Query 011919
Match_columns 475
No_of_seqs 623 out of 3082
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.4E-33 8.3E-38 280.6 44.3 401 59-472 84-574 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-32 5.5E-37 274.6 41.2 368 92-472 82-540 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-31 3.5E-36 258.7 30.3 206 146-353 7-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.3E-32 1.8E-36 260.7 23.9 204 218-425 9-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-26 5.4E-31 218.5 46.5 377 71-463 12-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 8.7E-27 3E-31 220.2 41.8 358 101-472 6-363 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.1E-22 3.6E-27 196.1 39.5 366 92-469 24-446 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 6.5E-23 2.2E-27 197.6 36.7 319 126-458 23-373 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4E-27 199.2 35.3 359 70-443 18-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.1E-21 3.8E-26 192.2 35.7 366 95-472 7-473 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.1E-20 7.1E-25 184.2 38.1 385 70-471 37-485 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 6.6E-20 2.3E-24 170.6 37.4 319 131-462 5-354 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 4E-23 162.1 38.4 318 94-424 3-351 (359)
14 3hym_B Cell division cycle pro 99.9 1.9E-19 6.5E-24 165.5 32.6 295 161-466 19-323 (330)
15 3fp2_A TPR repeat-containing p 99.9 1.5E-18 5.1E-23 170.9 40.6 356 70-443 71-492 (537)
16 1fch_A Peroxisomal targeting s 99.9 3.2E-19 1.1E-23 166.9 29.1 287 178-473 39-355 (368)
17 3hym_B Cell division cycle pro 99.9 1E-18 3.5E-23 160.6 30.7 294 126-430 19-322 (330)
18 2xm6_A Protein corresponding t 99.8 6.7E-16 2.3E-20 150.1 48.0 338 71-443 56-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.6E-23 162.0 27.9 293 141-440 37-357 (368)
20 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4.1E-23 162.8 24.4 265 198-472 64-351 (365)
21 4eqf_A PEX5-related protein; a 99.8 2.4E-18 8.3E-23 160.7 24.4 269 162-438 63-352 (365)
22 2ooe_A Cleavage stimulation fa 99.8 1.6E-15 5.6E-20 148.9 43.4 403 58-472 12-487 (530)
23 2xm6_A Protein corresponding t 99.8 3.9E-15 1.3E-19 144.7 45.6 347 93-473 38-428 (490)
24 3cv0_A Peroxisome targeting si 99.8 5.6E-17 1.9E-21 148.7 28.0 277 165-473 22-311 (327)
25 3cv0_A Peroxisome targeting si 99.8 3.8E-17 1.3E-21 149.9 25.3 283 128-440 20-313 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 1.8E-16 6.2E-21 142.5 28.1 252 138-405 8-264 (291)
27 1b89_A Protein (clathrin heavy 99.8 5.9E-18 2E-22 155.8 18.1 218 108-368 17-234 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 4.9E-16 1.7E-20 139.7 29.2 252 173-443 8-265 (291)
29 3spa_A Mtrpol, DNA-directed RN 99.8 9.5E-19 3.3E-23 173.6 10.4 154 232-390 125-286 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-18 5E-23 172.3 10.7 151 163-320 126-286 (1134)
31 2ooe_A Cleavage stimulation fa 99.8 1.6E-14 5.3E-19 141.9 38.8 371 92-473 11-450 (530)
32 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.9E-22 153.2 15.3 282 141-470 15-304 (449)
33 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.8E-18 142.1 42.4 345 56-462 982-1328(1630)
34 4g1t_A Interferon-induced prot 99.7 3.1E-14 1.1E-18 137.7 37.2 361 91-472 48-454 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.2E-12 4E-17 134.7 44.1 309 107-462 1089-1415(1630)
36 3uq3_A Heat shock protein STI1 99.7 8.5E-15 2.9E-19 129.2 24.7 228 200-443 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 3.1E-14 1.1E-18 125.5 24.6 222 131-368 7-234 (258)
38 2pl2_A Hypothetical conserved 99.7 2.2E-14 7.4E-19 123.2 22.2 196 234-439 5-211 (217)
39 2pl2_A Hypothetical conserved 99.7 1.8E-14 6.1E-19 123.7 21.7 197 162-366 3-210 (217)
40 4g1t_A Interferon-induced prot 99.7 3.1E-13 1.1E-17 130.6 33.1 353 70-443 63-460 (472)
41 1ouv_A Conserved hypothetical 99.6 9.1E-13 3.1E-17 117.4 32.0 222 200-443 7-252 (273)
42 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.9E-18 122.4 26.5 252 202-458 6-265 (272)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.7E-13 1.6E-17 117.7 27.4 201 235-443 38-239 (252)
44 2vq2_A PILW, putative fimbrial 99.6 3.5E-13 1.2E-17 116.0 25.3 200 165-368 9-209 (225)
45 2ho1_A Type 4 fimbrial biogene 99.6 5.9E-13 2E-17 117.0 27.1 202 164-370 37-238 (252)
46 3u4t_A TPR repeat-containing p 99.6 2.2E-13 7.7E-18 121.2 24.5 194 132-333 6-206 (272)
47 2q7f_A YRRB protein; TPR, prot 99.6 9.5E-14 3.3E-18 121.3 21.6 210 234-453 23-232 (243)
48 1ouv_A Conserved hypothetical 99.6 2E-12 6.9E-17 115.2 30.6 219 233-473 5-247 (273)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-14 1.1E-18 126.7 18.4 196 202-405 46-244 (275)
50 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.4E-17 112.4 27.7 203 234-443 8-212 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.5E-18 126.0 18.6 245 143-399 19-269 (275)
52 2h6f_A Protein farnesyltransfe 99.6 3.5E-13 1.2E-17 125.3 24.5 197 164-367 97-302 (382)
53 2h6f_A Protein farnesyltransfe 99.6 5.1E-13 1.7E-17 124.2 24.9 233 128-369 96-347 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 3.1E-13 1.1E-17 118.0 20.7 196 166-368 25-220 (243)
55 4a1s_A PINS, partner of inscut 99.5 2.3E-13 7.8E-18 129.0 19.4 136 308-443 225-373 (411)
