284 COX5A: Cytochrome c o 86.0 11 0.00024 27.4 9.8 60 359-421 28-87 (108)
305 PF10579 Rapsyn_N: Rapsyn N-te 85.9 1.8 3.8E-05 29.7 4.1 48 388-435 18-65 (80)
306 PF09613 HrpB1_HrpK: Bacterial 85.8 17 0.00036 29.2 12.6 15 211-225 56-70 (160)
307 PF11207 DUF2989: Protein of u 85.6 11 0.00024 31.5 9.4 82 208-291 116-198 (203)
308 COG4649 Uncharacterized protei 85.3 19 0.0004 29.3 14.9 141 91-232 56-200 (221)
309 PF13374 TPR_10: Tetratricopep 85.1 2.5 5.5E-05 24.5 4.4 28 235-262 3-30 (42)
310 COG4455 ImpE Protein of avirul 84.7 8.9 0.00019 32.3 8.4 53 170-223 7-59 (273)
311 TIGR02561 HrpB1_HrpK type III 84.6 18 0.00039 28.6 10.5 100 343-451 9-115 (153)
312 PF07163 Pex26: Pex26 protein; 84.6 13 0.00027 32.8 9.6 87 136-222 90-181 (309)
313 PF00515 TPR_1: Tetratricopept 84.4 2.9 6.3E-05 23.0 4.2 26 344-369 4-29 (34)
314 TIGR02561 HrpB1_HrpK type III 83.9 19 0.00042 28.4 10.4 50 107-158 23-73 (153)
315 COG4455 ImpE Protein of avirul 83.9 11 0.00023 31.9 8.5 77 308-385 3-81 (273)
316 PF13181 TPR_8: Tetratricopept 83.5 3.4 7.4E-05 22.7 4.2 30 414-443 2-31 (34)
317 COG1747 Uncharacterized N-term 83.5 45 0.00097 32.3 22.0 179 93-281 65-249 (711)
318 PF07719 TPR_2: Tetratricopept 82.7 3.7 7.9E-05 22.5 4.2 25 344-368 4-28 (34)
319 COG2976 Uncharacterized protei 82.6 27 0.00058 29.1 13.9 144 79-229 35-189 (207)
320 PF00637 Clathrin: Region in C 82.4 0.79 1.7E-05 36.3 1.7 84 347-439 13-96 (143)
321 COG2976 Uncharacterized protei 82.4 27 0.00059 29.0 15.1 89 348-443 96-189 (207)
322 PF10345 Cohesin_load: Cohesin 81.7 64 0.0014 32.9 30.0 399 70-472 72-601 (608)
323 TIGR03504 FimV_Cterm FimV C-te 81.2 3.6 7.7E-05 24.7 3.7 23 382-404 5-27 (44)
324 PF13762 MNE1: Mitochondrial s 80.9 25 0.00055 27.7 9.6 93 120-212 28-128 (145)
325 KOG4648 Uncharacterized conser 80.7 11 0.00023 34.1 8.0 54 314-368 105-158 (536)
326 COG3947 Response regulator con 80.5 42 0.00091 29.9 16.2 101 159-261 222-340 (361)
327 KOG1258 mRNA processing protei 79.9 65 0.0014 31.8 38.0 359 89-462 74-489 (577)
328 COG1747 Uncharacterized N-term 79.5 63 0.0014 31.4 24.4 180 162-349 64-247 (711)
329 PHA02875 ankyrin repeat protei 79.3 60 0.0013 31.0 14.9 197 122-340 23-229 (413)
330 TIGR03504 FimV_Cterm FimV C-te 79.2 5.4 0.00012 23.9 4.1 20 207-226 7-26 (44)
331 PF13762 MNE1: Mitochondrial s 78.5 31 0.00067 27.2 12.0 81 309-389 42-128 (145)
332 PF07163 Pex26: Pex26 protein; 78.4 35 0.00077 30.1 10.1 89 239-329 88-181 (309)
333 PF13174 TPR_6: Tetratricopept 78.3 3.9 8.3E-05 22.2 3.2 22 348-369 7-28 (33)
334 KOG2297 Predicted translation 78.2 51 0.0011 29.6 17.3 173 196-396 162-341 (412)
335 PF13174 TPR_6: Tetratricopept 78.1 3.6 7.9E-05 22.3 3.1 28 416-443 3-30 (33)
336 PRK09687 putative lyase; Provi 78.0 52 0.0011 29.6 28.7 236 196-460 34-279 (280)
337 PF13181 TPR_8: Tetratricopept 77.3 7.7 0.00017 21.2 4.3 27 236-262 3-29 (34)
338 KOG4234 TPR repeat-containing 76.8 43 0.00094 28.0 10.1 91 314-406 103-198 (271)
339 PF07721 TPR_4: Tetratricopept 76.2 4.6 0.0001 20.8 2.9 20 417-436 5-24 (26)
340 PF11848 DUF3368: Domain of un 75.9 11 0.00024 23.1 4.9 33 424-456 13-45 (48)
341 PF10345 Cohesin_load: Cohesin 75.5 99 0.0022 31.5 32.1 197 92-298 28-252 (608)
342 KOG1464 COP9 signalosome, subu 75.5 57 0.0012 28.7 19.0 174 159-333 21-218 (440)
343 PRK15180 Vi polysaccharide bio 75.4 36 0.00078 32.5 10.0 90 244-337 333-422 (831)
344 COG0735 Fur Fe2+/Zn2+ uptake r 75.4 15 0.00032 29.2 6.8 65 397-464 7-71 (145)
345 COG2909 MalT ATP-dependent tra 75.3 1.1E+02 0.0024 32.0 29.1 226 210-438 426-684 (894)
346 KOG1464 COP9 signalosome, subu 75.2 57 0.0012 28.7 19.7 205 122-327 19-252 (440)
347 PRK15180 Vi polysaccharide bio 74.6 83 0.0018 30.2 28.3 129 61-194 292-421 (831)
348 PF10366 Vps39_1: Vacuolar sor 74.4 33 0.00071 25.5 8.0 49 415-463 41-94 (108)
349 PF10366 Vps39_1: Vacuolar sor 74.3 25 0.00055 26.1 7.4 26 274-299 42-67 (108)
350 KOG1550 Extracellular protein 73.5 1E+02 0.0023 30.9 25.2 182 145-338 228-429 (552)
351 PHA02875 ankyrin repeat protei 72.7 77 0.0017 30.3 12.5 209 208-448 8-230 (413)
352 COG4003 Uncharacterized protei 72.5 20 0.00043 24.6 5.7 46 408-454 25-71 (98)
353 COG4785 NlpI Lipoprotein NlpI, 72.4 60 0.0013 27.6 15.1 63 199-262 99-161 (297)
354 PF10579 Rapsyn_N: Rapsyn N-te 72.1 12 0.00025 25.8 4.6 46 246-292 18-64 (80)
355 KOG4077 Cytochrome c oxidase, 72.1 29 0.00063 26.5 7.0 44 184-227 69-112 (149)
356 TIGR02508 type_III_yscG type I 71.6 36 0.00079 24.8 7.7 51 173-229 48-98 (115)
357 PF07575 Nucleopor_Nup85: Nup8 70.9 1.2E+02 0.0026 30.6 16.9 76 326-403 390-465 (566)
358 KOG4077 Cytochrome c oxidase, 70.0 41 0.0009 25.7 7.4 47 359-405 67-113 (149)
359 KOG1258 mRNA processing protei 69.9 1.2E+02 0.0026 30.1 29.1 186 232-427 295-489 (577)
360 cd08819 CARD_MDA5_2 Caspase ac 69.7 36 0.00079 24.0 7.6 38 426-468 49-86 (88)
361 KOG4234 TPR repeat-containing 68.7 70 0.0015 26.9 9.5 95 279-377 103-202 (271)
362 PF07575 Nucleopor_Nup85: Nup8 68.3 47 0.001 33.5 10.1 61 272-334 406-466 (566)
363 smart00028 TPR Tetratricopepti 67.9 11 0.00024 19.3 3.6 28 415-442 3-30 (34)
364 KOG2066 Vacuolar assembly/sort 67.5 1.6E+02 0.0034 30.4 27.8 152 101-262 363-533 (846)
365 KOG2396 HAT (Half-A-TPR) repea 66.3 1.3E+02 0.0029 29.2 21.8 98 304-404 457-558 (568)
366 PF14689 SPOB_a: Sensor_kinase 65.8 24 0.00053 23.0 5.1 28 414-441 24-51 (62)
367 PF06552 TOM20_plant: Plant sp 65.8 75 0.0016 26.2 8.9 111 322-443 7-137 (186)
368 COG3947 Response regulator con 65.6 1E+02 0.0022 27.6 15.4 57 345-402 283-339 (361)
369 COG4785 NlpI Lipoprotein NlpI, 65.1 88 0.0019 26.7 19.5 64 164-228 99-162 (297)
370 PF12926 MOZART2: Mitotic-spin 64.9 46 0.001 23.4 7.5 43 115-157 29-71 (88)
371 KOG4648 Uncharacterized conser 64.9 46 0.001 30.4 8.0 54 241-297 104-157 (536)
372 cd00280 TRFH Telomeric Repeat 64.6 45 0.00097 27.5 7.2 20 138-157 120-139 (200)
373 KOG1586 Protein required for f 64.3 95 0.0021 26.8 20.6 25 314-338 162-186 (288)
374 PRK13342 recombination factor 63.6 1.4E+02 0.0031 28.6 16.1 134 111-263 154-299 (413)
375 PF14689 SPOB_a: Sensor_kinase 63.5 25 0.00054 23.0 4.9 21 240-260 29-49 (62)
376 PF04190 DUF410: Protein of un 63.3 1.1E+02 0.0024 27.2 16.5 27 232-258 88-114 (260)
377 cd08819 CARD_MDA5_2 Caspase ac 63.2 51 0.0011 23.3 7.4 38 318-360 48-85 (88)
378 COG5187 RPN7 26S proteasome re 62.5 1.2E+02 0.0025 27.2 13.9 23 343-365 117-139 (412)
379 KOG2659 LisH motif-containing 62.4 1E+02 0.0022 26.5 9.3 97 126-224 23-128 (228)
380 PF12862 Apc5: Anaphase-promot 61.7 44 0.00095 24.0 6.4 70 387-456 9-85 (94)
381 PF11848 DUF3368: Domain of un 61.1 36 0.00077 20.8 5.2 31 353-383 14-44 (48)
382 KOG0686 COP9 signalosome, subu 60.7 1.5E+02 0.0033 27.9 14.4 94 165-260 151-255 (466)
383 COG5108 RPO41 Mitochondrial DN 60.2 59 0.0013 32.6 8.5 47 134-180 33-81 (1117)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 60.1 34 0.00073 26.3 5.9 44 394-438 81-124 (126)
385 PHA03100 ankyrin repeat protei 59.3 1.6E+02 0.0034 28.8 12.0 250 169-451 37-312 (480)
386 KOG4507 Uncharacterized conser 59.2 43 0.00093 33.0 7.3 86 177-263 620-705 (886)
387 KOG2908 26S proteasome regulat 59.1 1.4E+02 0.003 27.4 9.9 61 344-404 78-143 (380)
388 KOG0687 26S proteasome regulat 58.9 1.4E+02 0.0031 27.2 13.7 25 343-367 106-130 (393)
389 KOG4567 GTPase-activating prot 57.9 62 0.0013 29.1 7.5 70 361-437 263-342 (370)
390 PF11846 DUF3366: Domain of un 57.8 33 0.00071 28.7 6.0 32 126-157 141-172 (193)
391 PF10475 DUF2450: Protein of u 57.7 1.4E+02 0.0031 27.0 10.4 25 238-262 131-155 (291)
392 KOG2066 Vacuolar assembly/sort 57.1 2.4E+02 0.0053 29.2 23.9 154 136-299 363-533 (846)
393 PF11846 DUF3366: Domain of un 56.9 58 0.0013 27.2 7.4 32 231-262 141-172 (193)
394 KOG2422 Uncharacterized conser 56.3 2.2E+02 0.0047 28.4 14.5 55 350-404 351-406 (665)
395 COG0735 Fur Fe2+/Zn2+ uptake r 55.7 65 0.0014 25.5 6.9 29 346-374 25-53 (145)
396 PF09868 DUF2095: Uncharacteri 55.3 51 0.0011 24.5 5.5 43 418-461 66-108 (128)
397 PRK10564 maltose regulon perip 55.2 27 0.00058 31.3 5.0 28 380-407 261-288 (303)
398 PRK10564 maltose regulon perip 54.2 28 0.00061 31.1 5.0 36 202-237 260-295 (303)
399 PF04097 Nic96: Nup93/Nic96; 54.2 2.6E+02 0.0056 28.6 19.2 25 344-368 327-354 (613)
400 KOG4567 GTPase-activating prot 53.8 96 0.0021 28.0 8.0 58 219-283 263-320 (370)
401 PF08424 NRDE-2: NRDE-2, neces 53.7 1.8E+02 0.004 26.7 16.5 78 181-260 48-128 (321)
402 PF06552 TOM20_plant: Plant sp 53.6 1.3E+02 0.0028 24.9 8.4 41 250-300 96-136 (186)
403 KOG2063 Vacuolar assembly/sort 53.2 3.1E+02 0.0067 29.2 23.0 116 131-246 506-638 (877)
404 KOG2297 Predicted translation 53.1 1.8E+02 0.0038 26.4 16.4 173 126-326 162-341 (412)
405 COG5108 RPO41 Mitochondrial DN 52.6 1.4E+02 0.003 30.2 9.5 90 204-298 33-130 (1117)
406 KOG0890 Protein kinase of the 52.5 4.8E+02 0.01 31.2 25.1 63 376-443 1670-1732(2382)
407 cd00280 TRFH Telomeric Repeat 51.1 1.3E+02 0.0028 24.9 7.7 21 242-262 119-139 (200)
408 PF03745 DUF309: Domain of unk 51.0 68 0.0015 21.0 5.8 46 176-221 11-61 (62)
409 KOG0890 Protein kinase of the 50.8 5.1E+02 0.011 31.0 23.9 306 135-472 1389-1726(2382)
410 KOG2582 COP9 signalosome, subu 50.7 2.1E+02 0.0046 26.6 18.9 54 318-371 289-346 (422)
411 PF11663 Toxin_YhaV: Toxin wit 50.4 17 0.00036 28.1 2.6 29 284-314 108-136 (140)
412 KOG2659 LisH motif-containing 50.2 1.7E+02 0.0036 25.2 10.1 58 205-262 70-131 (228)
413 COG5187 RPN7 26S proteasome re 49.8 1.9E+02 0.0042 25.9 12.4 64 201-264 117-185 (412)
414 PRK10941 hypothetical protein; 49.7 1.9E+02 0.0042 25.8 10.6 78 379-459 184-262 (269)
415 PF09670 Cas_Cas02710: CRISPR- 49.1 1.7E+02 0.0036 27.8 9.7 55 138-193 140-198 (379)
416 KOG2034 Vacuolar sorting prote 49.1 3.5E+02 0.0075 28.6 27.1 170 102-297 366-556 (911)
417 KOG0292 Vesicle coat complex C 48.9 1.4E+02 0.0031 31.3 9.3 132 137-300 651-782 (1202)
418 smart00777 Mad3_BUB1_I Mad3/BU 48.9 1.2E+02 0.0026 23.3 8.2 44 431-474 81-125 (125)
419 smart00638 LPD_N Lipoprotein N 48.9 3E+02 0.0065 27.8 26.8 64 127-195 308-371 (574)
420 PRK14956 DNA polymerase III su 48.7 2.7E+02 0.0058 27.3 10.9 37 198-234 247-283 (484)
421 KOG2908 26S proteasome regulat 47.9 2.3E+02 0.0049 26.1 10.4 74 310-383 79-163 (380)
422 TIGR02508 type_III_yscG type I 47.0 1.1E+02 0.0024 22.4 8.6 58 138-202 48-105 (115)
423 PF14669 Asp_Glu_race_2: Putat 46.5 1.7E+02 0.0038 24.4 14.7 58 381-438 137-206 (233)
424 PF04190 DUF410: Protein of un 46.4 2.1E+02 0.0046 25.4 18.2 20 386-405 151-170 (260)
425 PF09868 DUF2095: Uncharacteri 46.3 86 0.0019 23.4 5.5 46 88-140 61-106 (128)
426 PF09454 Vps23_core: Vps23 cor 46.2 74 0.0016 21.1 4.9 47 413-460 8-54 (65)
427 KOG0686 COP9 signalosome, subu 45.9 2.7E+02 0.0058 26.4 14.3 93 130-224 151-254 (466)
428 PF04762 IKI3: IKI3 family; I 45.6 3.5E+02 0.0076 29.4 12.3 45 245-297 883-927 (928)
429 PF11663 Toxin_YhaV: Toxin wit 45.5 26 0.00057 27.0 3.0 31 318-350 107-137 (140)
430 PF09670 Cas_Cas02710: CRISPR- 45.3 2.7E+02 0.006 26.3 11.7 55 173-228 140-198 (379)
431 KOG4507 Uncharacterized conser 44.8 1.4E+02 0.0031 29.6 8.3 103 353-459 619-721 (886)
432 KOG3364 Membrane protein invol 44.1 1.5E+02 0.0034 23.1 10.0 69 374-443 30-101 (149)
433 PRK11639 zinc uptake transcrip 44.0 1.5E+02 0.0032 24.3 7.5 23 384-406 33-55 (169)
434 KOG4642 Chaperone-dependent E3 43.9 2.2E+02 0.0048 24.8 9.3 120 316-439 20-143 (284)
435 PF10255 Paf67: RNA polymerase 43.9 45 0.00098 31.6 5.0 28 412-439 163-190 (404)
436 PRK09462 fur ferric uptake reg 43.8 1.4E+02 0.003 23.6 7.2 35 321-355 32-66 (148)
437 COG2178 Predicted RNA-binding 43.7 1.9E+02 0.0042 24.1 9.6 18 424-441 132-149 (204)
438 cd07153 Fur_like Ferric uptake 43.5 60 0.0013 24.3 4.9 45 420-464 7-51 (116)
439 smart00386 HAT HAT (Half-A-TPR 42.9 51 0.0011 17.2 4.1 15 391-405 2-16 (33)
440 PF11838 ERAP1_C: ERAP1-like C 42.9 2.6E+02 0.0057 25.4 22.6 84 250-336 146-231 (324)
441 PRK11639 zinc uptake transcrip 42.0 1.8E+02 0.0039 23.8 7.7 58 298-356 18-75 (169)
442 KOG0687 26S proteasome regulat 41.5 2.8E+02 0.0061 25.4 15.0 99 234-334 104-209 (393)
443 PRK09857 putative transposase; 41.2 2.4E+02 0.0053 25.5 9.1 64 311-375 211-274 (292)
444 PF12862 Apc5: Anaphase-promot 41.1 1.3E+02 0.0029 21.5 6.7 23 240-262 47-69 (94)
445 PF09454 Vps23_core: Vps23 cor 40.8 87 0.0019 20.8 4.6 32 198-229 7-38 (65)
446 PRK09857 putative transposase; 40.5 2E+02 0.0043 26.1 8.4 64 381-447 211-274 (292)
447 PF11817 Foie-gras_1: Foie gra 40.4 1.7E+02 0.0037 25.6 7.9 61 236-297 180-244 (247)
448 PF06957 COPI_C: Coatomer (COP 40.3 1.6E+02 0.0035 28.2 7.9 175 275-468 122-355 (422)
449 PF11838 ERAP1_C: ERAP1-like C 40.3 2.9E+02 0.0063 25.2 19.2 146 287-440 146-302 (324)
450 PF11817 Foie-gras_1: Foie gra 40.1 1.6E+02 0.0034 25.9 7.6 61 273-333 180-245 (247)
451 PF01475 FUR: Ferric uptake re 40.0 51 0.0011 24.9 4.0 50 417-466 11-60 (120)
452 PRK11619 lytic murein transgly 39.9 4.4E+02 0.0096 27.2 34.6 343 79-438 84-464 (644)
453 PF02847 MA3: MA3 domain; Int 39.8 1.5E+02 0.0033 21.9 7.1 19 241-259 9-27 (113)
454 PF02847 MA3: MA3 domain; Int 39.6 1.5E+02 0.0032 22.0 6.5 23 134-156 7-29 (113)
455 COG2909 MalT ATP-dependent tra 39.5 4.9E+02 0.011 27.6 30.2 225 175-401 426-684 (894)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 39.2 1.8E+02 0.0038 22.4 10.0 43 431-473 81-124 (126)
457 PF09477 Type_III_YscG: Bacter 38.6 1.6E+02 0.0036 21.9 8.5 90 215-314 22-111 (116)
458 PF15297 CKAP2_C: Cytoskeleton 38.5 2.9E+02 0.0064 25.6 8.9 44 166-209 142-185 (353)
459 KOG1839 Uncharacterized protei 38.4 4.8E+02 0.01 29.0 11.6 24 198-221 972-995 (1236)
460 KOG0292 Vesicle coat complex C 36.5 5.5E+02 0.012 27.3 11.7 108 352-459 1002-1131(1202)
461 PF04090 RNA_pol_I_TF: RNA pol 36.4 2.6E+02 0.0057 23.6 11.6 28 273-300 43-70 (199)
462 KOG1586 Protein required for f 36.3 2.9E+02 0.0063 24.1 19.3 18 281-298 83-100 (288)
463 PRK13342 recombination factor 36.1 4E+02 0.0087 25.6 18.7 30 284-313 243-272 (413)
464 PF14853 Fis1_TPR_C: Fis1 C-te 35.7 1.1E+02 0.0025 19.2 6.1 25 419-443 7-31 (53)
465 KOG1308 Hsp70-interacting prot 35.6 38 0.00081 30.9 2.9 92 142-236 127-219 (377)
466 PF14669 Asp_Glu_race_2: Putat 35.2 2.7E+02 0.0059 23.3 14.4 54 312-365 138-205 (233)
467 PRK08691 DNA polymerase III su 34.9 3.1E+02 0.0066 28.4 9.4 99 104-205 175-286 (709)
468 KOG3636 Uncharacterized conser 34.7 4.2E+02 0.0091 25.4 15.8 37 370-406 177-213 (669)
469 PRK14958 DNA polymerase III su 34.7 3.6E+02 0.0078 26.8 9.8 36 197-233 244-279 (509)
470 PRK09462 fur ferric uptake reg 34.3 1.6E+02 0.0035 23.3 6.2 32 147-178 35-66 (148)
471 KOG0989 Replication factor C, 34.3 3.3E+02 0.0071 24.9 8.3 98 110-232 191-288 (346)
472 KOG2396 HAT (Half-A-TPR) repea 34.1 4.6E+02 0.01 25.7 33.6 94 373-471 456-553 (568)
473 COG0790 FOG: TPR repeat, SEL1 34.0 3.5E+02 0.0075 24.2 22.6 17 321-337 206-222 (292)
474 PF10155 DUF2363: Uncharacteri 34.0 2.2E+02 0.0047 21.9 10.7 39 187-225 86-124 (126)
475 PF02607 B12-binding_2: B12 bi 33.2 74 0.0016 21.7 3.7 37 425-461 13-49 (79)
476 PRK06645 DNA polymerase III su 33.1 5E+02 0.011 25.8 10.7 33 200-233 259-291 (507)
477 PF08424 NRDE-2: NRDE-2, neces 33.0 3.9E+02 0.0085 24.6 19.8 119 288-408 48-186 (321)
478 PF09986 DUF2225: Uncharacteri 32.7 3.2E+02 0.0069 23.4 11.0 51 393-443 142-195 (214)
479 PF03745 DUF309: Domain of unk 32.5 1.5E+02 0.0032 19.4 5.5 13 320-332 13-25 (62)
480 PF07678 A2M_comp: A-macroglob 32.1 2.2E+02 0.0047 25.0 7.2 84 357-442 115-221 (246)
481 PRK14951 DNA polymerase III su 32.0 5.6E+02 0.012 26.2 10.7 102 104-209 180-294 (618)
482 PF11768 DUF3312: Protein of u 31.3 5.4E+02 0.012 25.6 10.3 123 312-443 414-537 (545)
483 PRK10941 hypothetical protein; 30.2 4E+02 0.0087 23.8 10.9 61 202-263 184-244 (269)
484 KOG0403 Neoplastic transformat 29.8 5.2E+02 0.011 25.0 20.0 62 379-443 512-573 (645)
485 COG2812 DnaX DNA polymerase II 29.8 3.7E+02 0.0079 26.7 8.7 88 32-124 136-228 (515)
486 cd07153 Fur_like Ferric uptake 29.6 1.4E+02 0.0029 22.3 4.9 33 216-248 17-49 (116)
487 PF12816 Vps8: Golgi CORVET co 28.9 2.5E+02 0.0054 23.6 6.7 75 374-455 20-94 (196)
488 PF12926 MOZART2: Mitotic-spin 28.8 2.1E+02 0.0047 20.2 8.2 42 292-333 29-70 (88)
489 PF02631 RecX: RecX family; I 28.4 2.6E+02 0.0057 21.1 11.1 48 324-372 10-57 (121)
490 KOG1308 Hsp70-interacting prot 28.2 47 0.001 30.3 2.3 118 317-441 125-243 (377)
491 KOG0376 Serine-threonine phosp 28.2 1.6E+02 0.0035 28.4 5.8 50 353-404 16-66 (476)
492 COG0790 FOG: TPR repeat, SEL1 28.2 4.4E+02 0.0094 23.6 24.7 25 428-452 252-276 (292)
493 PF06855 DUF1250: Protein of u 28.2 77 0.0017 19.2 2.6 39 82-120 3-41 (46)
494 PF00244 14-3-3: 14-3-3 protei 27.3 4.2E+02 0.0091 23.1 9.7 58 239-298 6-64 (236)
495 COG2137 OraA Uncharacterized p 27.3 3.5E+02 0.0077 22.2 12.9 109 326-439 55-164 (174)
496 COG4003 Uncharacterized protei 26.4 2.3E+02 0.0049 19.7 5.1 29 102-131 39-67 (98)
497 PF15297 CKAP2_C: Cytoskeleton 26.4 5.3E+02 0.012 24.0 8.9 44 415-458 142-185 (353)
498 PLN03025 replication factor C 26.1 5.1E+02 0.011 23.7 13.4 32 120-153 171-202 (319)
499 PF04910 Tcf25: Transcriptiona 26.1 5.6E+02 0.012 24.1 19.5 57 348-404 110-167 (360)
500 PRK14958 DNA polymerase III su 26.1 6.6E+02 0.014 25.0 11.2 35 163-198 245-279 (509)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-61 Score=487.93 Aligned_cols=379 Identities=19% Similarity=0.257 Sum_probs=274.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.+....|+++|..+.. |+..+|+.++..+++.++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3445555555544321 66777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR--H 228 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 228 (475)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777765 4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
|+.||..+|++++.+|++.|++++|.++|++|.+ .+++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5677777777777777777777777777777777 34567777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777777655 66777777777777777777777777777777777777777766544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-60 Score=479.73 Aligned_cols=411 Identities=17% Similarity=0.248 Sum_probs=391.0
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011919 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
..+...+..++.++ ..++...|+++|.++....-..++...+..++..+.+.+..+.|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 33444555555654 67889999999999977655677888888899999999999999999998864 89999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
++.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765678999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
|..+|+.||.+|++.|++++|.++|++|.+.|+.| +..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011919 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+.+|.+.|+.+.|.++.+
T Consensus 761 L~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 761 LVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999998764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-58 Score=465.13 Aligned_cols=399 Identities=16% Similarity=0.175 Sum_probs=359.5
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..+.+..|+++|.|+....++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33566677665 67889999999999987777889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|+.+||.+|.+|++.|++++|+++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988864 68889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999988888888888888888888888888888885 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQGPYVDKIVE 456 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 456 (475)
+|+.||.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 88888888888888888888888888888876 888888888888888888888888888876 588888888888888
Q ss_pred HHHhcCCHhHHhhcccc
Q 011919 457 HLKKSGDEELITNLPKI 473 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~~ 473 (475)
+|.+.|+.++|.++.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 88888888888877653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.2e-55 Score=439.33 Aligned_cols=398 Identities=17% Similarity=0.178 Sum_probs=359.4
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011919 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++...+..++..| ..++...+.+++..+ ...|+.|+..+|+.++..+.+.|+++.|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 356788899999987 566777788887655 4568999999999999999999999999999999854 7999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+ .++.||..+|+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999864 5889999999999999999999999999988 45789999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999865 57788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
||..||+.++.+|++.|++++|.++|+.|.+ .|+.| +..+|+.++++|++.|++++|.+++++| ++.|+..+|+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 9999999999999999999999999999986 57766 7889999999999999999999988765 5678888888
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011919 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.+|...|+.+.++++.+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 88888888888888776543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-54 Score=443.67 Aligned_cols=396 Identities=18% Similarity=0.174 Sum_probs=296.7
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011919 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...++.++..+ ..+....|+++|..+. ..++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 334455555553 4566666777666553 45677777777777777777777777777777777778888888888888
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 888888888888888888864 6778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888864 6778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 875 5889999998888888888888888888888777777666666666666666666666666666554 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML-KKRIWLQGPYVDKIV 455 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~ 455 (475)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 666666666666666666666666666666654 56666666666666666666666666666 456666666666666
Q ss_pred HHHHhcCCHhHHhhccc
Q 011919 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.++|.++.+
T Consensus 633 ~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 633 DLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 66666666666666553
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-53 Score=437.09 Aligned_cols=399 Identities=16% Similarity=0.158 Sum_probs=302.1
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH
Q 011919 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (475)
+++...+.++..+ ..+....|+.+|..+. ..+..|+..+|..++..+...+..+.+..++..+.+.+..++...+|.+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3444455555553 5667777777777654 3466677777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+..|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 7777777777777777777764 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
+.+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777754 577777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777775 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++++.|.+.|+.++..+++.++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P--d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 7777777777777777777777777777777765 66777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHhHHhhccc
Q 011919 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.+.|.++.+
T Consensus 432 ~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 432 EMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 77777777777776653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=7e-24 Score=223.69 Aligned_cols=386 Identities=11% Similarity=0.017 Sum_probs=327.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.+.-..... +.+...+..+...+...|+.+.|...++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 511 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 4677788888877665432 3466777788888888999999999999887765 566777888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.+++.+.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999987654 4577889999999999999999999999987654 4567778888899999999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++.+...+ |+..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3467888999999999999999999999998753 5677788888999999999999999999998864 555777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+..++.+.|++++|.+.++.+.+.... +...+..+...|...|+.++|.+.|+++.+.. +.+...+..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999886543 67888999999999999999999999999865 45678889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011919 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
|+ .+|+.+++++.+.. | .+..++..+...+...|++++|.++++++++.+ +.++.++..+..++.+.|+.++|.+
T Consensus 818 ~~-~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA--P-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc-HHHHHHHHHHHhhC--C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99 88999999998864 2 366788899999999999999999999999988 5589999999999999999999998
Q ss_pred cccc
Q 011919 470 LPKI 473 (475)
Q Consensus 470 l~~~ 473 (475)
+++.
T Consensus 893 ~~~~ 896 (899)
T TIGR02917 893 ELDK 896 (899)
T ss_pred HHHH
Confidence 8753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.5e-23 Score=219.47 Aligned_cols=376 Identities=12% Similarity=0.046 Sum_probs=206.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|..++.-... ..+.+...+..+...+...++++.|.+.++.+.+.. +.+...+..+...+...|++++|..
T Consensus 444 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555554443322 223344555556666666666666666666665543 3344455555556666666666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 2345555666666666666666666666655433 3344555555666666666666666666655432
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3345556666666666666666666666665532 2344455555666666666666666666655432 22345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555556666666666655555442 23444555555555566666666666655544 233344445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+.++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++++.. +.++..+..+...+.+.|+
T Consensus 751 ~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555555555555543 1244555555555555555555555555555554 4444455555555555555
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=185.57 Aligned_cols=298 Identities=13% Similarity=0.108 Sum_probs=173.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhhHHHHHHHHHhcCChh
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD---TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~ 181 (475)
...++++.|...+..+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44566667777777766653 34455666666666677777777777766665321111 234566666666667777
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777776666542 34555666666666667777777776666665442221 113344555566666666666666
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++.+.+..
T Consensus 204 ~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 204 KKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666532 233445555666666666666666666666654322223445556666666666666666666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 011919 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.|
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33334455666666666666666666665544 4565566555554443 33566666666666665554433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.5e-21 Score=185.28 Aligned_cols=304 Identities=14% Similarity=0.071 Sum_probs=252.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhc
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 212 (475)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 335567899999999999999865 34667899999999999999999999999987532221 25678889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 289 (475)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. ..+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999998763 45778999999999999999999999999987531 1111 2245667778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|.+.++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3346678888899999999999999999999865443356788999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC
Q 011919 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~ 446 (475)
. .|+...+..+...+.+.|++++|..+++++.+.. | +...++.++..++. .|+.++++.++++|.++++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6 5676777888999999999999999999998863 3 66788888877764 569999999999999998887
Q ss_pred Chh
Q 011919 447 QGP 449 (475)
Q Consensus 447 ~~~ 449 (475)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 776
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.2e-18 Score=169.80 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=177.9
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+.++.-...... ........+.......|+++.|.+.++.+.+.. +-+...+..+...+.+.|++++|.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666544433221 122233333344445666666666666666543 444555555566666666666666
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666665532 2345556666666666666666666666554432 1222222222 23556666666666666665543
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE----ALGILDRMEALGCAPN 305 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 305 (475)
..++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...+++..+.. +.+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 22333344444556666666666666666666532 3345555556666666666654 566666665542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIR 384 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~ 384 (475)
...+..+...+...|++++|...+++....... +...+..+..++.+.|++++|.+.|+++.+. .|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 455566666666666666666666666654432 3344555666666666666666666666644 333322 222344
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 385 ELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++...|+.++|...|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 556666666666666666654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2e-17 Score=165.37 Aligned_cols=365 Identities=12% Similarity=-0.036 Sum_probs=262.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011919 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.....+...++++.|+..++...+. .|+...|..+..+|.+.|++++|+..++...+.+ +.+...|..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444556677778888777776654 4566667777777777788888888777776653 235566777777777777
Q ss_pred ChhHHHHHHHHhccCC-----------------------------CCCChhhHHHH------------------------
Q 011919 179 DMIAADELMKGMGLID-----------------------------LYPDIITYVSM------------------------ 205 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l------------------------ 205 (475)
++++|+..|......+ .+++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7777765543322110 00000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 206 ------IKGF------CNAGRLEDACGLFKVMKRHG-C-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 206 ------i~~~------~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~ 365 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVT 365 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcH
Confidence 0000 12357889999999988765 2 2345678888888999999999999999998743 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++.++.+.. +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 678888889999999999999999988763 335778888889999999999999999999887643 466677888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---ch-hhHHHHHHHHHhcC
Q 011919 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DS-DIHSVLLLGLCRKN 427 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~-~~~~~li~~~~~~g 427 (475)
.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++..+....... +. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988652 234678888888999999999999999998886421100 00 11222223334469
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
++++|.+++++.+... +.+...+..+.+.+.+.|++++|.+..+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998876 55556788899999999999999876643
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.6e-17 Score=176.91 Aligned_cols=386 Identities=10% Similarity=0.002 Sum_probs=232.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHH------------HHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMK------------VIFN 137 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~li~ 137 (475)
.++.+.|...|....... +.+...+..+...+.+.+++++|+..++...+..... ....+. ....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 566666776666654432 2355666666677777777777777777766543211 111111 1123
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 4556777777777777776653 2345566667777777777777777777776543 223333333333332 122333
Q ss_pred HHHHHHHHHHCCCC--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011919 218 ACGLFKVMKRHGCA--------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 218 a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
|..+++.+...... .....+..+...+...|++++|.+.|++..+.. |.+...+..+...|.+.|++++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHH
Confidence 33333222111000 000112223333444555555555555554432 2233344444555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTI--------------------------------------------STLIKGFCVEGNLDEA 325 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g~~~~a 325 (475)
|...++++.+... .+...+ ..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555443211 111111 1233445566677777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++.+.+.
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666651 22345567778889999999999999999999763 335678888999999999999999999988875
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--L---QGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 406 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
. +.+..++..+..++.+.|++++|.+++++++..... + +...+..+...+.+.|+.++|.+.++.|
T Consensus 667 ~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 667 A---NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred C---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 235667788888999999999999999999876422 2 2246667788999999999998876543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.9e-18 Score=170.97 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=275.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
..++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345667788899999999999988865 4445566666677778999999999999998864 34677888899999999
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++++|.+.+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998754 456778888999999999999999999988776433 33344333 3488899999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE----AYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~ 333 (475)
+.+.+.. ..++...+..+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...++...