56 3sf4_A G-protein-signaling mod 99.5 2.5E-13 8.7E-18 128.3 19.6 299 165-464 10-363 (406)
57 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4.2E-17 125.3 24.0 340 71-444 16-389 (452)
58 3e4b_A ALGK; tetratricopeptide 99.5 7.1E-13 2.4E-17 127.0 22.0 156 201-371 178-352 (452)
59 3ro2_A PINS homolog, G-protein 99.5 6.4E-13 2.2E-17 121.8 18.9 272 171-443 12-333 (338)
60 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 126.2 18.6 266 207-473 56-368 (411)
61 3sf4_A G-protein-signaling mod 99.5 7.1E-13 2.4E-17 125.2 18.8 301 128-430 8-364 (406)
62 3nf1_A KLC 1, kinesin light ch 99.5 5.9E-13 2E-17 120.8 15.0 205 235-442 70-307 (311)
63 2ond_A Cleavage stimulation fa 99.5 4.5E-11 1.5E-15 108.4 27.3 217 146-369 33-269 (308)
64 2ond_A Cleavage stimulation fa 99.5 9.2E-11 3.1E-15 106.4 29.3 220 216-443 33-271 (308)
65 3ulq_A Response regulator aspa 99.5 3.2E-11 1.1E-15 113.1 26.5 299 138-442 21-368 (383)
66 3ro2_A PINS homolog, G-protein 99.5 2.9E-12 9.9E-17 117.4 18.6 133 273-405 185-332 (338)
67 4abn_A Tetratricopeptide repea 99.4 7.5E-12 2.6E-16 120.6 20.8 195 233-436 101-315 (474)
68 3ulq_A Response regulator aspa 99.4 1.9E-11 6.5E-16 114.6 22.6 298 174-473 22-364 (383)
69 4abn_A Tetratricopeptide repea 99.4 1.6E-11 5.5E-16 118.3 22.3 215 249-471 83-315 (474)
70 3vtx_A MAMA; tetratricopeptide 99.4 5.8E-11 2E-15 98.7 22.8 164 200-369 6-169 (184)
71 3vtx_A MAMA; tetratricopeptide 99.4 5.3E-11 1.8E-15 99.0 22.5 166 163-334 4-169 (184)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-11 4.1E-16 112.1 18.4 240 165-405 28-307 (311)
73 4e6h_A MRNA 3'-END-processing 99.4 4.3E-09 1.5E-13 104.5 36.7 406 57-472 64-565 (679)
74 3q15_A PSP28, response regulat 99.4 3.1E-10 1.1E-14 106.1 26.7 232 205-441 107-364 (378)
75 1hz4_A MALT regulatory protein 99.4 5.8E-10 2E-14 104.0 28.0 298 136-443 21-350 (373)
76 1hz4_A MALT regulatory protein 99.4 4.8E-10 1.6E-14 104.6 26.8 298 167-464 17-352 (373)
77 3as5_A MAMA; tetratricopeptide 99.4 1.9E-10 6.4E-15 95.3 21.4 162 131-298 10-171 (186)
78 3q15_A PSP28, response regulat 99.4 2.8E-10 9.7E-15 106.4 24.8 232 238-473 105-361 (378)
79 4e6h_A MRNA 3'-END-processing 99.4 1.9E-08 6.7E-13 99.8 38.8 376 74-456 119-582 (679)
80 3as5_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 93.8 21.7 164 165-334 9-172 (186)
81 3edt_B KLC 2, kinesin light ch 99.3 8.6E-11 2.9E-15 104.7 16.3 208 234-442 43-281 (283)
82 4i17_A Hypothetical protein; T 99.3 8.3E-10 2.8E-14 95.2 22.0 208 232-456 5-222 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.3 4.5E-10 1.5E-14 112.7 21.3 165 270-440 8-172 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.2 2.4E-10 8.4E-15 114.7 18.9 166 128-299 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 8.5E-11 2.9E-15 104.7 13.9 137 163-299 42-197 (283)
86 4i17_A Hypothetical protein; T 99.2 2E-09 6.9E-14 92.7 20.5 198 127-337 5-211 (228)
87 3qky_A Outer membrane assembly 99.2 7.6E-09 2.6E-13 91.1 21.9 91 380-471 152-255 (261)
88 3mv2_B Coatomer subunit epsilo 99.1 2.2E-08 7.5E-13 88.4 22.6 243 139-406 23-283 (310)
89 3mv2_B Coatomer subunit epsilo 99.1 6.2E-08 2.1E-12 85.6 24.9 183 183-376 85-286 (310)
90 2fo7_A Synthetic consensus TPR 99.1 9.3E-09 3.2E-13 79.9 17.2 126 168-298 5-130 (136)
91 1qqe_A Vesicular transport pro 99.1 1.1E-08 3.8E-13 91.8 19.1 140 145-299 33-186 (292)
92 3qky_A Outer membrane assembly 99.1 1.6E-08 5.4E-13 89.1 19.7 100 163-263 14-126 (261)
93 1qqe_A Vesicular transport pro 99.0 1.4E-08 4.7E-13 91.1 19.0 175 179-368 32-226 (292)
94 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.5E-13 77.7 17.8 128 202-334 4-131 (136)
95 2uy1_A Cleavage stimulation fa 99.0 5.2E-07 1.8E-11 86.8 29.1 354 94-472 15-408 (493)
96 3urz_A Uncharacterized protein 99.0 6E-08 2.1E-12 82.1 18.2 131 240-378 60-192 (208)
97 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.2E-07 7.5E-12 79.7 21.8 209 199-443 4-214 (225)
98 4ga2_A E3 SUMO-protein ligase 98.9 6.2E-09 2.1E-13 83.1 11.1 144 314-463 5-149 (150)
99 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-07 5.2E-12 79.8 20.4 160 273-443 20-198 (212)
100 3urz_A Uncharacterized protein 98.9 5.5E-08 1.9E-12 82.3 17.5 126 205-336 60-187 (208)
101 3rjv_A Putative SEL1 repeat pr 98.9 2E-07 6.9E-12 79.0 20.6 20 207-226 26-45 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.2E-07 7.7E-12 79.6 20.9 203 163-406 3-214 (225)
103 2pzi_A Probable serine/threoni 98.9 4.3E-08 1.5E-12 98.7 18.7 174 175-356 402-583 (681)
104 2r5s_A Uncharacterized protein 98.9 2.8E-08 9.7E-13 81.6 14.4 161 132-297 9-170 (176)
105 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.8E-11 77.1 26.7 231 216-453 50-298 (306)
106 3dra_A Protein farnesyltransfe 98.9 1.2E-06 4E-11 78.1 25.5 221 107-334 46-286 (306)
107 3qou_A Protein YBBN; thioredox 98.9 5.1E-08 1.8E-12 87.1 16.7 167 127-298 115-282 (287)
108 2pzi_A Probable serine/threoni 98.9 1.6E-07 5.4E-12 94.6 21.6 173 210-391 402-583 (681)
109 2r5s_A Uncharacterized protein 98.9 5E-08 1.7E-12 80.1 14.8 162 166-333 8-171 (176)
110 3qou_A Protein YBBN; thioredox 98.9 4.7E-08 1.6E-12 87.3 15.5 156 307-468 118-275 (287)
111 4ga2_A E3 SUMO-protein ligase 98.9 1.2E-08 4.1E-13 81.4 10.4 139 141-285 9-148 (150)
112 2vsy_A XCC0866; transferase, g 98.9 7.8E-08 2.7E-12 95.0 18.0 152 108-263 3-157 (568)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 6.3E-08 2.1E-12 87.5 15.8 200 177-403 4-222 (307)