T Consensus 201 ~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9987742 12344455566778899999999999999998764 3456778888999999999986 899999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.... +...+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|...++.+.+.. | .+
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P-~~ 351 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G-VT 351 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c-cc
Confidence 87643 6778999999999999999999999999976 344 5567778889999999999999999999864 2 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
...+..+..++...|++++|.+.|++.++......+..|...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 344555677889999999999999999988644334445433333
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=9.1e-17 Score=163.70 Aligned_cols=404 Identities=9% Similarity=-0.001 Sum_probs=300.0
Q ss_pred cCCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhH
Q 011919 54 KAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132 (475)
Q Consensus 54 ~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (475)
...+++..+..-+.-. ..++...|++.+.-... .-+.+...+..+...+...++++.|.++++...+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456777777666653 68899999987666543 123455567888889999999999999999988764 5567777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 212 (475)
..+..++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788889999999999999999998763 34566 8888999999999999999999998765 44566667788888889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCcHH-HHH--
Q 011919 213 GRLEDACGLFKVMKRHGCAANL------VAYSALLDGIC-----RLGSM---ERALELLGEMEKEGGDCSPNVV-TYT-- 275 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~-- 275 (475)
+..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+... ..|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-~~p~~~~~~~~a 239 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-DNPDATADYQRA 239 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-cCCccchHHHHH
Confidence 999999998886654 2221 11222233222 22334 778888888885311 122221 111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHH
Q 011919 276 --SVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVV 349 (475)
Q Consensus 276 --~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 349 (475)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1134456779999999999999887532 332 22335678999999999999999987654321 1244666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGV-----------KPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
++...|++++|.++++.+.+... .|+. ..+..+...+...|+.++|++.++++.... |.+...
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~l 395 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQGL 395 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 88999999999999999886521 1232 244556678889999999999999998864 346888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+..+...+...|++++|++.+++.+... |.+...+......+.+.|++++|+.+++
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999887 6667777788889999999999988764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-18 Score=159.59 Aligned_cols=362 Identities=14% Similarity=0.057 Sum_probs=237.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHH-HH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN-VI 171 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll 171 (475)
-.+.|..+..++..+|+.+.|+.+++.+.+.. +-..+.|.-+..++...|+.+.|.+.|....+. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45678888888899999999999999888865 556788888888888889888888888887764 355443322 33
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+-..|+.++|...+.+..+.. +-=...|..|...+-..|+...|++.|++.++.... -...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 33344677777777776665532 222455677777777777777777777777765311 2456666777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
+|...|.+..... +-..+++..+...|...|+.|.|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.|+
T Consensus 270 ~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 7777777666532 234555666666666677777777777766654 333 4566777777777777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
+.+..... .....+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|...+++..+.. |
T Consensus 345 kaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P 419 (966)
T KOG4626|consen 345 KALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--P 419 (966)
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--c
Confidence 76664432 2344566666777777777777777666643 343 3455666666666777777777777666632 2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.-...|+.+...|-..|+.++|++.+.+.+..+ |-=...++.+...+..+|+.++|..-.
T Consensus 420 -~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 420 -TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred -hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 235566666667766777777777776666655 333445566666677777766665543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.6e-16 Score=169.36 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=265.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhhHH-----------
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIYN----------- 168 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~----------- 168 (475)
...+...++++.|+..++...+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345567899999999999988865 5578888889999999999999999999988754221 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 169 -NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 169 -~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
.....+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 22446778999999999999998765 4566778888999999999999999999999864 335666777777764 5
Q ss_pred CChHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 248 GSMERALELLGEMEKEGGD------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
++.++|..+++.+...... .......+..+...+...|++++|++.+++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999988765432100 00112356678888999999999999999998864 2256677888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------------------------- 370 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------- 370 (475)
+++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999875432 2333333333334444444444444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 --------GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..+.+...+..+...+.+.|+.++|+..++++.+.. +.+...+..++..|...|++++|++.++...+.
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 012344556667777888899999999999888864 346788888899999999999999999987765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 443 RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
. +.+......+..++.+.|++++|.++++
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 4566677778888888999998887664
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.3e-16 Score=157.80 Aligned_cols=361 Identities=13% Similarity=0.011 Sum_probs=277.5
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|...... .|+...|..+...+...++++.|++.++...+.. +.+...|..+..++...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 468889999999887643 3567788888888999999999999999988875 556778888899999999999998
Q ss_pred HHHHhcccCC-C----------------------------CCCHhhHHHH------------------------------
Q 011919 150 WVLRKMPEFD-L----------------------------RPDTIIYNNV------------------------------ 170 (475)
Q Consensus 150 ~~~~~~~~~~-~----------------------------~~~~~~~~~l------------------------------ 170 (475)
.-|......+ . +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 7654332110 0 0000000000
Q ss_pred HHHH------HhcCChhHHHHHHHHhccCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 171 IRLF------CEKGDMIAADELMKGMGLID-L-YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 171 l~~~------~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+... ...+++++|.+.|++....+ . +.....|+.+...+...|++++|+..+++..+.. +-....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999988654 2 2345678888888999999999999999998863 224668888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
.+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999998853 4567889999999999999999999999998864 33567777888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL------ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~ 396 (475)
++|+..|+..++... .+...|+.+...+...|++++|.+.|++..+.....+.. .++.....+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999987643 256788999999999999999999999988653211111 1122222334469999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++++..+.. | .+...+..+...+.+.|++++|+++|++..+..
T Consensus 529 ~~~~kAl~l~--p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 529 NLCEKALIID--P-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhcC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999988864 2 356678999999999999999999999998764
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-17 Score=152.12 Aligned_cols=356 Identities=16% Similarity=0.077 Sum_probs=297.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH-HHHHHHHHcCCHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAM 149 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~ 149 (475)
.++.+.|++.+..+..... .....|..+...+...|+.+.|.+.+.+..+. .|+..... .+-......|+..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7888899998888765432 45778888999999999999999999887775 45544333 3555677789999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..|.+.++.. +-=...|..|...+-..|+...|+..|++..+.+ +.=...|-.|...|...+.+++|+..|.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9998887753 1234678999999999999999999999998654 2336788899999999999999999999888763
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.....+..+...|...|+++-|+..|++..+.. |.-...|+.|..++-..|++.+|.+.+.+..... +--....
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3356788889999999999999999999999853 2336789999999999999999999999988763 2345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCL 388 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 388 (475)
+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+-..|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHH
Confidence 88999999999999999999998875432 24568999999999999999999999998 45787 4788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+++.|.+.+.+.+..+ | .-.+.++.|...|-..|+..+|+.-+++.++..
T Consensus 435 ~g~v~~A~q~y~rAI~~n--P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN--P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hhhHHHHHHHHHHHHhcC--c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999865 2 356889999999999999999999999999876
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.9e-15 Score=150.13 Aligned_cols=391 Identities=10% Similarity=0.024 Sum_probs=237.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+..|........-.+ +..+ .++..+...|+.++|+..++.... ..+........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555555544432221100 1112 444444555555555555555541 11222222222233555555566666
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6665555543 123444445555555555555565555555543 2333333333223323344434555555555543
Q ss_pred CCcCHHHHHHHHHHHHhcCCh------------------------------------------------HHHHHHHHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSM------------------------------------------------ERALELLGEME 261 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~------------------------------------------------~~a~~~~~~~~ 261 (475)
+-+...+..++.++.+.|-. +.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 12333434444433333322 23333444443
Q ss_pred hcCCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 262 KEGGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 262 ~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
..-...|+....| --.+-++...|++.++++.++.+...|.+....+-..+..+|...+.+++|..+++.+.....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 3211223322222 223557788899999999999999888665666888899999999999999999999876542
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 011919 338 -----VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-------------VKPDGLA-CSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 338 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~ 398 (475)
.++......|.-+|...+++++|..+++++.+.. ..||-.. +..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233335778889999999999999999998731 1223222 33456678889999999999
Q ss_pred HHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
++++.... |-|......+...+...|++.+|.+.++...... |.+..+......++...|++.+|+++.
T Consensus 439 le~l~~~a---P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 439 LEDLSSTA---PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99998864 3588899999999999999999999997777775 667777888888999999999997765
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.4e-15 Score=153.31 Aligned_cols=371 Identities=9% Similarity=-0.007 Sum_probs=272.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...+.-..... +.+......+...+...++++.|...++...+.. +.+.. +..+..++...|+.++|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHH
Confidence 5788899999888765442 3456667788888899999999999999998874 55666 888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------hhHHHHHHHHH-----hcCCH---
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------ITYVSMIKGFC-----NAGRL--- 215 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~--- 215 (475)
..++++.+.. +.+...+..+..++...|..+.|++.++.... .|+. .....+++... ..+++
T Consensus 137 ~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 137 RAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 9999999864 33566667788888899999999999987764 2331 11222233222 22234
Q ss_pred HHHHHHHHHHHHC-CCCcCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011919 216 EDACGLFKVMKRH-GCAANLV-AYS----ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 216 ~~a~~~~~~m~~~-g~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+...+.+...+ +..+|...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHH
Confidence 7788888888864 2223221 111 113445677999999999999988532122223333 5778999999999
Q ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----------VSS---GGCYSSLVVELV 352 (475)
Q Consensus 290 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~ 352 (475)
|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987643211 134566677788999999999999999987532 122 234566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. | .+...+...+..+.+.|++++|
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--P-d~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--P-RNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--C-CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999998763 3346778888888999999999999999999865 3 4677888888889999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH
Q 011919 433 AKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.++++++++.. |+......+-+
T Consensus 447 ~~~~~~ll~~~--Pd~~~~~~~~~ 468 (765)
T PRK10049 447 DVLTDDVVARE--PQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHH
Confidence 99999999875 44444333333
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=9.2e-15 Score=146.55 Aligned_cols=368 Identities=11% Similarity=0.013 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
.|...+ +..+.|+.+.|++.|++..+.. +-+ ...+ .++..+...|+.++|+..+++..... +........+...+
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 344433 5567899999999999998764 222 2344 78888888999999999999998311 12233333335688
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 88899999999999998876 455777778889999999999999999999886 566666655555555567776799
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------
Q 011919 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD--------------------------------------- 295 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------------------------------------- 295 (475)
+.++++.+.. |.+...+..+..++.+.|-...|.++.+
T Consensus 190 ~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 190 QASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999863 3456666666667666665444444332
Q ss_pred ---------HHHH-cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 296 ---------RMEA-LGCAPNRV-----TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 296 ---------~m~~-~~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
.+.. .+-.|... ...-.+-++...|+..++++.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2221 11112211 11233456778899999999999999888665566788899999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCCch-hhHHHHHHHH
Q 011919 361 EKLFSKMLASG-----VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF-----------LSSVDS-DIHSVLLLGL 423 (475)
Q Consensus 361 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~-~~~~~li~~~ 423 (475)
+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|.+|- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997642 122334457889999999999999999999998321 222222 3345567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
...|+..+|.+.++++.... |-|..........+...|+...|++.++.+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 89999999999999998888 899999999999999999999999988653
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.4e-15 Score=130.48 Aligned_cols=362 Identities=16% Similarity=0.165 Sum_probs=225.0
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH--HHHcCCHHHH-HHHHHhcccCC-------------------CCCC
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL--CEKARLANEA-MWVLRKMPEFD-------------------LRPD 163 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A-~~~~~~~~~~~-------------------~~~~ 163 (475)
..+....+.-+++.|.+.|++.+...--.|+.. |....++--| .+-|-.|...| .+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 345666677777888888777777766666552 2222211111 11122222211 1235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..+|.++|.++|+-...+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 667788888888888888888888877776667788888888776543332 6677778877778888888888888
Q ss_pred HHhcCChHH----HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHH
Q 011919 244 ICRLGSMER----ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEA----LGCAP----NRVTIS 310 (475)
Q Consensus 244 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~p----~~~~~~ 310 (475)
..+.|+++. |.+++.+|.+ .|+.|...+|..+|..+++.++..+ +..++.++.. ...+| |...|.
T Consensus 283 ~akfg~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 888886654 4456667777 5577888888888887777777644 3334444332 11222 344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGG----SVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 383 (475)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66777777777777777666554321 1121 1235556666677777777777777777665566667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCC-----------------------------------
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGF-----------------LSSV----------------------------------- 411 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~----------------------------------- 411 (475)
++....|.++-..++|..++..|- +|.|
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 777777777666666666655441 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW----LQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.....+.+...+.+.|+.++|.+++..+.+++-+ |.......+++.-....+...|...++.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2344566666677888888888888887654321 3333344566666666677777666654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.4e-13 Score=138.17 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=163.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... .|+...+..+..++
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 3333333433 5556666666665553 244333333344445788888888888876554 34444555666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.+.|+.++|...++...+.+.. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888876522 2233333344444569999999999998865 567888888888999999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..+++..+.. |.+...++.+...+...|++++|++.+++.++.. |-++..+..+..++...|+.++|...++.
T Consensus 630 ~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 630 SDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999875 3477888999999999999999999999999887 67788899999999999999998876643
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.1e-14 Score=125.25 Aligned_cols=362 Identities=11% Similarity=0.110 Sum_probs=256.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
+.+..+|..+|..+++-...+.|.+++.+........+..+||.+|.+-. +....++..+|....+.||..|+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 34567888888888888888999999998888878889999999887544 22237788888888888999999999
Q ss_pred HHHHHhcCChhH----HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----cCHHHH
Q 011919 171 IRLFCEKGDMIA----ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-ACGLFKVMKR----HGCA----ANLVAY 237 (475)
Q Consensus 171 l~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~----~~~~~~ 237 (475)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ .|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999997765 46677888888999999999999998888888654 3334444332 2222 245567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEG--GDCSPNV---VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
...|..|.+..+.+-|.++-.-+.... ..+.|+. .-|..+....|+....+..+..|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888765554311 1122332 23556777888888899999999999888788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHHHCC
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RL--------K-----EAEKLF-------SKMLASG 371 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~~-------~~m~~~~ 371 (475)
+++....|.++-.-++|.+++..|...+...-.-++..+++.. .. . -|..++ .+|.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 9999999999999999998888776554444444444455443 11 0 011111 223333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
.-.....+.+.-.+.+.|+.++|.+++..+.+.+-.-+ .....| -+++.-.+.+....|...++-|...+.+.-.
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip-~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP-RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 33445667777778999999999999999976653321 223344 5666777889999999999999877754444
Q ss_pred hhHHHHHHHHH
Q 011919 449 PYVDKIVEHLK 459 (475)
Q Consensus 449 ~~~~~l~~~~~ 459 (475)
..-+.+...|.
T Consensus 597 ~La~RI~e~f~ 607 (625)
T KOG4422|consen 597 GLAQRIMEDFA 607 (625)
T ss_pred HHHHHHHHhcC
Confidence 35555555443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1e-12 Score=134.68 Aligned_cols=344 Identities=11% Similarity=0.007 Sum_probs=249.5
Q ss_pred hhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCC---hhHHH
Q 011919 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGD---MIAAD 184 (475)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~---~~~a~ 184 (475)
..++...+..|-+.. +-+......+--...+.|+.++|.++|+..... +-.++....+.++..|.+.+. ..++.
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 333444444444432 224445545555677888999999999987762 122344455577777777665 22332
Q ss_pred HH-------------------------HHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 011919 185 EL-------------------------MKGMGLIDLYP--DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237 (475)
Q Consensus 185 ~~-------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 237 (475)
.+ +....... ++ +...|..+..++.. ++.++|...+.+.... .|+....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 22 22222111 33 56677777777776 8888999988887765 3665554
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 45556667899999999999998663 4555566777888899999999999999998764 223333334444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 396 (475)
..|++++|...+++.++... +...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 66999999999999998664 5778999999999999999999999999976 454 566777777899999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+++..+.. |.+...+..+..++...|++++|...+++.++.. +-+..+.....+...+..+++.+.+-+
T Consensus 664 ~~l~~AL~l~---P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 664 EMLERAHKGL---PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999865 3478899999999999999999999999999887 555566666677777777676665543
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.6e-13 Score=130.06 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHHhcCCHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a 218 (475)
.|+++.|.+.+.+..+.. |+. ..+-....++.+.|+++.|.+.+.+..+.. |+.. .--.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 455555555555444321 222 122222344444555555555555543321 2221 222234444455555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...++.+.+.. +-+..++..+...|.+.|++++|.+.+..+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555543 22344445555555555555555555555554
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.6e-13 Score=126.91 Aligned_cols=283 Identities=13% Similarity=0.041 Sum_probs=174.0
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTII-YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV--SMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 218 (475)
.|+++.|.+.+....+.. +++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577888877777655432 12222 333344446777888888888777653 34443322 235567777888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH------HHHHHHHHHHHhcCCHHHHHH
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV------VTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 292 (475)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888777765 33667777777788888888888888887777432 11111 122233333334444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
+++.+.+. .+.+......+...+...|+.++|.+++++..+... +.. -.++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 66555432 234566667777777777777777777777766432 221 11233333457777777777777765
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 373 KPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 373 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|+ ...+..+.+.|.+.+++++|.+.|+...+.. |+...|..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333 4445566667777777777777777777653 2556666777777777777777777776654
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=3.4e-12 Score=122.64 Aligned_cols=358 Identities=11% Similarity=0.021 Sum_probs=275.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+..+|+.+.|.+++.+..+.. +-....|-.|...|-+.|+.+++...+-..-..+ +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 45566699999999999998875 6788899999999999999999998887665443 457789999999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH----HHHHHHHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS----ALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~ 257 (475)
.|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+. .++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998876 5666666667788999999999999999999874333333332 3456677778889999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC---------------------------APNRVTIS 310 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~ 310 (475)
+.....+ +-..+...+++++..+.+...++.|......+..... .++... .
T Consensus 304 e~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 304 EGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887732 2235566788999999999999999998888776222 222222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
.++-++.+....+....+..........| +...|.-+..+|.+.|++++|+++|..+......-+...|-.+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334445555555555666666666433 5678889999999999999999999999977555567788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHh
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML--------KKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~ 460 (475)
.|..++|.+.++...... |.+..+--.|...+-+.|+.++|.+.+..+. ..+.+|...........+.+
T Consensus 462 l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA---PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HhhHHHHHHHHHHHHhcC---CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999864 3466667778888899999999999998854 23445666677777888888
Q ss_pred cCCHhHH
Q 011919 461 SGDEELI 467 (475)
Q Consensus 461 ~g~~~~a 467 (475)
.|+.++-
T Consensus 539 ~gk~E~f 545 (895)
T KOG2076|consen 539 VGKREEF 545 (895)
T ss_pred hhhHHHH
Confidence 8887763
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=8.3e-13 Score=124.46 Aligned_cols=285 Identities=11% Similarity=0.026 Sum_probs=222.1
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHH--HHHHHHHhcCChhHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN--NVIRLFCEKGDMIAAD 184 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~ 184 (475)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888755543222 222333344558899999999999999874 35554333 3367888999999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 011919 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 567788899999999999999999999999998755322 23334444445556677777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+...
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777553 2457778888999999999999999999998874 445422 233444566999999999999988764
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
. |...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3 6677889999999999999999999999976 799999999999999999999999999987653
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.7e-15 Score=136.41 Aligned_cols=257 Identities=18% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-cc
Confidence 3455555666666666664433322 12233444444445555666666666666665532 1233344445544 45
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.+++++|.++++...+.. ++...+...+..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665544332 344445556666666666666666666655432 22345556666666667777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 363 LFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 363 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.+++..+. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..++...|++++|+.++++..+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77766654 343 4555666666666677776666666666543 12445566666677777777777777777666
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.. +.|+.+...+..++...|+.++|.++.+.
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT--------------
T ss_pred cc-ccccccccccccccccccccccccccccc
Confidence 55 56666666777777777777777666543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=3e-15 Score=134.84 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
..+..+|...|+.++|...|++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccccccc
Confidence 333334444444444444444433
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=3.7e-12 Score=120.76 Aligned_cols=291 Identities=10% Similarity=0.007 Sum_probs=194.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHH-hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH--hhHHHHHHHHHhcCChh
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVK-MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT--IIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~ 181 (475)
...|+++.|.+.+....+.. |+.. .+-....+..+.|+++.|.+.+++..+.. |+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998876653 4433 33344567888999999999999987643 443 33444578888999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-HHHHH---HHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS-ALLDG---ICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~---~~~~g~~~~a~~~~ 257 (475)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++. +...+. .-..+ ....+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998876 556778889999999999999999999999998754 333332 11111 12233333333344
Q ss_pred HHHHhcCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 258 GEMEKEGG-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT--I-STLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~-~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
..+.+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 44443210 012367778888888888999999999988888753 33321 1 111112233466677777777766
Q ss_pred hCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 334 AGGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 334 ~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54322 33 445567777777777777777777433333367777777777777777777777777776543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.4e-11 Score=118.58 Aligned_cols=324 Identities=15% Similarity=0.046 Sum_probs=252.3
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.++ .|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.
T Consensus 149 lfa-rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFA-RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHH-hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 344 499999999999998875 4678899999999999999999998876554433 5677889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-cHH----HHHHHHHHHHhcCCHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP-NVV----TYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~----~~~~li~~~~~~g~~~~a~~ 292 (475)
|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++.+.. +| |.. .-..+++.+...++.+.|.+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999875 4466666667788999999999999999999852 22 221 22334666777888899999
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhH
Q 011919 293 ILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------------------------SVSSGGCY 344 (475)
Q Consensus 293 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 344 (475)
.++..... +-..+...++.++..+.+...++.|......+.... ..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99887652 334456678899999999999999998887776621 11222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
.+.-++...+..+...-+.....+..+.| +...|.-+..+|...|++.+|..++..+....... +...|-.+..+
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c 458 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARC 458 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHH
Confidence 23334445555555555555555555333 45678889999999999999999999999875432 67789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|...|.+++|++.+++.+... |.+...--.+...+.+.|+.|+|.+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999887 7777788889999999999999988764
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=7.4e-12 Score=106.67 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=201.2
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh------hHHHHHHHHHhcCCh
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI------IYNNVIRLFCEKGDM 180 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~ 180 (475)
.+++++|.++|-+|.+.. +-+.++.-+|.+.|.+.|..++|+.+.+.+.+. ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 477888999988888843 555666667888999999999999999988773 4422 344566678888999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+.|.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999888755 44566777888899999999999999888888764433 23456666666677888888888
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+.+..+.+ +..+.+--.+.+.+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888753 233334445566778888888888888888887655556677778888888888888888888887754
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 011919 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 405 (475)
..++. -..+-+......-.+.|...+.+-+.. +|+...+..+|..-.. -|...+....++.|...
T Consensus 280 ~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 43332 333333333444455565555555544 6888888877775432 23455555566666554
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.3e-11 Score=106.82 Aligned_cols=281 Identities=12% Similarity=0.063 Sum_probs=133.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
.|++..|+++..+-.+.+ +-....|..-..+--..||.+.+-.++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555444433 1222233333444444555555555555554442233444444444555555555555555
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~ 329 (475)
++++.+.+ +...........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55554432 334444555555555555555555555555555443332 23444444444444444433344
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
+..... ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++...-.+..++-.+..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h--- 324 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH--- 324 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC---
Confidence 433221 112233344455555555666666666555555544333 1111 12344455555444444444332
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.+...+.+|...|.+.+.|.+|.+.|+..++.+ |+..++..+..++.+.|+.+.|.++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHH
Confidence 1233555555555666666666666665444443 55556666666666666655555443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2e-11 Score=108.63 Aligned_cols=379 Identities=13% Similarity=0.040 Sum_probs=219.4
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh----HHHHHHHHHHcCCHHHHH
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM----MKVIFNLCEKARLANEAM 149 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~ 149 (475)
...|+..+....+...|+....+--.+-.++.+.+.+..|++.++.....-...+-.+ .+.+--.+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 3455555555555555544433333334455666778888888877665432233333 333333677889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------------hhHHHHH-----------
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------------ITYVSMI----------- 206 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~~~li----------- 206 (475)
.-|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|......||. ...+..|
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999887764 467665444555556678888888888887653222221 1111111
Q ss_pred ----------------------------------------------------HHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011919 207 ----------------------------------------------------KGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 207 ----------------------------------------------------~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
.-+.+.|+++.|.++++-+.+..-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 1133556666666666555443211111
Q ss_pred HHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 235 VAYSALL------------------------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 235 ~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..-+.|- +.....|++++|.+.|++...... .-+...-.+.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfnig 531 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIG 531 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhc
Confidence 1111000 001123556666666666655211 1111111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
-.+-..|+.++|++.|-.+... +..+......+.+.|....+...|++++.+.... ++.|+.....|...|-+.|+-.
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence 2344556666666666555432 1224455555666666666666777666554332 2335667777778888888877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 437 (475)
.|.+.+-+--.. ++-+..+...|..-|....-.++++.+|++..-. .| +..-|..++..|. +.|+++.|+++++
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 777765443322 3445677777777777777788888888876553 33 7788888876655 5799999999988
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+...+ +|-+...+..+++.+...|-.+
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchh
Confidence 87654 4788888888888887777543
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.1e-11 Score=103.96 Aligned_cols=301 Identities=14% Similarity=0.087 Sum_probs=214.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------hHHHH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------TYVSM 205 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l 205 (475)
|-.=++.+. .++.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|..++|+.+.+.+.+ .||.. ....|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHH
Confidence 333344444 455789999999998743 33555667788889999999999999998876 34432 34456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHHHHHH
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSVIQIF 281 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~~ 281 (475)
..-|...|-+|.|+.+|..+.+.| ..-......|+..|-+..+|++|+++-+++.+.+. .+. ...|.-+...+
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHHH
Confidence 777888999999999999988865 23456778889999999999999999998887431 111 12244455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
....++++|..++.+..+.+.+ .+..--.+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6678899999999888876422 233334556778889999999999999999887666778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHH
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARF 438 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~ 438 (475)
.++..+.+....+ ..-..+..-.....-.+.|..++.+-.... |+...+..++..-.. .|...+-+-++++
T Consensus 270 ~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~----Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 270 NFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRK----PTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhC----CcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 9999888763333 333444443344455566666665555542 377778888777653 4567778888888
Q ss_pred HHHcCCCCC
Q 011919 439 MLKKRIWLQ 447 (475)
Q Consensus 439 m~~~~~~~~ 447 (475)
|+...+..+
T Consensus 344 mvge~l~~~ 352 (389)
T COG2956 344 MVGEQLRRK 352 (389)
T ss_pred HHHHHHhhc
Confidence 887655433
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2e-10 Score=101.09 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=169.5
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.|++.+|.+++..-.+.+- -....|..-..+.-+.|+.+.|-..+.+.-+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777666552 233444445556666777777777777766642234555566666667777777777777
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++++.+.+ +-+........++|.+.|++.....++..|.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776655 455666677777777777777777777777777654333 3455555555555555555555555
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011919 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+. .. .-.+.+-++.+.-.+..+...+....
T Consensus 255 ~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 255 QPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred ccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 5442 1233444445555666666666666666666665554441 11 12234445555555555554433221
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..+..|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2345666666666666666666666655544 56666666666666666666666666665553
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.9e-10 Score=111.73 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..++|+++|.+.++.. +-|...-+-+...++..|++..|..+|....+... ....+|-.+..+|...|+|..|++
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHH
Confidence 34567888888877653 33555666666777888999999999999988753 245678889999999999999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 435 LARFMLKKR-IWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 435 ~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.|+...++- ...++.+...|.+++.+.|.+.++.+.+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 998887653 3567778889999999999988877654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.3e-12 Score=116.76 Aligned_cols=286 Identities=13% Similarity=0.062 Sum_probs=218.5
Q ss_pred CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
+.++|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999995553 34455777888999999999999999999987643 11356677776654422 222333
Q ss_pred H-HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 222 F-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 222 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3 2333332 4478899999999999999999999999999853 337889999998999999999999999887653
Q ss_pred CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 301 GCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 301 ~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
|...|+ -+.-.|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.|+|+++++++.....+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 455554 4556789999999999999999886644 5566677778888999999999999999876432 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
.--.-...+...++.++|+..++++++.- | .+..+|..+...|-+.|+.+.|+.-|--|.+...+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v--P-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV--P-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 33334455677899999999999999953 3 4788899999999999999999999988887764433
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-09 Score=96.16 Aligned_cols=312 Identities=12% Similarity=0.069 Sum_probs=217.7
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCC
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~ 214 (475)
.++....+.+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+.+.- -|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 356666677888888888888887666666666666666778899999999998876411 255666665543222111
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+..+.+-.-.--+--+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1122111111001234577788888888889999999999988854 455677888888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
+...+-+ +.|-..|-.|-++|.-.+...-|+-.|++.....+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 8888764 457778888889999888888899889888775433 77889999999999999999999999888765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 450 (475)
+...+..|...+-+.++.++|.+.++...+. |...+....+---|..-+.+.+++++|..+....... .+...-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6678888888888889999998888877663 3222112222223555566788888888776655544 344444
Q ss_pred HHHHHHHHHh
Q 011919 451 VDKIVEHLKK 460 (475)
Q Consensus 451 ~~~l~~~~~~ 460 (475)
-+.+++.+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4555554444
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.6e-10 Score=101.15 Aligned_cols=326 Identities=11% Similarity=0.029 Sum_probs=217.2
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-- 203 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 203 (475)
..|...+-.....+.+.|....|.+.|...... -+..|...+....-..+.+.+..+.. +.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 444444444444677788888888888776642 22334444433322333333332222 1122211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
-+..++-.....+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+...=--.|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 2345566666788888888888888877676666667777778889999999999998853111135666766553 33
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
..+.. +.++.+-...--+.-+.|..++.+.|.-.++.++|...|+..++.+.. ....|+.+..-|....+...|.+-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 32221 222221111111233467778888888888888888888888887654 355688888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|+..++-+ +-|-..|-.|-++|.-.+...-|+-+|++..... | .|...|.+|..+|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888653 4467788888888888888888888888888753 3 478888888888888888888888888888877
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 444 IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...+..+.+.+.+.++.++|...
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 55777888888888888888877543
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=4.1e-09 Score=98.36 Aligned_cols=356 Identities=14% Similarity=0.011 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
+..-...+.+.+.++-+..++....+.- +-+...|.-....-...|..++-..+|++....- +-....|-.....+-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh
Confidence 3334445555555555555555554432 3344455444444445555566666666655432 2334444444455555
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
.|++..|..++.+..+.. +.+...|-..+..-.....++.|..+|.+.... .|+..+|..-+..---.+..++|.++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 566666666666655543 335556666666666666666666666665543 34555555545544555666666666
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+++..+.- +.-...|-.+.+.+-+.++.+.|.+.|..-.+. ++-.+..|..|...--+.|.+-+|..+++...-++
T Consensus 674 lEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 674 LEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 66666531 222334555555666666666666655544332 23334445555555555566666666666665555
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011919 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
+. +...|-..|+.-.+.|..+.|..+..+.++. ++-+...|..-|...-+.++-.... +.+++-. .|..+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~---DALkkce----~dphVl 820 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI---DALKKCE----HDPHVL 820 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH---HHHHhcc----CCchhH
Confidence 43 4555666666666666666666666555543 1222333444343333333322221 1122211 144556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
-.+...+....+++.|.+.|.+..+.+ +..-.+|.-+...+.+.|..+.-.+++
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666667777777777777777766 555566777777777777655544444
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.6e-10 Score=110.79 Aligned_cols=319 Identities=15% Similarity=0.026 Sum_probs=205.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcc----cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC---CCCCC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMP----EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI---DLYPD 198 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 198 (475)
+.|...|-.+..++-....+ .++..|.... ..+-.+.++..|.+.......|+++.|...|.+.... ...+|
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 34445554444444433322 2244444332 2233355566666666666666666666666655433 11122
Q ss_pred h------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 199 I------ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 199 ~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
. .+--.+....-..++++.|.+.|..+.+.. |+ +..|-.+....-..+...+|...+....... ..+.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d---~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID---SSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc---cCCc
Confidence 2 112223344445556666666666666542 22 2233333333333456777777777776642 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCC
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVE------------GNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~ 338 (475)
..++.+...+.+...+..|.+-|+...+. ...+|......|-+.|... +..++|+++|.++++.++.
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56666666777777777777766655433 2234665555555544422 4578899999999987754
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
|..+-|.+.-+++..|++.+|..+|.+..+... -...+|-.+...|...|++..|+++|+...+... +..+..+...
T Consensus 645 -N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~ 721 (1018)
T KOG2002|consen 645 -NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHY 721 (1018)
T ss_pred -hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHH
Confidence 677788899999999999999999999988643 2445788899999999999999999999887755 3458899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
|.+++.+.|++.+|.+.+...+...+......||.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 99999999999999999988888764333334443
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=7.9e-12 Score=119.72 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.|++.+|..++.+-...|+.+.|..++.+|.+.|+..+..-|..|+-+ .+....+..+.+-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 466677777777777777777777777777777766666655555544 56666666666777777777777777666
Q ss_pred HHHHHhcCC
Q 011919 383 IRELCLGGQ 391 (475)
Q Consensus 383 i~~~~~~g~ 391 (475)
+..+..+|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666555444
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=8.6e-12 Score=116.32 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=214.6
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+..+|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.= ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 567899999985543 23445667788899999999999999999998753 1236678887775544321 2222
Q ss_pred H-HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 257 L-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
+ +.+.... +-.+.+|-++..+|.-.++++.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 2333321 456789999999999999999999999999875 44 678888888888888999999999999877
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011919 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+.. +-.+|..+...|.+.++++.|+-.|++..+- .| +.+....+...+.+.|+.++|++++++......+ |+
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~ 557 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NP 557 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---Cc
Confidence 5543 3455667788899999999999999999865 44 4566677777889999999999999999987643 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..--..+..+...+++++|+..++++...- |.+..++..+...|.+.|+.+.|..-.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 444455667778999999999999998775 778888999999999999999886543
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=9.6e-09 Score=95.97 Aligned_cols=341 Identities=9% Similarity=0.046 Sum_probs=237.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--
Q 011919 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEA----YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-- 162 (475)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-- 162 (475)
..+.+...+-...+.-.++|+.+.+..+++. +...|+..+...|-.=...|-..|..-.+..+....+..|+.-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3445566666666666667777766666544 4456777777777766667777777777777777766655432
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
-..+|+.-...|.+.+.++-|..+|....+.- +.+...|......--..|..++...+|++.... ++-....|-....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 23467777777777777777777777766543 445666666666666677788888888877765 2335556666667
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
-+-..|+...|..++..+.+.. +-+...|-..+........+++|..+|.+.... .|+...|..-+..-.-.++.
T Consensus 593 e~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7777888888888888887743 346677777788888888888888888877663 56777777766666777888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
++|.+++++.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. .|+ ...|-.|...=-+.|++..|+.+++.
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8888888887775322 2355777777788888888888887765543 344 34455555544566788888888888
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..-++ +.+...|-..|+.-.+.|+.+.|..+..++++.