114 2vsy_A XCC0866; transferase, g 98.9 1.1E-07 3.8E-12 93.9 18.9 154 247-406 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 8.2E-08 2.8E-12 86.7 15.1 185 208-397 45-253 (307)
116 3u3w_A Transcriptional activat 98.8 2.9E-06 1E-10 75.9 23.1 97 344-441 158-265 (293)
117 3u3w_A Transcriptional activat 98.7 4.7E-06 1.6E-10 74.5 24.1 163 241-404 82-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.9E-07 3.1E-11 74.9 18.3 129 272-405 7-150 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4E-11 74.2 18.8 129 167-300 9-150 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 5.9E-06 2E-10 73.9 24.2 169 273-441 77-265 (293)
121 3q7a_A Farnesyltransferase alp 98.7 1.6E-05 5.5E-10 71.7 26.1 177 103-286 63-257 (349)
122 4gco_A Protein STI-1; structur 98.7 7.5E-07 2.6E-11 68.4 14.9 110 342-456 14-123 (126)
123 1na0_A Designed protein CTPR3; 98.7 1.1E-06 3.7E-11 66.8 15.9 116 341-461 9-124 (125)
124 2vyi_A SGTA protein; chaperone 98.7 1E-06 3.5E-11 67.6 15.1 119 341-464 12-130 (131)
125 2uy1_A Cleavage stimulation fa 98.7 4E-05 1.4E-09 73.7 29.2 344 72-441 28-412 (493)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 2.8E-06 9.6E-11 76.0 19.5 169 130-298 76-264 (293)
127 2lni_A Stress-induced-phosphop 98.6 1E-06 3.5E-11 68.0 14.5 118 340-462 15-132 (133)
128 1a17_A Serine/threonine protei 98.6 1.4E-06 4.9E-11 70.2 15.7 94 167-262 16-109 (166)
129 3q7a_A Farnesyltransferase alp 98.6 3.1E-05 1E-09 69.8 25.0 245 177-455 67-344 (349)
130 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.6E-11 65.8 14.4 95 166-262 11-105 (125)
131 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.6E-11 66.4 14.1 94 167-262 16-109 (126)
132 2lni_A Stress-induced-phosphop 98.6 1.9E-06 6.4E-11 66.5 14.4 98 163-262 15-112 (133)
133 1a17_A Serine/threonine protei 98.6 3.2E-06 1.1E-10 68.1 16.3 127 309-440 16-144 (166)
134 3gyz_A Chaperone protein IPGC; 98.6 5.6E-06 1.9E-10 65.6 17.0 103 341-449 36-138 (151)
135 3gw4_A Uncharacterized protein 98.6 1.4E-06 4.6E-11 73.1 14.1 100 343-442 68-176 (203)
136 3gw4_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 73.3 13.9 135 234-368 26-174 (203)
137 2c2l_A CHIP, carboxy terminus 98.6 4E-07 1.4E-11 81.0 11.0 97 164-262 4-100 (281)
138 4f3v_A ESX-1 secretion system 98.5 3.4E-06 1.2E-10 73.5 16.3 190 246-443 18-238 (282)
139 2vyi_A SGTA protein; chaperone 98.5 2.3E-06 7.7E-11 65.6 13.6 94 167-262 15-108 (131)
140 2vgx_A Chaperone SYCD; alterna 98.5 1.1E-06 3.8E-11 69.6 12.0 100 340-443 20-119 (148)
141 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.6E-11 71.4 12.8 121 318-443 22-145 (177)
142 4f3v_A ESX-1 secretion system 98.5 1.9E-06 6.5E-11 75.1 14.2 128 238-370 106-237 (282)
143 3gyz_A Chaperone protein IPGC; 98.5 9.1E-07 3.1E-11 70.2 11.2 98 199-300 36-133 (151)
144 2e2e_A Formate-dependent nitri 98.5 9.7E-07 3.3E-11 72.3 11.6 120 176-300 22-144 (177)
145 2c2l_A CHIP, carboxy terminus 98.5 7.4E-07 2.5E-11 79.2 11.0 97 199-299 4-100 (281)
146 1p5q_A FKBP52, FK506-binding p 98.5 4.1E-06 1.4E-10 76.5 15.7 146 270-440 146-292 (336)
147 1elw_A TPR1-domain of HOP; HOP 98.5 9.2E-06 3.2E-10 60.8 15.0 110 342-456 5-114 (118)
148 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.6E-11 68.6 10.6 93 202-298 24-116 (148)
149 1p5q_A FKBP52, FK506-binding p 98.4 4.2E-06 1.4E-10 76.4 14.7 124 342-469 148-285 (336)
150 3dss_A Geranylgeranyl transfer 98.4 0.00033 1.1E-08 62.8 26.2 81 216-300 91-174 (331)
151 2xcb_A PCRH, regulatory protei 98.4 5.8E-06 2E-10 64.8 13.3 98 342-443 19-116 (142)
152 2dba_A Smooth muscle cell asso 98.4 1.4E-05 4.7E-10 62.8 15.4 112 340-457 27-142 (148)
153 3dss_A Geranylgeranyl transfer 98.4 0.00038 1.3E-08 62.4 25.7 199 250-458 90-319 (331)
154 3q49_B STIP1 homology and U bo 98.4 7.5E-06 2.6E-10 63.5 13.2 99 340-442 8-106 (137)
155 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.5E-10 59.4 14.7 95 166-262 6-100 (118)
156 3upv_A Heat shock protein STI1 98.4 9.9E-06 3.4E-10 61.9 13.4 98 342-443 5-102 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 6.8E-06 2.3E-10 66.3 12.9 97 307-405 12-108 (164)
158 4gcn_A Protein STI-1; structur 98.3 1.5E-05 5.2E-10 61.0 13.7 109 343-454 10-122 (127)
159 2xcb_A PCRH, regulatory protei 98.3 7.3E-06 2.5E-10 64.3 11.9 88 206-297 25-112 (142)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 1.9E-05 6.6E-10 65.8 15.0 124 306-433 38-176 (198)
161 2kck_A TPR repeat; tetratricop 98.3 1.1E-05 3.6E-10 59.8 12.1 94 202-299 9-105 (112)
162 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.8E-10 61.7 12.4 115 342-459 5-123 (131)
163 2kck_A TPR repeat; tetratricop 98.3 1.3E-05 4.4E-10 59.4 12.3 99 163-263 5-106 (112)
164 4b4t_Q 26S proteasome regulato 98.3 3.2E-05 1.1E-09 73.2 18.0 198 207-405 12-245 (434)
165 3upv_A Heat shock protein STI1 98.3 2.9E-05 1E-09 59.2 14.5 93 202-298 7-99 (126)
166 4gcn_A Protein STI-1; structur 98.3 3.1E-05 1.1E-09 59.2 13.8 97 202-299 11-111 (127)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 2.7E-05 9.1E-10 64.9 14.3 148 244-396 14-176 (198)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 1.9E-05 6.5E-10 63.6 12.8 99 163-263 10-108 (164)