T Consensus 745 arlkN---Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 745 ARLKN---PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhcC---CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77765 346778888888888888888888777666654
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1e-11 Score=105.91 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
|.+--+.+.++|.+.|.+.+|.+.++...++ .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.|+....-.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 4444466777888888888888888777664 366677777778888888888888888777664 23333333455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
.+.+...++.++|.++++...+.... ++....++...|.-.++++-|+.+|+++++.|+. +...|+.+--+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 66677777888888888887775532 5566666777777778888888888888877764 566677776677777888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.++.-|.+....-..|..-..+|..+.......|++..|.+.|+-.+..+ +.+...++.+.-.-.+.|+.+.|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 888877777776654444456677777777777888888888888777776 5666777777777778888888877765
Q ss_pred cC
Q 011919 473 IG 474 (475)
Q Consensus 473 ~a 474 (475)
.|
T Consensus 454 ~A 455 (478)
T KOG1129|consen 454 AA 455 (478)
T ss_pred Hh
Confidence 43
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.1e-08 Score=92.16 Aligned_cols=387 Identities=11% Similarity=0.036 Sum_probs=240.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
+.+.++|..+|..+.... ..+..++-..++.-.+.++.+.|..+++.....-...|.. |-..+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 445566666666654332 2344455555666666677777777777765543222222 2223333344567777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-G 229 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 229 (475)
+|++-.+- .|+...|++.|..=.+-+.++.|..+++...-. .|+..+|--..+.=.+.|+...|.++|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 77766553 577777777777777777777777777776542 477777777766666777777777777665542 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------------------------------------CCC
Q 011919 230 C-AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----------------------------------------GDC 267 (475)
Q Consensus 230 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------------------------------------~~~ 267 (475)
- ..+...+.+....=.++..++.|.-+|.-....- ..-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 0111222222222222333333333333222210 011
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGF---CVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+.|-.+|--.+..--..|+.+...++|++.... ++|-. ..|-.+=-++ ....+.+.+.++|+..++ +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 345556666666667778888888888887765 34421 1121111111 245678888888888777 3
Q ss_pred CC-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 338 VS-SGGCYSSL----VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 338 ~~-~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
.| ...||..+ ...-.++.++..|.+++...+ |..|...+|...|..=.+.++++.++.++++..+.+ |.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHh
Confidence 33 33344433 333446678888888888877 778888888888888888899999999999999876 347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+|......-...|+.+.|..+|.-+++... ......|...++.-...|.++.|..+.+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 78888887777788999999999988887653 2334456777777788888888876653
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.7e-11 Score=117.44 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=165.0
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011919 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 194 (475)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45555666677777777777777777777766665 6666666555566666677666666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
.|...||..|..+|...||+.. |+...+ -.-.+...+...|.-.....++..+.-. .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHH--
Confidence 4666677777777777776554 222221 1222333444555555555555443322 12233432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+....-.|-++.+++++..+..... .|..+ +++-+.... ....++.+......-.|+..+|..++.+-..
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 233444556667777777766543211 11111 233333322 2223333333222125777888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011919 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
.|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.| +..|+...+..+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchh
Confidence 88888888888888888888777777777654 777778888888888888876 77888877777776554
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=3.1e-10 Score=99.37 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444455555555444443322 2233444444444445555555555555444432 123334444444555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
..|++++|.+.+++..... ..+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555544321 011122334444445555555555555555544432 11233444455555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554431 2233334444455555555555555555443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.6e-10 Score=98.30 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=117.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4455556666666666666666666665543 2245556666666666666666666666666532 23445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
..+...|++++|.+.+++....... .....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 6666666666666666666543211 12334455555666666666666666666654322 344555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++|.+.+++..+. ...+...+..+...+...|+.++|..+++.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666554 123344445555555666666666666665544
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.1e-09 Score=108.11 Aligned_cols=251 Identities=13% Similarity=0.001 Sum_probs=139.9
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+.++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3456777777666543 223344444443332 2234667777777777654 2256666666667777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 329 (475)
+++|...|+++.+.+ |.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 777777777777643 334556666677777777777777777777665322 1222223333455567777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
++..+....-+...+..+..++...|+.++|...+.++... .|+... .+.+...|...| +.|...++.+.+..-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77665432223344555666677777777777777766543 333332 333334445555 3666656655543211
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
-+.+. .+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 506 ~~~~~-~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNP-GL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCc-hH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11111 11 33334445666655555 6665554
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=8.8e-10 Score=108.70 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=190.3
Q ss_pred ccCHHhHHHHHHHHHH-----cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHhc
Q 011919 126 VVSVKMMKVIFNLCEK-----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE---------KGDMIAADELMKGMG 191 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 191 (475)
+.+...|...+.+-.. .+.+++|...|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3456666666664321 234679999999998764 2245566666555442 245789999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+.+ +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |.+.
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCh
Confidence 765 5577888888888999999999999999999875 3357788889999999999999999999999853 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...++++...... +....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 3334445567778999999999999876532224555677788888999999999999987655322 344456666677
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 352 VRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...| ++|...++.+.+. ...+....+..+ .+.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4788777777652 223332333333 34556777766655 7777754
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.9e-12 Score=81.27 Aligned_cols=50 Identities=38% Similarity=0.759 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.6e-12 Score=80.85 Aligned_cols=49 Identities=43% Similarity=0.983 Sum_probs=28.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.1e-09 Score=96.07 Aligned_cols=279 Identities=17% Similarity=0.115 Sum_probs=203.5
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH-Hh-cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF-CE-KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
-+.++|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|..+-+.....+ +-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4677899999999988877643332222233332222 22 346777777777665432 22333333333344467999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.+.|++.....-.-....|| +.-.+-..|++++|++.|-++..- +.-++.+.-.+...|-...+...|++++.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999998763222222233 334577889999999999877542 23567777888899999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+.... ++.|+.....|...|-+.|+-..|.+.+-+--+ .++.+..+..-|...|....-+++++..|++.. -++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 76654 566788899999999999999999887655433 244477888888899999999999999999876 45899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011919 376 GLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 376 ~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
..-|..++..| .+.|++.+|..+++.+.++- +.|..+...|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHHhccccc
Confidence 99999988766 56899999999999999874 3488888889888887774
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=2.4e-09 Score=100.94 Aligned_cols=245 Identities=20% Similarity=0.177 Sum_probs=178.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----
Q 011919 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-----GC-AANLVA-YSALLDGICRLGSMERALELLGEMEKE----- 263 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 263 (475)
+.-..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333456667889999999999999999887654 21 223332 344777888999999999999988652
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011919 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----GC-APNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAG- 335 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 335 (475)
|...+.-..+++.|..+|++.|++++|...++...+- |. .|.. ..++.+...++..+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2222233456778888999999999988887765421 11 1222 23566777888999999999998876542
Q ss_pred --CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 336 --GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----G-VKP-DGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 336 --~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
-+.+ -..+++.|...|...|++++|.+++++.+.. | ..+ ....++.|..+|.+.++.++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1111 2467999999999999999999999988742 1 112 2456788888999999999999998876
Q ss_pred HH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 403 EK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 403 ~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
.. .|...+....+|..|...|-+.|++++|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 54 344333345789999999999999999999988776
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.7e-08 Score=91.30 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=147.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011919 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|+.-.|..-|+..++....+ ...|--+..+|....+.++..+.|......+ +-+..+|..-.+.+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHH
Confidence 455556666666665543222 2225556667777777788888887777643 345566666666677777788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
.=|++..... +-+...|..+..+..+.+++++++..|++.+++-+ ..+..|+.....+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8887777643 22455666666666777888888888888877543 34667888888888888888888888887754
Q ss_pred CCCC-------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 372 VKPD-------GLA--CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 372 ~~p~-------~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|+ ... -..++.. --.+++..|.+++++..+... .....|..|...-.+.|+.++|+++|++....
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp---kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP---KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 111 1122211 123788888888888888642 24567888888888888888888888877654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=5.7e-10 Score=95.47 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=179.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHH
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY-TSVIQIF 281 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~ 281 (475)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-+.|.+..+...|+.++.+-.+. .|..+|| .-+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 56778888889999998888887776 566778888888899999999999888887764 3444444 4566777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
-..++.++|.++++...+.. +.++.....+...|...++.+-|+..++.+++.|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88888899999998887653 335566666677788888999999999999988876 5677888888888888999888
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 362 KLFSKMLASGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
--|.+....--.|+. ..|-.+-......|++..|.+.|+-....+ +.+...++.|...-.+.|++++|..++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 888887764434443 455556666677899999999998888765 336788999888888999999999999888
Q ss_pred HHcC
Q 011919 440 LKKR 443 (475)
Q Consensus 440 ~~~~ 443 (475)
.+..
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 7654
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.8e-07 Score=84.48 Aligned_cols=363 Identities=10% Similarity=0.013 Sum_probs=246.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhc
Q 011919 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEK 177 (475)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~ 177 (475)
.....-...++...|..+++...... .-+...|-.-+.+=.++..++.|..+|++.+.. -|-+ ..|--.+.+=-..
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 33344455677888999999988765 567777877888888999999999999998874 2332 3444455555567
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|.++|+...+. .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|-.....=.++|....|..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998754 799999999999999999999999999998875 589999999999999999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------------------------------ 301 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------------------ 301 (475)
....+.-.+-..+...+.+....-.+...++.|.-+|+-..+.=
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 98876311001112223333222223334444444444333220
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHH--------HHHHhcCCHHHHHHHHH
Q 011919 302 -------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLV--------VELVRTKRLKEAEKLFS 365 (475)
Q Consensus 302 -------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~a~~~~~ 365 (475)
-+-|-.+|--.++.-...|+.+...++|+..+..-.+... ..|...| -.-....+++.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1223344455555556667777777777777664322111 1111111 11123567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 366 KMLASGVKPDGLACSVMIREL----CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
..++. ++....||..+--.| .++.++..|++++...... .| ...+|...|..-.+.++++...+++++.+.
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cP--K~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CP--KDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CC--chhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77762 333345555443333 3556777788777776654 33 557788888888888888888888888888
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
.+ |-+-.+|......-...|+.+.|..+..+|
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88 677778888888888888888887776543
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=3.1e-08 Score=94.71 Aligned_cols=260 Identities=15% Similarity=0.093 Sum_probs=125.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK---- 177 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 177 (475)
.++...|+++.|++.++.-... +......+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3455567777777776553322 22223334444556667777777777777776654 12333333344433211
Q ss_pred -CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 178 -GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE-DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+.+...++++++...- |.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 23455566666664432 33333333322222222222 3444555556666442 44445445554444444444
Q ss_pred HHHHHHhcC----C--------CCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011919 256 LLGEMEKEG----G--------DCSPNVVTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEG 320 (475)
Q Consensus 256 ~~~~~~~~~----~--------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 320 (475)
++......- . .-+|+...| ..+...|...|++++|++++++..+. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 444443210 0 012333222 33344555555555555555555554 233 444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
++.+|.+.++.....+.. |...-+..+..+.++|++++|.+++....+.+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555555554433 44444444555555555555555555555443
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.1e-08 Score=95.81 Aligned_cols=283 Identities=17% Similarity=0.122 Sum_probs=158.5
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhc----
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRL---- 247 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~---- 247 (475)
.+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+++.+ |+-. -|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 34556666666666655432 222223334455566666666666666666666653 3333 333333333111
Q ss_pred -CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 248 -GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 248 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
.+.+...++++++.... |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 24556666666665531 3332222222222221122 23444555566666543 455555555555555555
Q ss_pred HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011919 326 YQLIDKVVAG----G----------SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCL 388 (475)
Q Consensus 326 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 388 (475)
.+++...... + -.|+. .++.-+...|...|++++|++++++.++. .|+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555554322 1 12222 34455667777788888888888877765 455 4566666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHHh
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--------DKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~ 460 (475)
.|++++|.+.++..+.... .|...=+..+..+.++|+.++|.+++......+..|..... .....+|.+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877653 25555566666777888888888887777666643332211 355667777
Q ss_pred cCCHhHHhhc
Q 011919 461 SGDEELITNL 470 (475)
Q Consensus 461 ~g~~~~a~~l 470 (475)
.|++..|.+.
T Consensus 318 ~~~~~~ALk~ 327 (517)
T PF12569_consen 318 QGDYGLALKR 327 (517)
T ss_pred HhhHHHHHHH
Confidence 7777777553
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=2.4e-07 Score=86.86 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
-.++..+-+.|+++.|..+++...++- |+ -+..|..-.+.+...|.+++|..++++..+.. .+|...-........
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345566667777777777777777652 21 34455555566777777777777777777665 455554446666666
Q ss_pred hcCCHhHHhhcc
Q 011919 460 KSGDEELITNLP 471 (475)
Q Consensus 460 ~~g~~~~a~~l~ 471 (475)
+..+.++|.+++
T Consensus 451 rAn~i~eA~~~~ 462 (700)
T KOG1156|consen 451 RANEIEEAEEVL 462 (700)
T ss_pred HccccHHHHHHH
Confidence 667777766654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=1.2e-08 Score=96.25 Aligned_cols=243 Identities=16% Similarity=0.096 Sum_probs=177.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKE---GGD-CSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEAL---- 300 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~---- 300 (475)
.+--..+...+...|...|+++.|..+++...+. ..| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334456677999999999999999999988763 111 1244333 344777889999999999999998642
Q ss_pred -C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 301 -G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-----GSV-SS-GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 301 -~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
| ..| -..+++.|..+|.+.|++++|...++...+- +.. |. ...++.+...++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 112 2346777788899999999998888776531 111 11 234677788899999999999999877642
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 371 ---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 371 ---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
-..++ ..+++.|...|...|++++|.++++++.... .. .......++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 3678899999999999999999999887641 11 111245678889999999999999999887
Q ss_pred HHHc----CC--CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 439 MLKK----RI--WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 439 m~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
...- |. +....+|..|...|...|+++.|.++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6642 32 2333578899999999999999998763
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=7.7e-08 Score=87.14 Aligned_cols=360 Identities=13% Similarity=0.007 Sum_probs=239.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcC
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKG 178 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 178 (475)
...+-+.++++.|++.+...... .|+ +..|.....+|...|+|+++.+.-.+..+. .|+ +..+..-.+++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34566788999999999998775 566 677777888899999999999888888774 344 345666677888889
Q ss_pred ChhHHHHHHH------Hh-------------------------ccCC--CCCChhhHHHHHHHHHh---------c--CC
Q 011919 179 DMIAADELMK------GM-------------------------GLID--LYPDIITYVSMIKGFCN---------A--GR 214 (475)
Q Consensus 179 ~~~~a~~~~~------~~-------------------------~~~~--~~~~~~~~~~li~~~~~---------~--~~ 214 (475)
++++|+.=+. .. .+.+ +-|+....++....+.. . ++
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 9888765321 11 1011 12333333333322211 0 00
Q ss_pred --HHHHHHHHHHHHHCCC----------------Cc-----C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011919 215 --LEDACGLFKVMKRHGC----------------AA-----N------LVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 215 --~~~a~~~~~~m~~~g~----------------~~-----~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
..++.+.+..-...|. .+ | ..+...-...+.-.|+.-.|..-|+......
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~- 356 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD- 356 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-
Confidence 1122221111111110 01 1 1111111122344688888999999888742
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011919 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+.+...|--+...|....+.++..+.|++..+.+ +-|+.+|..-.+.+.-.+++++|..=|++.+..+.. +...|-
T Consensus 357 --~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~i 432 (606)
T KOG0547|consen 357 --PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYI 432 (606)
T ss_pred --cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHH
Confidence 2223337677778999999999999999988765 335667777777777888999999999999886543 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCCchhhHHHHH
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL-----SSVDSDIHSVLL 420 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~li 420 (475)
.+.-+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...+.... ..+...+.-.++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 6666667889999999999999876 3334678898999999999999999999998875321 001111222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..- -.+++..|.+++++.++.. |-....+..+.+...+.|+.++|.++..
T Consensus 512 ~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 512 VLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 222 3489999999999999887 5556678899999999999999987653
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=1.3e-06 Score=82.02 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C-
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCA----------P- 304 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p- 304 (475)
|..+.+.|-..|+++.|..+|++..+-..+...+ ..+|......-.++.+++.|+++++......-. |
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 4556667777788888888888777632110001 234555555555667777777776665422101 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 011919 305 ------NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-L 377 (475)
Q Consensus 305 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~ 377 (475)
+...|...++.--..|-++....+++.+++..+..... .-.....+..+.-++++.++|++-+..=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 11223344444445566666666676666654432111 111111223334445555555543332122332 2
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCL---GGQVLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~---~g~~~~a~~~~~~~~~ 404 (475)
.|+..+.-+.+ ...++.|+.+|++..+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 33333332221 2245666666666665
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.4e-07 Score=78.61 Aligned_cols=321 Identities=12% Similarity=0.035 Sum_probs=224.1
Q ss_pred hcCCccCHHhHHHHHHHHHHc--CCHHHHHHHHHhccc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 011919 122 EEGCVVSVKMMKVIFNLCEKA--RLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 122 ~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 198 (475)
....+|...+...-+.+++.. ++-..|.+.+-.+.. .-++-|+.....+...+...|+.++|...|++....+ +-+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~ 265 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDN 265 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhh
Confidence 334455555555555554443 333344444333322 2345677888999999999999999999999987543 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
........-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+-++..+.. +.+...|-.-.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG 341 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKG 341 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhcc
Confidence 3334444455667888888888888776542 1244445555556667789999999999988753 34556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-hcCC
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV-VELV-RTKR 356 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~ 356 (475)
..+...+++++|.-.|+...... +-+...|.-|+..|...|++.+|.-+-+...+.- ..+..+...+. ..+. .-.-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchh
Confidence 77889999999999999887642 3467899999999999999999987776655431 11333333331 2222 2223
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-++|.+++++..+. .|+- ...+.+...|...|..+.+..+++...... +|....+.|.+.+...+.+++|++.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccHHHHHHHHHHHHhhhHHHHHHH
Confidence 47899999887754 6763 456666777888999999999999988753 3888999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 011919 436 ARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|...+..+ |.+..+..-+-.
T Consensus 494 y~~ALr~d-P~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 494 YYKALRQD-PKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhcC-ccchHHHHHHHH
Confidence 99999887 566666555433
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.5e-08 Score=89.17 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=185.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
..+......-.+.+-...++....++.+...+.. ++....+..=|..+...|+..+-..+=.++.+.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3445555555566666777777777777776654 6666666666667777777666666656666542 4456677777
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g 248 (475)
..-|.-.|+..+|.+.|.+....+ +.=...|-.+...|+-.|..|.|...+....+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777788888888887765432 223456777777777778888877777665542 211 11122 333466777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----G--CAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~ 322 (475)
.++.|.++|.+.... .|.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|-.+|.+.+.+
T Consensus 395 n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 788888888777763 2556677777766666777788888877765521 0 011234567777777888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
++|+..++..+..... +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 8888888877765543 56777777777777888888888887776 457776666666553
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.8e-08 Score=88.65 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=217.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++.- +-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445556777889999999999988765 6777778888889999999888888888888763 446788999998
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 320 (475)
-|.-.|+.++|.+.|.+....+. .=...|-.+...|.-.|..|+|+..+...-+. |.. -+..| +---|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 89999999999999999877432 23457888999999999999999988776543 221 11222 233577889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GV---K-PDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~-p~~~~~~~li~~~~~~g~~~~ 394 (475)
+++.|.+.|.+.....+. |+...+-+.......+.+.+|..+|+..+.. .+ . --..+++.|-.+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999988765432 5667777777777889999999999887621 11 1 134568888899999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
|+..++...... +.+..+|..+...|...|+++.|++.|.+.+... |+-.+...++..+
T Consensus 474 AI~~~q~aL~l~---~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLS---PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcC---CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHHHHHHHHH
Confidence 999999999875 3488999999999999999999999999998665 5555555444433
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=3.7e-07 Score=85.60 Aligned_cols=265 Identities=12% Similarity=-0.005 Sum_probs=127.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVS---MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
.+...|++++|.+.+++..... +.|...+.. +.......+..+.+.+.++.. ....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 3445566666666666655432 223323331 111111223333444443331 11111122333445556666677
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNR--VTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~ 326 (475)
+++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 130 ~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 130 YDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 777777776666642 33445556666666667777777776666554321 1221 23445566666777777777
Q ss_pred HHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 327 QLIDKVVAGGS-VSSGGCY-S--SLVVELVRTKRLKEAEKL--F-SKMLASGV-KPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 327 ~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
.++++...... .+..... + .++.-+...|..+.+.+. . ..-..... ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 77777643322 1111111 1 222222233322222221 1 11111100 11111122455566778888888888
Q ss_pred HHHHHHcCCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 399 YEDIEKIGFL------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 399 ~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.+...... ........-....++...|++++|.+.+.+.+..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887763221 0001222233334455789999999998888765
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.3e-06 Score=79.71 Aligned_cols=381 Identities=10% Similarity=0.009 Sum_probs=208.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH--HH--HHHHcCCH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI--FN--LCEKARLA 145 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~--~~~~~~~~ 145 (475)
..++.+.|.+...-... .++.+...+.+-+-.+...++++.|+.+++.- + -..+++.. =. +..+.+..
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHHcccH
Confidence 56677777776655532 33556666766666777778888888666542 1 11222222 22 33467888
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC---------------------------C
Q 011919 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---------------------------D 198 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~ 198 (475)
++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+.+. .
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 999998883332 344466666778889999999999999996654211 0
Q ss_pred hhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCC-------CCcCHHHH--HHHH-----HHHHhcCChHHHHHHHHHHH
Q 011919 199 IITYVSMIK---GFCNAGRLEDACGLFKVMKRHG-------CAANLVAY--SALL-----DGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g-------~~~~~~~~--~~ll-----~~~~~~g~~~~a~~~~~~~~ 261 (475)
..+|..+.+ .++..|++.+|+++++...+.+ -.-+...- -..| ..+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 113333322 2344566777777666652211 00011111 1111 23445677777777766666
Q ss_pred hcCCCCCCcHHH----HHHHHHHHHhcCCHH-HHHHHHHHH---------------------------------------
Q 011919 262 KEGGDCSPNVVT----YTSVIQIFCGKGMMK-EALGILDRM--------------------------------------- 297 (475)
Q Consensus 262 ~~~~~~~~~~~~----~~~li~~~~~~g~~~-~a~~~~~~m--------------------------------------- 297 (475)
+.. ++|... -|.++..-....-.+ .++..++..
T Consensus 252 ~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred Hhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 643 233211 111111100000000 000000000
Q ss_pred --HHc-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-------
Q 011919 298 --EAL-GCAPNRVTISTLIKGFCV--EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS------- 365 (475)
Q Consensus 298 --~~~-~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------- 365 (475)
... +..| ...+.+++..+.+ ......+.+++...-+....-.....-.++......|+++.|.+++.
T Consensus 329 ~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 000 0111 1122233322221 12344555555555444333233455566777788899999999998
Q ss_pred -HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 366 -KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 366 -~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
...+.+..| .+...+...+.+.++-+.|..++++....-....+... ++..+...-.+.|+-++|..+++++.
T Consensus 408 ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 555444444 45556666677778777788888777653111111222 33333444457899999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 441 KKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
+.. ++|..+...++.+|++.. .+.|+.+
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 987 799999999999988764 4555443
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=2.1e-07 Score=84.22 Aligned_cols=198 Identities=11% Similarity=-0.057 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345555555666666666666666666532 3345566666666666666666666666665532 113445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
++...|++++|.+.|+...+.+... . ........+...++.++|.+.+.+..... .|+...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~-~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND-P-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 6666666666666666666544321 1 11111112234456677777765544221 2222111 11 1223444433
Q ss_pred HHHHHHHHHHcCCC----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 395 GFCLYEDIEKIGFL----SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +.+..+.+..-. .+.....|..+...+.+.|++++|+..|++.++.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 233333321100 01134567777778888888888888888887776
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.1e-07 Score=85.88 Aligned_cols=195 Identities=17% Similarity=0.039 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...|++..+... -+..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345555556666666666666666665543 34456666666666666666666666666665431 1345556666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
...|++++|.+.|+...+.. |+..........+...++.++|...|++..... .|+... ..+ .....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~--~~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNI--VEFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHH--HHHHccCCCH
Confidence 66667777766666666532 222111122222334556666666665443221 222111 111 1222344333
Q ss_pred HHHHHHHHHhC---CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 325 AYQLIDKVVAG---GSV--S-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 325 a~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+ +.++.+.+. .+. | ....|..+...+.+.|++++|...|++..+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 233333221 110 0 1245666666677777777777777766654
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=9.6e-08 Score=78.32 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..|.-.|...|+...|.+-+++..+.. |.+..+|..+...|-+.|+.+.|.+.|++..+.. +-+....|..-..+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 344445555555555555555555532 2334445555555555555555555555544432 112333344444445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
..|++++|...|+.......-+ ...+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.+.....|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555544432111 123444444444455555555555555544321 11233334444444455555555
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
.+++.....+. + ...+.-..|+.--+.|+.+.+-++
T Consensus 194 ~~~~~~~~~~~-~--~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQRGG-A--QAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhccc-c--cHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555444432 1 333333444444444554444443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2.1e-07 Score=76.33 Aligned_cols=51 Identities=12% Similarity=-0.036 Sum_probs=19.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
+.....+.|++-.|..+++.....+. ++..+.-..|+.--..|+.+.+-++
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 33333344444444444443333322 3333333333333334444443333
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=7e-06 Score=78.93 Aligned_cols=375 Identities=11% Similarity=-0.015 Sum_probs=241.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-Hhh
Q 011919 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TII 166 (475)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 166 (475)
..+.-+...|..+.-.+.+.|+++.+.+.|++.... ..-..+.|+.+-..+...|.-..|+.+++.-......|+ ...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344557788888888888999999999999887663 344567777777788888888888888887654332243 333
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHhcc--CCC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 011919 167 YNNVIRLFC-EKGDMIAADELMKGMGL--IDL--YPDIITYVSMIKGFCNA-----------GRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 167 ~~~ll~~~~-~~g~~~~a~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~ 230 (475)
+-..-..|. +.|.+++++++-.+... .+. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 34667777766666544 111 12233444444444321 124567788888877553
Q ss_pred -CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC----
Q 011919 231 -AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAP---- 304 (475)
Q Consensus 231 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---- 304 (475)
.|++..| +.--|+-.++++.|++...+..+-+ -..+...|..+.-.+...+++.+|+.+.+...+ .|..-
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 3433333 4445777788999999999988852 246788888888888889999999998876543 32100
Q ss_pred --------------CHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHH--------hCC---
Q 011919 305 --------------NRVTISTLIKGFCVE-----------------------GNLDEAYQLIDKVV--------AGG--- 336 (475)
Q Consensus 305 --------------~~~~~~~li~~~~~~-----------------------g~~~~a~~~~~~~~--------~~~--- 336 (475)
-..|+..++..+-.. ++..++.+....+. ..+
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 011222222222100 00111111111100 000
Q ss_pred ------CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 337 ------SV--SS------GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 337 ------~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
.. |+ ...|......+.+.+..++|.-.+.+..+.. .-.+..|...-..+...|+.++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00 11 1234455666777788888887777776432 233455555556677889999999999888
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK--LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
...+ |.++.....+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|-+..+
T Consensus 711 l~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 711 LALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HhcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 8764 3477888999999999998888888 999999999 8999999999999999999998876543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=2.3e-06 Score=80.23 Aligned_cols=303 Identities=13% Similarity=0.016 Sum_probs=184.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDI-ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667677877777666665543221 1222 112223345667899999999999988763 334444442 2
Q ss_pred HHHH----hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 242 DGIC----RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP---ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2232 24555566665554211 112334445566678899999999999999998864 335667788888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 011919 318 VEGNLDEAYQLIDKVVAGGSV-SS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPDGLAC-S--VMIRELCLGG 390 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g 390 (475)
..|++++|...+++....... ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998875432 22 23456788889999999999999999864322 1112111 1 2233334444
Q ss_pred CHHHHHHHHHHHHHc---CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHH
Q 011919 391 QVLEGFCLYEDIEKI---GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--------LQGPYVDKIVEHLK 459 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~ 459 (475)
..+.+.+. +.+... ................++...|+.++|.++++.+...... ......-....++.
T Consensus 240 ~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 240 HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 43333332 222211 1000011122235667778899999999999998764322 11222233344667
Q ss_pred hcCCHhHHhhcccc
Q 011919 460 KSGDEELITNLPKI 473 (475)
Q Consensus 460 ~~g~~~~a~~l~~~ 473 (475)
..|+.+.|.+++..
T Consensus 319 ~~g~~~~A~~~L~~ 332 (355)
T cd05804 319 AEGNYATALELLGP 332 (355)
T ss_pred HcCCHHHHHHHHHH
Confidence 88999999887653
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.7e-06 Score=75.81 Aligned_cols=271 Identities=11% Similarity=-0.017 Sum_probs=155.8
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
.+-++.....+...+...|+.++|+..|+...-.+ |+. .....-...+.+.|+.+....+...+.... .-+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34556666667777777777777777777665432 221 111222223445666666666666554322 12333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.-.......++++.|+.+-++.++... -+...|-.-...+...|+.++|.-.|+...... |-+...|.-++..|..
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHh
Confidence 444444556667777777776665431 244444444456666777777777777766532 3456677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLI-KGF-CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
.|.+.+|.-+-+..... ++.+..+.+.+- ..+ .....-++|.++++.-+...+. -....+.+...+...|+.+.++
T Consensus 381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence 77777776655443332 223444444331 122 2223345666776666554322 1234555666666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.++++.... .||...-+.|.+.+...+.+++|...|....+.+
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 777776644 6677777777777777777777777777666643
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=8.7e-08 Score=85.40 Aligned_cols=222 Identities=12% Similarity=0.108 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIKGF 209 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~ 209 (475)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-+++.......++..++. .....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3334455555556544332 3332222 3444444444433333234444444444443332221222222 222334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----HhcC
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGKG 285 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 285 (475)
...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...+..++ .-.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHH-HHHHHHHHHHHHhCch
Confidence 4456666665555431 244455555556666666666666666665421 2222 12222222 2223
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL-KEAEKLF 364 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~ 364 (475)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455555555555433 3345555555555555555555555555555444322 333444444444444544 4444455
Q ss_pred HHHHH
Q 011919 365 SKMLA 369 (475)
Q Consensus 365 ~~m~~ 369 (475)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55443
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=3.9e-07 Score=77.51 Aligned_cols=194 Identities=10% Similarity=0.012 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHH-HHHHHHh
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN-VIRLFCE 176 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 176 (475)
...+..+.+..++..+++++....++. +.+....+.+..+|....++..|.+.|+++... .|...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444555566777777776665553 335566666666777777777777777776553 244444432 2344556
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKG--FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.+.+..|+.+...|... |+...-..-+.+ ....+|+..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 67777777777666532 222211111222 224566666666666655332 4445555555566677777777
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
+-|+...+-+ |. -....|+..+.. .+.|+++.|++...++.+.|++
T Consensus 165 qkFqaAlqvs-Gy-qpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVS-GY-QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhc-CC-CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 7777766632 22 234456554433 3456677777777777766654
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=6e-06 Score=72.16 Aligned_cols=339 Identities=12% Similarity=0.021 Sum_probs=161.9
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
+.|+.++|...+..+.... .++.+.+..+.-.+.-.|.+.+|.++-.+..+ ++..-..|.....+.++-++...
T Consensus 69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHH
Confidence 4466666666666655533 34444444444444445566666666555433 33333444445555566555555
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcC
Q 011919 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL-DGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
+-+.+.. ...---+|.+.....-.+.+|.+++.+.... .|+....|..+ -+|.+..-++-+.++++-..++
T Consensus 143 fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 5544432 1111223333333334567888888887765 34555555433 4566777777778887777664
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCC-----HHHHHHHH
Q 011919 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC--------------------------APN-----RVTISTLI 313 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li 313 (475)
++.++...|.......+.=.-..|.+-.+.+.+.+- -|. +..-..|+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 244555566555544443222222222222222210 000 01112344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL--VRTK-------RLKEAEKLFSKMLASGVKPDG-LACSVMI 383 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g-------~~~~a~~~~~~m~~~~~~p~~-~~~~~li 383 (475)
-.|.+.+++.+|..+.+++ .|+.. |.-++.+. +..| ...-|.+.|+-.-+.+..-|. .--.++.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred eeecccccHHHHHHHHhhc-----CCCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4567778888888777654 23211 33333332 2222 233455555443333322221 1122233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..+.-..++++.+.+++.+...-.. .|.. --.+..+++..|++.+|.++|-......++.+......+.++|.+.|.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~N--dD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTN--DDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--cchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 3333344555555555555544221 1222 223455555666666666666554444433333334455555555555
Q ss_pred HhHHhh
Q 011919 464 EELITN 469 (475)
Q Consensus 464 ~~~a~~ 469 (475)
.+.|.+
T Consensus 444 P~lAW~ 449 (557)
T KOG3785|consen 444 PQLAWD 449 (557)
T ss_pred chHHHH
Confidence 555544
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=7.1e-08 Score=85.97 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=158.5
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
.=.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33677888886555 322222234455666778888888876544 4444433 666666666655555445556666
Q ss_pred HHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 220 GLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 220 ~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.-+++....+..+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6555544433332 3333333445677789999999887542 345566677888999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 299 ALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .-
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 33444455555443 34688999999997664 45677888888889999999999999998887653 22
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 011919 375 DGLACSVMIRELCLGGQV-LEGFCLYEDIEKIG 406 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 406 (475)
+..++..++......|+. +.+.+++.++....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 456666677776777776 66778888888753
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=4.5e-05 Score=72.10 Aligned_cols=358 Identities=12% Similarity=0.078 Sum_probs=221.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..+..+.|+..+....+.. ..+..-|+.+.-..+..++.++|+..+......+ +-+...+.-+--.-++.|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3566777777776654422 2344455555555566678888888888877765 556666766666666777777777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHH
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMI------KGFCNAGRLEDACGLF 222 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~ 222 (475)
.......+.. +.....|.....++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777666542 2345567777777788888888888888776643 245555544322 2345567777777766
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH-HHHhcCCHHHHH-HHH------
Q 011919 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEAL-GIL------ 294 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~-~~~------ 294 (475)
..-... +.-....-..-...+.+.+++++|..++..+.... ||...|...+. ++.+..+.-++. .+|
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 654433 11122222344566778888888888888888753 66555554433 333232222222 333
Q ss_pred ----------------------------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC------
Q 011919 295 ----------------------------DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA----GG------ 336 (475)
Q Consensus 295 ----------------------------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~------ 336 (475)
..+.+.|+++ ++..+...|-.-...+-..++.-.+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 3333444332 223333333222222111111111111 11
Q ss_pred ----CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 337 ----SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 337 ----~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
-+|+. .++..++..|-..|+++.|...++....+ .|+. .-|..=.+.+..+|++++|..++++..+...
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-- 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-- 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--
Confidence 13333 45667888899999999999999999855 6764 3454555778999999999999999999763
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
+|...=..-..-..++++.++|.++.-...+.|.
T Consensus 437 -aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 -ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred -hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 2544444566677799999999999988888774
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.93 E-value=4.1e-05 Score=72.31 Aligned_cols=359 Identities=10% Similarity=0.003 Sum_probs=181.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
-..+..+...++.......|+.... ..+.-....|...+....+.+-.+.+..+|++..+ .++..-+--|..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHh
Confidence 3344445555555555555555432 23333445666666666667777777777777765 233345566667777
Q ss_pred cCChhHHHHHHHHhccCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcC--HHHHHHHHHHHH
Q 011919 177 KGDMIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLE---DACGLFKVMKRHGCAAN--LVAYSALLDGIC 245 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~ 245 (475)
.+++++|-+.+....... .+.+...|..+-...++.-+.- ....+++.+... -+| ...|++|.+-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 777777777776664321 1233344555544444433322 222333333322 223 245677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC--
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------------MMKEALGILDRMEALG-- 301 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~~-- 301 (475)
+.|++++|..+|++..+. ..++.-|+.+.++|+.-. +++-.+.-|+.+....
T Consensus 260 r~g~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HhhhhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 777777777777777663 234444444444443211 1122222233322211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 302 ---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS------SGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 302 ---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
-+-++..|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-.+|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 011122222211 12235555556666665542 111 134566777777777777777777777
Q ss_pred HHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CCC-----CchhhHHHHHHHHHhcC
Q 011919 367 MLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGF----------LSS-----VDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 367 m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~-----~~~~~~~~li~~~~~~g 427 (475)
..+-.. +.. .+|..-...=.+..+++.|+++.+...-..- .|. .+...|..+++..-..|
T Consensus 413 a~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 413 ATKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred hhcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765432 121 2222222223345566666666655443110 000 02344555555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
-++....+++++++..+ .++.........+.....++++-++.