169 3q49_B STIP1 homology and U bo 98.2 2.6E-05 8.9E-10 60.4 13.2 95 200-298 10-104 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.5E-10 61.3 11.2 95 167-262 7-107 (131)
171 4b4t_Q 26S proteasome regulato 98.2 9.7E-05 3.3E-09 69.9 19.5 199 171-369 11-244 (434)
172 2dba_A Smooth muscle cell asso 98.2 5.2E-05 1.8E-09 59.4 14.5 97 163-262 27-127 (148)
173 2xev_A YBGF; tetratricopeptide 98.2 5.6E-05 1.9E-09 57.7 14.3 97 345-443 6-106 (129)
174 3ro3_A PINS homolog, G-protein 98.2 1.9E-05 6.6E-10 62.9 11.4 100 343-442 51-158 (164)
175 1hxi_A PEX5, peroxisome target 98.1 2.7E-05 9.3E-10 59.0 11.0 96 344-443 20-115 (121)
176 3k9i_A BH0479 protein; putativ 98.1 5.3E-06 1.8E-10 62.6 7.0 87 354-443 3-91 (117)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.1E-05 1.1E-09 73.9 13.9 134 305-442 267-415 (457)
178 3rkv_A Putative peptidylprolyl 98.1 2.5E-05 8.7E-10 62.7 11.2 97 344-443 14-127 (162)
179 1ihg_A Cyclophilin 40; ppiase 98.1 3.5E-05 1.2E-09 71.2 13.0 91 376-470 273-363 (370)
180 1hxi_A PEX5, peroxisome target 98.1 3E-05 1E-09 58.8 10.5 91 170-262 23-113 (121)
181 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.1E-10 75.9 11.1 88 316-405 16-103 (477)
182 2xev_A YBGF; tetratricopeptide 98.0 0.00017 6E-09 54.9 14.4 91 170-262 8-104 (129)
183 3ro3_A PINS homolog, G-protein 98.0 3.7E-05 1.3E-09 61.2 10.9 95 167-261 12-116 (164)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-05 2.7E-09 71.1 13.8 151 248-404 248-414 (457)
185 3k9i_A BH0479 protein; putativ 98.0 2E-05 6.8E-10 59.3 7.5 85 177-262 3-89 (117)
186 1wao_1 Serine/threonine protei 97.9 3.5E-05 1.2E-09 73.9 10.3 125 274-401 9-135 (477)
187 1ihg_A Cyclophilin 40; ppiase 97.9 0.00011 3.7E-09 67.9 12.7 89 234-326 273-361 (370)
188 1dce_A Protein (RAB geranylger 97.9 0.00073 2.5E-08 66.0 19.0 173 287-466 45-244 (567)
189 2hr2_A Hypothetical protein; a 97.9 0.00024 8.1E-09 55.9 12.2 96 344-442 14-131 (159)
190 3n71_A Histone lysine methyltr 97.9 0.00011 3.6E-09 70.2 12.0 128 315-442 318-464 (490)
191 2l6j_A TPR repeat-containing p 97.9 9.4E-05 3.2E-09 54.6 9.4 92 376-471 4-101 (111)
192 3rkv_A Putative peptidylprolyl 97.8 0.00027 9.3E-09 56.5 12.5 96 166-262 13-125 (162)
193 3n71_A Histone lysine methyltr 97.8 0.00016 5.4E-09 69.1 12.4 89 244-332 319-419 (490)
194 1klx_A Cysteine rich protein B 97.8 0.0008 2.7E-08 52.1 13.6 16 247-262 74-89 (138)
195 1dce_A Protein (RAB geranylger 97.8 0.0015 5E-08 63.9 18.4 174 107-287 42-242 (567)
196 1klx_A Cysteine rich protein B 97.7 0.0006 2E-08 52.8 12.4 111 213-336 9-127 (138)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 8.6E-05 2.9E-09 67.7 8.5 131 306-442 179-328 (338)
198 2hr2_A Hypothetical protein; a 97.7 0.0008 2.7E-08 52.8 12.6 61 236-299 59-130 (159)
199 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00019 6.6E-09 65.4 10.6 95 308-405 232-328 (338)
200 1na3_A Designed protein CTPR2; 97.7 0.00054 1.8E-08 48.2 10.9 81 377-461 10-90 (91)
201 2kat_A Uncharacterized protein 97.5 0.0011 3.8E-08 49.2 11.0 99 360-462 4-103 (115)
202 2kat_A Uncharacterized protein 97.4 0.0011 3.8E-08 49.2 10.0 78 183-262 4-81 (115)
203 1zu2_A Mitochondrial import re 97.4 0.00053 1.8E-08 53.7 8.1 102 353-460 14-136 (158)
204 2l6j_A TPR repeat-containing p 97.4 0.00047 1.6E-08 50.7 7.6 60 167-227 7-66 (111)
205 1na3_A Designed protein CTPR2; 97.4 0.0015 5E-08 45.9 9.6 61 201-262 11-71 (91)
206 3mkq_A Coatomer beta'-subunit; 97.4 0.021 7.1E-07 58.6 21.9 193 209-471 609-806 (814)
207 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.4E-08 47.6 8.8 85 375-462 6-91 (100)
208 1zu2_A Mitochondrial import re 97.2 0.00068 2.3E-08 53.1 5.9 85 142-228 15-120 (158)
209 3ma5_A Tetratricopeptide repea 97.1 0.0018 6.1E-08 46.7 7.8 63 163-226 6-68 (100)
210 3mkq_A Coatomer beta'-subunit; 97.1 0.012 4.1E-07 60.4 16.7 128 137-299 607-735 (814)
211 3qww_A SET and MYND domain-con 97.0 0.005 1.7E-07 57.7 11.1 88 354-441 311-410 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.004 1.4E-07 58.4 10.0 94 348-441 294-399 (429)
213 2kc7_A BFR218_protein; tetratr 96.7 0.017 5.8E-07 41.1 10.1 56 349-405 8-64 (99)
214 3qww_A SET and MYND domain-con 96.7 0.0067 2.3E-07 56.8 9.6 63 235-297 341-408 (433)
215 3ly7_A Transcriptional activat 96.6 0.039 1.3E-06 49.7 13.4 63 233-299 276-338 (372)
216 1wy6_A Hypothetical protein ST 96.6 0.14 4.9E-06 38.2 14.8 64 343-407 93-156 (172)
217 3bee_A Putative YFRE protein; 96.6 0.037 1.3E-06 39.0 10.7 67 374-443 4-73 (93)
218 3qwp_A SET and MYND domain-con 96.5 0.012 4.3E-07 55.1 10.3 61 236-296 331-396 (429)
219 3mkq_B Coatomer subunit alpha; 96.5 0.23 7.8E-06 39.5 16.1 103 136-259 12-114 (177)
220 3ly7_A Transcriptional activat 96.4 0.39 1.3E-05 43.3 18.3 67 268-336 274-340 (372)
221 2kc7_A BFR218_protein; tetratr 96.2 0.017 5.8E-07 41.1 7.5 53 209-262 10-63 (99)
222 1pc2_A Mitochondria fission pr 96.2 0.048 1.6E-06 42.2 10.2 85 357-443 14-101 (152)
223 3mkq_B Coatomer subunit alpha; 96.2 0.33 1.1E-05 38.5 17.0 26 234-259 34-59 (177)
224 1wy6_A Hypothetical protein ST 96.1 0.29 9.8E-06 36.6 13.6 139 211-373 19-157 (172)
225 3bee_A Putative YFRE protein; 96.0 0.14 4.6E-06 36.1 11.1 47 215-262 25-71 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.6 0.19 6.4E-06 36.2 10.7 31 413-443 46-76 (104)
227 3lvg_A Clathrin heavy chain 1; 95.5 3.7E-05 1.3E-09 70.6 -11.6 206 128-354 53-276 (624)