T Consensus 492 tfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred cHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777776664 33343333344444444455444443
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=2e-05 Score=83.74 Aligned_cols=336 Identities=13% Similarity=-0.011 Sum_probs=204.2
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--C----CCCh--hhHHHHHHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--L----YPDI--ITYVSMIKGF 209 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~--~~~~~li~~~ 209 (475)
.....|++..+...++.+.......+..........+...|++++|...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777766432111223333344555667899999998888764321 0 1111 1122233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--cHHHHHHHHHHHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEGGDC-SP--NVVTYTSVIQIFC 282 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~ 282 (475)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++........ .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 244556667788999999999998876521100 11 1234455666788
Q ss_pred hcCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011919 283 GKGMMKEALGILDRMEA----LGCA--P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVS--SGGCYSSLVVEL 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 351 (475)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999999887654 2221 1 12334455566777899999999988875431 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchhhHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKMLAS--GVKPDGL--A-C-SVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-VDSDIHSVLLLGLC 424 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~--~~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 424 (475)
...|+.++|.+.+.+.... ....... . . ...+..+...|+.+.|.+.+........... .....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887542 1111110 1 0 1122344557899998888766544211100 01112446677788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 425 RKNHSVEAAKLARFMLKK----RIWL-QGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..|++++|...+++.... |... ...+...+..++.+.|+.++|.+.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999888764 3222 223566777888999999888776543
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.4e-05 Score=84.83 Aligned_cols=308 Identities=13% Similarity=0.007 Sum_probs=196.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC----C--CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh----hhH
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEF----D--LRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI----ITY 202 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~----~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 202 (475)
....+...|++++|...++...+. + ..+. ......+...+...|+++.|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556788999999988876432 1 0111 112223334566789999999999987653111121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC---CCcHH
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC---SPNVV 272 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~ 272 (475)
+.+...+...|++++|...+++.... |- .....++..+...+...|++++|...+++..... .+. .....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778899999999999887653 11 1112345566778889999999999988765521 111 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChh--h-
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL--GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVSSGG--C- 343 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~- 343 (475)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|...++...... ...... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677789999999999887542 1112 23344456667788999999999998875421 111110 0
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhh
Q 011919 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDI 415 (475)
Q Consensus 344 -~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 415 (475)
....+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |... ....+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS-DLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH-HHHHH
Confidence 011224455688999999998776532111111 11345666788899999999999988764 2211 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..+..++.+.|+.++|.+.+.+.++..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677788889999999999999998765
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.3e-06 Score=80.15 Aligned_cols=351 Identities=15% Similarity=0.148 Sum_probs=207.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CccCHHhHHHHHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE-G--------CVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~li~~~~~ 141 (475)
.++-+.|++-.... .+...|..+.+.+.+.++.+.|.-.+..|... | ..++ ++=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34455555444333 35567888888888888777776666555321 1 1222 232334445567
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|.+++|+.+|.+.++ |..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 8899999999998876 344555666789999999987654322 1235666666666677888888888
Q ss_pred HHHHH----------HCC---------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 222 FKVMK----------RHG---------CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 222 ~~~m~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
|++.. ... -..|...|......+-..|+.+.|+.+|..... |-.++...|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C 949 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKC 949 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEe
Confidence 77522 111 012333444444555566777777777766554 455666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------
Q 011919 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV---------- 352 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------- 352 (475)
-.|+.++|-++-++- | |......|.+.|...|++.+|...|-+... +...|+.|-
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 778888887776542 2 555666777888888888888888766543 222222221
Q ss_pred ---hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCCchhhHHHH
Q 011919 353 ---RTK--RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE--------DIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 353 ---~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~l 419 (475)
-.| +.-.|-++|++. |.. ....+..|.++|.+.+|+++-- +++...+.|..|....+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111 222233333332 221 1223334667777777665422 2333445555577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----------HcCCC----------------CCh----hhHHHHHHHHHhcCCHhHHhh
Q 011919 420 LLGLCRKNHSVEAAKLARFML----------KKRIW----------------LQG----PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~----------~~~~~----------------~~~----~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.+.++...++++|..++-... .++++ |+. ..+..+.+.|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777777777777766543322 11221 111 356778889999999988876
Q ss_pred ccccCC
Q 011919 470 LPKIGG 475 (475)
Q Consensus 470 l~~~ag 475 (475)
-...||
T Consensus 1167 KfTQAG 1172 (1416)
T KOG3617|consen 1167 KFTQAG 1172 (1416)
T ss_pred HHhhhh
Confidence 555554
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.5e-05 Score=76.36 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC--VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
+++..+....++...+-+.+.+++++...-.+- .-+...-|.||-...+.. ..+..+..+++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCc-hh------H
Confidence 444445555555555666666666655533221 112223333333333333 2344444444443321 11 2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+..++-+++|..+|++.. .+....+.||.- -+..+.|.+.-++.- .+.+|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 223344445555555555432 233333333331 233444443333221 345566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 328 (475)
.+|.+-|-+. .|+..|.-+++...+.|.+++-.+++...++..-.|... +.|+-+|++.+++.+.+++
T Consensus 1121 ~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 6666555332 244456666666666666666666666655554444433 3555666666665554443
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=0.00011 Score=70.96 Aligned_cols=341 Identities=15% Similarity=0.068 Sum_probs=222.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHH-HcCCHHHHHHHHHhcccC--CC--CCCHhh
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCE-KARLANEAMWVLRKMPEF--DL--RPDTII 166 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~ 166 (475)
..+.|..+...+...+.-..|..+++........| +...+-..-..|. +.+.++++++.-.+.... +. ......
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 44555566556666777788888888765544334 3444433344454 346677777666655541 11 123445
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011919 167 YNNVIRLFCEK-----------GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 167 ~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..++++.|.+..++..+.+-.-+..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55555555432 12456788888886654 3333343444456777889999999999999986667899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME----------------- 298 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------- 298 (475)
.|..+.-.+...+++.+|+.+.+.....- +.|......-+..-...++.++++.....+.
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 99999999999999999999999877641 1111111111111112233333322221111
Q ss_pred ----------------------------------HcC---------C--CCC------HHHHHHHHHHHHhcCCHHHHHH
Q 011919 299 ----------------------------------ALG---------C--APN------RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 299 ----------------------------------~~~---------~--~p~------~~~~~~li~~~~~~g~~~~a~~ 327 (475)
..| + .|+ ...|......+.+.+..++|..
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 000 0 011 0112344456667788888887
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHH
Q 011919 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFC--LYEDIEK 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~~~~ 404 (475)
.+.+.....+. ....|......+...|..++|.+.|...... .|+ .....++...+.+.|+...|.. ++.++.+
T Consensus 672 CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 672 CLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 77777664432 4556777777788899999999999988854 555 4677888889999998887777 9999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+ +.+...|..+...+-+.|+.+.|.+.|+......
T Consensus 749 ~d---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 749 LD---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hC---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 77 3488999999999999999999999999988764
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=2.7e-06 Score=86.57 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=184.9
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 307 (475)
+-+...|-..|......++.++|.++++++... .++.- -...|.++++.-...|.-+...++|++..+.. . .-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 335677888899999999999999999999874 21111 12357777777777888888999999998863 1 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIR 384 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 384 (475)
.|..|...|.+.++.++|.++++.|.++-- -....|...+..+.++++-+.|..++.+.++. -|. .......++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 688899999999999999999999987633 45678999999999999999999999999875 344 233444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcC
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSG 462 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g 462 (475)
.-.+.|+.++++.+|+....... -....|+.+++.-.++|+.+.+..+|++.+..++.+.. ..|...++.-.+.|
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayP---KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYP---KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCc---cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 55788999999999999998753 35678999999999999999999999999999876654 36778888888888
Q ss_pred CHhHHhhcc
Q 011919 463 DEELITNLP 471 (475)
Q Consensus 463 ~~~~a~~l~ 471 (475)
+.+.++.+-
T Consensus 1686 de~~vE~VK 1694 (1710)
T KOG1070|consen 1686 DEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHH
Confidence 887776653
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=9.6e-05 Score=73.38 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=169.4
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH
Q 011919 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQS-SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (475)
+|+.+.-..+.. ..+-+..-..++.....++ .|..+...-+.++ .-+..-+...+.+.++.+..-. .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi-LtAikad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI-LTAIKADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH-HHHhhcChHHHHHHHHHhccCC-chh------H
Confidence 555555555554 3344444455555554444 4444444444333 3344556677777777765543 333 3
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
...+...+-+++|..+|++.. .+....+.|+.- -+..++|.++-++.. ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 445666777888888888664 244455555543 356677777766543 345677777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
.+|.+-|-+. -|+..|..+++...+.|.+++-.+++.-..+... .|. .=+.+|-+|++.++..+..+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~--id~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPY--IDSELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Ccc--chHHHHHHHHHhchHHHHHHHh-
Confidence 7776655332 2666777778888888888887777766655321 232 3355777777777766655543
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
..||......+-+-|...|.++.|.-+|..... |..|...+...|++..|.+.-++. .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 246666666667777777777777766655422 666667777777777666655443 23
Q ss_pred HHHHHHHHHHHHhcCCHH
Q 011919 376 GLACSVMIRELCLGGQVL 393 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~ 393 (475)
..||..+-.+|...+.+.
T Consensus 1249 ~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hhHHHHHHHHHhchhhhh
Confidence 455655555555554443
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.5e-06 Score=79.32 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=186.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.+.|++.+|.-.|+..++.. +-+...|..|...-...++-..|+..+.++.+.. +-+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHH
Confidence 457888999999999888875 3377888888888888899999999999998853 456777778888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCC
Q 011919 289 EALGILDRMEALGCAPNRVTISTLI-----------KGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.|++.++.-.....+ |..+. ..+.....+.+..++|-++. ..+..+|...+..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999887654211 10010 11122223445555555554 44545778888999989999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
+++|.+.|+.++.. +| |...||.|-..++...+.++|+.-|.+..+.. | --+.+...|..+|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P-~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--P-GYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--C-CeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999865 55 56889999999999999999999999999963 3 2467778888999999999999999
Q ss_pred HHHHHHcC---------CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 436 ARFMLKKR---------IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 436 ~~~m~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|-..+... ..++..+|..|-.++.-.++.|.+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87766431 112345788888888888887755443
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=5.2e-06 Score=70.83 Aligned_cols=328 Identities=12% Similarity=0.064 Sum_probs=226.4
Q ss_pred CCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
|+......+.+.+..+.+..+++.|++++..-.+.. +.+......|..+|-...++..|-+.++++... .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 444555567888888899999999999998877764 237788899999999999999999999999754 46666665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011919 204 SM-IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 204 ~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
.. ...+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++....+ +..+.+.....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gCl 153 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchhe
Confidence 43 45667888999999999888753 2222222222 23445788999999988876532 44455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------ 342 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------ 342 (475)
..+.|++++|.+-|+...+-+---....|+..+. ..+.|+.+.|++...+++++|+...+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 7799999999999998877543334567776664 456789999999999999998764211
Q ss_pred ----------hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 011919 343 ----------CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 343 ----------~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
.+|.=...+.+.|+++.|.+.+..|.-. .-..|+.|...+.-. --.+++.+..+-+.-+.+.+. .
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP---f 308 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP---F 308 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC---C
Confidence 1222233455778899998888888532 234566777655322 234567777777777776543 3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHH-hcCCHhHHh
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLK-KSGDEELIT 468 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~ 468 (475)
...+|..++..||++.-++.|-.++-+--..-.. .++..|+. ++++. -.-..+++.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAF 366 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHH
Confidence 4689999999999999999998887664433222 34444444 33333 333444444
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.5e-05 Score=70.58 Aligned_cols=376 Identities=11% Similarity=0.033 Sum_probs=215.9
Q ss_pred hCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHH
Q 011919 69 CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANE 147 (475)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 147 (475)
|..++.+.|.+.|.-....+. ++...|+.=...+...++++.|.+=-...++. .|+ ...|.-...++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 457788888888877655443 47777877777888888888886655554443 454 4577777788888899999
Q ss_pred HHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHhccCC---CCCChhhHHHHHHHHHhc---------
Q 011919 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM---IAADELMKGMGLID---LYPDIITYVSMIKGFCNA--------- 212 (475)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~--------- 212 (475)
|+.-|.+-.+.. +.|...++-+..++.-.... -.--.++..+.... .......|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999888764 34666777777776211000 00000111110000 000111122222221110
Q ss_pred -CCHHHHHHHHHH-----HHHCC-------CCc----------------------CHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 213 -GRLEDACGLFKV-----MKRHG-------CAA----------------------NLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 213 -~~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
..+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111111100 00000 011 0112345566666677777777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST-------LIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~a~~~~~ 330 (475)
...... .-+..-++....+|...|.+.+....-....+.|-. ...-|+. +-.+|.+.++++.+...|.
T Consensus 248 ~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 248 AKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777662 234444455556666666666555555544444321 1122222 2234555566777777776
Q ss_pred HHHhCCCCCChhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 331 KVVAGGSVSSGGC-------------------------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 331 ~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
+.+.....|+... ...=...+.+.|++..|++.|.++++.. +-|...|..-.-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 6554433332111 1111445677899999999999999875 4467889988889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
|.+.|.+..|++-.+...+.. +.....|.--..++.-..+|++|++.|++.++.. +.+......+.++..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 999999999998888888764 2345556655666666778999999999998877 444444445444444
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=1.2e-05 Score=76.92 Aligned_cols=327 Identities=15% Similarity=0.108 Sum_probs=175.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhH
Q 011919 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167 (475)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 167 (475)
.+++.-...-...++.+...|+-+.|-++-+. +..+ -+.|..|.+.|....|...-..=.. +..|....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il 651 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEIL 651 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHH
Confidence 34443333334455666667777666554221 1122 2357788888887777665432211 23466677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------------HCCCC
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK----------------RHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----------------~~g~~ 231 (475)
..+..++.+..-+++|-++|+++.. |+ ..+.+|-+.+-+.+|.++-+-.. ..| +
T Consensus 652 ~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q 721 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-Q 721 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-h
Confidence 7777777777777777777776652 11 12222222222333333322110 000 0
Q ss_pred cCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 232 ANL--------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 232 ~~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
.|. ......+.+......|.+|+.+++.+..+. .-..-|..+.+.|...|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~----- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD----- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc-----
Confidence 000 011122344445566777777776665532 223345566667777777777777765421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011919 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 304 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 383 (475)
.++-.|..|.+.|+++.|.++-++.. |.......|-+-..-+-++|++.+|.++|-.. | .|+ ..|
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~ai 857 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAI 857 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHH
Confidence 24445667777777777777665542 33334445555555566667777776666443 2 333 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..|-+.|..+..+++.++-.... -..+...+..-|-..|+.++|.+-|-+. .-|...+..|..++-
T Consensus 858 qmydk~~~~ddmirlv~k~h~d~-----l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHGDH-----LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASEL 923 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhChhh-----hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhh
Confidence 55666666666665555433221 2345556666677777777777766544 234555666666677
Q ss_pred HhHHhhcccc
Q 011919 464 EELITNLPKI 473 (475)
Q Consensus 464 ~~~a~~l~~~ 473 (475)
++.|.++.+.
T Consensus 924 w~dayriakt 933 (1636)
T KOG3616|consen 924 WEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhc
Confidence 7777666654
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=2.7e-06 Score=79.07 Aligned_cols=253 Identities=15% Similarity=0.061 Sum_probs=186.3
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
.-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678999999999999988776 6678899999999999999999999999999875 337788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVI---------QIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
+|++.++...... +|-. |...- ..+..........++|-++ ...+..+|......|--.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~---p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK---PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC---ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999886632 1100 00000 1111222234445555444 455545677777888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
+++|.+.|+..+...+. |..+||.|...++...+.++|+..|.+.++. +|+- +..-.|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999986543 7789999999999999999999999999965 7763 344455667899999999999888
Q ss_pred HHHHcCC-------CCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 401 DIEKIGF-------LSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 401 ~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
......- .|..+..+|..|=.++.-.++.|.+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 7664311 111123567776666666666664443
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2.2e-08 Score=56.94 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=14.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011919 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 190 (475)
|++||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.1e-08 Score=57.00 Aligned_cols=28 Identities=36% Similarity=0.871 Sum_probs=10.6
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
.||..+|++||++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.0003 Score=66.10 Aligned_cols=319 Identities=14% Similarity=0.139 Sum_probs=190.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-------------------
Q 011919 103 MSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP------------------- 162 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~------------------- 162 (475)
.+-+.+..+.|+..++ |..+ +..+...-...+.+.+++++|+++|+.+.+.+.+-
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 4456788899888887 3333 34466666678889999999999999997654211
Q ss_pred --------CHhhHHH---HHHHHHhcCChhHHHHHHHHhccC-------CCCCChhh-------HHHHHHHHHhcCCHHH
Q 011919 163 --------DTIIYNN---VIRLFCEKGDMIAADELMKGMGLI-------DLYPDIIT-------YVSMIKGFCNAGRLED 217 (475)
Q Consensus 163 --------~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~-------~~~li~~~~~~~~~~~ 217 (475)
...+|.. ....++..|++.+|+++++...+. +-.-+... --.+.-.+-..|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 0112222 233567789999999999988321 11111111 1124445667899999
Q ss_pred HHHHHHHHHHCCCCcCHHHH----HHHHHHHHhc---------------------------------------------C
Q 011919 218 ACGLFKVMKRHGCAANLVAY----SALLDGICRL---------------------------------------------G 248 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~----~~ll~~~~~~---------------------------------------------g 248 (475)
|.+++...++... +|.... |.|+..-... +
T Consensus 243 a~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988753 233221 2221111000 1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
..+.+.++.... .+..|.. .+.+++..+. +...+.++.+++...-+....-.....-..+......|+++.|.
T Consensus 322 k~~q~r~~~a~l----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASL----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhC----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 111111111111 1112332 2333333322 22346777777777665432222445556677788899999999
Q ss_pred HHHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCCH
Q 011919 327 QLID--------KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIR----ELCLGGQV 392 (475)
Q Consensus 327 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~----~~~~~g~~ 392 (475)
+++. .+.+.+..| .+...+...+.+.++.+.|..++.+..+. .-.+......+++. --.+.|+.
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 9999 555555555 34555667777777777777777776542 11222233333333 23467999
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
++|..+++++.+.. +.|..+...++.+|++. +++.|..+-+.
T Consensus 475 ~ea~s~leel~k~n---~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFN---PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999964 34888999999999865 45666665444
No 102
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=3.5e-05 Score=69.80 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=143.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
.++...+..+.|+.+.+.+.+.. +-+..+|+.--.++...| ++++++..++++.+.+. .+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 34455677788888888887764 445556665555566666 57899999988887653 4666777666666666653
Q ss_pred --hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CC----hH
Q 011919 181 --IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GS----ME 251 (475)
Q Consensus 181 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~----~~ 251 (475)
++++++++++.+.+ +-+..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67788888887765 567888888888888889999999999999887644 666776665555544 22 24
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
+.++...++.... |-+...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~---P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN---PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC---CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5677776666642 56677788777777663 34456777777765543 3355666777777764
No 103
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2e-05 Score=69.06 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH-HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
.++.-...+.....+-++-+....+-+.+.+. .+.--++.. .|.+.. +++|+++|++....+ |+-...|.-
T Consensus 119 k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy 190 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVY 190 (557)
T ss_pred CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHH
Confidence 34444444445555566666666555554332 122222333 444444 788888888877643 444444443
Q ss_pred H-HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------HHCC------
Q 011919 171 I-RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM--------------KRHG------ 229 (475)
Q Consensus 171 l-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------------~~~g------ 229 (475)
+ -+|.+..-++-+.+++.-..+. ++.+....|.......+.=+-..|++-.+.+ .+.+
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 3 3455666667777776655543 1223333333322222211111111111111 1110
Q ss_pred ------CCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-------CHHHHH
Q 011919 230 ------CAAN-----LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-------MMKEAL 291 (475)
Q Consensus 230 ------~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~ 291 (475)
+-|. +..--.|+--|.+.+++.+|..+.+++.. ..|-......+ .++..| ...-|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgv--v~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGV--VFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHH--HHHHhhhhcCcHHHHHHHH
Confidence 0000 11112344457778888888887776643 12322222221 222222 244455
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 292 GILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+.|+..-+++..-|.. --..+..++.-..++++++-.++.+..--...|...+| +.++++..|.+.+|+++|-.....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh
Confidence 5555544444332221 12233344444456666666666665543333333333 566777777777777777665533
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 371 GVKPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++ |..+|. .|.++|.+++.++.|+.++-.+... .........+...|.+.+.+--|-+.|+++....
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~----~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP----SERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 333 334444 3445666777777765554333221 1112222333444556666666666666665443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=5.6e-06 Score=79.12 Aligned_cols=208 Identities=16% Similarity=0.121 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...-..+...+.+.|-...|..+++++.. |..+|.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33334566677777777777777776543 555677777777777777777666652 56666666555
Q ss_pred HHHHhc----------------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 314 KGFCVE----------------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 314 ~~~~~~----------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
+..... ++++++.+.|+.-.+.+.- ...+|-.+.-+..+.+++..|.+.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 544333 4444454444444433221 23456666666667778888888887
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 366 KMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 366 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +-.+|...+....+.|.+++|++.+..+.+...
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 77643 555 467888888888888888888888888876633 345677777777788888888888877775422
Q ss_pred -CCChhhHHHHHHHHHh
Q 011919 445 -WLQGPYVDKIVEHLKK 460 (475)
Q Consensus 445 -~~~~~~~~~l~~~~~~ 460 (475)
..|+.+...++....+
T Consensus 619 ~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hcccchhhHHHHHHHHh
Confidence 2355555555555444
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2e-05 Score=80.56 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=143.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYP---DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|-..|......++.++|.+++++.+.. +++- -...|.++++.-...|.-+...++|++..+.- -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4455666666777777777777777776541 1111 12356666666666677777777777777642 1245667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---RVTISTLIKG 315 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 315 (475)
.|...|.+.+.+++|.++++.|.+. . .-....|...+..+.+.++-++|..++.+..+. -|. .......+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-F--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-h--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7777788888888888888887774 2 245567777777777777777777777776654 222 2333444555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 393 (475)
-.+.|+.+++..+|+..+...++ -...|+..|+.-.++|+.+.+..+|++....++.|.. ..|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 56777777777788777766544 3456777777777778878888888877777665532 33444444333334433
Q ss_pred H
Q 011919 394 E 394 (475)
Q Consensus 394 ~ 394 (475)
.
T Consensus 1689 ~ 1689 (1710)
T KOG1070|consen 1689 N 1689 (1710)
T ss_pred h
Confidence 3
No 106
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=9.3e-05 Score=67.08 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=55.4
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
..+...+..++|+.+.+++++.. +-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.-...+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 33444455555555555555432 222333443333333444 345555555555544322 333344333333333331
Q ss_pred --HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 251 --ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 251 --~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
++++.+++++.+.. +.+..+|+...-++...|+++++++.++++.+.+
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 34445554444432 2344455544444445555555555555554443
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=0.00022 Score=62.48 Aligned_cols=297 Identities=13% Similarity=0.057 Sum_probs=162.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHHHHHhcC
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIKGFCNAG 213 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~ 213 (475)
+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.-+....+. +||-..-. .-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344444555555655555555421 111112222233455555555555555554432 34432211 1122344556
Q ss_pred CHHHHHHHHHHHHHCCCCc--CH------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAA--NL------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~--~~------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.++.|..=|+...+....- .. ......+..+.-.|+...|+.....+.+. .+-|...|..-..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHH
Confidence 6666666666555542100 00 11122334455567777777777777763 2456666666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHH--------
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG----CYSSL-------- 347 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l-------- 347 (475)
+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.++.+ ||.. .|-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHH
Confidence 7777777777776666555442 2344555555666677777777777777776644 3321 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 348 -VVELVRTKRLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 348 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+......+++.++++..+...+......... +..+-.++...|++.+|++...+..+.. +.|+.++.--..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence 1223345667777777776665532211222 3334445566678888888888777753 23577777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.-...+++|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 77778888888777777655
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=3.8e-06 Score=73.60 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
..+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555544443311 1122344444455555555555555444443
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.1e-05 Score=67.87 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467777887776444322211 10 0122356667777777777776543 677888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
++|...|++..+.. .-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD---ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999888763 22556666666654 56676 588999999998875 2367888888888999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 011919 435 LARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 435 ~~~~m~~~~~~~~~~~~~~l 454 (475)
.++++++.. +|+..-+..+
T Consensus 166 ~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhC-CCCccHHHHH
Confidence 999998887 5555554443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=8e-06 Score=71.55 Aligned_cols=192 Identities=10% Similarity=-0.039 Sum_probs=115.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTI 309 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 309 (475)
.....+..+...+.+.|++++|...|+++......-+....++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 456677777788888888888888888887742110111245666777888888888888888888765321111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 310 STLIKGFCVE--------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 310 ~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..+..++... |+.++|.+.++.+.+..... ...+..+... +..... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHHHH------HH--------HHHHH
Confidence 3344444433 56677777777776654321 1112111111 000000 00 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...+.+.|++++|...++.+.+.....+.....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455778888888888888888764221224567888888888888888888888777654
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.2e-05 Score=77.85 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=166.4
Q ss_pred ccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC-C--------
Q 011919 126 VVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-D-------- 194 (475)
Q Consensus 126 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-------- 194 (475)
.-|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.++|++..+.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 446777777776 6778899999988877665 4567999999999998888887766666431 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
-.|+ .+=.-+.-.....|.+++|+.+|++-++. ..|=..|-..|+|++|.++-+.-.+ . .=..||
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i---HLr~Ty 861 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I---HLRNTY 861 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e---ehhhhH
Confidence 1222 22223333445778899999999987653 3344567778999999988764332 1 123356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 275 TSVIQIFCGKGMMKEALGILDRME----------ALG---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
.....-+-..++.+.|++.|++.. ... -..|...|......+...|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 666666667778888888776532 110 112344455555566677888888888877655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|-++++..|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|.+...
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667788888889999888887653 3555666678888888999999888877654
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.2e-05 Score=75.23 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=177.2
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (475)
.+|-...-..+...+.+.|-...|..+|++.. .|.-+|.+|+..|+..+|..+..+..+. +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34555555566778888999999999998764 3777888999999999999998887762 788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-....+..+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQL 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHH
Confidence 888877766788888888764332 22222223344789999999998877753 45667888888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 285 GMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
+++..|.+.|.....- .| +...|+.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+-...+.|.+++|++.
T Consensus 533 ek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999887764 34 4667999999999999999999999999888744 345566677778899999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHH
Q 011919 364 FSKMLASG-VKPDGLACSVMIREL 386 (475)
Q Consensus 364 ~~~m~~~~-~~p~~~~~~~li~~~ 386 (475)
+.++.+.. ..-|......++...
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHH
Confidence 98887521 112444444444443
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.0005 Score=63.96 Aligned_cols=404 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+-+.+..+++.......+.+..++.... ..++.++..+..-++...+.++++.+..+|..+... ..+...|..-|.
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 5566666776664445566666666553 345566777777788888889999999999988776 344666666665
Q ss_pred HHHH-cCCHHH----HHHHHHhcc-cCCCCC-CHhhHHHHHHH---------HHhcCChhHHHHHHHHhccCCCCC----
Q 011919 138 LCEK-ARLANE----AMWVLRKMP-EFDLRP-DTIIYNNVIRL---------FCEKGDMIAADELMKGMGLIDLYP---- 197 (475)
Q Consensus 138 ~~~~-~~~~~~----A~~~~~~~~-~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~---- 197 (475)
--.+ .++... -.+.|+-.. +.|+.+ +-..|+.-+.- +..+.+.+...++++++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3332 232222 223333322 234322 22334444432 334445666777777776421110
Q ss_pred --ChhhHHHHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCcCH---------------HHHHHHHHHHHhcC---
Q 011919 198 --DIITYVSMIKGF-------CNAGRLEDACGLFKVMKR--HGCAANL---------------VAYSALLDGICRLG--- 248 (475)
Q Consensus 198 --~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~g~~~~~---------------~~~~~ll~~~~~~g--- 248 (475)
|-..|..=|+.. -+..++..|.++++++.. .|...+. ..|..+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111222212111 122335566666665543 2321111 11222222111000
Q ss_pred ---C--hHHHHHHHHHHHhcCCCCCCcHHHH-HHH----HHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 249 ---S--MERALELLGEMEKEGGDCSPNVVTY-TSV----IQIFCGKGM-------MKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 249 ---~--~~~a~~~~~~~~~~~~~~~~~~~~~-~~l----i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
. -....-++++.... .+..|++... ... -+.+...|+ .+++..+++...+.-..-+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111110 1111221110 000 011222222 3344444444433222223333333
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 011919 312 LIKGFCVEG---NLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIREL 386 (475)
Q Consensus 312 li~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 386 (475)
+...--..- ..+....+++++... ...| .-+|-.+++.-.+..-++.|..+|.+..+.+..+ +....++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 322111111 133444444444432 2222 2235555665556666666666666666655555 445555555544
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCH
Q 011919 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~ 464 (475)
| .++.+-|.++|+-=.++-. .+...-...++-+...++-..|..+|++.+..+++++. ..|+.++..-..-|+.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 4 3455666666664443311 12233345555566666666666666666666444333 4566666666666666
Q ss_pred hHHhhcc
Q 011919 465 ELITNLP 471 (475)
Q Consensus 465 ~~a~~l~ 471 (475)
+.+.++.
T Consensus 489 ~si~~le 495 (656)
T KOG1914|consen 489 NSILKLE 495 (656)
T ss_pred HHHHHHH
Confidence 6665554
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00012 Score=61.84 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=82.4
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 222 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
.+.+.......+......-...|+..|++++|++..+.... .+.... =+..+.+..+.+-|.+.+++|.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAAL--NVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33333333333333333334456666666666666554211 122222 2333455556666666666666532
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 302 CAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+... .-++.
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 44555555554443 23456666666666543 23455556666666666666666666666666543 22344
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCLGGQ-VLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~~g~-~~~a~~~~~~~~~ 404 (475)
+...++..-...|. .+-..+.+..++.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 44444433333332 2333344444444
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00012 Score=61.83 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=154.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
-..|++..++.......... -++..-..+.++|...|++... ...++... .|.......+.......++.+..+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33466666555544433321 3344444456677777765433 33333322 234444444444444444444433
Q ss_pred -HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 185 -ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444443333333344444567888999999998887621 3444444455677888899999999999872
Q ss_pred CCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011919 264 GGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
.+..+.+.|..++.+ .+.+.+|+-+|++|.++ ..|+..+.+....++...|++++|..++++.+.++..
T Consensus 167 -----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 167 -----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred -----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 466677766666654 45788999999999875 5788889999888999999999999999999988765
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011919 340 SGGCYSSLVVELVRTKRL-KEAEKLFSKMLAS 370 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 370 (475)
+..+...++.+-...|.. +...+.+.++...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455555555554455554 4455666776654
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=0.0003 Score=61.65 Aligned_cols=296 Identities=11% Similarity=0.023 Sum_probs=207.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM---IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS- 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 238 (475)
++.-.--+...+...|++..|+.-|....+ -|+..|.++ ...|...|+...|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 333344466677788999999999988874 344445444 34677888888888888888876 56643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH----------HHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNV----------VTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
.-...+.+.|.++.|..=|+...+....-.... ..| ...+..+...|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223467899999999999999988531100111 112 223445667899999999999998863 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HH-
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC----SV- 381 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~- 381 (475)
..|..-..+|...|++..|+.=++...+..-. +...+..+-..+...|+.+.++...++-++. .||...+ ..
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 88888889999999999999888877665443 4555666778888999999999999988865 5665432 21
Q ss_pred --HHH------HHHhcCCHHHHHHHHHHHHHcCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 382 --MIR------ELCLGGQVLEGFCLYEDIEKIGFL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 382 --li~------~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+.. .....+++.++.+-.+...+.... ++.....+..+-.++...|++.+|++...+.++.. +.|..++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 111 234457777888877777776433 33344556677777888899999999999998876 56677776
Q ss_pred HHHHHHHhcCCHhHHhh
Q 011919 453 KIVEHLKKSGDEELITN 469 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~ 469 (475)
.-..+|.-...++.|..
T Consensus 346 dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 66777776666666543
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.00031 Score=65.22 Aligned_cols=360 Identities=13% Similarity=0.019 Sum_probs=220.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCCh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 180 (475)
......|+++.|+..+....... +++...|..-..+|.+.|++++|++=-.+..+. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34556799999999999988876 558888888889999999999998776666654 344 45788899999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHHCC---CCcCHHHHHHHHHHHHhc-------
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA---CGLFKVMKRHG---CAANLVAYSALLDGICRL------- 247 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~------- 247 (475)
++|+.-|.+-++.. +.+...++.+..++.......+. -.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887765 45666777777777211000000 00111111000 000112233333322211
Q ss_pred ---CChHHHHHHHHHHH-----hcC-----CCCCC------------c----------HHHHHHHHHHHHhcCCHHHHHH
Q 011919 248 ---GSMERALELLGEME-----KEG-----GDCSP------------N----------VVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 248 ---g~~~~a~~~~~~~~-----~~~-----~~~~~------------~----------~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.++..|.-.+.... ..+ .+..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111211111000 000 00001 0 1124456666677778888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHHhcCCHHHHHHHHH
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS-------LVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~ 365 (475)
-+....+.. -+..-++....+|...|.+..+...-+...+.|... ..-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888777654 355556677778888888888877777766655432 122332 3346666788888999888
Q ss_pred HHHHCCCCCCHHHHHH-------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 366 KMLASGVKPDGLACSV-------------------------MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~-------------------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
+.+.....|+..+-.. =-..+.+.|++..|...|.++++.. |.|...|....
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRA 399 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRA 399 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHH
Confidence 8765544444322110 1122456688888888888888876 34788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
-+|.+.|.+.+|++=.+..++.. ++....|..=..++.-..+++.|.+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888898888888877777775 4444444444555555566666655443
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=0.00011 Score=74.36 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
.+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+.-.|... +.++|.+++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44445555555555555555555555432 33444445555444444 555555544443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=2.1e-05 Score=66.24 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+-..+...|+-+....+....... ...|............+.|++..|...+.+...... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455666667666666666554432 122444445566667777777777777777766543 3667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHh
Confidence 77777777777776642 1233455666666667777777777777776654 2255666667777777777777776
Q ss_pred HHHHH
Q 011919 435 LARFM 439 (475)
Q Consensus 435 ~~~~m 439 (475)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 65443
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=0.00056 Score=65.94 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=88.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
+.+......+.+|+.+++.+...... ..-|..+.+.|...|+++.|.++|.+. + .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 44455566777788888777665432 234667777888888888888887654 2 244566778888888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.|.++-.+.... ......|-.-..-+-+.|++.+|.+++-.. | .|+ ..++.|.+.|..+...+++
T Consensus 808 ~da~kla~e~~~~----e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP----EATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHH
Confidence 8887776665542 224455666666666778888887775332 2 233 4567778888877777665
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=9.9e-05 Score=74.74 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=155.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII-TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++...+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567888888888899999999998866654 34433 333333355555554433332 344
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
.......++.-+..+...+... .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|....|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 4444555565555555555552 2455678888999999999999999999999886 55788899999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHH
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-------------------GVKPDGLACSVM 382 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~l 382 (475)
+++|.+++.+.+.. |...+++..+.++|.++... |..--..++-.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 99999999887664 34444555555555555543 222223344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQ 447 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 447 (475)
...|...++++++..+++.+.+... .|.....-++.+|. +++.. ...|++.++ .|+..+
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~---~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDN---KNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCC---cchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 5566677778888888888887652 35666677777765 33333 344444443 344444
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=0.00012 Score=73.25 Aligned_cols=183 Identities=9% Similarity=0.021 Sum_probs=135.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.++..+-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|...++.....+.. +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 456888888999999999999999999998885 444 556677788889999999999999999887654 5667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+..++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+..- +....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~~----- 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHHH-----
Confidence 8888999999999999999998742 23367888888888999999999999999887642 23455555432
Q ss_pred CCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC
Q 011919 427 NHSVEAAKLARFMLKKR----IWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (475)
+...-..+++++.-.+ .+.........+..+.+...
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc
Confidence 3334455555555433 33444456666666655543
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=8.3e-06 Score=64.93 Aligned_cols=110 Identities=7% Similarity=-0.086 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHH
Confidence 4456677778888888888888887653 3356777777788888888888888888888754 24677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+.|++++|++.|+..++.. +.++..+.....+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88888888888888888776 45555554444433
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=4.8e-05 Score=64.07 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=79.9
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCC--hHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGS--MERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~a 253 (475)
.++.+++...+++..+.+ +.|...|..+...|...|++++|...|++..+... -+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666665544 56677777777777777777777777777776642 256666666665 355565 4777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+++++..+.. +.+..++..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD---ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777653 345666777777777777777777777777665
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=5.2e-05 Score=63.97 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+-+....+....... .+.|....+..+....+.|++..|...+++...-. ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444455555555555443322 12344455556666666666666666666665433 556666666666666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|..-|.+..+.-.. +....+.+.-.|.-.|+.+.|..++......+ +.|..+-..+.......|++++|.++...
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666666554322 44455555555566666666666666655532 23555555555555666666666655543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00034 Score=64.36 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=62.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 395 (475)
...|++++|+..++.++..-. -|...+....+.+.+.|+.++|.+.++++... .|+ ....-.+.++|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345566666666666555432 24444455555566666666666666666644 444 23333444556666666666
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+++...... +.|...|..|..+|...|+..++.....+
T Consensus 394 i~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666655543 23555566666666555555555444333
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=5.4e-05 Score=75.69 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=60.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
++..+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444444444445555555555555444432 1122333444444445555555555555444432 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555544422 11344444444455555555555555554443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00073 Score=62.29 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=59.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 288 (475)
...|+.++|+..++.+.+.- +-|.+........+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChH
Confidence 34555666666666655542 224444445555566666666666666665553 233 334444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
+|+.+++..... .+-|...|..|.++|...|+..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHH
Confidence 666666555544 2335555666666666655555443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=3.2e-05 Score=61.57 Aligned_cols=92 Identities=10% Similarity=-0.094 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34455555666666666666555443 3455555555566666666666666666655543 235555555555666666
Q ss_pred ChHHHHHHHHHHHh
Q 011919 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666555
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=0.00012 Score=57.80 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|..+++...... +.+...+..+...+...
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Confidence 3333444444444444444443332 1233444444444444444444444444443321 22333333344444444
Q ss_pred CCHHHHHHHHHHHHH
Q 011919 285 GMMKEALGILDRMEA 299 (475)
Q Consensus 285 g~~~~a~~~~~~m~~ 299 (475)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.19 E-value=0.0016 Score=65.14 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++...+...|-...+.. +-=...|..|...|....+..+|.+.|+...+.+ ..+...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33444544443333322 2224577788888888778889999999887755 346777888889999999999998884
Q ss_pred HHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011919 188 KGMGLIDLYPDI--ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
-...+.. +.-. .-|....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|.++|.++...
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3332211 1111 22333444567788888888888888776533 7788889999999999999999999888773
Q ss_pred CCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 266 DCSPNVVTYTS--VIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 266 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|+. .|.. ..-..+..|.+.+|+..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2222 22345678888888888876653
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=6.6e-05 Score=59.25 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444455555555554444332 2334444444444545555555555555444432 2234444444445555
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0026 Score=53.62 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
|++++|+++++.+.+.+ |.|.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 100 ~~~~~A~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hchhhHHHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 34444444444444322 233333333333333333333444333333332 22344444444444444444444444
Q ss_pred HHHHHHh
Q 011919 328 LIDKVVA 334 (475)
Q Consensus 328 ~~~~~~~ 334 (475)
.+++++-
T Consensus 176 ClEE~ll 182 (289)
T KOG3060|consen 176 CLEELLL 182 (289)
T ss_pred HHHHHHH
Confidence 4444443
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=0.0029 Score=63.33 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCC-CCCCHhhHHHHHHHH
Q 011919 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~ 174 (475)
.|..+...++..-+...|...|+...+.. .-+......+...|++..+++.|..+.-..-+.. ...-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555556677777777766654 5577788888999999999999999844333221 011222344455567
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCChHH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS--ALLDGICRLGSMER 252 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~ 252 (475)
.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+.... .|+ .+|. -....-+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 78889999999998887765 668889999999999999999999999887765 332 2222 22334566788888
Q ss_pred HHHHHHHHHh
Q 011919 253 ALELLGEMEK 262 (475)
Q Consensus 253 a~~~~~~~~~ 262 (475)
|...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=5e-06 Score=47.90 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00023 Score=56.84 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 324 (475)
.++...+...++.+.....+.+......-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555432111111222223334455555555555555555544311111 122233444455555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
|...++......+ ....+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544222211 222344444555555555555555543
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0016 Score=54.89 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=127.2
Q ss_pred cCChHHHHHHHHHHHhcC-CC-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 011919 247 LGSMERALELLGEMEKEG-GD-CSPNVV-TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IKGFCVEGNL 322 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~-~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~ 322 (475)
..+.++..+++.++.... .+ ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+ .-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 456788888888876531 11 233433 35556666777888888888888887652 333222222 1223456888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|+++++.+++.+. .|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888888888888773 35555665556666677777888777777664 3567888888888888888888888888888
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKN---HSVEAAKLARFMLKKR 443 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 443 (475)
.-.. |.+...+..+.+.+.-.| +.+.|.+++.+.++..
T Consensus 181 ll~~---P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ---PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8753 235566666666655443 5666778888877665
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.5e-06 Score=48.10 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 305 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.00025 Score=65.72 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334445555677777777777777543 33 33446666666777777777777777543 33566666666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
++++.|+++.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777642 3445577777777777777777777777664
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00016 Score=57.78 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~ 384 (475)
|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+...+....|+. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36666666666776666543221 122333445666777777777777777765422221 22333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+...|++++|+..++...... .....+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775543322 23455666777777777777777777654
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.013 Score=58.33 Aligned_cols=224 Identities=9% Similarity=0.067 Sum_probs=123.3
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHH
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 183 (475)
..+++..|....+.+.+. .|+.. |..++. ...+.|..++|..+++.....+. .|..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 346677777777666554 23322 222333 34567777777777776655443 2677777777777778888888
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----------ChHHH
Q 011919 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG----------SMERA 253 (475)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~a 253 (475)
..+|+..... .|+..-...+..+|.+.+++.+-.++--+|-+. .+-+.+.+=+++..+.+.- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888777643 466666677777777777766544444444332 1223333333444333321 12335
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
.+.++.+.+.+ |---+..-.......+-..|++++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555543 21111111222233444566677777776 33333322333344445566666677777777777776
Q ss_pred HhCCC
Q 011919 333 VAGGS 337 (475)
Q Consensus 333 ~~~~~ 337 (475)
...|.
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 66653
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.9e-06 Score=47.24 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 304 (475)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00029 Score=65.28 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.|+..+...++++.|.++++++.+.+ |+ ....++..+...++-.+|.+++++.++.. +-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555554443 21 12334444444445555555555544331 112333333333444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
+.+.|.++.+++.+.. |.+..+|..|..+|.+.|+++.|+-.++
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555555555432 1244455555555555555555554443
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=6.8e-06 Score=46.98 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=8e-05 Score=69.23 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=70.9
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 202 (475)
.+.+......+++.+....+++++..++-+.... ....-..|.+++++.|.+.|..+.+++++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555555566666555666666665555442 11122334456666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666555444555555444444444
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=0.00012 Score=68.05 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=86.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 194 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.++..=.. .|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCCh
Confidence 33556667777777777777777777777777664 2222334556788888888888888888777666 5677888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
.++|.+|+.+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777666666666666655555544
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00033 Score=53.72 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
++..+...+.+.|++++|.+.|..+.+.. |+ ...+..+..++...|+++.|...++.+.......+....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34556666777777777777777776542 22 2345556667777777777777777777653221112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..++.+.|++++|.+.++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6777777777788887777777765
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.022 Score=56.78 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=112.8
Q ss_pred HHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC
Q 011919 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144 (475)
Q Consensus 65 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 144 (475)
+...+..++...|++-......+++-.+....+..+ .+.+.|+.++|..+++.....+.. |..|...+-..|.+.++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 333333455566666655555544333222222221 345667777777777766555533 67777777777777777
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC----------
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------- 214 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------- 214 (475)
.++|..+|++.... -|+......+..+|++.+++.+-.+.--+|-+ ..+.+...+=++++.....-.
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 77777777777654 35566666666677776665543333222222 112233333344443332111
Q ss_pred HHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011919 215 LEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+. -.+.+...-+.-+..+...+++.+..+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHH
Confidence 223444445444433 11122222223334455566666666662 22221 111222222334444555555555555
Q ss_pred HHHHHHHcC
Q 011919 293 ILDRMEALG 301 (475)
Q Consensus 293 ~~~~m~~~~ 301 (475)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 555555443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.90 E-value=0.00023 Score=51.87 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011919 320 GNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTK--------RLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444443321 22344555666666666666666666665544
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00024 Score=51.75 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEG--------NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444455666666666666666666 666666666666655442 2334566667777777777777777766
Q ss_pred HHHHh
Q 011919 349 VELVR 353 (475)
Q Consensus 349 ~~~~~ 353 (475)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.0011 Score=50.78 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+.....+.+....++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444444444444444444432110 012233334444444444444444444444321111111223333444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011919 283 GKGMMKEALGILDRMEA 299 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~ 299 (475)
+.|+.++|...++++.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 44444444444444444
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.3e-05 Score=42.92 Aligned_cols=29 Identities=41% Similarity=0.907 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3e-05 Score=43.08 Aligned_cols=29 Identities=41% Similarity=0.753 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.005 Score=55.36 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVK-----PDGL-ACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+..+...+.+.|++++|.++|++....... .+.. .+-..+-.+...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555666666666666555443211 1111 111122233445566666666665554
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0023 Score=48.59 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++.......++.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888887776544 2345556667777888888888888777653211112333334445667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
..|+.++|++.+-..+... ...|..-+..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 7888888888776665432 235555555553
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.74 E-value=0.041 Score=51.82 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
.+....+++++...-..--..+|..+|+...+..-+..|..+|.+..+.+..+ ++..+++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 56666677776654323334578888999999999999999999999988777 77888899988765 67789999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 366 KMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 366 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
--++. .+| ..-....+.-+...|+-..++.+|++....++.++....+|..++.--..-|+...+.++-+++...
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76654 334 3444566777888999999999999999987666667789999999999999999999998777653
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00084 Score=48.63 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...+... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHHH
Confidence 4445566666777777777777766542 12234555566666667777777777777766542 2345666677777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011919 424 CRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~ 442 (475)
...|++++|.+.+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777766543
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.0011 Score=54.87 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011919 269 PNVVTYTSVIQIFCG-----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343 (475)
Q Consensus 269 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 343 (475)
.+..+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.|++.+-+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 466666666666654 35666677777777788888888888888777654 3221 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.++...|- .+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111211111 233556666666666666666666666666665544
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00072 Score=48.99 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33333444444444444433321 1122333333333334444444444444433322 112233333334444444444
Q ss_pred HHHHHHHHH
Q 011919 252 RALELLGEM 260 (475)
Q Consensus 252 ~a~~~~~~~ 260 (475)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444333
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0042 Score=51.23 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555554332221 23444555555555555555555555554
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0044 Score=48.90 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|.++|+-+...+ +-+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34444555666666666666555433 33444455555555556666666666666655543 25555555666666666
Q ss_pred ChHHHHHHHHHHHh
Q 011919 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0021 Score=52.88 Aligned_cols=119 Identities=11% Similarity=-0.040 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHH
Confidence 345556666666777777777777776542222 12356666667777777777777777777642 1234455555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCC
Q 011919 420 LLGLC-------RKNHSVEAAKLARFMLKK---RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 420 i~~~~-------~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~ 463 (475)
...+. ..|++++|...+++.... .+..++..+..+...+...|+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 55555 777777666666554422 223444444444444444444
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.0006 Score=56.29 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=19.2
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4455555566555555666666655555554443
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.014 Score=52.88 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 191 (475)
.+.+..++.+|+..+...++... -+..-|..-+..+...|++++|.--.+.-.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 34445556777777776666542 244555555555666666666665554443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0031 Score=58.70 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|+..|++.++.+.. +...|..+..+|...|++++|+..++++++.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666665433 34555566666666666666666666666542 123445555555666666666
Q ss_pred HHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|...|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00016 Score=51.49 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 354 TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---CCHHHHHHHHHHHHHhCCHHHH
Confidence 35556666666666554211 1223333345555666666666666655 22111 1223333445555666666666
Q ss_pred HHHHHH
Q 011919 433 AKLARF 438 (475)
Q Consensus 433 ~~~~~~ 438 (475)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665554
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.003 Score=56.56 Aligned_cols=128 Identities=11% Similarity=0.111 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 34445555555555555555555554332 1122233322222 11133444455555555442 2334444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
.+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555554433 11111 234444444444444444444444443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.012 Score=52.86 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcC--CCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHH-HH
Q 011919 240 LLDGICRL-GSMERALELLGEMEKEG--GDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-----NRV-TI 309 (475)
Q Consensus 240 ll~~~~~~-g~~~~a~~~~~~~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~-~~ 309 (475)
+...|... |++++|.+.|++....- .+. ..-...+..+...+.+.|++++|.++|++........ +.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445555 66677766666654410 000 0012234445556666666666666666655432211 111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
...+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22223444456666666666666543
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0018 Score=58.02 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
+|-.++...-+.+..+.|..+|.+.++.+ ..+..+|-..... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555556666666666665432 2223333333333 22234555566666666554 334556666666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+.|+.+.|..+|++.... ++++ ...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666553 1222 235666666666667776666666666653
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00029 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011919 240 LLDGICRLGSMERALELLGE 259 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~ 259 (475)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.035 Score=48.46 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
|.+.|.+..|..-++.+.+.-...+........++.+|...|..++|.+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 444444444444444444432211122333344444444444444444443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0098 Score=49.04 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 344555555566666666666666554322211 3455566666666666666666666666532 22344455555
Q ss_pred HHHHhcCCHHH
Q 011919 279 QIFCGKGMMKE 289 (475)
Q Consensus 279 ~~~~~~g~~~~ 289 (475)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0034 Score=51.54 Aligned_cols=64 Identities=14% Similarity=-0.030 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|.+.++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555666666777766666665542221 123566666667777777777777766665
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.048 Score=47.63 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+...|.+.|.+..|..-++.+.+.-.+.+........++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345556777777777777777776544444444555566677777777777766655543
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.1 Score=50.70 Aligned_cols=205 Identities=11% Similarity=0.054 Sum_probs=122.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC-CCCCC--------HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF-DLRPD--------TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (475)
.|.+..|..+.......-.++.|+..|-+.... |++.- ...-..=+.+ --|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 688899998888877777888888888777653 43211 1111111222 2488899999888776543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
..|..+.+.||+-.+.++++.=-. +. ..-...++.+...+.....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 346667778888777776653110 10 011356777777777777788887777654321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
...+.++.+..++++...+-..+. .+....-.+..++.+.|.-++|.+.|-+. +. | .+.+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHH
Confidence 124555555555555554444433 24445556667777777777776655332 11 1 2344556666
Q ss_pred CCHHHHHHHHHHH
Q 011919 355 KRLKEAEKLFSKM 367 (475)
Q Consensus 355 g~~~~a~~~~~~m 367 (475)
+++.+|.++-+..
T Consensus 892 nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 6776766665544
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0028 Score=54.95 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
+.+++.+|+..|.+.++.. .-|.+-|..=..+|++.|.++.|++-.+...... +....+|..|..+|...|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHHH
Confidence 4455555555555555432 1233444444445555555555555554444432 12344555555555555555555
Q ss_pred HHHHHHHHHc
Q 011919 433 AKLARFMLKK 442 (475)
Q Consensus 433 ~~~~~~m~~~ 442 (475)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 5555555444
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0046 Score=57.53 Aligned_cols=88 Identities=9% Similarity=-0.040 Sum_probs=41.1
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 334445555555555554432 1234444444445555555555555555544432 22334444444444555555555
Q ss_pred HHHHHHHHHC
Q 011919 219 CGLFKVMKRH 228 (475)
Q Consensus 219 ~~~~~~m~~~ 228 (475)
...|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.094 Score=47.68 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 183 (475)
+|..+.....+.|+.+-|..+++ .+|+..- =+..+.+.|+.+.|
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~---qVplLL~m~e~e~A 45 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRASK---QVPLLLKMGEDELA 45 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChHH---HHHHHhcCCchHHH
Confidence 45666777777888888877664 2344432 23344555665555
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.39 E-value=0.017 Score=45.69 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=39.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
-+...|++++|.++|+.+..... -+..-|-.|-.++-..|++++|+..|........ .+...+-.+..++...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCH
Confidence 33444555555555554443321 1223333333344444555555555555444431 2344444455555555555
Q ss_pred HHHHHHHHHHHH
Q 011919 430 VEAAKLARFMLK 441 (475)
Q Consensus 430 ~~A~~~~~~m~~ 441 (475)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.0012 Score=44.17 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+...|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|...|+++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345667777777777777777765 2366777777777777777777777777776654
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.055 Score=45.96 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHhHH
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR--IWLQGPYVDKIVEHLKKSGDEELI 467 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 467 (475)
...|.+.|.+..|..-++.+++.= .+........++.++.+.|..+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555555555555555555542 011112234455555555555433
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.024 Score=49.54 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=86.1
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 406 (475)
+.-+..+. -|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... ....++..+++++.+..
T Consensus 146 e~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 33344443 267889999999999999999999999988742 23455555555554433 35678889999999875
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
+.|+.+...|...+...|++.+|...|+.|++.. +++..
T Consensus 224 ---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~~ 262 (287)
T COG4235 224 ---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PADDP 262 (287)
T ss_pred ---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCCCc
Confidence 3478888889999999999999999999999987 44443
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.19 Score=49.01 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=118.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.|+.+...+.....|++|.+.+..-.. ....+.++.+..++++.+.+-+.+ +-+....-.+..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHH
Confidence 444455555555555555555443221 012334444444444433333322 334555666777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------HH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--------------ST 311 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------------~~ 311 (475)
+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-+...- |...|. .-
T Consensus 864 svGMC~qAV~a~Lr~s~------pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSL------PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hhchHHHHHHHHHhccC------cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHH
Confidence 77887777776654332 22 234556666777777766554321 222221 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh----hhHHHH-HHHH----------HhcCCHHHHHHHHHHHHHC--
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAG----GSVSSG----GCYSSL-VVEL----------VRTKRLKEAEKLFSKMLAS-- 370 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-i~~~----------~~~g~~~~a~~~~~~m~~~-- 370 (475)
-|..+.+.|..-+|-+++.+|.+. +.++-. ....++ +.-+ -+.|..++|..+++.-.-.
T Consensus 929 aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~ 1008 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQ 1008 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhH
Confidence 234556666666666777666543 222210 011111 1111 1234455555444332110
Q ss_pred -----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 -----GVKPDGLAC--SVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 -----~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+..-....| ..|.+--...|.++.|++.--.+.+. .+.| ....|+.+..+-|....+.-.-+.|-++...
T Consensus 1009 ~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp--P~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1009 SRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP--PAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 011112223 33333344557777776655444443 3343 4667777776666666665555666555554
Q ss_pred C
Q 011919 443 R 443 (475)
Q Consensus 443 ~ 443 (475)
.
T Consensus 1087 e 1087 (1189)
T KOG2041|consen 1087 E 1087 (1189)
T ss_pred h
Confidence 4
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.084 Score=44.80 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
...-.....+...|++++|.+.|+.+.....+.+--....-.++.++.+.|++++|...+++..+.-..-...-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 33444556677888899999999888876433233344556677788888888888888888776522111222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
+.+......... ....+... -...+..++.-|=......+|.+.+..+.+. . ...--.+..-|.+.|.
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHccc
Confidence 332211111111 00111100 1234666666666666666666655555421 0 0111224566889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..|..-++.+.+.-...+......-.++.+|.+.|..+.|..
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999753322234566788899999998885543
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.027 Score=54.92 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++.....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555544455556666666666666654 3556666666666666666666666666666543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.061 Score=45.89 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-----
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL----- 240 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----- 240 (475)
+-+.++..+...|.+.-..+++.+.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666666777777777777776554556666667777777777777777777766654333333333332
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...|.-++++..|...++++...+ +.+...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234555667777777777766643 344444444444444456677777777777664
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.037 Score=42.04 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555555443322 12333444455555555555555555544
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.15 Score=46.48 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.+.-|.-+...|+...|.++-.+. -.|+...|..-+.+|+..+++++-.++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555566677788888877776555 246788888899999999999887765432 12346788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..+... .+ +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k------~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK------IP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh------CC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998888877766 11 25566778888988888776433
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.014 Score=51.39 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+.+.....+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444444556666666666666654 3332 3444555566666666666666666665432212233444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+...|++++|.+++++.++.-
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555666677777777776666553
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.02 Score=55.81 Aligned_cols=138 Identities=11% Similarity=-0.025 Sum_probs=83.2
Q ss_pred CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhc--------CChHHHHHHHHHHH
Q 011919 196 YPDIITYVSMIKGFCNA-----GRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRL--------GSMERALELLGEME 261 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 261 (475)
+.+...|..++++.... ++.+.|..+|++..+.. |+ ...|..+..+|... +++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56667777776664332 22557777777777653 33 33444333333221 12334444444433
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
... ..+.+...|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+..
T Consensus 412 al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 310 123345666666666666788888888888877754 57777888888888888888888888887765543
No 191
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.27 Score=48.40 Aligned_cols=325 Identities=15% Similarity=0.072 Sum_probs=174.0
Q ss_pred HhcCCccCHHhHHH-----HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHhccC
Q 011919 121 KEEGCVVSVKMMKV-----IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM--IAADELMKGMGLI 193 (475)
Q Consensus 121 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~ 193 (475)
..-|++.+..-|.. +|+-+...+.+..|.++-+.+...-..- ...|.....-+++..+. +++.+..++=...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34577777777765 4667777888999999988876522111 45666777777766422 2333333322222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----
Q 011919 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA----ANLVAYSALLDGICRLGSMERALELLGEMEKEGG---- 265 (475)
Q Consensus 194 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---- 265 (475)
.. -+...|..+.+-....|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+-.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 12 34455666676667889999888887642222110 1122234455556666777766666655554210
Q ss_pred -----CCCCcHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHH----HcCCCCCHHHHHHHHHHHHhcCCHHH--
Q 011919 266 -----DCSPNVVTYTSVIQI--------FCGKGMMKEALGIL--DRME----ALGCAPNRVTISTLIKGFCVEGNLDE-- 324 (475)
Q Consensus 266 -----~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~--~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~-- 324 (475)
..+.....|.-+++- +.+.++-.++..-| +... ..|..|+. .....++.+.....-
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 001111111111110 00111111111111 1100 01222222 223334444333111
Q ss_pred --------HHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 325 --------AYQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 325 --------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
-+++.+.+.. .+..-..-+.+--+..+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1122222221 1222233345566667778888899988888775 67888888888889998888876
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+++-+..+. +.-|...+.+|.+.|+.+||.+++-+.- +.+ ....+|.+.|++.+|.++.
T Consensus 735 ekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 735 EKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 655433321 2447778888999999999998876541 111 4456667777776665543
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0022 Score=43.39 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|.++|+.+.+.. +.+..++..+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566666666666666653 2255566666666666666666666666666554
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.15 E-value=0.028 Score=44.82 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
....++..+...|++++|..+.+.+.... |.+...|..++.+|...|+..+|.+.|+++.. .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556667778888888888888888865 34778888889999999999998888877753 48888877655
Q ss_pred H
Q 011919 453 K 453 (475)
Q Consensus 453 ~ 453 (475)
.
T Consensus 141 l 141 (146)
T PF03704_consen 141 L 141 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0016 Score=44.11 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.|++++|+++|+.+..... -+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444321 1334444444444444444444444444444
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.0039 Score=42.25 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKK 442 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 442 (475)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4556666666777777777777777777754 235667777777777777 577777777776654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0061 Score=52.92 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
-..+.+++++|++.|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4556677788888888777754 3466667777777888888777777777666543 3345567777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~ 238 (475)
|++.|++.++. .|+-.+|.
T Consensus 168 A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHH
Confidence 77777776654 56655554
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.014 Score=51.36 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|...+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.....+-+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444455666666666666665421110 2345556666666666666666666666532111222333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666665543
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.99 E-value=0.0037 Score=41.78 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 1133333444444444444444444444443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.016 Score=52.48 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVA----GGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA----SG-VKPDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~ 377 (475)
.|..|-+.|.-.|+++.|+...+.-+. -|-. .....+..|..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556666888888777655432 1211 1235677788888888888888888876542 22 122344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+.-+|-.+|.-..++++|+.++.+-.. .+-. .-....+..|..+|...|..+.|+.+.+.-+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555667777777788888877665332 1100 014566778888888888888888877665543
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.96 E-value=0.28 Score=44.56 Aligned_cols=283 Identities=13% Similarity=0.056 Sum_probs=174.0
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL--FCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLED 217 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 217 (475)
.|+-..|.++-.+..+. +..|..-.-.++.+ -.-.|+++.|.+-|+.|.. .|.... ...|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 56666666665544321 22344444455544 3347899999999999975 222221 2233333446788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH--HHHHHHHHh---cCCHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY--TSVIQIFCG---KGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---~g~~~~a~~ 292 (475)
|.++-++.-... +.-...+...+...|..|+|+.|+++++.-.+. .-+.+++.-- ..|+.+-.. .-+...|.+
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 888888776653 224577888899999999999999999876653 2233443321 223322111 224455555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011919 293 ILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-S 370 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 370 (475)
.-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+....|+.. .+-.+.+.|+ .+..-++...+ .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 4444333 345532 22334567889999999999999999887766432 2222344554 34444444332 1
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 011919 371 GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 442 (475)
.++|| ..+...+..+-...|++..|+.--+...+.. |....|-.|.+.-. ..|+-.++...+-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~----pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA----PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33554 4566667778888999998887777776642 35667777776654 458999998888887754
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.15 Score=41.26 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=54.6
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCChhhHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVSM 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l 205 (475)
|++.---.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+... .-+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 343333344445555555555555555544332333444444444555555555555555554443210 0112223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.+.+...|..+.|+..|+..... -|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 44445555555555555554443 233333222333344444444433
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.18 Score=46.48 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCG---KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...++-.|-...+++...++++.+..... .+......-....-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 334444566678888888888888888876310 011122222233445555 7788888888877655555667777
Q ss_pred HHHHHHHHH
Q 011919 309 ISTLIKGFC 317 (475)
Q Consensus 309 ~~~li~~~~ 317 (475)
|..+.+.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 776665543
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.87 E-value=0.18 Score=40.84 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSL 347 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 347 (475)
|++..--.+..++...|+..+|...|++...--..-|....-.+.++....++...|...++++.+....- +....-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33333334444444444444444444444332222333344444444444444444444444444322100 11122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~ 369 (475)
...|...|++.+|+..|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554443
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.26 Score=42.26 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
+.++..+.-.|.+.-..+++.+..+...+.++.....|.+.-.+.||.+.|...|+...+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444555555555555444344444455555555555555555555554443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.81 E-value=0.0094 Score=40.33 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 298 (475)
.+|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444555554444444432 233444444444444444 3444444444433
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.012 Score=40.43 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|.+.+++++|.++++.+...+ |.+...|.....++.+.|++++|.+.++..++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45667778888888888877764 2366777777777788888888888888877665
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.11 Score=45.47 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHH
Q 011919 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
+-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... +..++..+|+++...+ +-|+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccHH
Confidence 3455555555555555555555555555555532 224444444444433322 2445555555555532 23444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+...+...+...|++.+|...|+.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4444555555555555555555555554
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.031 Score=42.87 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=38.3
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
...|+..+..+++.+|+..|++..|+++++...+. .+++-+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 35677777888888888888888888888777776 446666777777776443
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.68 E-value=0.018 Score=52.19 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCc
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKML----ASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVD 412 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 412 (475)
.+|..|...|.-.|+++.|+..-+.-+ +.|-+ .....+..|-.++.-.|+++.|.+.|+... +.|-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHH
Confidence 457777777778899999987654432 22322 223567778888888999999999888654 33432 224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+...|...|.-...+++|+.++.+-+.. ..--....+.++..++...|..+.|..++.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455566788888888999999887665432 112345678899999999999999877653
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.019 Score=45.82 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44456666667777777777777777643 4566677777777777777777777776653 3467776654
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.52 E-value=0.23 Score=37.64 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
....+..+...|+-+.-.+++.++.+.+ ++++...-.+..||.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555554422 45555555555566666666666666555555553
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.16 Score=48.45 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.+.+...-....+..+ ....+.+++.+...|.++.|+++...-. .-.....+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHH
Confidence 444454444443222222222 4446677777777777777777654321 12556667777777776
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+.+... +...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 655442 556777777777777777777777776643 4556666667777777666666666554
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
-++....++.-.|+.++..+++.+.
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1334444445556666666665543
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.44 E-value=0.57 Score=43.26 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHh---cCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
.+...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333344556777777777888777776531 11122222233445555 677777777777744444466777776
Q ss_pred HHHHHH
Q 011919 204 SMIKGF 209 (475)
Q Consensus 204 ~li~~~ 209 (475)
.+.+.|
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 666654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.012 Score=40.98 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+++.+...|...|++++|+..+++..+. |-..+.-..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555566666666666666655532 111000145566667777777777777777766553
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.39 E-value=0.58 Score=45.43 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
-+-+...+.-|-++|..|-+. ..+++.....+++++|..+-+..
T Consensus 756 ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 333444555555565555431 23445555666666666655544
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.36 E-value=0.081 Score=40.61 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
...|+..+..+++.+|+..|++..|.++.+.+.+.-..| .+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Confidence 345555555555555555556666655555555442222 234555555543
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=0.88 Score=42.32 Aligned_cols=122 Identities=21% Similarity=0.189 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh-HHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLL 420 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~li 420 (475)
+|.+.+....+..-++.|..+|.+..+.| +.++...+++++.-++ .|+..-|.++|+.-..+- +|... -+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f----~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF----PDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC----CCchHHHHHHH
Confidence 45566666667777888888888888887 5677778888887654 467777878877655442 13333 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHhHHhhc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQ--GPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...++-+.|..+|+..+.+- ..+ ...|..++..-..-|+...|..+
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 66777888888888888665432 222 45777778777777777555443
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.27 Score=41.68 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhh
Q 011919 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (475)
.+++.--...|......+...++++++...+....+. ..-+...|. ....++.|.-+.+++.+. .--+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3455555677888888889999999998877765531 122222221 123356666666666652 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCcCHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR---HG--CAANLVAYSALL 241 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g--~~~~~~~~~~ll 241 (475)
|+.....|..+|.++.|-..+++.-+ ..+..++++|+++|++... .+ ...-...+..+-
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 66777788888888887777766532 1133455666666665432 11 011123344555
Q ss_pred HHHHhcCChHHHHHHHH
Q 011919 242 DGICRLGSMERALELLG 258 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~ 258 (475)
+.+.+..++++|-..+.
T Consensus 158 r~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFL 174 (308)
T ss_pred hHhhhhHHhhHHHHHHH
Confidence 56666666666655443
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.041 Score=37.65 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|.+.+++++|.++++.++..++. +...+.....++.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444322 333344444444445555555555544443
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.19 E-value=2.1 Score=45.00 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL--ACSVMIRELCLGGQV 392 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~ 392 (475)
.+.....+++|.-.|+..-+ ...-+.+|..+|++++|+.+..++... -|.. +-..|..-+...++.
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 33344555555555544321 223445555666666666666555311 1111 113344555556666
Q ss_pred HHHHHHHHHHHH
Q 011919 393 LEGFCLYEDIEK 404 (475)
Q Consensus 393 ~~a~~~~~~~~~ 404 (475)
-+|-++..+...
T Consensus 1016 ~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS 1027 (1265)
T ss_pred hhHHHHHHHHhc
Confidence 666555555444
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.08 E-value=0.52 Score=37.16 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. . .+..-...++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3445555555566666666666555542 44555556666555442 2222233321 0 1111233345555555
Q ss_pred CCHHHHHHHHHHH
Q 011919 355 KRLKEAEKLFSKM 367 (475)
Q Consensus 355 g~~~~a~~~~~~m 367 (475)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.05 E-value=0.26 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
...|..|.+...+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.03 E-value=0.47 Score=46.03 Aligned_cols=81 Identities=17% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
...+...+.+...+.-|.++|.+|-+ ...+++.....+++++|..+-+...+. .| .+|-....-+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~----dVy~pyaqwL 814 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KD----DVYMPYAQWL 814 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cc----cccchHHHHh
Confidence 44444444455556666677766632 233555566677777777766655543 11 2355556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFM 439 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m 439 (475)
+...+++||.+.|.++
T Consensus 815 AE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhHHHHHHHHHHh
Confidence 7777777777766554
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.00 E-value=1.4 Score=41.22 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCcc-----------CHHh-HHHHHHHHHHcCCHHHHHHHHHhcccC----CCCCCHh
Q 011919 104 SRIKQNPSIIIDVVEAYKEE--GCVV-----------SVKM-MKVIFNLCEKARLANEAMWVLRKMPEF----DLRPDTI 165 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ 165 (475)
.-+.+.++.|.+.+.....+ +-.+ +... =+..++.+...|.+.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34567778888777665543 2121 1122 234556778889999999888887653 3447888
Q ss_pred hHHHHHHHHHh
Q 011919 166 IYNNVIRLFCE 176 (475)
Q Consensus 166 ~~~~ll~~~~~ 176 (475)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88886665544
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1 Score=39.64 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|++.+|..+|+....... -+...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44567778888888877765432 23455566777888888888888888877553212222222223444444444444
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
...+-.+.-.. +-|...-..+...|...|+.+.|.+.+-.+.++..+. -|...-..++..+...|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 44444444432 2256666667777777788888777776666653332 334455556665555553
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.2 Score=43.45 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.|+.-+..| +.|++..|...|...++. .|+ ...+-.|..++...|++++|..+|..+.+.....+.-..++-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355555433 556677777777777664 222 2344456666777777777777777766654333233456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|..+..+.|+.++|...|++.++.-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 6677777777777777777776653
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.038 Score=38.39 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPN-VVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+++.+...|...|++++|++.|++..+.. .+ -.|+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555555444310 00 0011 23344444445555555555555444
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.81 E-value=0.31 Score=47.25 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 379 (475)
..++....-.|+-+.+++.+.+..+.+-.-.. -.|+.++..++. ....+.|.+++..+.+. .|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34444555555666666555554432211111 123333333332 23455666666666644 5555444
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHH
Q 011919 380 SVMI-RELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD-KIVE 456 (475)
Q Consensus 380 ~~li-~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~~ 456 (475)
...- +.+...|++++|.+.++..... ..-+......+--+..++.-.++|++|.+.|..+.+.. .-+..+|. ...-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 2344556666666666654431 10111233444455555666666666666666666654 22333333 2233
Q ss_pred HHHhcCCH
Q 011919 457 HLKKSGDE 464 (475)
Q Consensus 457 ~~~~~g~~ 464 (475)
++...|+.
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 33444444
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.51 Score=37.73 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+. -|+..+-..-.++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655554433 334445555555555666666666555443321 22223333444555556666666
Q ss_pred HHHHHHHH
Q 011919 397 CLYEDIEK 404 (475)
Q Consensus 397 ~~~~~~~~ 404 (475)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555555
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=0.7 Score=44.87 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=106.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCH------HhHHHHHHHHH----HcCCHHHHHHHHHhcccCCCCCCHhh
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV------KMMKVIFNLCE----KARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (475)
+..+++.++-.||-+..++.+....+.+-.-.+ -.|..++..+. .....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 557788888888888888888877654322121 23333343322 245678899999998875 366555
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-H
Q 011919 167 YNNV-IRLFCEKGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL-L 241 (475)
Q Consensus 167 ~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l 241 (475)
|... .+.+...|++++|++.|++...... +.....+--+.-.+.-.++|++|...|..+.+..-- +..+|.-+ .