228 1pc2_A Mitochondria fission pr 95.4 0.13 4.3E-06 39.8 9.5 83 289-375 16-103 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.1 0.25 8.5E-06 35.5 10.1 29 234-262 46-74 (104)
230 3u64_A Protein TP_0956; tetrat 95.0 1.6 5.4E-05 37.8 17.6 89 287-377 179-278 (301)
231 4h7y_A Dual specificity protei 94.7 0.5 1.7E-05 36.1 10.6 115 340-459 12-139 (161)
232 1nzn_A CGI-135 protein, fissio 94.5 0.39 1.3E-05 35.6 9.7 89 353-443 13-104 (126)
233 3u64_A Protein TP_0956; tetrat 94.5 0.59 2E-05 40.4 12.1 84 358-445 180-272 (301)
234 4h7y_A Dual specificity protei 94.2 0.97 3.3E-05 34.6 11.2 98 163-262 12-122 (161)
235 4b4t_P 26S proteasome regulato 94.1 3.8 0.00013 38.4 18.9 191 178-369 30-246 (445)
236 4b4t_P 26S proteasome regulato 93.9 4 0.00014 38.2 17.7 246 212-461 29-306 (445)
237 2ff4_A Probable regulatory pro 93.8 2.2 7.5E-05 39.2 15.5 68 382-452 177-249 (388)
238 3lvg_A Clathrin heavy chain 1; 93.8 0.00038 1.3E-08 64.1 -9.5 186 93-296 82-287 (624)
239 4gns_B Protein CSD3, chitin bi 93.7 0.54 1.8E-05 47.0 11.7 124 170-298 254-398 (754)
240 1nzn_A CGI-135 protein, fissio 93.1 0.72 2.5E-05 34.2 8.8 81 289-370 19-103 (126)
241 4fhn_B Nucleoporin NUP120; pro 92.5 4 0.00014 43.6 17.1 149 168-324 816-989 (1139)
242 4ady_A RPN2, 26S proteasome re 92.0 12 0.00041 38.4 24.7 154 244-404 500-657 (963)
243 4ady_A RPN2, 26S proteasome re 91.9 13 0.00043 38.2 27.1 258 173-441 383-657 (963)
244 4fhn_B Nucleoporin NUP120; pro 91.5 3.4 0.00012 44.1 15.2 192 239-440 817-1048(1139)
245 1qsa_A Protein (soluble lytic 91.5 11 0.00038 36.9 25.1 252 133-404 76-347 (618)
246 1v54_E Cytochrome C oxidase po 91.5 1.5 5.2E-05 30.7 8.1 70 103-173 18-88 (109)
247 2ff4_A Probable regulatory pro 91.0 1.3 4.5E-05 40.6 10.1 70 236-308 173-247 (388)
248 4gns_B Protein CSD3, chitin bi 90.4 3.7 0.00013 41.0 13.2 51 386-439 347-397 (754)
249 1v54_E Cytochrome C oxidase po 90.3 3.2 0.00011 29.1 8.9 48 180-227 26-73 (109)
250 3o48_A Mitochondria fission 1 89.1 5.6 0.00019 29.7 10.7 71 371-443 35-108 (134)
251 3txn_A 26S proteasome regulato 88.4 11 0.00039 34.3 13.8 168 234-403 19-208 (394)
252 2y69_E Cytochrome C oxidase su 88.1 3.4 0.00011 30.8 8.0 69 103-172 61-130 (152)
253 2y69_E Cytochrome C oxidase su 87.2 5.8 0.0002 29.6 8.9 59 182-241 71-129 (152)
254 3o48_A Mitochondria fission 1 85.4 9.6 0.00033 28.4 9.8 72 302-375 36-110 (134)
255 3lpz_A GET4 (YOR164C homolog); 85.0 20 0.00069 31.7 19.4 113 309-436 38-159 (336)
256 2wpv_A GET4, UPF0363 protein Y 84.8 20 0.00067 31.5 16.8 114 308-436 35-157 (312)
257 4b4t_R RPN7, 26S proteasome re 83.7 9.1 0.00031 35.6 11.1 16 428-443 360-375 (429)
258 4b4t_R RPN7, 26S proteasome re 82.3 9.6 0.00033 35.4 10.7 98 308-405 133-237 (429)
259 3eiq_C Programmed cell death p 82.1 28 0.00096 31.2 13.2 57 133-191 58-116 (358)
260 1wdy_A 2-5A-dependent ribonucl 81.3 7.6 0.00026 33.1 9.2 21 169-189 7-27 (285)
261 2p58_C Putative type III secre 80.8 12 0.00041 26.2 8.1 49 174-228 50-98 (116)
262 3ffl_A Anaphase-promoting comp 80.7 7.1 0.00024 30.4 7.5 58 205-262 26-91 (167)
263 1y8m_A FIS1; mitochondria, unk 80.6 16 0.00056 27.6 12.6 69 373-443 36-107 (144)
264 1wdy_A 2-5A-dependent ribonucl 80.4 14 0.00048 31.4 10.6 54 134-188 7-60 (285)
265 2uwj_G Type III export protein 79.8 12 0.00039 26.2 7.3 50 174-229 49-98 (115)
266 1zbp_A Hypothetical protein VP 79.4 7.5 0.00026 33.1 7.8 28 270-297 30-57 (273)
267 3esl_A Checkpoint serine/threo 79.1 22 0.00077 28.7 10.1 53 357-409 95-148 (202)
268 1y8m_A FIS1; mitochondria, unk 78.3 20 0.00067 27.1 11.7 71 303-375 36-109 (144)
269 3ffl_A Anaphase-promoting comp 75.4 14 0.00048 28.8 7.7 115 310-439 24-148 (167)
270 3lpz_A GET4 (YOR164C homolog); 73.6 48 0.0017 29.3 24.2 168 236-441 37-215 (336)
271 1k1a_A B-cell lymphoma 3-encod 73.2 28 0.00094 28.6 10.2 16 316-331 86-101 (241)
272 3txn_A 26S proteasome regulato 71.7 60 0.002 29.6 26.3 293 131-444 21-345 (394)
273 1k1a_A B-cell lymphoma 3-encod 63.7 59 0.002 26.5 10.4 83 103-190 15-102 (241)
274 4a1g_A Mitotic checkpoint seri 63.6 48 0.0016 25.4 9.3 56 393-449 82-137 (152)
275 2uwj_G Type III export protein 63.5 35 0.0012 23.9 8.4 83 109-202 21-105 (115)
276 2wpv_A GET4, UPF0363 protein Y 63.4 77 0.0026 27.7 23.1 168 236-441 35-216 (312)
277 3hra_A Ankyrin repeat family p 63.4 19 0.00064 28.7 6.8 42 432-473 157-200 (201)
278 3eu9_A Huntingtin-interacting 62.8 15 0.0005 30.3 6.2 19 135-153 45-63 (240)
279 3ltm_A Alpha-REP4; protein eng 62.7 58 0.002 26.1 19.2 80 162-249 93-172 (211)
280 2p58_C Putative type III secre 62.6 37 0.0013 23.8 9.6 83 109-202 22-106 (116)
281 3eiq_C Programmed cell death p 62.5 87 0.003 28.0 13.6 73 167-242 57-131 (358)
282 1n11_A Ankyrin; clathrin, BAND 61.3 58 0.002 29.8 10.7 18 172-189 118-135 (437)
283 4a1g_A Mitotic checkpoint seri 60.8 54 0.0018 25.1 11.4 50 148-197 84-134 (152)
284 1n11_A Ankyrin; clathrin, BAND 58.5 71 0.0024 29.2 10.7 329 100-473 17-366 (437)
285 3eu9_A Huntingtin-interacting 57.5 42 0.0014 27.4 8.2 49 138-188 15-63 (240)
286 3esl_A Checkpoint serine/threo 55.8 80 0.0027 25.5 12.1 55 285-339 93-148 (202)
287 4fke_A Aminopeptidase N; zinc 55.7 1.9E+02 0.0065 29.8 17.7 92 239-335 691-787 (909)
288 2wvi_A Mitotic checkpoint seri 55.7 70 0.0024 24.8 9.4 54 395-449 79-132 (164)
289 3pvs_A Replication-associated 55.6 1.3E+02 0.0045 27.9 12.5 54 211-264 267-325 (447)
290 2d2s_A Exocyst complex compone 54.5 54 0.0019 27.3 8.1 22 202-223 94-115 (235)
291 1zbp_A Hypothetical protein VP 53.4 1.1E+02 0.0036 26.2 15.5 54 281-335 7-60 (273)
292 3jxi_A Vanilloid receptor-rela 52.8 8.8 0.0003 32.4 3.1 19 455-473 229-247 (260)
293 2d2s_A Exocyst complex compone 52.6 81 0.0028 26.2 8.8 30 232-261 89-118 (235)
294 1ug3_A EIF4GI, eukaryotic prot 52.0 94 0.0032 27.6 9.8 25 237-261 14-38 (339)
295 2zu6_B Programmed cell death p 50.4 1.3E+02 0.0044 26.3 10.9 202 236-449 5-238 (307)
296 3t8k_A Uncharacterized protein 50.2 80 0.0027 24.9 8.4 28 171-198 42-69 (186)
297 2xig_A Ferric uptake regulatio 49.8 69 0.0024 24.3 7.5 63 400-465 16-78 (150)
298 2wvi_A Mitotic checkpoint seri 49.6 89 0.0031 24.2 9.5 50 148-197 79-129 (164)
299 3kea_A K1L; tropism, ANK repea 49.4 51 0.0017 28.2 7.6 19 136-154 35-53 (285)
300 3c1d_A Protein ORAA, regulator 49.3 88 0.003 24.1 12.0 48 358-407 47-94 (159)
301 4g8k_A 2-5A-dependent ribonucl 49.1 1.3E+02 0.0046 26.1 11.4 20 135-154 28-47 (337)
302 2zu6_B Programmed cell death p 48.7 1.4E+02 0.0047 26.1 11.7 77 274-351 169-247 (307)
303 3t8k_A Uncharacterized protein 48.3 98 0.0034 24.3 10.1 159 281-444 13-182 (186)
304 3kea_A K1L; tropism, ANK repea 48.0 75 0.0026 27.1 8.4 80 104-189 38-117 (285)
305 3ltj_A Alpharep-4; protein eng 47.1 1E+02 0.0035 24.3 20.1 122 128-262 58-179 (201)
306 3d5l_A Regulatory protein RECX 46.6 1.2E+02 0.0041 24.9 11.4 17 324-340 94-110 (221)
307 1ug3_A EIF4GI, eukaryotic prot 46.1 1.4E+02 0.0048 26.4 10.0 25 133-157 15-39 (339)
308 3hra_A Ankyrin repeat family p 46.0 67 0.0023 25.3 7.4 12 327-338 159-170 (201)
309 2nsz_A Programmed cell death p 45.9 83 0.0029 23.2 7.1 66 343-409 9-76 (129)
310 2fe3_A Peroxide operon regulat 45.5 61 0.0021 24.4 6.6 62 401-465 12-73 (145)
311 1bpo_A Protein (clathrin); cla 43.9 2E+02 0.0069 26.7 14.1 93 124-218 356-448 (494)
312 1mzb_A Ferric uptake regulatio 43.7 63 0.0022 24.0 6.3 62 401-465 8-70 (136)
313 3aji_A 26S proteasome non-ATPa 43.6 83 0.0028 25.4 7.8 14 175-188 14-27 (231)
314 3mv2_A Coatomer subunit alpha; 43.3 1.3E+02 0.0045 26.3 8.8 18 317-334 125-142 (325)
315 3jxi_A Vanilloid receptor-rela 43.2 16 0.00055 30.7 3.3 16 352-367 233-248 (260)
316 3ltm_A Alpha-REP4; protein eng 42.1 1.3E+02 0.0044 23.9 19.5 154 127-299 31-184 (211)
317 2fe3_A Peroxide operon regulat 41.5 78 0.0027 23.8 6.6 58 332-390 13-70 (145)
318 4aez_C MAD3, mitotic spindle c 40.7 1.4E+02 0.0048 24.5 8.1 55 393-448 131-185 (223)
319 4aez_C MAD3, mitotic spindle c 40.5 55 0.0019 26.9 5.7 74 87-163 110-184 (223)
320 1qsa_A Protein (soluble lytic 38.8 2.9E+02 0.0098 27.0 33.1 90 84-179 62-151 (618)
321 2ion_A PDCD4, programmed cell 38.7 1.3E+02 0.0044 22.9 8.9 64 238-304 13-78 (152)
322 2w57_A Ferric uptake regulatio 38.5 75 0.0026 24.1 6.1 62 401-465 7-69 (150)
323 2b7e_A PRE-mRNA processing pro 38.5 34 0.0012 21.2 3.2 35 430-464 3-38 (59)
324 4g8k_A 2-5A-dependent ribonucl 38.3 2E+02 0.0067 25.0 12.2 50 101-154 29-81 (337)
325 4ets_A Ferric uptake regulatio 38.3 93 0.0032 24.0 6.6 60 402-464 24-85 (162)
326 2ijq_A Hypothetical protein; s 38.1 1.4E+02 0.0047 23.1 8.4 51 319-369 45-103 (161)
327 2ion_A PDCD4, programmed cell 38.1 73 0.0025 24.4 5.9 64 167-231 12-77 (152)
328 2fu4_A Ferric uptake regulatio 38.0 84 0.0029 20.6 6.1 62 401-465 7-69 (83)
329 2keb_A DNA polymerase subunit 37.5 1E+02 0.0035 21.4 5.7 56 112-169 27-87 (101)
330 2xig_A Ferric uptake regulatio 37.5 82 0.0028 23.9 6.2 58 332-390 18-75 (150)
331 1mzb_A Ferric uptake regulatio 37.3 77 0.0026 23.5 5.9 57 333-390 10-67 (136)
332 3b7b_A Euchromatic histone-lys 37.3 65 0.0022 26.3 6.1 18 352-369 218-235 (237)
333 3aji_A 26S proteasome non-ATPa 36.6 1.2E+02 0.004 24.5 7.6 181 240-447 9-199 (231)
334 3eyy_A Putative iron uptake re 36.6 63 0.0022 24.4 5.3 62 400-465 8-69 (145)
335 4fke_A Aminopeptidase N; zinc 36.1 3.8E+02 0.013 27.6 17.1 157 204-369 691-859 (909)
336 2ijq_A Hypothetical protein; s 36.0 1.5E+02 0.0051 22.9 8.2 52 176-227 44-103 (161)
337 2f6m_A Suppressor protein STP2 35.5 85 0.0029 19.9 4.8 42 416-458 5-46 (65)
338 2nsz_A Programmed cell death p 35.4 1.3E+02 0.0045 22.1 10.2 65 238-305 11-77 (129)
339 4gq2_M Nucleoporin NUP120; bet 35.3 2.6E+02 0.0089 29.0 11.3 110 347-462 816-950 (950)
340 2fu4_A Ferric uptake regulatio 35.3 94 0.0032 20.4 6.4 29 360-388 36-64 (83)
341 2o03_A Probable zinc uptake re 34.5 55 0.0019 24.1 4.6 48 418-465 15-62 (131)
342 3eyy_A Putative iron uptake re 34.3 78 0.0027 23.9 5.5 34 357-390 33-66 (145)
343 4b4t_S RPN3, 26S proteasome re 33.6 1.4E+02 0.0048 28.3 8.0 63 200-262 232-298 (523)
344 2rfa_A Transient receptor pote 33.4 1.9E+02 0.0064 23.2 10.5 20 317-336 162-181 (232)
345 2f8y_A Notch homolog 1, transl 32.7 1.9E+02 0.0064 23.0 8.7 181 277-474 28-214 (223)
346 3mwm_A ZUR, putative metal upt 32.6 54 0.0019 24.5 4.3 49 417-465 17-65 (139)
347 2dzn_A Probable 26S proteasome 32.3 56 0.0019 26.4 4.9 54 241-301 6-59 (228)
348 2w57_A Ferric uptake regulatio 32.1 90 0.0031 23.7 5.6 33 358-390 34-66 (150)
349 2rfa_A Transient receptor pote 31.9 2E+02 0.0068 23.1 9.5 22 423-444 161-182 (232)
350 2r9g_A AAA ATPase, central reg 31.7 2E+02 0.0069 23.1 9.2 17 213-229 28-44 (204)