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 5433 4566678999999999997654211 123344555666778889999999999999886322 33333322 2
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 011919 242 DGICRLGSM-------ERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~-------~~a~~~~~~~~~ 262 (475)
.++...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334456766 889999988765
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.3 Score=42.30 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|+.-+..+ +.|++.+|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--+..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 444555555555555554211 112233445555666666666666665555543222222334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+..+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.76 E-value=0.074 Score=45.90 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=68.3
Q ss_pred ccCHHhHHHHHHHHHHc-----CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh
Q 011919 126 VVSVKMMKVIFNLCEKA-----RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 200 (475)
.-|-.+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44667777777766543 4566666777788888888888888888876544321 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
.+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111121 1234577888888888888888888888888888775
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.75 E-value=0.096 Score=45.24 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=45.2
Q ss_pred CcCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC----------------HHH
Q 011919 231 AANLVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM----------------MKE 289 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~~ 289 (475)
+-|..+|-..+..+... +.++-....++.|.+ .|+..|..+|+.|++.+-+..- -+=
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 34555666655555432 445555555556655 4556666666666665543221 122
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 320 (475)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444555555555555555555555544443
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.76 Score=36.19 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=18.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444444444444444444432 344444444444443
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=2.7 Score=41.90 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=182.6
Q ss_pred CCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCH--HHHHHHHH-hcccCCC
Q 011919 89 SYRHSSFMYNR-----ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA--NEAMWVLR-KMPEFDL 160 (475)
Q Consensus 89 ~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~-~~~~~~~ 160 (475)
|.+-+...|.. ++..+...+.+..|+++-..+...-.. ....|......+.+..+. +++++..+ ++... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 45555555554 345566677777887776655332111 134555555555555321 23333333 33221 2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011919 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG------- 229 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------- 229 (475)
....+|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.+...-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888899999999888643322211 122335566677778888887777777665531
Q ss_pred ----CCcCHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011919 230 ----CAANLVAYSALLD--------GICRLGSMERALELLGEME--KEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 230 ----~~~~~~~~~~ll~--------~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+.....|.-+++ .+.+.++-..+...|..-. .... +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111122222221 1112222222222221100 0000 00111112222333333322
Q ss_pred -HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 287 -MKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 287 -~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
..+-+.+.+.+. +.|......+.+--+.-+...|+-.+|.++-.+.. .||...|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222333333 22444445556666677778899999988876654 467788888899999999999988877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+. .+.-|...+.+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.++.-+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 6653 145677889999999999999888654332 22677889999999999876543
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=95.56 E-value=0.96 Score=36.21 Aligned_cols=91 Identities=14% Similarity=-0.028 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
.--+...|++++|..+|.-+.-.+. -+..-+..|..++-..+++++|...|......+.. |...+-....++...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhC
Confidence 3345688999999999999886543 24555666666777789999999999988776532 4444666788999999
Q ss_pred CHHHHHHHHHHHHHc
Q 011919 428 HSVEAAKLARFMLKK 442 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~ 442 (475)
+.+.|...|+..+.+
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998874
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.33 Score=44.45 Aligned_cols=97 Identities=18% Similarity=0.067 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.++..|..+|.+.+++.+|++...+.+..+ ++|....-.=-++|...|+++.|+..|+.+.+.. | .|..+-+.++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P-~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--P-SNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--C-CcHHHHHHHHH
Confidence 346778888888889999988888888764 4556665556678888889999999999888864 2 35566666666
Q ss_pred HHHhcCCHHHH-HHHHHHHHHc
Q 011919 422 GLCRKNHSVEA-AKLARFMLKK 442 (475)
Q Consensus 422 ~~~~~g~~~~A-~~~~~~m~~~ 442 (475)
+--+.....+. .++|..|...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 65555544443 6777777754
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.31 E-value=0.083 Score=49.33 Aligned_cols=98 Identities=16% Similarity=-0.027 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.+ + ..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n----~~ 145 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N----LK 145 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c----hh
Confidence 4567888999999999999999999998866 5664 358888889999999999999999999852 1 12
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 416 HSVLLL--GLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 416 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
|..+.. .+....+..+..++++++.+.|.+
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 332111 011223344666777777777743
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.59 Score=41.66 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=98.3
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH----HHHHHHHhcCCHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV----SMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~ 216 (475)
-.|.+.+|...++++.+. ++.|...++..=+++..+|+.+.-...++++...- .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 356677777778777753 45677778877788888888888888887776431 24443332 2333445678888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+|++.-++..+.+ +-|.....+....+--.|++.++.+++.+-... .... .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777664 346777777788888888888888877655432 1000 01112223333445567888888888
Q ss_pred HHH
Q 011919 295 DRM 297 (475)
Q Consensus 295 ~~m 297 (475)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.26 E-value=0.55 Score=44.10 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=49.6
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLI 193 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 193 (475)
+.+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777778888888888888888888877653 443 34777888888888888888888887753
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.97 E-value=0.084 Score=31.83 Aligned_cols=38 Identities=18% Similarity=-0.043 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+|..+...|.+.|++++|.++++++++.. |.++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 45566666666777777777777766665 444444443
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.95 E-value=1.2 Score=33.94 Aligned_cols=136 Identities=12% Similarity=0.191 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---HHHHHHHHHhcCCH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT---YTSVIQIFCGKGMM 287 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 287 (475)
-.|..++..++..+.... .+..-+|.++.-....-+-+...++++.+-+- -|... ...++..|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-----FDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-----FDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-----S-GGG-S-THHHHHHHHHTT--
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCchhhcchHHHHHHHHHhcc-
Confidence 356677777777776664 25555666665555555666666666665442 12221 1223333333332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
+...+...+......|+-|.-.+++.++.+ .-.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 233344555666677777777777777664 22345566666777777777777777777777
Q ss_pred HHCCCC
Q 011919 368 LASGVK 373 (475)
Q Consensus 368 ~~~~~~ 373 (475)
-+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776653
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.82 E-value=1.7 Score=45.49 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
|.+....+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|+.+..++..... .-..+-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d---e~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD---ELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH---HHHHHHHHHHHHH
Confidence 44444455566777777766665421 22345677777888888777766654210 0111225566667
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFML 440 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~ 440 (475)
...+++-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 77788888877776665
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=2.6 Score=37.15 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777787777777765443 2444566777778888888888887776432111111221222333344444444
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCH
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
...+-..+... +.|...--.+...+...|+.++|.+.+-.++++.. .-|...-..+++.|.-.|..
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 44444444442 23666666777777788888888877666665432 34455566667777666643
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.79 E-value=3 Score=37.64 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHCC
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCN--AGR----LEDACGLFKVMKRHG 229 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~g 229 (475)
+.+.+++.|.+.|..-+..+|-+..-.... ..+ ...|..+|+.|++..
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 344455555555555555444332222211 111 345666666666653
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.74 E-value=4 Score=38.87 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
+..++.+.|+.++|.+.+++|.+.... ........|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444445555555555555433211 12223444555555555555555555544
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.70 E-value=2.6 Score=36.46 Aligned_cols=66 Identities=17% Similarity=0.013 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC--VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 158 (475)
|-...|+..+..+ ..|+++.|.+.|+.+...-. +-...+.-.++-++-+.++++.|+..+++....
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3345566555444 34777777777777664321 122334444555666777777777777766554
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=1.6 Score=43.91 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH----HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
..-+..+....-++.|+.+... .+ .+..+...+.. .+.+.|++++|.+.|-+.... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3445555555666666555432 22 23333333333 445677788887777665432 112 235555
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|........-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+.-. .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 6666666677777777777774 455555677788888888777666655443 2211 11133456666666667777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
.-+-..... .......+ +-..+++++|+++++.+.-...-+....|...+- ...+++-..++-+..
T Consensus 483 ~~LA~k~~~-------he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 483 ELLATKFKK-------HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHhcc-------CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 665554432 22233333 3456778888888877643222223333332221 234555555555544
Q ss_pred hCCCCCChhhHHHHH-----HHHHhcCCHHHHHHHHHHHHHC
Q 011919 334 AGGSVSSGGCYSSLV-----VELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 334 ~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
.....++.......+ ....-.++++....+++.|.+.
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 433222222222111 1223345677777777767653
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.51 E-value=3.4 Score=37.06 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~ 440 (475)
.+.+.+++++|.++|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3457788888888777544
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.48 E-value=2.9 Score=36.14 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
.+-|.+.|.+..|..-+++|.+.-...+.....+-.+..+|...|-.++|.+.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 3445666666666666666666522211233445556666666676666666543
No 251
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.43 E-value=4 Score=37.51 Aligned_cols=283 Identities=11% Similarity=0.021 Sum_probs=181.7
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhh--HHHHHHHHHhcCChh
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMI 181 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~ 181 (475)
-.|+-..+.++-.+..+ -+.-|.+-...++. +..-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 35677777776655432 12445555555554 344579999999999999872 32221 233333445789999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHH--HHHHHHHH---hcCChHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAY--SALLDGIC---RLGSMERALE 255 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~--~~ll~~~~---~~g~~~~a~~ 255 (475)
.|..+-+..-..- +--...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 9998888775432 3345678899999999999999999999766543 33443221 22222211 1245667777
Q ss_pred HHHHHHhcCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 256 LLGEMEKEGGDCSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
.-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+- +..-++...+
T Consensus 251 ~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 251 DALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHH
Confidence 76666664 344332 2234567899999999999999999986666542 22334455553 3333333222
Q ss_pred C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 011919 335 G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 335 ~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 405 (475)
. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.- ...|+-.+++..+.+..+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1223 3455666777778889998888777766643 78888887777644 4559999999988888775
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.41 E-value=1.9 Score=33.68 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.|++++|.+.|+.+...- -+-....--.++.+|.+.+++++|...++..++..+.....-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34455555555555554431 011223334455555555555555555555555443322223444444433
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=1.4 Score=44.41 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM----IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...-+..+++...++.|..+...-. .|..+...+ .+-+.+.|++++|...|-+-... ++|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445555666666666666544322 223333222 23334566666666555544332 1221 2344
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
-|....+..+-..+++.+.+.|. .+...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl---a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL---ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc---ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 44555555555566666666442 444455566666666666666655555443 2211 11123344555555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|..+-..... ...... ..+-..+++++|++.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 555554444322 111122 2233456677777766655
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.30 E-value=2 Score=33.55 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...+.|++++|.+.|+.+..+-..-+-...+--.++.+|.+.+++++|...+++..+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666666665542111122333444555666666666666666666554
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.82 Score=41.97 Aligned_cols=85 Identities=8% Similarity=-0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.+..|..++.+.+++..|++..+...+.+ +.|+...---..++...|+++.|+..|+++++.. |-|...-+.++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 46667778899999999999999999976 3477777788899999999999999999999987 5666666666666
Q ss_pred HHhcCCHhH
Q 011919 458 LKKSGDEEL 466 (475)
Q Consensus 458 ~~~~g~~~~ 466 (475)
..+..+...
T Consensus 335 ~~k~~~~~~ 343 (397)
T KOG0543|consen 335 KQKIREYEE 343 (397)
T ss_pred HHHHHHHHH
Confidence 555554443
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.09 E-value=2.6 Score=34.07 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=12.0
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 189 GMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
.+.+.+++|+...+..+++.+.+.|.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444444
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.95 E-value=2.8 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
+++.+.+.+++|+...+..+++.+.+.|++.....
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444445555555555555555555555444333
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.73 E-value=2.4 Score=32.35 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=47.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhc
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT---ISTLIKGFCVE 319 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~ 319 (475)
++...|+++.|++.|.+.... +|.....||.-..++.-.|+.++|++=+++..+..-.-+... |..--..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 455566666666666666652 244555666666666666666666666655554321112211 22222234445
Q ss_pred CCHHHHHHHHHHHHhCC
Q 011919 320 GNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~ 336 (475)
|+.+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 55555555555554444
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.73 E-value=0.77 Score=40.50 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSA 239 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 239 (475)
+..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3444445555555555555555555443 34555555555555555555555555554443 344444444433
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.62 E-value=2 Score=32.73 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555444431 22444555555555555555555555554444
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.56 E-value=0.99 Score=39.87 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455555555555555555555555443 22445555555555555555555555555443
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=4.3 Score=34.77 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
|...|-.+....++..|.+.++.--+. ++..+.+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 333444455556666676666654332 111123556666666665 56666666544
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=3.3 Score=37.20 Aligned_cols=157 Identities=8% Similarity=-0.049 Sum_probs=115.6
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
-..|++.+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... +++-..++...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888889988874 4778888888889999999999999999988764 23333444556667778899999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~ 328 (475)
+|++.-++..+.+ +-|..+-.+....+-..|+..++.+...+-... +.-.-.+.|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998854 467777778888888999999999887664422 1111122333344455667899999999
Q ss_pred HHHHHhC
Q 011919 329 IDKVVAG 335 (475)
Q Consensus 329 ~~~~~~~ 335 (475)
|+.-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9875443
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.33 E-value=2.1 Score=38.79 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH-Hh---ccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc---CHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMK-GM---GLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAA---NLVA 236 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~-~~---~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~ 236 (475)
+|..+..+.++.|.+++++..-- +| .+.. -..--..|..+.+++-+..++.+++.+-+.-... |..| .-..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 45555566666666665544321 11 1100 0011233444555555555566666555544332 2111 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGG---DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPNRVTI 309 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~ 309 (475)
..++..+....+.++++++.|+...+-.. +-.....+|-.+...|.+..|+++|.-+.....+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34455666666677777777776654211 0112234566677777777777777666544332 2221111112
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 310 S-----TLIKGFCVEGNLDEAYQLIDKVVA----GGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 310 ~-----~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
. .+.-++...|.+.+|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 233355666777766666665543 33222 12344556667777788777777666543
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.25 E-value=1.7 Score=35.85 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
..+..+...|++.|+.+.|.+.|.++.+...+...-...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666667777777777777777665322222223344555666666666666666655544
No 266
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.24 E-value=5.6 Score=35.16 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHc-C-CHHHHHHHHHhcc-cCCCCCCHhhHHHHHH
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKA-R-LANEAMWVLRKMP-EFDLRPDTIIYNNVIR 172 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~ 172 (475)
|..++. +.....+|+.+++.... ..+.-|..+...+++..... + ....-.++.+-+. +.+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555442 33445666777764322 34556777777777766552 1 2222223333333 2234577778888899
Q ss_pred HHHhcCChhHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHh
Q 011919 173 LFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLFKV-----MKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.+++.+++.+-.++++..... +..-|...|..+|+.....||..-..++.++ +++.|+..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999998877664 5566888899999999999998777766653 4455677676666665555443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.93 E-value=0.41 Score=28.77 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555553
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.91 E-value=11 Score=37.67 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=103.7
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHhcC-
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMI--KG-FCNAGRLEDACGLFKVMKR-------HGCAANLVAYSALLDGICRLG- 248 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 248 (475)
...|.++++...+.|. ........++ .+ +....|.+.|...|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777766552 1222121222 22 4466788888888888766 44 3335556666666643
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 011919 249 ----SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VE 319 (475)
Q Consensus 249 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 319 (475)
+.+.|+.++......| .|+....-..+.-... ..+...|.++|...-+.|..+ .+-.+..+|. -.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcC
Confidence 6677888888888855 3554433322222222 246788999998888887432 2222222221 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
.+.+.|..++.+..+.|....... ...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 467888888888888883322221 122222333 677777766666666553
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.88 E-value=5.3 Score=33.93 Aligned_cols=167 Identities=19% Similarity=0.130 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+......+...+++..+...+...... ........+......+...+++..+.+.+........ .+........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP---DPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC---CcchHHHHHH
Confidence 34444444445555555555554444431 1122334444444444555555555555555544210 0111111111
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011919 279 Q-IFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 279 ~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 44455555555555555433110 01112222222223344445555555544444322211233444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 011919 356 RLKEAEKLFSKMLA 369 (475)
Q Consensus 356 ~~~~a~~~~~~m~~ 369 (475)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 55555555554443
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.61 E-value=5.8 Score=33.69 Aligned_cols=227 Identities=21% Similarity=0.120 Sum_probs=159.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 212 AGRLEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
.+....+...+......... .....+......+...+++..+...+...... .........+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 35556666666666554322 13577788888899999999999999888751 01245566777777888888899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 291 LGILDRMEALGCAPNRVTISTLIK-GFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
...+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999888754333 122222333 78899999999999999866332 122334444445567788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86532113567777778888889999999999999886421 23445555555557778999999988888765
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.55 E-value=0.31 Score=27.73 Aligned_cols=26 Identities=12% Similarity=-0.130 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998855
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.52 E-value=3.1 Score=34.29 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCH----HH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANL----VA 236 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~----~~ 236 (475)
.+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.... |...+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555555555555555555555544322221 233444555555555655555555544332 111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 237 YSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
|..+ .+...+++..|-+.|-+...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCc
Confidence 1111 12335677777776655543
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.48 E-value=4.8 Score=32.49 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=21.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.+..++|+.-|..+.+.|.+--|.. ..-.+.......|+...|...|++.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34444555555555544433222211 111122233444455555555544443
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.03 E-value=8 Score=34.25 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI--KQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
...|++.|...--......++.....+++.... ........++++.+.. .+..++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 355667766432223456778878777776654 2345555666666654 3457888899999999999999999999
Q ss_pred HHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH-----hccCCCCCChhhHHHHHHHHHh
Q 011919 151 VLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKG-----MGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~~ 211 (475)
+++..... +...|...|...|......|+..-..++.++ +++.++..+...-..+-..+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99987665 6677899999999999999999888888775 3566777777766666555543
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.91 E-value=9.8 Score=34.73 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
.|..|-..|.+..|+++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34445555555555555544433
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.81 E-value=11 Score=35.07 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=92.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----AANLVAYSALLDGIC 245 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~ 245 (475)
...+.-+.|+++...++....... .++...+.++... +.++.+++...++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355667788888866666655432 2344445544433 77888888888777665311 112334444444445
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHH---HHHHH--cCCCCCHHHHHHHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-----KGMMKEALGIL---DRMEA--LGCAPNRVTISTLIKG 315 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~---~~m~~--~~~~p~~~~~~~li~~ 315 (475)
+...+.+..++.+-..... .+......++..... ..+++.-..++ ..+.. ........++..+...
T Consensus 80 ~lq~L~Elee~~~~~~~~~----~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS----QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 5544555544444432210 112222223222211 11221111111 11111 0012233455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+.+.|.++.|...+..+...+... +......-+..+-..|+..+|+..++...+
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677777766666665543111 222333344555566666666666666655
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=91.80 E-value=12 Score=35.58 Aligned_cols=163 Identities=12% Similarity=-0.035 Sum_probs=93.7
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 011919 272 VTY--TSVIQIFCGKG-----MMKEALGILDRME-ALGCAPN-RVTISTLIKGFCVE---------GNLDEAYQLIDKVV 333 (475)
Q Consensus 272 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~-~~~~~p~-~~~~~~li~~~~~~---------g~~~~a~~~~~~~~ 333 (475)
..| ..++.+..... ..+.|+.+|.+.. ...+.|+ ...|..+..++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555544322 3567788888877 2234444 33444444333221 23445667777777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.+.. |..+...+..++...++++.|..+|++.... .||. .+|...-..+.-.|+.++|.+.+++..+..... ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~-~~ 407 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR-RK 407 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh-hH
Confidence 76643 5666666666667777888888888888755 5553 334333344566888888888888877653211 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
..+....++.|+ ....++|++++.+-
T Consensus 408 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 408 AVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 223333344554 44567777776543
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.66 E-value=10 Score=34.33 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC-
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCV--E----GNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKR- 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~- 356 (475)
+++.+.+++.|.+.|..-+..+|-+....... . ....+|..+|+.|++..+.. +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888888877776554333332 2 23557888999998875433 22344444433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 357 ---LKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGG--QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 357 ---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.+.++.+|+.+.+.|+..+. .....++..+-... .+.++.++++.+.+.|++. ....|..+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki--k~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI--KYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc--ccccccHHHH
Confidence 35567788888887776543 23333333222211 2457888888999888765 4444655543
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.63 E-value=13 Score=35.61 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHH
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVE 350 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~ 350 (475)
+-..+..++-+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-+... +.-..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345666777899999999999999764322 2344677899999999999999999998754322 2223556665544
Q ss_pred HHhcC
Q 011919 351 LVRTK 355 (475)
Q Consensus 351 ~~~~g 355 (475)
+...+
T Consensus 341 aRav~ 345 (539)
T PF04184_consen 341 ARAVG 345 (539)
T ss_pred HHhhc
Confidence 44333
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.57 E-value=9.9 Score=34.10 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=10.9
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011919 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
...+.+.++++.|.+..+
T Consensus 253 ~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHhhcCHHHHHHHHH
Confidence 334566677777766554
No 281
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=12 Score=34.91 Aligned_cols=163 Identities=10% Similarity=-0.025 Sum_probs=97.6
Q ss_pred hhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---
Q 011919 200 ITYVSMI-KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD--GICRLGSMERALELLGEMEKEGGDCSPNVVT--- 273 (475)
Q Consensus 200 ~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 273 (475)
.+|..+- .++.-.|+.++|.++--..++.. ....+..+++ ++.-.++.+.|...|++....+ |+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~ 241 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKS 241 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHh
Confidence 3444332 34556788888887777666653 2223333333 3444677888888888887743 43222
Q ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 274 ----------YTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 274 ----------~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
|..=..-..+.|++.+|.+.+.+.... +..|+...|.....+..+.|+.++|+.--+...+.+..-
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy- 320 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY- 320 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-
Confidence 111122345678888888888877643 344555666666667777888888887777776643211
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...|..-..++...+++++|.+-|++..+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333344555667788888887777654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.09 E-value=0.57 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.03 E-value=0.4 Score=26.92 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHH
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666666666666666666654
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.77 E-value=15 Score=34.72 Aligned_cols=137 Identities=9% Similarity=0.002 Sum_probs=78.5
Q ss_pred CCChHHHHHHHHHhhhCCCC---CCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCC
Q 011919 71 PSQSQMGIRFFIWAALQSSY---RHSSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARL 144 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~ 144 (475)
+++.+.+-.+|........- ....+.+. .++.++ -.++.+.....+....+.. | ...|-.+.. .+.+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhh
Confidence 44555555666555433221 11222222 233333 2366677666666665542 2 333444444 3456788
Q ss_pred HHHHHHHHHhcccC--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCCChhhHHHHH
Q 011919 145 ANEAMWVLRKMPEF--DLRP------------DTIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLYPDIITYVSMI 206 (475)
Q Consensus 145 ~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 206 (475)
++.|.+.+..-.+. +.++ |-..=+..+.++...|++.++..+++++... ...-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89998887765543 2222 2222366778899999999999998887553 3346788888865
Q ss_pred HHHHh
Q 011919 207 KGFCN 211 (475)
Q Consensus 207 ~~~~~ 211 (475)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55543
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=4.6 Score=35.95 Aligned_cols=102 Identities=10% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011919 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
......+...++..-.....++.+...+-++.... ..++. +-...++.+. .-++++++.++..=+..|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444455555555555566666666665554321 11111 1122233222 2355667776666666777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++.+|..+.+.+++.+|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777666666554
No 286
>PRK11906 transcriptional regulator; Provisional
Probab=90.58 E-value=16 Score=34.79 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=64.6
Q ss_pred HHHHHHHHhcC-----ChhHHHHHHHHhcc-CCCCCC-hhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCC
Q 011919 168 NNVIRLFCEKG-----DMIAADELMKGMGL-IDLYPD-IITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g-----~~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~ 231 (475)
...+++..... ..+.|+.+|.+... ..+.|+ ...|..+..++. ...+..+|.++-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 45555544421 34567777877762 222343 233333222221 1223445555555555554 2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
-|......+..++.-.++++.|...|++....+ |-...+|......+.-.|+.++|.+.+++..+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 355555555555566666666666666666532 22233444444444556666666666666443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.46 E-value=0.36 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011919 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
|++.++.. |-++..|..+...+...|+.++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555 666667777777777777777665
No 288
>PRK09687 putative lyase; Provisional
Probab=90.43 E-value=13 Score=33.39 Aligned_cols=232 Identities=10% Similarity=0.009 Sum_probs=111.7
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHhccCCCCCChhhHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM----IAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
+.......+..+...|. .++...+..+.. .+|...-...+.++.+.|+. +++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444445555555553 333333333332 23444445555566666653 3455555554222 34544444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 204 SMIKGFCNAGRL-----EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 204 ~li~~~~~~~~~-----~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+.++...+.. ..+...+..... .++..+-...+.++.+.|+ +++...+-.+.+. ++..+-...+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~~A~ 180 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRNWAA 180 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHHHHH
Confidence 444444443321 122333333222 2345555556666666665 4455555555542 3334444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 279 QIFCGKG-MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
.++.+.+ +...+...+..+.. .++...-...+.++.+.|+. .|...+-...+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 4555432 23345555555443 23555555566666666663 44444444444332 133456666666664
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
+|...+..+.+. .||...-...+.+|
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 466666666643 34555555554444
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.31 E-value=4.3 Score=33.78 Aligned_cols=72 Identities=11% Similarity=-0.074 Sum_probs=31.2
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
+.|.+.|-++...+.--++.....|...| ...|.+++.+++-+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444222222222222222 244455555555544431 1234455555555555555555544
No 290
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.77 E-value=18 Score=34.15 Aligned_cols=146 Identities=12% Similarity=-0.013 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIR 384 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 384 (475)
..|...+++..+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+...|.++|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 446677788888888999999999999988 5678888999998776 47788899999876544 4555444 34556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
-+...++-+.|..+|+...++--. ..-...|..+|.--..-|+...+..+-+.|... .|...+...+..-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~-~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK-TQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH-hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 677889999999999965543110 112467999999988999999988887777654 34444444444333
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=4.4 Score=36.06 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
++++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
No 292
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.67 E-value=25 Score=35.67 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh---
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG--- 283 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 283 (475)
..+.-.|.+|.|.+.+-+ ..+...+.+++...+.-|.-.+-.+... ..+.....+ .|...-+..||..|++
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~-~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG-DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC-CCCCcCHHHHHHHHHHHHh
Confidence 444456777777776665 2222344555544444333222111111 222211110 0112456778888875
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 011919 284 KGMMKEALGILDRMEALG 301 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~ 301 (475)
..++.+|++++-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 467888888888776543
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.35 E-value=4.5 Score=29.03 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
+.-.+.+-++.+......|++....+.+++|.+.+++..|+.+|+-.+... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444566777778888889999999999999999999999999999776431 124456766654
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.24 E-value=5.9 Score=28.43 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
-++.+-++.+....+-|++....+.++||.+.+++..|.++++.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666666666666654
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=9.8 Score=37.19 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=89.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
.-+++++.|..++.... ....+.+.+.+.+.|..++|+++- +|.. .-.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHH
Confidence 34567776666544321 344455666677777777665542 1211 1122344667777777
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011919 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++..+.. +..-|..|.++....+++..|.+-|..... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7765542 456677777777788887777777765432 3455666666777666666666666654
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
. - |...-+|...|+++++.+++.+-
T Consensus 723 ~---~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K---N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c---c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 22333556677777777776543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.52 E-value=1.7 Score=24.04 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...+...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468888899999999999999999988764
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.47 E-value=1.5 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+++.+...|...|++++|.+++++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888899999999999998887753
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.37 E-value=25 Score=32.69 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
....+|..+...+.+.|.++.|...+..+...+... +......-+...-..|+.++|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754221 3344445566777889999999999988873
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.30 E-value=4 Score=29.58 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666666666666665554
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.13 E-value=12 Score=36.65 Aligned_cols=133 Identities=17% Similarity=0.097 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..-+.+.+.+.+.|-.++|+++- +|... -.....+.|+.+.|.++..+.. +..-|..|-+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 34456666677777777776542 12111 1233456788888877765543 4566788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHH
Confidence 88888888888888876544 556777777777777666666666655532 233345566788888
Q ss_pred HHHHHHHH
Q 011919 395 GFCLYEDI 402 (475)
Q Consensus 395 a~~~~~~~ 402 (475)
+.+++..-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 77666543
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.01 E-value=2.1 Score=23.50 Aligned_cols=30 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|..+...+.+.|++++|++.+++.++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 346667777777888888888887777654
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.20 E-value=16 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHH-HHHHHHHcCCHHHHHHHHHhccc
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
.++.+.+..++..++.. .|....... -...+.+.|++.+|..+|+.+.+
T Consensus 23 ~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34555555555555443 222222221 12244455556666666655544
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.19 E-value=0.7 Score=36.55 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=48.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011919 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
++..+...+.+......++.+...+...+....+.++..|++.+..++...+++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3444555566666666777776655555667777777777777666666666652222 222345555555566
Q ss_pred hhHHHHHHHHh
Q 011919 180 MIAADELMKGM 190 (475)
Q Consensus 180 ~~~a~~~~~~~ 190 (475)
++.|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555554
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.04 E-value=11 Score=27.41 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
+..+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+--. ....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~---~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN---KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT----TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC---hHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877765321 2225665543
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.88 E-value=1.8 Score=29.69 Aligned_cols=48 Identities=4% Similarity=-0.125 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
..++.++|+..|+...+.-..++.--.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776544433445666777777777777777665
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.81 E-value=17 Score=29.21 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=6.1
Q ss_pred hcCCHHHHHHHHHHH
Q 011919 211 NAGRLEDACGLFKVM 225 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m 225 (475)
..|++.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.58 E-value=11 Score=31.48 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=54.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhcCC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (475)
-+.+.|| +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+....- .+|+..+..|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455565 667777777777665545555555554444 667778887777766543222 5777788888888888888
Q ss_pred HHHHH
Q 011919 287 MKEAL 291 (475)
Q Consensus 287 ~~~a~ 291 (475)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87775
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.25 E-value=19 Score=29.31 Aligned_cols=141 Identities=9% Similarity=-0.017 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh-HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh-hHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-IYN 168 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 168 (475)
..+...|...+. +...+..+.|+.-|..+.+.|..--+.. .--......+.|+...|+..|+++-.....|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 356777776665 4566888999999999998775422221 1122336678899999999999987653333322 111
Q ss_pred HH--HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 169 NV--IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 169 ~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
.| .-.++.+|.++....-++.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 22467889999999999988776644455556677778889999999999999988754333
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.09 E-value=2.5 Score=24.52 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666655543
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.71 E-value=8.9 Score=32.34 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 223 (475)
.++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344444444444444444333322 2233333344444444444444443333
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.57 E-value=18 Score=28.55 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011919 343 CYSSLVVEL---VRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 343 ~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
+.+.||+.. ...++++++..++..|.-. .|+. .++...+ +...|++++|.++|+++.+.+.. ..|
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-----~p~ 79 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-----PPY 79 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-----chH
Confidence 344555443 3578999999999999854 5654 4444444 57889999999999999987532 125
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhH
Q 011919 417 SVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~ 451 (475)
..-+.++|-.-.-|-.. ..-++++..+-+++....
T Consensus 80 ~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 80 GKALLALCLNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 55555555433222233 344566666645554433
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.57 E-value=13 Score=32.78 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-----
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC----- 210 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 210 (475)
|.+++..+++.+++...-+..+.--+........-|-.|.+.|.+..+.++-.......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666655443332211112223333344445566666665555555443211122223444443332
Q ss_pred hcCCHHHHHHHH
Q 011919 211 NAGRLEDACGLF 222 (475)
Q Consensus 211 ~~~~~~~a~~~~ 222 (475)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 245555555444
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.37 E-value=2.9 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|..+..+|...|++++|++.|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44455555555555555555555543
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.91 E-value=19 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=27.4
Q ss_pred cCChhHHHHHHHHHHhcCC-ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 011919 107 KQNPSIIIDVVEAYKEEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 158 (475)
..+++.+..+++.|+-... .+...+|. ...+.+.|++.+|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666655321 11222222 23455667777777777776664
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.90 E-value=11 Score=31.92 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIRE 385 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 385 (475)
|.+.-++.+.+.+.+.+++...++-++..+. |...-..+++.||-.|++++|..-++-.-.. ...+....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567777888999999988887776543 5566777889999999999998766655432 123445667776654
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.49 E-value=3.4 Score=22.68 Aligned_cols=30 Identities=13% Similarity=-0.158 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...|...|++++|.+.|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888999999999998887653
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.45 E-value=45 Score=32.27 Aligned_cols=179 Identities=10% Similarity=0.057 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
+..-.-+++..++.+-++..+..+..+|...| -+--.|..++..|..++ -+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344456677777777777777777777654 24456666777777774 46777777777776542 4444444444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHh
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYP-----DIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~ 246 (475)
.|-+ ++.+.+..+|.+....=++. =...|.-+.... ..+.+..+.+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777665432211 112344333321 34566666666655542 333334455555566777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
..++++|++++..+.+.. ..|..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d---~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD---EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc---chhhhHHHHHHHHH
Confidence 777888888777777643 34555555555443
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.74 E-value=3.7 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
|..+...+...|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.61 E-value=27 Score=29.06 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=79.2
Q ss_pred HHHHHhhhCCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH--HHHHHHHcCCHHHHHHHH
Q 011919 79 RFFIWAALQSS----YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV--IFNLCEKARLANEAMWVL 152 (475)
Q Consensus 79 ~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~A~~~~ 152 (475)
-+|-|...+.. .......|..++..... +.+ .....++.+...+..-.-.++.. +...+...+++++|+..+
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34566544332 12234567777766643 333 44555555555431211122222 223567788888888888
Q ss_pred HhcccCCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 153 RKMPEFDLRPDTIIYN-----NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..... |.-..+. .|.+.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|+...+
T Consensus 113 ~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 113 KQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 876642 2223332 344566777888888888776654321 112223334567777777888777777776
Q ss_pred CC
Q 011919 228 HG 229 (475)
Q Consensus 228 ~g 229 (475)
.+
T Consensus 188 ~~ 189 (207)
T COG2976 188 SD 189 (207)
T ss_pred cc
Confidence 64
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.40 E-value=0.79 Score=36.26 Aligned_cols=84 Identities=6% Similarity=-0.051 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++ .. +..-...++..+.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS------SSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc------cccCHHHHHHHHHhc
Confidence 555666666777777777777765545556666777777777766666665555 11 111123455556666
Q ss_pred CCHHHHHHHHHHH
Q 011919 427 NHSVEAAKLARFM 439 (475)
Q Consensus 427 g~~~~A~~~~~~m 439 (475)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 6776666666554
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.38 E-value=27 Score=29.00 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACS-----VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
...+...|++++|..-++..... |....+. .|.+.....|.+++|+..++...+.+. .......-.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhH
Confidence 45677888888888888876643 2223333 344556778889999988888887654 23445566788
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 011919 423 LCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+...|+-++|..-|.+.+..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888999999999998888876
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.74 E-value=64 Score=32.86 Aligned_cols=399 Identities=13% Similarity=0.103 Sum_probs=191.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhc----CCccCHHhHHHH-HHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMY-----NRACEMSRIKQNPSIIIDVVEAYKEE----GCVVSVKMMKVI-FNLC 139 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~ 139 (475)
...+.+.|...+........- ++-..+ ..+++.+... ++..|...++...+. +..+-...|..+ +..+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~-~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKT-NPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 367778887776654322211 222211 1233444444 444488777776543 222334445444 3344
Q ss_pred HHcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHH--hcCChhHHHHHHHHhccCC---------CCCChhhHHHH
Q 011919 140 EKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLID---------LYPDIITYVSM 205 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l 205 (475)
...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++.... ..|...+|..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 44479999999998876531 2344455555555544 3455666777776652211 23456677777
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHH-------CC----------CC-------------cCHHH---------HHHHHH--
Q 011919 206 IKGFC--NAGRLEDACGLFKVMKR-------HG----------CA-------------ANLVA---------YSALLD-- 242 (475)
Q Consensus 206 i~~~~--~~~~~~~a~~~~~~m~~-------~g----------~~-------------~~~~~---------~~~ll~-- 242 (475)
+..++ ..|+++.+.+.++++.+ .. ++ +.... ..-++.
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l 309 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGL 309 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHH
Confidence 76554 56776666665554432 10 00 01111 111122
Q ss_pred HHHhcCChHHHHHHHHHHHhc--------CCCCCC------cHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHH
Q 011919 243 GICRLGSMERALELLGEMEKE--------GGDCSP------NVVTYTSVIQ---------IFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~--------~~~~~~------~~~~~~~li~---------~~~~~g~~~~a~~~~~~m~~ 299 (475)
.++..|..++|.+++++..+. .....- +...|...+. ..+-.+++..|...++.|.+
T Consensus 310 ~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~ 389 (608)
T PF10345_consen 310 HNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQ 389 (608)
T ss_pred HHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 122334444555555443321 000000 1112222222 22457889999999998886
Q ss_pred cCC-CCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHH--HHHHHh--cCCHHH
Q 011919 300 LGC-APN-----RVTISTLIK--GFCVEGNLDEAYQLID--------KVVAGGSVSSGGCYSSL--VVELVR--TKRLKE 359 (475)
Q Consensus 300 ~~~-~p~-----~~~~~~li~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~ 359 (475)
..- .|+ ...+...+. .+...|+++.|...|. .....+...+..++..+ +-.+.. ....++
T Consensus 390 ~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~ 469 (608)
T PF10345_consen 390 LCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSE 469 (608)
T ss_pred HHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhh
Confidence 421 111 122222222 3445699999999997 44445544444443332 111222 222233
Q ss_pred --HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhc
Q 011919 360 --AEKLFSKMLAS-GVKP--DGLACSVM-IRELCLGGQ--VLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 360 --a~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g~--~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+.++++.+... .-.| +..++..+ +.++..... ..++...+.+..+ .+... .-..+++.+...+. .