351 4ets_A Ferric uptake regulatio 31.2 1.2E+02 0.0042 23.3 6.3 56 87-143 26-83 (162)
352 3b7b_A Euchromatic histone-lys 30.9 1.1E+02 0.0036 24.9 6.5 50 350-404 183-235 (237)
353 2r9g_A AAA ATPase, central reg 30.4 2.1E+02 0.0073 23.0 9.9 60 347-407 17-84 (204)
354 3dfg_A Xcrecx, regulatory prot 29.4 1.9E+02 0.0066 22.2 10.8 25 447-471 131-156 (162)
355 1bd8_A P19INK4D CDK4/6 inhibit 29.1 88 0.003 23.3 5.2 13 459-471 141-153 (156)
356 3pvs_A Replication-associated 28.6 3.5E+02 0.012 24.9 14.2 140 249-407 166-326 (447)
357 3twr_A Tankyrase-2; ankyrin re 28.0 1E+02 0.0035 23.2 5.5 121 313-448 12-136 (165)
358 1bpo_A Protein (clathrin); cla 26.7 3.9E+02 0.013 24.9 10.7 83 213-301 343-425 (494)
359 4b4t_O 26S proteasome regulato 26.2 3.6E+02 0.012 24.3 10.2 57 312-368 82-154 (393)
360 3ltj_A Alpharep-4; protein eng 25.7 2.4E+02 0.0082 22.0 21.0 153 128-299 27-179 (201)
361 2dzn_A Probable 26S proteasome 25.1 2.3E+02 0.0078 22.5 7.5 15 105-119 10-24 (228)
362 4b4t_S RPN3, 26S proteasome re 24.8 4.5E+02 0.015 24.9 10.9 25 166-190 233-257 (523)
363 2etb_A Transient receptor pote 23.7 99 0.0034 25.5 5.0 16 423-438 228-243 (256)
364 2y1l_E Darpin-8.4; hydrolase-i 23.7 2.4E+02 0.008 21.2 7.3 17 456-472 151-167 (169)
365 3bge_A Predicted ATPase; struc 23.1 2.9E+02 0.01 22.1 9.3 54 353-406 19-77 (201)
366 4gq2_M Nucleoporin NUP120; bet 23.1 6.4E+02 0.022 26.1 15.0 51 235-285 898-950 (950)
367 3qil_A Clathrin heavy chain 1; 22.4 59 0.002 23.6 2.6 52 379-435 35-86 (125)
368 3f3f_C Nucleoporin NUP85; stru 22.4 2.7E+02 0.0092 26.7 7.8 87 97-185 482-570 (570)
369 1bd8_A P19INK4D CDK4/6 inhibit 22.1 97 0.0033 23.0 4.2 15 140-154 10-24 (156)
370 3ljn_A Hypothetical protein; a 22.0 1.3E+02 0.0044 26.6 5.6 189 275-474 21-234 (364)
371 2o03_A Probable zinc uptake re 21.5 1.3E+02 0.0046 22.0 4.7 34 215-248 26-59 (131)
372 3ygs_P Procaspase 9; apoptosis 21.2 1.6E+02 0.0055 20.2 4.7 34 321-358 52-85 (97)
373 2yru_A Steroid receptor RNA ac 20.9 2E+02 0.0069 20.8 5.3 42 116-157 48-89 (118)
374 3e3v_A Regulatory protein RECX 20.9 3E+02 0.01 21.4 9.0 115 321-439 48-163 (177)
375 3ctd_A Putative ATPase, AAA fa 20.8 3.4E+02 0.012 22.0 9.7 55 353-407 47-106 (213)
376 3mwm_A ZUR, putative metal upt 20.8 1.2E+02 0.0041 22.6 4.3 20 217-236 31-50 (139)
377 1rw2_A ATP-dependent DNA helic 20.8 1.2E+02 0.004 23.2 4.2 21 31-51 36-56 (152)
378 2pnn_A Transient receptor pote 20.7 1E+02 0.0035 25.8 4.5 191 275-474 14-256 (273)
379 3bge_A Predicted ATPase; struc 20.7 3.3E+02 0.011 21.8 8.4 16 214-229 22-37 (201)
380 3mkr_B Coatomer subunit alpha; 20.4 2E+02 0.0069 25.1 6.0 18 317-334 113-130 (320)
381 3e3v_A Regulatory protein RECX 20.3 3.1E+02 0.011 21.4 10.3 116 286-404 48-165 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-33 Score=280.62 Aligned_cols=401 Identities=9% Similarity=-0.060 Sum_probs=297.5
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..++.+.|...|..+.. ..|+...+..++..+...|+++.|..+++.+... +++..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 34445555554 56788888888877653 2346677778888888888888888888876543 677888888888
Q ss_pred HHHHcCCHHHHHHHHHhccc-C--------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-------
Q 011919 138 LCEKARLANEAMWVLRKMPE-F--------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL------- 195 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------- 195 (475)
+|.+.|++++|..+|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 88888888888888885432 2 2344678888888888888888888888888765331
Q ss_pred ---------------------------------------------------------------CCChhhHHHHHHHHHhc
Q 011919 196 ---------------------------------------------------------------YPDIITYVSMIKGFCNA 212 (475)
Q Consensus 196 ---------------------------------------------------------------~~~~~~~~~li~~~~~~ 212 (475)
+++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 24555566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666666665542 255566666666666666666666666666532 4567778888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887653 33567888888888888888888888888877653 256778888888888888888888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
..+..+|..+...|.+.|++++|.++|+++.+. +..|.....+|..++.+|.+.|++++|.++++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 346778888888888888888888888888775 44442116788888888888888888888888888877 6678
Q ss_pred hhHHHHHHHHHhcCCHhHHhhccc
Q 011919 449 PYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++..+..+|.+.|++++|.+..+
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888888888888877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-32 Score=274.64 Aligned_cols=368 Identities=9% Similarity=-0.062 Sum_probs=312.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788999999999999999999999999854 678899999999999999999999999998653 57899999999
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------
Q 011919 172 RLFCEKGDMIAADELMKGMGLI---------------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC------ 230 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------ 230 (475)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999964322 2234688999999999999999999999999876432
Q ss_pred ----------------------------------------------------------------CcCHHHHHHHHHHHHh