T Consensus 470 ~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~lm~~~lf-~ 547 (608)
T PF10345_consen 470 SELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLNLMGHRLF-E 547 (608)
T ss_pred hHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH-c
Confidence 66777766432 1122 23333333 333332221 2244433333222 11100 01122333333333 6
Q ss_pred CCHHHHHHHHHHHHHcCCCC---ChhhH-----HHHHHHHHhcCCHhHHhhccc
Q 011919 427 NHSVEAAKLARFMLKKRIWL---QGPYV-----DKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|+..+..+............ ....| ..+.+.+...|+.++|..+.+
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~ 601 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQ 601 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888766655544322122 33444 244455888899999987654
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.16 E-value=3.6 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555555554444
No 324
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.91 E-value=25 Score=27.67 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHhcCCccCHH--hHHHHHHHHHHcCCHHHHHHHHHhcccCCC-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhc
Q 011919 120 YKEEGCVVSVK--MMKVIFNLCEKARLANEAMWVLRKMPEFDL-----RPDTIIYNNVIRLFCEKGD-MIAADELMKGMG 191 (475)
Q Consensus 120 ~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 191 (475)
|.+.+..++.. ..|.++......+++...+.+++.+..... ..+...|+.++.+..+..- --.+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444432 344555555555666666666665522100 1233455566655544433 223455555555
Q ss_pred cCCCCCChhhHHHHHHHHHhc
Q 011919 192 LIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.+.+++..-|..+|.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555555555666666555444
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.73 E-value=11 Score=34.15 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
+-|.+.|++++|++.|..-+.... .+..++..-..+|.+..++..|+.-....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 567778888888888877665432 155666666777777777777766665554
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.45 E-value=42 Score=29.90 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHhccCCCCCC-----------------hhhHHHHHHHHHhcCCHHHHHH
Q 011919 159 DLRPDTIIYNNVIRLFCEK-GDMIAADELMKGMGLIDLYPD-----------------IITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+++-|+.-|-..++..-.. -.++++.+++...+. +.-|+ ..+++...+.|..+|.+.+|.+
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3556666666666554332 235566666555432 11111 1123445567888999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+...... +.+...+..++..+...||--.|.+-++.+.
T Consensus 301 l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 301 LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 998888764 5577888889999999998777776666554
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.94 E-value=65 Score=31.79 Aligned_cols=359 Identities=9% Similarity=0.001 Sum_probs=198.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHH-HHcCCHHHHHHHHHhcccC-CCC-CCHh
Q 011919 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC-EKARLANEAMWVLRKMPEF-DLR-PDTI 165 (475)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~-~~~-~~~~ 165 (475)
.|+.--..|......=.+.|..+.+.++|+...+ +++.++..|...+..+ ...|+.+.....|+..... |.. .+..
T Consensus 74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~ 152 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDP 152 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccH
Confidence 3433444556666777788899999999999877 6678888887777644 4567777888888877653 211 2455
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---hc------CCHHHHHHHHHHHHHC----CCCc
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC---NA------GRLEDACGLFKVMKRH----GCAA 232 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~------~~~~~a~~~~~~m~~~----g~~~ 232 (475)
.|...|.--...+++.....++++.++. | ..-|+....-|. .. ...+++.++-...... ...+
T Consensus 153 lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~ 228 (577)
T KOG1258|consen 153 LWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE 228 (577)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC
Confidence 6777887777888899999999988752 2 222222222221 11 2233333332222210 0000
Q ss_pred CHHHHHH-----------------HH--------HHHHhcCChHHHHHHHHHHHhcC-CC----CCCcHHHHHHHHHHHH
Q 011919 233 NLVAYSA-----------------LL--------DGICRLGSMERALELLGEMEKEG-GD----CSPNVVTYTSVIQIFC 282 (475)
Q Consensus 233 ~~~~~~~-----------------ll--------~~~~~~g~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~li~~~~ 282 (475)
....... ++ .++-..-...+..-.|+.-.++. .. .+++..+|...+.--.
T Consensus 229 ~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i 308 (577)
T KOG1258|consen 229 PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI 308 (577)
T ss_pred hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh
Confidence 1111111 11 11111112222222333322211 01 1235567888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHH
Q 011919 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV--SSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a 360 (475)
..|+.+.+.-+|++..-.- ..=...|-..+.-....|+.+-|..++....+--.+ |......+.+ .-..|+++.|
T Consensus 309 ~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A 385 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDA 385 (577)
T ss_pred hcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHH
Confidence 8899999888888775321 111122333333444448888877777665443332 2222222222 2345799999
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCCchhhHHHHHHHHHh-----cCCHHH
Q 011919 361 EKLFSKMLASGVKPDGLAC-SVMIRELCLGGQVLEGF---CLYEDIEKIGFLSSVDSDIHSVLLLGLCR-----KNHSVE 431 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~ 431 (475)
..+++...+.- |+..-. ..-+....+.|+.+.+. +++....+.. .+......+..-+.+ .++.+.
T Consensus 386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~----~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK----ENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc----cCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 99999887652 553221 12233456677777777 3333333321 133344444444433 578888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 432 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
|..++.++.+.- +++...|..+++.....+
T Consensus 460 a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 460 ARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 998888888775 677777777776665554
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.51 E-value=63 Score=31.35 Aligned_cols=180 Identities=11% Similarity=0.120 Sum_probs=98.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.|-...-+++..+..+-.+.-...+-.+|...| .+-..|..++.+|... .-+.-..+++++.+..+. |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344555666666666666666666666666544 4556666677777666 345666677766665443 444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~ 317 (475)
..|-+ ++.+.+..+|.++..+-..-+.+ ...|.-+... -..+.+..+.+...+.. .|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 66666777666665431100001 1234443321 12455666666655553 233333445555556677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
...++++|++++..+.+.+-+ |..+-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 777777777777777665533 3333333433
No 329
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.32 E-value=60 Score=31.03 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=80.2
Q ss_pred hcCCccCHHh--HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 011919 122 EEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI--IYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197 (475)
Q Consensus 122 ~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 197 (475)
+.|..|+... ..+.+..++..|+.+-+.-+++ .|..|+.. .....+...+..|+.+.+..+++.-....-..
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 98 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF 98 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence 3455554322 2234455556666544333333 33223221 11223445556777766655554321100001
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcHHHH
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA--YSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTY 274 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 274 (475)
+..-. ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++. |..+ ..|..-+
T Consensus 99 ~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~ 169 (413)
T PHA02875 99 YKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH----KACLDIEDCCGC 169 (413)
T ss_pred cCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc----CCCCCCCCCCCC
Confidence 11111 2223333455543 4444455565544321 12234444556665544444332 2111 0122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT---ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
+.+ ...+..|+.+ +.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.|..++
T Consensus 170 TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 170 TPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 222 2334445543 3444555565554322 123344344555553 3444455565554
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.21 E-value=5.4 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~ 226 (475)
.+|...|+.+.|..++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 331
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.45 E-value=31 Score=27.21 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+.++......+++.....+++.+..... ..+...|..++.+..+..- --.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35566555666666666666665532110 1234557777777755554 33456677777776777888888888
Q ss_pred HHHHHhc
Q 011919 383 IRELCLG 389 (475)
Q Consensus 383 i~~~~~~ 389 (475)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8776554
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.45 E-value=35 Score=30.14 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=54.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
.=|.+++..++|.+++...-+.-+....+||. ....-|-.|.+.+.+..+.++-..-....-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34677778888888887766655533333443 3344455677788877777777666543222233446666665554
Q ss_pred -----cCCHHHHHHHH
Q 011919 319 -----EGNLDEAYQLI 329 (475)
Q Consensus 319 -----~g~~~~a~~~~ 329 (475)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 37777777666
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.26 E-value=3.9 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~ 369 (475)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 334
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.19 E-value=51 Score=29.56 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCChhhHHHHHH-HHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH
Q 011919 196 YPDIITYVSMIK-GFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 196 ~~~~~~~~~li~-~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.|...+++.|.+ .+.+.|- ..-|.++|+...... ..+.++..+.+.+.-+.-+++| ||+-.+
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff----------Ppnkrs 225 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF----------PPNKRS 225 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc----------CCcchh
Confidence 445555555543 2333332 334556666555321 2344555555544444333332 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHH
Q 011919 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVV 349 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~ 349 (475)
-......+...|--+-..-.-.++.. | .-...-..|..-..+...+++.....++-.+..-.|+. ..|..+++
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMs 302 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMS 302 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhH
Confidence 66666666655532222111111110 0 00111234444455556677776666554444444554 35777766
Q ss_pred HHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 350 ELVRTKRLK-EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 350 ~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
+-.-+.+-+ -|.+.++.+ .+|..|+.+++..|+.+..+
T Consensus 303 aveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 303 AVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 554432221 133333333 46888888888888877654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.07 E-value=3.6 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.+..++.+.|++++|.+.|+++++.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3456667778888888888888887764
No 336
>PRK09687 putative lyase; Provisional
Probab=78.05 E-value=52 Score=29.56 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=127.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCCCcH
Q 011919 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM----ERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~ 271 (475)
.+|..+....+.++...|. +++...+..+.+. +|...=...+.+++..|+. +++...+..+... .++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCH
Confidence 3455555555566655554 3333333334332 3455555556666666653 4566666665332 2555
Q ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011919 272 VTYTSVIQIFCGKGMM-----KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.+-...+.++...+.. ..+...+..... .++..+=...+.++.+.++ +++...+-.+.+. ++...-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 5555555555554321 223333333332 2244444556666766666 3455555555542 23334444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 347 LVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 347 li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+.++.+.+ ....+...+..+.. .++...-...+.++.+.|+. .+...+-...+.+ + .....+.++.+
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~-----~--~~~~a~~ALg~ 247 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG-----T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-----c--hHHHHHHHHHh
Confidence 455555442 23456666665553 34566666777777777774 4555555555432 2 23456777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011919 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
.|.. +|...+..+.+.. +|..+-...++++.+
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 8875 6888888877654 477777776666643
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.25 E-value=7.7 Score=21.18 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555556666666666555544
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.84 E-value=43 Score=28.03 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=60.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCL 388 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 388 (475)
+-+.+.|++++|..-|...+..-..... ..|..-..++.+.+.++.|++-..+.++. .|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3467788888888888888775433222 33444556777888888888888777755 342 1222222346777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 011919 389 GGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~ 406 (475)
...+++|+.-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 788888888888888863
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.18 E-value=4.6 Score=20.80 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 011919 417 SVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~ 436 (475)
..+...+...|++++|..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444555555555555544
No 340
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.92 E-value=11 Score=23.07 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.+.|-..++..++++|.+.|+..++..++.+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 467777788888888888888888888877665
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.48 E-value=99 Score=31.52 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCccCHH--hHHHHHHH-HHHcCCHHHHHHHHHhcccCCCCCCHh--
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYK-EEGCVVSVK--MMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTI-- 165 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~--~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 165 (475)
.....|..++.. ++..++.+. +..++|..+ ++--+... +....+++.|...+++.....-+++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345566666654 455666665 444444333 33334443 346778888888888764432222211
Q ss_pred ---hHHHHHHHHHhcCChhHHHHHHHHhccCC----CCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCcCH
Q 011919 166 ---IYNNVIRLFCEKGDMIAADELMKGMGLID----LYPDIITYVSM-IKGFCNAGRLEDACGLFKVMKRHG---CAANL 234 (475)
Q Consensus 166 ---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~~~~ 234 (475)
....++..+.+.+... |...+++..+.- ..+-...|..+ +..+...++...|.+.++.+.... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234556666666555 877777765421 11112223333 223333478888888888776532 23444
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHHhcCC-------CCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011919 235 VAYSALLDGIC--RLGSMERALELLGEMEKEGG-------DCSPNVVTYTSVIQIFC--GKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 298 (475)
.++..++.+.. +.+..+++.+.++++..... ...|...+|..+++.++ ..|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555444 34556667777766633211 12456667777776554 5667666666665553
No 342
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.45 E-value=57 Score=28.69 Aligned_cols=174 Identities=13% Similarity=0.065 Sum_probs=89.4
Q ss_pred CCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHhccCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHC---CC-
Q 011919 159 DLRPDTIIYNNVIRL-FCEKGDMIAADELMKGMGLIDLYPDIIT---YVSMIKGFCNAGRLEDACGLFKVMKRH---GC- 230 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~---g~- 230 (475)
+-.||+..-|..-.+ -.+...+++|+.-|++..+..-.....- ...+|....+.|++++....|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345555543332211 1234467777777777665332333333 334566777777777777777766532 11
Q ss_pred -CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 011919 231 -AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCAP- 304 (475)
Q Consensus 231 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 304 (475)
.-+....|.+++.-....+.+--.++++.-... ..-..+.. |-+-+...|...|.+.+..++++++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~A-LkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDA-LKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123445566666555555555555555543321 00011111 22345556666667777777777666542111
Q ss_pred ---C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 305 ---N-------RVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 305 ---~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
| ...|..-|..|....+-.....++++.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 2245555566666666556666666554
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.40 E-value=36 Score=32.54 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
....|+++.+...+...... +.....+..+++....+.|++++|..+-+.|....+. +..............|-++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 44556666666665544431 1233345555666666666666666666666554443 2223322222333445566
Q ss_pred HHHHHHHHHHhCCC
Q 011919 324 EAYQLIDKVVAGGS 337 (475)
Q Consensus 324 ~a~~~~~~~~~~~~ 337 (475)
++...|+++.....
T Consensus 409 ~~~~~wk~~~~~~~ 422 (831)
T PRK15180 409 KSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccCC
Confidence 66666666655443
No 344
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.38 E-value=15 Score=29.16 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+.+.+.+.|++.++. -..++..+.+.++.-.|.++++++.+.+.+.+..|....+..+.+.|-.
T Consensus 7 ~~~~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3455666677665432 3456666777766678888888888888777778777778888777754
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.33 E-value=1.1e+02 Score=31.96 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=119.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHH-------HHHHHHH-HHHhcCChHHHHHHHHHHHhcC--CCCCCcHHHHHHHHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLV-------AYSALLD-GICRLGSMERALELLGEMEKEG--GDCSPNVVTYTSVIQ 279 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~ 279 (475)
....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+.....= ....+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678899998888876542222211 2333222 2334688999999988877631 011234556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCCH--HHHHHHHHHHHhCC--CC----CChhhHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLI-----KGFCVEGNL--DEAYQLIDKVVAGG--SV----SSGGCYSS 346 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~--~~a~~~~~~~~~~~--~~----~~~~~~~~ 346 (475)
+..-.|++++|..+..+..+..-.-+...|.... ..+...|.. .+.+..|....... -. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999887766542223333333222 234455632 23333333332210 01 11233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLA----SGVKPDGLAC--SVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSV 418 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 418 (475)
+..++.+ .+.+..-...-.+ ....|-...+ ..|+......|++++|...++++......+ .++-.+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4545444 3333332222222 2222222222 256677778899999999999988764433 222222222
Q ss_pred HHHHH--HhcCCHHHHHHHHHH
Q 011919 419 LLLGL--CRKNHSVEAAKLARF 438 (475)
Q Consensus 419 li~~~--~~~g~~~~A~~~~~~ 438 (475)
.+... ...|+..++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22222 246788877776655
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.22 E-value=57 Score=28.66 Aligned_cols=205 Identities=13% Similarity=0.135 Sum_probs=122.6
Q ss_pred hcCCccCHHhHHHHHHH-HHHcCCHHHHHHHHHhcccCCCCCCHh---hHHHHHHHHHhcCChhHHHHHHHHhcc---CC
Q 011919 122 EEGCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTI---IYNNVIRLFCEKGDMIAADELMKGMGL---ID 194 (475)
Q Consensus 122 ~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~ 194 (475)
..+-.||+..=|..-.+ -.+....++|+.-|++..+..-..... ....++....+.|++++..+.+.++.. ..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34556777665544332 223457899999999887753233333 345678888999999999999988843 11
Q ss_pred C--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-
Q 011919 195 L--YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLV----AYSALLDGICRLGSMERALELLGEMEKEGGD- 266 (475)
Q Consensus 195 ~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 266 (475)
+ .-+....|.++.-.....+.+....+|+.-.+. .-.-+.. |-..|...|...|.+.+..+++.++.+....
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 124556778887777777777776666643321 0011222 3356778888889999999999888764210
Q ss_pred -CCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 011919 267 -CSPN-------VVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGF-----CVEGNLDEAYQ 327 (475)
Q Consensus 267 -~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~~~a~~ 327 (475)
-..| ...|..=|+.|....+-.+...++++.... .--|.+... .+|+-| .+.|.+++|-.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 0111 134555566777777666777777765432 223444333 333333 34466666543
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.59 E-value=83 Score=30.23 Aligned_cols=129 Identities=6% Similarity=-0.109 Sum_probs=85.1
Q ss_pred HHHHHHhhhCCCChHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHH
Q 011919 61 CVIEVLHRCFPSQSQMGI-RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139 (475)
Q Consensus 61 ~~~~~l~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 139 (475)
...++-+.+..++...|- ++|.-...+++.+--.. ....+....|+++.+...+....+. +.....+...+++..
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~---l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ---LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH---HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 344555566566655554 45555555555443333 3344566678899998888775442 344566778888888
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011919 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 194 (475)
.+.|++++|...-+-|....++ +++......-..-..|-++++.-.|.++...+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8899999999999998877664 44544444444455677888888888876544
No 348
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.39 E-value=33 Score=25.55 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCC
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~ 463 (475)
-|..|+..|...|..++|++++.+.... .-++.......+++.+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 3788888888888888888888887761 111222222334666666643
No 349
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.28 E-value=25 Score=26.13 Aligned_cols=26 Identities=27% Similarity=0.759 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 274 YTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554443
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.54 E-value=1e+02 Score=30.89 Aligned_cols=182 Identities=14% Similarity=0.060 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHhcc-------CCCCCChhhHHHHHHHHHhc
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRL-----FCEKGDMIAADELMKGMGL-------IDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 212 (475)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|....+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888765 22322222222 3456789999999998866 44 333556667777664
Q ss_pred C-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--hc
Q 011919 213 G-----RLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GK 284 (475)
Q Consensus 213 ~-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~ 284 (475)
. +.+.|..++....+.|. |+....-..+..... ..+...|.++|....+.|. +...-+..++-... -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 67889999999988874 355544333333333 3467899999999998662 33322222222222 33
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
.+...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+.+.+..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 47899999999999887 3332222333334444 7777777777777766644
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.73 E-value=77 Score=30.32 Aligned_cols=209 Identities=17% Similarity=0.130 Sum_probs=102.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH--HHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVA--YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV--TYTSVIQIFCG 283 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 283 (475)
..+..|+.+.+ +.+.+.|..|+... ..+.+...++.|+. ++.+.+.+.|. .|+.. .....+...+.
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga--~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGA--IPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCC--CccccCCCcccHHHHHHH
Confidence 33456776554 44445687776543 23455556666664 35555666442 33321 11234555667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCH
Q 011919 284 KGMMKEALGILDRMEALGCAPN----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRL 357 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~ 357 (475)
.|+.+.+..+++ .|...+ ..-. ..+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 788776555554 332211 1112 2333445566654 4555556666554321 11233444567776
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+-+..+ .+.|..++ ..-.+.|..| +..|+.+ +.+.+.+.|..+.. +..-..+.+...+..|+.+
T Consensus 149 ~~v~~L----l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 KGIELL----IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHHH----HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 654443 44454443 2333444444 4556654 44556666654321 1111123444344566654
Q ss_pred HHHHHHHHcCCCCCh
Q 011919 434 KLARFMLKKRIWLQG 448 (475)
Q Consensus 434 ~~~~~m~~~~~~~~~ 448 (475)
+.+.+++.|..++.
T Consensus 217 -iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 -IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHHCCcCcch
Confidence 45556667766654
No 352
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.50 E-value=20 Score=24.63 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCCCchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011919 408 LSSVDSDIHS-VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 408 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
.|..+..-|+ ++++-+.++.--++|+++++-|.+.| ..++...+.+
T Consensus 25 ~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 25 EPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred cccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3333334443 45666777788888888888888888 6666555443
No 353
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.36 E-value=60 Score=27.62 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..+||.+.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+=+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 44566665556666666666666666665432222222222222 2224566666655554444
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.13 E-value=12 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=19.8
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 292 (475)
...+.++|+..|....+.-.. +++ -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443211 111 1233444455555555554444
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.12 E-value=29 Score=26.45 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
.+-++.+...++.|+.......+++|.+.+|+..|.++|+-.+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444555566666666666666666666666666665543
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.60 E-value=36 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=25.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445566666665555442 455555544432 24455555555555555544
No 357
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.94 E-value=1.2e+02 Score=30.55 Aligned_cols=76 Identities=5% Similarity=-0.077 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
....+.++.+-...+...-..++..|.+.|-.+.|.++++.+-..-+ ...-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444433333444455566666666666666666665543211 12234444455556666555555544444
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.97 E-value=41 Score=25.66 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+..+-++.....++-|++.....-+++|.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555667777777777777777777777777777777764
No 359
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.92 E-value=1.2e+02 Score=30.06 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=109.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
++..+|...+.--.+.|+.+.+.-+|+.+.-. |..=...|--.+...-..|+.+-|..++....+--++-.+.+--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~---cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP---CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 34567888888888999999999999888751 222233444444444555888888888877665433333222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHH---
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAE---KLFSKMLASGVKPDGLACSVMIR--- 384 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~~~~~~li~--- 384 (475)
-....-..|+++.|..+++.+...- |+. ..-..=+....+.|..+.+. +++....+... +......+.-
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHH
Confidence 2222345689999999999987764 332 11112233445677777777 33333332211 1112222221
Q ss_pred --HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011919 385 --ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 385 --~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
.+.-.++.+.|..++.++.+.- +.+...|..++......+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~---~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDIL---PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcC---CccHHHHHHHHHHHHhCC
Confidence 1334578899999999888864 236667777776665554
No 360
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.74 E-value=36 Score=24.01 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011919 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
.|+.+.|.+++..+. .| +..|..++.++.+.|..+.|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 344555555554443 22 234444455555554444443
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.69 E-value=70 Score=26.87 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCAPNR-----VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
.-+.+.|++++|..-|....+. +++.. ..|..-..++.+.+.++.|++-....++.+... ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHh
Confidence 4578899999999999998876 33332 234444456778889999988888887765431 2222333457888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 354 TKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
..++++|++-|+++.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 89999999999999876 45433
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.33 E-value=47 Score=33.47 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
..-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+.+.+..+-+.+.+
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666665544321 223455556666666666665555554443
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.93 E-value=11 Score=19.32 Aligned_cols=28 Identities=14% Similarity=-0.132 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|..+...+...|++++|...++..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666777777778888888877777654
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.51 E-value=1.6e+02 Score=30.43 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=90.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCcc---CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVV---SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
++.+...+.+++|+++.+.... ..| -.......|..+.-.|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4566677888888887766433 233 345667788888889999999998888875 3666777777777777
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CC-------CcCHHHHHHHH
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---------GC-------AANLVAYSALL 241 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~-------~~~~~~~~~ll 241 (475)
++......+ +....-..+...|..++..+.. .+...-.++..+.... .. .-+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 765544333 3322223456677777777665 2222222221111000 00 01122334477
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 011919 242 DGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..|...+++..|.+++-...+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 778888888888887766543
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.33 E-value=1.3e+02 Score=29.19 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHH-CCCCCCHHHH
Q 011919 304 PNRVTI-STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV--RTKRLKEAEKLFSKMLA-SGVKPDGLAC 379 (475)
Q Consensus 304 p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 379 (475)
|+..|+ +.+++.+.+.|-..+|..++..+.... +|+...|..+|+.-. ..-+..-+.++|+.|.. .| .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444443 445556666666667777766665542 334555555554321 11225556666666654 34 455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
...+.-=...|..+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 5555544566666666666555554
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.83 E-value=24 Score=23.03 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.-.-.+|.+|.+.|++++|.++++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344566777777777777777766653
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.76 E-value=75 Score=26.16 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 011919 322 LDEAYQLIDKVVAGGSVSSGG---CYSSLVVELVRTKRLKEAEKLFSKMLAS-----GVKPDG-LACSVMIRELCLGG-- 390 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~-~~~~~li~~~~~~g-- 390 (475)
++.|.+..+.-...++. |.. -|...+.-+.+.....++.+++++.... .+.|+. .++..+-.+|...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 44555555554433322 222 2333444444444444444444443321 235553 56666666665553
Q ss_pred --C-------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 391 --Q-------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 391 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +++|...|+...+. . |+..+|+.-+... ++|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~--P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--D--PNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--C--CCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 23333344444443 2 2566676666554 23555665555554
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.63 E-value=1e+02 Score=27.63 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
+.....|..+|.+.+|.++.+.....+ +.+...+..+++.+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 333445556666666666666555432 334455555566666666544444444443
No 369
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=65.09 E-value=88 Score=26.70 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=41.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|--|. +.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 45688888888888999999999988876542222222222222 23457788887766666554
No 370
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=64.94 E-value=46 Score=23.41 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhccc
Q 011919 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
++|+.....|+..|...|..++....-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777776666666666677766654
No 371
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=64.86 E-value=46 Score=30.35 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
.+.|.++|.+++|+..|....... +.+.+++..-..+|.+...+..|..=-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 467888888888888887766532 237777777777777777766555444443
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.61 E-value=45 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHcCCHHHHHHHHHhccc
Q 011919 138 LCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~ 157 (475)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 55666666666666666554
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.34 E-value=95 Score=26.84 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=15.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
..-...+++.+|+++|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556777777777777665443
No 374
>PRK13342 recombination factor protein RarA; Reviewed
Probab=63.64 E-value=1.4e+02 Score=28.61 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHh---cCC-ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 111 SIIIDVVEAYKE---EGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 111 ~~a~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
+....++..... .++ ..+......++..+ .|+...++.+++.....+...+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 444445544332 133 45555555555443 6777777777776543211111 1222222
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----hHHHHHHHH
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCN---AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----MERALELLG 258 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~ 258 (475)
+..... ....+...+..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++
T Consensus 216 ~~~~~~-~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 216 LQKRAA-RYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred Hhhhhh-ccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 222111 111222334445555544 47889999999999998877765555555555555442 334555555
Q ss_pred HHHhc
Q 011919 259 EMEKE 263 (475)
Q Consensus 259 ~~~~~ 263 (475)
....-
T Consensus 295 ~~~~~ 299 (413)
T PRK13342 295 AVERI 299 (413)
T ss_pred HHHHh
Confidence 55553
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.49 E-value=25 Score=22.97 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 011919 240 LLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~ 260 (475)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.34 E-value=1.1e+02 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
-++..+..+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356677778888888888888876653
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.18 E-value=51 Score=23.31 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
..|+.+.|.++++.+. +|.. .|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 3455555555555555 4332 255555555555544433
No 378
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.46 E-value=1.2e+02 Score=27.20 Aligned_cols=23 Identities=0% Similarity=-0.003 Sum_probs=10.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
++..+...|++.++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444555555444444443
No 379
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=62.41 E-value=1e+02 Score=26.48 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=45.4
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC---CHhhH--HHHHHHHHhcCChhHHHHHHHHhccCCCCCChh
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP---DTIIY--NNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 200 (475)
.+...-+|.|+--|.....+.+|...|..- .|++| |..++ ..-|+.....|+.+.|.+..+++-..-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 334444444444333333355555555432 22222 22222 334555666777777777766664332233332
Q ss_pred hHHHHHH----HHHhcCCHHHHHHHHHH
Q 011919 201 TYVSMIK----GFCNAGRLEDACGLFKV 224 (475)
Q Consensus 201 ~~~~li~----~~~~~~~~~~a~~~~~~ 224 (475)
.+-.|.. =..+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222211 13456666777766664
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.71 E-value=44 Score=23.99 Aligned_cols=70 Identities=11% Similarity=-0.126 Sum_probs=38.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHH
Q 011919 387 CLGGQVLEGFCLYEDIEKIGFLSSV-D-----SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVE 456 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~ 456 (475)
.+.|++..|.+.+....+....... . ....-.+.......|++++|.+.+++.++..- .-|.........
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5667777776555555443211100 1 12222344556678999999999999886432 234444443333
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.13 E-value=36 Score=20.85 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=14.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 383 (475)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555544444444443
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.66 E-value=1.5e+02 Score=27.94 Aligned_cols=94 Identities=10% Similarity=-0.021 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCcC
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---------GCAAN 233 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~~~ 233 (475)
..+.-+.+.|..+|+++.|++.|.+.+..- ..-.+..|-.+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356777888889999999999998854321 1123445666777777788888777777766554 13334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
...+..+.....+ ++..|.+.|-..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 4455555554444 666666655433
No 383
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.17 E-value=59 Score=32.59 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCCh
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
+++.+|...|++-++.++++..... |-+.=...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555666666666666665555432 2122233455555555555543
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.11 E-value=34 Score=26.31 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+.++|..|..+|+-. .-...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~-~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT-KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTST-TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544322 2344455555555555555555555543
No 385
>PHA03100 ankyrin repeat protein; Provisional
Probab=59.26 E-value=1.6e+02 Score=28.84 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=111.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH--HHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCcCHH---HHH
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY--VSMIKG-----FCNAGRLEDACGLFKVMKRHGCAANLV---AYS 238 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~ 238 (475)
..+...++.|+.+-+..++ +.|..|+.... ...+.. .+..|+.+ +.+.+.+.|..++.. ..+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 3444556677765544444 45655554322 223333 44444433 344555666554332 233
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHH
Q 011919 239 ALLDGIC-RLGSMERALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--STLIK 314 (475)
Q Consensus 239 ~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~ 314 (475)
.+..+.. ..|+.+-+..++ +.|..+. .+.... ..+...+..|. .-.++.+.+.+.|..++...- ...+.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hhhHHHhcccChHHHHHHHH----HcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 3333332 566655444443 3332211 122222 34444555552 123455556666766543321 22344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGC--------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMI 383 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li 383 (475)
..+..|+.+ +.+.+.+.|..++... +...+...+..|. ...++.+.+.+.|..++. .-.+.|.
T Consensus 182 ~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~ 255 (480)
T PHA03100 182 IAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH 255 (480)
T ss_pred HHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 455666554 4444555665554221 0233334444554 113344455556655443 3344554
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 451 (475)
.| +..|+.+ +++.+.+.|..+.. +..-.+.+- ..++.++. ++++.+++.|. +....
T Consensus 256 ~A-~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~-~A~~~~~~----~iv~~Ll~~g~--~i~~i 312 (480)
T PHA03100 256 YA-VYNNNPE----FVKYLLDLGANPNLVNKYGDTPLH-IAILNNNK----EIFKLLLNNGP--SIKTI 312 (480)
T ss_pred HH-HHcCCHH----HHHHHHHcCCCCCccCCCCCcHHH-HHHHhCCH----HHHHHHHhcCC--CHHHH
Confidence 44 4455543 44555566643211 111122332 22344443 35555666663 44443
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.16 E-value=43 Score=32.97 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=41.1
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
.|+...|.+.+.........-..+..-.|.+...+.|....|-.++.+..... ...+-++-.+.++|.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555444322111122223334444445555555555555544432 22334455555666666666666666
Q ss_pred HHHHHhc
Q 011919 257 LGEMEKE 263 (475)
Q Consensus 257 ~~~~~~~ 263 (475)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6655553
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.13 E-value=1.4e+02 Score=27.39 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLAS---GVKPDGLACSV--MIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
...++...-+.++.++|+++++++.+. --.|++..|.. +.+.+...|+.+++.+++++..+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444555566677888888888887642 23566655543 44556677888888888887776
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.93 E-value=1.4e+02 Score=27.16 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
.+-.....||+.|+-+.|++.+++-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455566666666665555443
No 389
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.89 E-value=62 Score=29.11 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----------cCCHH
Q 011919 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----------KNHSV 430 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~ 430 (475)
.++|+.|.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||. .|++.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-------~~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-------PQRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-------hhhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 567788888888888888887777778888888888888888873 2236666666653 35555
Q ss_pred HHHHHHH
Q 011919 431 EAAKLAR 437 (475)
Q Consensus 431 ~A~~~~~ 437 (475)
.-+++++
T Consensus 336 ~nmkLLQ 342 (370)
T KOG4567|consen 336 VNMKLLQ 342 (370)
T ss_pred HHHHHHh
Confidence 5555543
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.79 E-value=33 Score=28.71 Aligned_cols=32 Identities=9% Similarity=-0.156 Sum_probs=21.4
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhccc
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666776777666666654
No 391
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.72 E-value=1.4e+02 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 238 SALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...+..+...|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555566666666666655544
No 392
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.07 E-value=2.4e+02 Score=29.16 Aligned_cols=154 Identities=13% Similarity=0.075 Sum_probs=89.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRP---DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 212 (475)
|+-+.+.+.+++|+++-+.-... .| -...+...|..+.-.|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 44566778899999888766542 33 345677888889999999999988888873 3566676666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------------cCCCCCCcHHHHHHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK--------------EGGDCSPNVVTYTSVI 278 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~~li 278 (475)
++......++ .......+...|..++..+.. .+...-.++..+... +-.....+...-..|+
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 6654433222 221122455677777766665 222222211111100 0000011222334477
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011919 279 QIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..|...+++..|+.++-..++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 777788888888877766543
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.86 E-value=58 Score=27.19 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=17.2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555544
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.28 E-value=2.2e+02 Score=28.36 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~ 404 (475)
.+.+.|-+..|+++.+-+.+....-|+.....+|..| .++.+++-.++++++...
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3455566666666666666543333444445555544 344556655555555543
No 395
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.71 E-value=65 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
.++..+...++.-.|.++++++.+.+...
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 34444444444444555555555443333
No 396
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.33 E-value=51 Score=24.47 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
++++-+-++...++|+++++-|.+.| ..+....+.|-..+.+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 35555666777777777777777777 66666665555554444
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.22 E-value=27 Score=31.29 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+..|..-.+.||+++|++++++..+.|.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555555543
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.21 E-value=28 Score=31.14 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 237 (475)
|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456667777777777777777777776655333333
No 399
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.15 E-value=2.6e+02 Score=28.61 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=13.2
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRT---KRLKEAEKLFSKML 368 (475)
Q Consensus 344 ~~~li~~~~~~---g~~~~a~~~~~~m~ 368 (475)
+..||..|.+. .++.+|.+.|--+.
T Consensus 327 ~arLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 327 FARLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 55566666542 45556666655544
No 400
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.78 E-value=96 Score=27.97 Aligned_cols=58 Identities=9% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.++++.+.+.++.|.-.++..+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-------D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-------DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-------ChhhhHHHHHHHHH
Confidence 35667777777777777777777777777777777777777765 22235566665553
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.69 E-value=1.8e+02 Score=26.72 Aligned_cols=78 Identities=4% Similarity=-0.136 Sum_probs=41.4
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCChHHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR---LGSMERALELL 257 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~g~~~~a~~~~ 257 (475)
+.-+.++++..+.+ +.+...+..+|..+.+..+.++..+.++++..... -+...|...+..... .-.++...++|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 33455555555543 34555556666666666666666666666666532 145555555554433 12344444444
Q ss_pred HHH
Q 011919 258 GEM 260 (475)
Q Consensus 258 ~~~ 260 (475)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 402
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.55 E-value=1.3e+02 Score=24.89 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+++|.+.|+..... .|+...|+.-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~----~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE----DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc----CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 44555555555543 366666666555442 344444444444
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.21 E-value=3.1e+02 Score=29.22 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHhccCCCCCChhhHH--
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCEKGDM--IAADELMKGMGLIDLYPDIITYV-- 203 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 203 (475)
-|..|+..|...|+.++|+++|.+..+.. -..-...+-.+++-+-+.+.. +-++++-+...+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 57888999999999999999999887621 001112233455555555544 44555444443322111011111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 204 ----------SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 204 ----------~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455666777788888888776656677777777777764
No 404
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.12 E-value=1.8e+02 Score=26.37 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=88.7
Q ss_pred ccCHHhHHHHHH-HHHHcCC-HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 126 VVSVKMMKVIFN-LCEKARL-ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 126 ~~~~~~~~~li~-~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
.|....++.|.. .+.+.|- ..-|.++|+.... ....+.++..+-+.+.-++-+++| +|+..+-.
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~------Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E 227 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV------EKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVE 227 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh------hccHHHHHHHHHhcChHhHHHHhc--------CCcchhHH
Confidence 666777777775 5555552 3557778876543 123567787777666655555554 67766655
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH----HHHHHHHH
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV----VTYTSVIQ 279 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~li~ 279 (475)
.....+...|--+-..-.-.++.. | .-...-..|..-..+...+++......+-.++ .++ |+. ..|..+++
T Consensus 228 ~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~nl-Pe~eVi~ivWs~iMs 302 (412)
T KOG2297|consen 228 HFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NNL-PETEVIGIVWSGIMS 302 (412)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cCC-CCceEEeeeHhhhhH
Confidence 555555544432221111111100 0 00111122333333444556655555443332 222 443 35777776
Q ss_pred HHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 280 IFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 280 ~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
+---+.+- --|.+.++.+ .+|.-|+.+++..|+.+-.+
T Consensus 303 aveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 303 AVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 54433221 1233444443 35788889999998877654
No 405
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.58 E-value=1.4e+02 Score=30.23 Aligned_cols=90 Identities=22% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCCCcHHHHH
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSME------RALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
+|+.+|...|++..+.++++.+... |-+.=...+|..++...+.|.++ .|.+.+++..- .-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-----n~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-----NGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-----CCcchHHH
Confidence 8899999999999999999988764 33344567888888888888654 44455554442 35778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011919 276 SVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.|+++-..--+-.-..-++.++.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 88776554333333333444443
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.53 E-value=4.8e+02 Score=31.21 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+|-...+....+|.++.|...+-...+.+ .| ..+--...-+...|+...|+.++++-++..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP----EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3567777777777999999998887777765 22 556667777888999999999999988664
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.09 E-value=1.3e+02 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=12.1
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 011919 242 DGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666665554
No 408
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.98 E-value=68 Score=20.98 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=19.8
Q ss_pred hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHH-----HhcCCHHHHHHH
Q 011919 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF-----CNAGRLEDACGL 221 (475)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~ 221 (475)
..|++-+|.++++++=.....+....+..+|... .+.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4555555555555554322123334444444432 234555544443
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.81 E-value=5.1e+02 Score=31.02 Aligned_cols=306 Identities=12% Similarity=-0.022 Sum_probs=157.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhc----ccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 135 IFNLCEKARLANEAMWVLRKM----PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
+..+-.+.+.+.+|+..++.- ++. ......|..+...|...++++...-+...-.. +... ..-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHH
Confidence 344556678888888888873 221 11233344455588888888887777653111 1222 23344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-HHHHHhcCCHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV-IQIFCGKGMMKE 289 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 289 (475)
..|++..|..-|+.+.+.+ ++...+++.++......|.++.+....+-..... .+....|+.+ +.+--+.++++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~---se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR---SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc---CHHHHHHHHHHHHHHhhhcchhh
Confidence 6788999999999888875 2346677777777777788887777666555431 2333334332 334456667776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHhcCC
Q 011919 290 ALGILDRMEALGCAPNRVTISTL--IKGFCV--EGNLDEAYQLIDKVVAGGSVS---------SGGCYSSLVVELVRTKR 356 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~--~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~ 356 (475)
....+. +. +..+|... .....+ ..+.-.-.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 666554 11 12222222 111111 112111222333333221111 01234433333322111
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHH----H---c-CCCCCCchhhHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLA------CSVMIRELCLGGQVLEGFCLYEDIE----K---I-GFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~~~~g~~~~a~~~~~~~~----~---~-~~~~~~~~~~~~~li~~ 422 (475)
....+... +..++..+ |..-+. +.+....+.+-.-.++ . . +.. ..-..+|-...+.
T Consensus 1610 ----~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~-~~~ge~wLqsAri 1679 (2382)
T KOG0890|consen 1610 ----ENSIEELK--KVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLK-SRLGECWLQSARI 1679 (2382)
T ss_pred ----HHHHHHhh--ccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhcccccc-chhHHHHHHHHHH
Confidence 11111111 12222211 111111 1111111211111111 1 1 221 1245778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.-.+|+++.|...+-++.+.+ -+..+-.....+...|+...|..+++
T Consensus 1680 aR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 878999999999887777666 23445555778888999998887775
No 410
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.74 E-value=2.1e+02 Score=26.60 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSL----VVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
+.++..-+......+.++.+.--..+|..| |...++.+..++|.+..-+|.+.|
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444444444444444333323333333 222234455555555555555543
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.42 E-value=17 Score=28.06 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
.|.-..|..+|+.|.+.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34445566666666666666653 444443
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.22 E-value=1.7e+02 Score=25.23 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHHhcCChHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL----DGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-|......|+.++|.+....+-..-+..|...+-.|. --..+.|..++|+++.+.-..
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 4555566666666666666554333333332222221 123455666666666655443
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.84 E-value=1.9e+02 Score=25.89 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcC
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKR----HGCAANLVAYSA-LLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
.+..+..-|++.+|.+.+.+..++..+ .|.+.|+....+ |.-.|....-.++.++..+.+.++|
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 344444555555555555444433222 233333332221 1222333333445555555555543
No 414
>PRK10941 hypothetical protein; Provisional
Probab=49.68 E-value=1.9e+02 Score=25.79 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR-IWLQGPYVDKIVEH 457 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~ 457 (475)
.+.+-.+|.+.++++.|+++.+.+.... |.+..-+.--...|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4455566777788888888888877754 2344555556666777888888887777777654 13444444444444
Q ss_pred HH
Q 011919 458 LK 459 (475)
Q Consensus 458 ~~ 459 (475)
+.
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.12 E-value=1.7e+02 Score=27.79 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHh--hHHHHHHHHHh--cCChhHHHHHHHHhccC
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTI--IYNNVIRLFCE--KGDMIAADELMKGMGLI 193 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 193 (475)
.+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888875 444444 44555555543 45677888888876643
No 416
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.05 E-value=3.5e+02 Score=28.58 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=83.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHH--hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVK--MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
+.+-..|+++.|.++-+. .|+.. ++..-...|.+.+.+..|.++|.++.+ .+..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 455556777777665432 33322 222233467778889999999988843 23334444444555
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHH-----HHHHHH-hcCCHH----HHHHHHHH--------HHHC-CCCcCHHHHHHH
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVS-----MIKGFC-NAGRLE----DACGLFKV--------MKRH-GCAANLVAYSAL 240 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~-~~~~~~----~a~~~~~~--------m~~~-g~~~~~~~~~~l 240 (475)
.+ ++..|-.=+-..++|...+-.. ++..|. +.++.+ ++..-++. +... ...-+.....+.
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Confidence 44 4444332222233443333222 222222 222222 22222211 1110 001122223344
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
...+...|+.+.+..+-.-+.. |..++.-+++.+.+++|++++..-
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d-----------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD-----------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566777776665554443 566777778888888888776543
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.91 E-value=1.4e+02 Score=31.26 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=71.9
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+.+.|++.-..+- +..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.+
T Consensus 651 ~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLE 715 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHH
Confidence 34556677777766655442 556677777777777777777777776553 223333444556666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+..++.+..... -|..+. ... -.-.|+.++-.+++...-. .| ..|. ....+|.-++|.++.++
T Consensus 716 KL~Km~~iae~r---~D~~~~--~qn-alYl~dv~ervkIl~n~g~-----~~--layl----ta~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 716 KLSKMMKIAEIR---NDATGQ--FQN-ALYLGDVKERVKILENGGQ-----LP--LAYL----TAAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHHHHHHhh---hhhHHH--HHH-HHHhccHHHHHHHHHhcCc-----cc--HHHH----HHhhcCcHHHHHHHHHh
Confidence 655554443322 122111 111 1123666666666654433 11 1221 12346777888888888
Q ss_pred HHHc
Q 011919 297 MEAL 300 (475)
Q Consensus 297 m~~~ 300 (475)
....
T Consensus 779 ~~~~ 782 (1202)
T KOG0292|consen 779 LEKQ 782 (1202)
T ss_pred hccc
Confidence 7653
No 418
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.91 E-value=1.2e+02 Score=23.28 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHhHHhhccccC
Q 011919 431 EAAKLARFMLKKRIWLQGP-YVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
+..++|..|..+||..... .|......+...|++..|.++.+.|
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 3566677777776654433 4556666677777777777766554
No 419
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.90 E-value=3e+02 Score=27.82 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=43.3
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 195 (475)
+....|..++..+.... .+.-.++++++.. . + ...+..+++++...|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45667777777776655 5777777777654 1 1 56778888888888887666666666655443
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.72 E-value=2.7e+02 Score=27.35 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
+...+..++......+....|+.+++++.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4444555555555545556777777777777765543
No 421
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=2.3e+02 Score=26.12 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH-
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAG---GSVSSGGCY--SSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA- 378 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~- 378 (475)
..++....+.++.++|.+.++++.+. .-.|+...| ..+...+...|+..++.+.+.+..+ .|+.|+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445556677999999999998754 233454444 4556677789999999999988876 577775443
Q ss_pred HHHHH
Q 011919 379 CSVMI 383 (475)
Q Consensus 379 ~~~li 383 (475)
|..+-
T Consensus 159 fY~ls 163 (380)
T KOG2908|consen 159 FYSLS 163 (380)
T ss_pred HHHHH
Confidence 44433
No 422
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.01 E-value=1.1e+02 Score=22.37 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 202 (475)
.+...|++++|..+.+.+. .||...|-.|.. .+.|..+++..-+..|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 5667888888888887774 488888776654 35666666666666676665 4444444
No 423
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.54 E-value=1.7e+02 Score=24.41 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--------CC----CCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKIGF--------LS----SVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+++-.|.+.-++.+++++++.|.+..+ .. .+.-..-|.....+.+.|..|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455566777777777777777766421 11 11334567777778888888888888773
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.45 E-value=2.1e+02 Score=25.35 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011919 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
|...+++..|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 55667888888877777654
No 425
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.26 E-value=86 Score=23.37 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHH
Q 011919 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140 (475)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 140 (475)
+||.|++. ..+.++...++|+++++-|.++| ..+...-+.|-..+.
T Consensus 61 sGy~PtVi------D~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 61 SGYNPTVI------DYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred cCCCChHH------HHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 46666554 44566777888888888888887 555554444444333
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.20 E-value=74 Score=21.08 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
...++.++...++..-.++++..+.++...| ..+..+|-.-++.+.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666 3555555544444443
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.89 E-value=2.7e+02 Score=26.41 Aligned_cols=93 Identities=6% Similarity=0.041 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhcccCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC---------CCCCC
Q 011919 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFD--LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI---------DLYPD 198 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~ 198 (475)
..+.-+...|..+|+++.|++.|.+..+.- .+..+..|-.+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456677889999999999999999966531 1234455666777777889988888777776543 12333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKV 224 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~ 224 (475)
...+..+...+.+ ++..|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 4445555444443 66666655543
No 428
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.64 E-value=3.5e+02 Score=29.37 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
..+.|+.+=+-+++++.+. +++..-|. |+ ...+++++|++-+.++
T Consensus 883 ~SQkDPKEYLPfL~~L~~l----~~~~rry~--ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 883 QSQKDPKEYLPFLQELQKL----PPLYRRYK--ID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HhccChHHHHHHHHHHHhC----Chhheeee--Hh--hhhCCHHHHHHHHHhh
Confidence 3445666666666666552 23222221 11 2457888888876543
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.51 E-value=26 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
..|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566777888888888877754 6666654
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.26 E-value=2.7e+02 Score=26.33 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=37.6
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFC--NAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 228 (475)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788899999999988876 555544 3444445543 456778888888877654
No 431
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.83 E-value=1.4e+02 Score=29.63 Aligned_cols=103 Identities=12% Similarity=-0.113 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+...|.+.+.........-..+....|.+.+.+.|-...|-.++.+...... ....++..+..++.-..+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~---sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS---SEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc---cCchHHHhcchhHHHHhhhHHH
Confidence 3577888888777665332111223455566667777888888888887776552 1446788888999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 433 AKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
++.|+++++.. +.++..-+.+...-|
T Consensus 696 ~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 99999999887 455555555444333
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.12 E-value=1.5e+02 Score=23.12 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 374 PDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++..+--.+..++.+.. +..+.+.+++++.+. -.|.........|..++.+.++++++.++.+.+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44444444444554443 455666777777762 2233344444556667777777777777777777664
No 433
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.00 E-value=1.5e+02 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=10.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
..+...++.-.|.++++.+.+.+
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~ 55 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAE 55 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhC
Confidence 33333344444555555555444
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=2.2e+02 Score=24.85 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV-MIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~ 393 (475)
|.....++.|...|.+.+... |+. .-|..=+.++.+..+++.+.+--...++. .|+...-.. +-.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 555567888888777766654 443 34566667777888888887777766643 566544333 334556777888
Q ss_pred HHHHHHHHHHHcC--CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 394 EGFCLYEDIEKIG--FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 394 ~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.|+..+.+..+.+ ..+++....+..|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888775432 112223455666655533333344444554443
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.89 E-value=45 Score=31.56 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=15.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+.+|-.+..+|.-.+++.+|.+.|...
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.75 E-value=1.4e+02 Score=23.63 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555554444444333444444444
No 437
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=43.65 E-value=1.9e+02 Score=24.14 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=12.8
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~ 441 (475)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356888888877766653
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.55 E-value=60 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
+..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 334444444455666666666666556666666666666666643
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.88 E-value=51 Score=17.21 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHc
Q 011919 391 QVLEGFCLYEDIEKI 405 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~ 405 (475)
+.+.+..+|+.+.+.
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555443
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.88 E-value=2.6e+02 Score=25.44 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhcCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 250 MERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.+.|.+.|+.....+.. ...+......++....+.|+.+.-..+++..... .+...-..++.+.+-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 44555555555542111 0123333344444445555544433333333322 234444555555555566666666
Q ss_pred HHHHHHhCC
Q 011919 328 LIDKVVAGG 336 (475)
Q Consensus 328 ~~~~~~~~~ 336 (475)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 666665543
No 441
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.99 E-value=1.8e+02 Score=23.76 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344555544433 2333333334444566666666665554444444444455555543
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=2.8e+02 Score=25.41 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR---- 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~---- 306 (475)
...+.....-||+.||.+.|++.+.+-.++ +.|.+.|+..+.+-+. .|....-+.+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345566778899999999999988776543 1344667666654333 344444456666666777777765543
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
.+|..+- +....++.+|-.+|-+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2343332 3345678888888877654
No 443
>PRK09857 putative transposase; Provisional
Probab=41.23 E-value=2.4e+02 Score=25.52 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
.++......++.++..++++.+.+.. .........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555554431 11222233444445555555556666666666665443
No 444
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.12 E-value=1.3e+02 Score=21.47 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=13.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 011919 240 LLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777776666654
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.78 E-value=87 Score=20.75 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
....++.++..+++..-.+.++..+.+..+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444444444
No 446
>PRK09857 putative transposase; Provisional
Probab=40.52 E-value=2e+02 Score=26.06 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
.++.-....++.++..++++.+.+.. | ......-++..-+.+.|.-+++.++.++|+..|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~--~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS--P-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC--c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34443344555555555555555431 1 1223333455555566666667777777777775443
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.44 E-value=1.7e+02 Score=25.64 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEK----EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
....+..-|.+.|++++|.++|+.+.. +|. ..+...+...+..++.+.|+.+..+.+--++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566677777777777777776642 221 2344555666777777777777776665444
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.35 E-value=1.6e+02 Score=28.17 Aligned_cols=175 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------------------------------
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE----------------------------------- 319 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------------------------- 319 (475)
+.+..-+...|.++.|++++++ +.|+.--...-..++..|...
T Consensus 122 S~laadhvAAGsFetAm~LLnr--QiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~ 199 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNR--QIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPL 199 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHH--HC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB---
T ss_pred CCcHHHHHHhCCHHHHHHHHHH--HhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcC
Q ss_pred ------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 320 ------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 320 ------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
|++.+|...|+.++ +...+.......+.+++.+++....+. ....
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrEY-------ilgl 262 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICREY-------ILGL 262 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHHH-------HHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHHH-------HHHH
Q ss_pred HHHHHHhc------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 382 MIRELCLG------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 382 li~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
-|..-.+. .+..+..++--.+-.-.+.|..-..+...-+....+.+++..|..+.+++++.+..+....-..=+
T Consensus 263 ~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKi 342 (422)
T PF06957_consen 263 SIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKI 342 (422)
T ss_dssp HHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHH
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHhHHh
Q 011919 456 EHLKKSGDEELIT 468 (475)
Q Consensus 456 ~~~~~~g~~~~a~ 468 (475)
...+...-.+...
T Consensus 343 l~~~e~~~tDa~~ 355 (422)
T PF06957_consen 343 LQACERNPTDAHE 355 (422)
T ss_dssp HHHHCCS--BSS-
T ss_pred HHHHhcCCCCcee
No 449
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.26 E-value=2.9e+02 Score=25.16 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 287 MKEALGILDRMEALGC----APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++...... +..-...++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788887776422 3344555566666677777666555555555432 45557778888888888888888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH----HHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 363 LFSKMLASG-VKPDGLACSVMIRELCLGGQV--LEGFCLYE----DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 363 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
+++.....+ +++.. ...++.++...+.. +.+.+.+. .+.+.- .. +......++..+...-..++-.+-
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~-~~--~~~~~~~~~~~~~~~~~t~~~~~~ 297 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKF-GT--NSSALSRVIKSFAGNFSTEEQLDE 297 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC--T--TSHCCHHHHHCCCTT--SHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh-cC--CChHHHHHHHHHhccCCCHHHHHH
Confidence 888887753 43332 34444455533333 55555544 333321 11 122455555554443333344444
Q ss_pred HHHHH
Q 011919 436 ARFML 440 (475)
Q Consensus 436 ~~~m~ 440 (475)
++++.
T Consensus 298 ~~~f~ 302 (324)
T PF11838_consen 298 LEEFF 302 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.08 E-value=1.6e+02 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEA----LG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
..-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334567778888999999998888742 22 23345566777788888888888777655543
No 451
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.98 E-value=51 Score=24.95 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011919 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
..++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-...
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 34555556666667788888888888877788877777888887775443
No 452
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.92 E-value=4.4e+02 Score=27.18 Aligned_cols=343 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 011919 79 RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 158 (475)
++-......++.+.....-....+.+.+.+++..... +.. ..+.+...-.....+....|+.++|......+=..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------
Q 011919 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--------- 229 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------- 229 (475)
| .......+.++..+.+.|...... ++.+|...-...+...-..+.... ..+.....+.+..+.+..
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l--~~~~~~~a~a~~al~~~p~~~~~~~~~ 234 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQL--PADYQTIASALIKLQNDPNTVETFART 234 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhc--ChhHHHHHHHHHHHHHCHHHHHHHhhc
Q ss_pred CCcCHHHHHHHHHHHHhc--CChHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 230 CAANLVAYSALLDGICRL--GSMERALELLGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
++++...-..++.++.+. .+.+.|...+... .............+..+.......+..+++...++..... ..+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCc
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCC-
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------GVK- 373 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------~~~- 373 (475)
.....-+......++++.+...+..| ..+..-...-..-+..++...|+.++|...|+++... |..
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L-~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~ 391 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARL-PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEY 391 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhc-CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCC
Q ss_pred -------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 374 -------------PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 374 -------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.....-..-+..+...|+...|...|..+.+.. +......+.....+.|.++.++.....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~-----~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 392 PLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR-----SKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCHHHHHHHHhh
No 453
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.76 E-value=1.5e+02 Score=21.85 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=7.7
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 011919 241 LDGICRLGSMERALELLGE 259 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~ 259 (475)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3334444444444444443
No 454
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.64 E-value=1.5e+02 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc
Q 011919 134 VIFNLCEKARLANEAMWVLRKMP 156 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~ 156 (475)
.++.-|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34555666677777777776653
No 455
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.50 E-value=4.9e+02 Score=27.59 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=118.8
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDII-------TYVSMIK-GFCNAGRLEDACGLFKVMKRH----GCAANLVAYSALLD 242 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~ 242 (475)
....++.+|..++.++...-..|+.. .++.+-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888888888764432222221 3343332 233568899999888876653 22345566777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH-----HHHHhcCCHH--HHHHHHHHHHHc-----CC-CCCHHHH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI-----QIFCGKGMMK--EALGILDRMEAL-----GC-APNRVTI 309 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~--~a~~~~~~m~~~-----~~-~p~~~~~ 309 (475)
+..-.|++++|..+..+..+.. -.-++..+..+. ..+...|+.. +....|...... .. .+-..++
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888999999999888776531 122333333222 2344556332 222333332221 10 1122344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 011919 310 STLIKGFCVE-GNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLKEAEKLFSKMLASGV----KPDGLACSVM 382 (475)
Q Consensus 310 ~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l 382 (475)
..+..++.+. +...++..-++--......|-... +..|+......|+.++|...+.++..... .++..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555541 112222222222222222222222 23677888899999999999888875322 2233322223
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 011919 383 IRE--LCLGGQVLEGFCLYED 401 (475)
Q Consensus 383 i~~--~~~~g~~~~a~~~~~~ 401 (475)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 322 3456777777666554
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.23 E-value=1.8e+02 Score=22.37 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 431 EAAKLARFMLKKRIWLQ-GPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
++.++|..|..+|+... +..|......+...|+++.|.++.+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55566666665555433 23445555555666666666655543
No 457
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.64 E-value=1.6e+02 Score=21.85 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
.++|..+.+.+...+. ....+--+-+..+.+.|++++|+..=..... ||...|-++-. .+.|-.+++...+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~------pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCY------PDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--------GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCC------ccHHHHHHHHH--HhhccHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHH
Q 011919 295 DRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~ 314 (475)
.++..+| .|....|..=++
T Consensus 93 ~rla~~g-~~~~q~Fa~~~~ 111 (116)
T PF09477_consen 93 TRLASSG-SPELQAFAAGFR 111 (116)
T ss_dssp HHHCT-S-SHHHHHHHHHHH
T ss_pred HHHHhCC-CHHHHHHHHHHH
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.54 E-value=2.9e+02 Score=25.55 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 209 (475)
-|-.+++.....|.++.++.+|++....|..|-...-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 35555555555666666666666666655555555444444443
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.38 E-value=4.8e+02 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
....|..+-..+-+.|+.++|...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHh
Confidence 334455555555555555555543
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.54 E-value=5.5e+02 Score=27.32 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=67.8
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCC
Q 011919 352 VRTKRLKEAEKLFSKMLAS------GVKPDGLACSVMIRELC---------------LGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~---------------~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
...|++.+|.+.|+..+-. .-+-+..-...++..|+ ..+..+.+.++-..+....+.|.
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3578999999999887532 01122222333333331 12345555555555555566665
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHH
Q 011919 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY-VDKIVEHLK 459 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~ 459 (475)
-...+....+..+.+.+++..|..+-+++++.+..|+..- .+.+..+..
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Confidence 4566777888999999999999999999999885555443 344444443
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.42 E-value=2.6e+02 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
..+.++..+...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455566666666666666666666543
No 462
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.35 E-value=2.9e+02 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011919 281 FCGKGMMKEALGILDRME 298 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~ 298 (475)
|.+.+++.+|.+.++...
T Consensus 83 cykk~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAI 100 (288)
T ss_pred HhhccChHHHHHHHHHHH
Confidence 344446666666655443
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.14 E-value=4e+02 Score=25.58 Aligned_cols=30 Identities=27% Similarity=0.170 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+.+.|+.++..|.+.|..|....-..++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466777777777777777665543333333
No 464
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.75 E-value=1.1e+02 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..++.+.|++++|.+..+.+++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4445566666666666666666654
No 465
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.63 E-value=38 Score=30.93 Aligned_cols=92 Identities=17% Similarity=0.030 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI-ITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 220 (475)
.|.++.|++.|...++.+ ++....|..-.+++.+.+++..|++=++..... .||. .-|-.--.+..-.|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 567899999998888765 456667777778888888888888877766653 3333 233333344455788888888
Q ss_pred HHHHHHHCCCCcCHHH
Q 011919 221 LFKVMKRHGCAANLVA 236 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~ 236 (475)
.++...+.++.+....
T Consensus 204 dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHhccccHHHHH
Confidence 8888888766554433
No 466
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.16 E-value=2.7e+02 Score=23.35 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGS--------------VSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
++..|-+.-++.++.++++.|.+..+ .+.-..-|.....|.+.|.+|.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 44455555556666666665554321 1112334555566666666666666665
No 467
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.92 E-value=3.1e+02 Score=28.45 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-------------CHhhHHHH
Q 011919 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-------------DTIIYNNV 170 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l 170 (475)
+..-...+....+-..+.+.|+..+......++... .|+...|+.+++++...|-.. +......|
T Consensus 175 f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~L 252 (709)
T PRK08691 175 LRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYEL 252 (709)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (475)
+.++.+ ++...++.+++++...|+.+....-..+
T Consensus 253 ldAL~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 253 LTGIIN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 468
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=34.68 E-value=4.2e+02 Score=25.42 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
..+.||..+.+.+...++..-..+-...+|+-..+.+
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3566776666666666655556666666666666654
No 469
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.66 E-value=3.6e+02 Score=26.82 Aligned_cols=36 Identities=6% Similarity=0.125 Sum_probs=22.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
++......++.++.. ++.+.+..+++++...|..|.
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 344444445555443 677777778888877776654
No 470
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.34 E-value=1.6e+02 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=12.3
Q ss_pred HHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011919 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 147 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 35 sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444444333333333333333333333
No 471
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=34.31 E-value=3.3e+02 Score=24.90 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 011919 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189 (475)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 189 (475)
.+....+-....+.|+..|...+..++.. ..|+..+|+.+++.+...|-.-+...-+-.+.
T Consensus 191 ~~iv~rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~----------------- 251 (346)
T KOG0989|consen 191 EDIVDRLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELA----------------- 251 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHh-----------------
Confidence 33444444455667778888877766554 35778888888877765443223222222221
Q ss_pred hccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
|+.|+...-..+ -.+..+++.+..+..+++.+.|..|
T Consensus 252 ----GvVp~~~l~~ll--e~a~S~d~~~~v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 252 ----GVVPDEKLLDLL--ELALSADTPNTVKRVREIMRSGYSP 288 (346)
T ss_pred ----ccCCHHHHHHHH--HHHHccChHHHHHHHHHHHHhccCH
Confidence 333333322211 2235677777777777777777653
No 472
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.12 E-value=4.6e+02 Score=25.73 Aligned_cols=94 Identities=7% Similarity=0.025 Sum_probs=65.4
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHc-CCCCCh
Q 011919 373 KPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR--KNHSVEAAKLARFMLKK-RIWLQG 448 (475)
Q Consensus 373 ~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-~~~~~~ 448 (475)
.|+..|+. .++.-+.+.|-..+|+..+..+... |+++...|..+|..-.. .-+..-+.++++.|... | .|+
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l---pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~ 530 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL---PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADS 530 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC---CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CCh
Confidence 55555543 4566667788888999999888874 45677888887765332 23477778888888764 5 777
Q ss_pred hhHHHHHHHHHhcCCHhHHhhcc
Q 011919 449 PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..|...+.--...|..+.+-.+.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHH
Confidence 78877777777777776665443
No 473
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.02 E-value=3.5e+02 Score=24.23 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHhCCC
Q 011919 321 NLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~ 337 (475)
+.++|...|...-+.|.
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 45555555555555543
No 474
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.01 E-value=2.2e+02 Score=21.94 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 225 (475)
++.+.+.++.-....+..+=..|.+-.+..||-.+|+-+
T Consensus 86 l~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 86 LQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 334444443333334444444555555666666666654
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.18 E-value=74 Score=21.72 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=18.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
-.|+.+.+.+++++..+.|.++.....+.+..+..+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455566666666666555545444444344444333
No 476
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=33.15 E-value=5e+02 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
...-.++.+.. .|+..+|+.+++++...|..|.
T Consensus 259 ~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 259 SVIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33344455443 4788888888888888886654
No 477
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.04 E-value=3.9e+02 Score=24.56 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR---TKRLKEAEKLF 364 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~ 364 (475)
+.-+.++++..+.+ +-+.......|..+.+..+.+...+.|+++...... +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455566655552 234455556666666666666666667766665432 34455555544433 22344555544
Q ss_pred HHHHHC------CC------CCC--HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 365 SKMLAS------GV------KPD--GLA---CSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 365 ~~m~~~------~~------~p~--~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
.+.++. +. .++ ... +..+..-+.++|-.+.|..+++.+.+.++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 443321 11 011 111 222223345678888888888888887653
No 478
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.65 E-value=3.2e+02 Score=23.39 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 393 LEGFCLYEDIEKIGFLSS---VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|.+.|.+..+....|. .+..+.-.+.....+.|+.++|.+.|.+.+..+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345666666665433221 122333345555667889999999988888765
No 479
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.46 E-value=1.5e+02 Score=19.43 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=4.8
Q ss_pred CCHHHHHHHHHHH
Q 011919 320 GNLDEAYQLIDKV 332 (475)
Q Consensus 320 g~~~~a~~~~~~~ 332 (475)
|++=+|-++++.+
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333444444433
No 480
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.08 E-value=2.2e+02 Score=24.95 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------CC-----------CCch
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF------------LS-----------SVDS 413 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------~~-----------~~~~ 413 (475)
+++|..+++..... ..+..+...+.-++...|+...+.++++.+.+... .+ ..++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555556554332 34556655555667777778888888887765310 00 0123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++=...+.++.+.++.+.+..+.+-+.++
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44444455666779999999999988875
No 481
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.99 E-value=5.6e+02 Score=26.24 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-------------CCHhhHHHH
Q 011919 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR-------------PDTIIYNNV 170 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~l 170 (475)
+......+....+-+.+.+.|+..+......++. ...|+...++.++++....+-. .+......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 209 (475)
+.++.. |+...++++++++...| ..-...+..|+..+
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G-~~~~~il~~l~~~~ 294 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNG-LSAASTLEEMAAVL 294 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
No 482
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.33 E-value=5.4e+02 Score=25.63 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
++.-|.+.+++++|..++..|. ......--...+.+++.+.+..--++.+..++.+...=..|....-......|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
=.+-|+++|..+.+.+- |..........|+.|--+++...+...|
T Consensus 493 V~~~aRRfFhhLLR~~r--------fekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQR--------FEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhhH--------HHHHHHHHHhccchHHHHHHHHHHHhcc
No 483
>PRK10941 hypothetical protein; Provisional
Probab=30.17 E-value=4e+02 Score=23.80 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
.+.+-.+|.+.++++.|++..+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455567777888888888888777764 224555555566677788888887777777654
No 484
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.81 E-value=5.2e+02 Score=24.99 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...|+.-|...|++.+|.+..+++-- ..-....++.+++.+.-+.|+-...+.++++.-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm---PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM---PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC---CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45677778888888888776655432 111245667788888888888777777776665444
No 485
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.79 E-value=3.7e+02 Score=26.72 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=46.5
Q ss_pred hHHHHHHhhcCCCcHHHhhhhccCCCCHHHHHHHHhhhC-----CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 011919 32 AERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCF-----PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106 (475)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 106 (475)
-..+.++|...|..+.-.+....+.=-|. .++.||. .=+.+.-...+.....+.+...+...+..+.+. .
T Consensus 136 fNALLKTLEEPP~hV~FIlATTe~~Kip~---TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a 210 (515)
T COG2812 136 FNALLKTLEEPPSHVKFILATTEPQKIPN---TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--A 210 (515)
T ss_pred HHHHhcccccCccCeEEEEecCCcCcCch---hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--c
Confidence 34556666665554444443333321122 2555551 223344445566666677777777766554443 3
Q ss_pred cCChhHHHHHHHHHHhcC
Q 011919 107 KQNPSIIIDVVEAYKEEG 124 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~ 124 (475)
.|....+..+++++...|
T Consensus 211 ~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 211 EGSLRDALSLLDQAIAFG 228 (515)
T ss_pred CCChhhHHHHHHHHHHcc
Confidence 456667777777766654
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.55 E-value=1.4e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
-.|.++++.+.+.+...+..|....++.+...|
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 334444444444433333333333333444333
No 487
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=28.90 E-value=2.5e+02 Score=23.63 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+.+.....++.-|...|+.+..+++.-.+--... | .+.++..|-+.|-++.-+-++.+....=+.|=...+..
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~L----D---idq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~~ 92 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLDPSSL----D---IDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLEL 92 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhc----C---HHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHHH
Confidence 3446677777777777777776666554443221 2 35566666667777766666666554444444444443
Q ss_pred HH
Q 011919 454 IV 455 (475)
Q Consensus 454 l~ 455 (475)
+.
T Consensus 93 i~ 94 (196)
T PF12816_consen 93 IR 94 (196)
T ss_pred HH
Confidence 33
No 488
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.78 E-value=2.1e+02 Score=20.22 Aligned_cols=42 Identities=7% Similarity=0.194 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
++|+-....|+..|...|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555444444444445554443
No 489
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=28.35 E-value=2.6e+02 Score=21.07 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
.+..+++.+.+.|+.-|.......+......+. .....+-.++.+.|+
T Consensus 10 ~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi 57 (121)
T PF02631_consen 10 AIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGI 57 (121)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCC
Confidence 344455555555555444433444444433111 123334444444554
No 490
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.25 E-value=47 Score=30.33 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a 395 (475)
...|.++.|++.|...+..... ....|..=..++.+.+++..|++=+....+. .||. ..|-.=-.+-...|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 4567777777777777665432 3444555556677777777777777766643 4442 2232222333446778888
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
...+....+.++.+ .+=..+=...-+.+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE----~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDE----ANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccH----HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 88877777776533 2222233333344444444444444443
No 491
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.24 E-value=1.6e+02 Score=28.42 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVM-IRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~ 404 (475)
..+.++.|..++.+.++. .||-..|-.. ..++.+.+++..|+.-+..+.+
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334444455554444433 3332222111 1334444444444444444444
No 492
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.19 E-value=4.4e+02 Score=23.57 Aligned_cols=25 Identities=4% Similarity=-0.203 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 428 HSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+...|...+......+.+.......
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6667777777777777555544444
No 493
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=28.19 E-value=77 Score=19.17 Aligned_cols=39 Identities=3% Similarity=-0.052 Sum_probs=22.6
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011919 82 IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 120 (475)
.|+.....|+.....+..+.+.+...+.....++++++.
T Consensus 3 ~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~a 41 (46)
T PF06855_consen 3 NDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRA 41 (46)
T ss_dssp HHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHH
T ss_pred hhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 455566667766666777666666665555555555543
No 494
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.33 E-value=4.2e+02 Score=23.09 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KGMMKEALGILDRME 298 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~ 298 (475)
-++..+-+.|+++++.+.++++...+ ...+..-.+.+-.+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMN--PELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 35566667777777777777777742 23445555555555422 344445555555444
No 495
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=27.26 E-value=3.5e+02 Score=22.23 Aligned_cols=109 Identities=11% Similarity=0.025 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+++..+.+.|..-|...-...+..-.+.| ..-..+..++...|+ +..+....+..+......+.|..++..-...
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~ 130 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKR 130 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCc
Confidence 344444444454444443333333333333 233445555555653 3344444444444445555555555544443
Q ss_pred CCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 011919 406 GFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFM 439 (475)
Q Consensus 406 ~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 439 (475)
...| ++..-...+...+.+.| .++.+..++..+
T Consensus 131 ~~~~-~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 131 ENKP-PDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cccC-cchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3222 23333334444444444 334444444433
No 496
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.41 E-value=2.3e+02 Score=19.73 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=17.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (475)
..+.++.-.++|+++++-+.++| ..+...
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 34455566677777777777766 444433
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.38 E-value=5.3e+02 Score=23.97 Aligned_cols=44 Identities=9% Similarity=-0.125 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.|-++.......|.++.++.+|++++..|-.|-...-..+++.+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444444444443
No 498
>PLN03025 replication factor C subunit; Provisional
Probab=26.13 E-value=5.1e+02 Score=23.70 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=19.2
Q ss_pred HHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 011919 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 153 (475)
+.+.|+..+......++..+ .|+...|+..++
T Consensus 171 ~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq 202 (319)
T PLN03025 171 VEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQ 202 (319)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 34456666666666665543 466666666665
No 499
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.12 E-value=5.6e+02 Score=24.11 Aligned_cols=57 Identities=16% Similarity=0.003 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~ 404 (475)
|..+.+.|-+..|.++.+-+...+..-|+.....+|..| .+.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445667777777777777777655444555555556554 355667666666666544
No 500
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.11 E-value=6.6e+02 Score=25.01 Aligned_cols=35 Identities=0% Similarity=-0.100 Sum_probs=23.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 198 (475)
+......++.++. .|+.+.++++++++...|..|.
T Consensus 245 ~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 4444455665544 3778888888888888776554
Done!