Q 011919 231 ----------------------------------------------------------------AANLVAYSALLDGICR 246 (475)
Q Consensus 231 ----------------------------------------------------------------~~~~~~~~~ll~~~~~ 246 (475)
+++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1566777778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887653 3466778888888888888888888888887553 456788899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999875432 57789999999999999999999999998764 3477889999999999999999999999999865
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++.+
T Consensus 472 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 472 ---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 237788999999999999999999999999886 65676 6789999999999999999988764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-31 Score=258.70 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=138.4
Q ss_pred HHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---------H
Q 011919 146 NEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------L 215 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~ 215 (475)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666665554443 34677777777777777777777777777777777777777777776543 5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777776 3456777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777776664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.3e-32 Score=260.69 Aligned_cols=204 Identities=12% Similarity=0.135 Sum_probs=115.2
Q ss_pred HHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC---------H
Q 011919 218 ACGLFKVMKRHGCAANL-VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM---------M 287 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 287 (475)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |++||..+||.+|.+|++.+. .
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34444555555544333 24555666666666666666666666663 356666666666666655443 4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..| +..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666554 55666666555554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-26 Score=218.46 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=322.6
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...++++.|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 677888888876654432 2345666677778888999999999999888765 6788999999999999999999999
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999998754 3456689999999999999999999999998764 3455677788889999999999999999999874
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..... +.+..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3368899999999999999999999999999854 4567789999999999999999999999988763 33578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987643 56789999999999999999999999998763 457889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++++.. |.+...+..+...+.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999998864 2467899999999999999999999999999876 6677788888888777664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.7e-27 Score=220.20 Aligned_cols=358 Identities=13% Similarity=0.024 Sum_probs=312.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
...+...|+++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345567899999999999988764 5566777777788999999999999999887754 46788999999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998754 4456789999999999999999999999999875 235667788899999999999999999999
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++....... +
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 8853 4567899999999999999999999999999864 335778889999999999999999999999886543 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..+|..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 7789999999999999999999999999864 2357789999999999999999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|.+.++++++.. |.+...+..+...+.+.|++++|.+..+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 6778899999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.1e-22 Score=196.08 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=294.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777888889999999999999998764 5678899999999999999999999999998765 34678899999
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
.++.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998754 3333 555555 344889999999999999999864 447889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL---- 312 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 312 (475)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999999999998753 4678899999999999999999999999998753 2234444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 313 --------IKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
...+.+.|++++|...|+.+.+...... ...|..+...+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 7889999999999999999988543211 3478889999999999999999999998753 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HcC
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------LCRKN-----HSVEAAKLARFML-KKR 443 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~~ 443 (475)
+..+|...|++++|...++++.+.. | .+...+..+..+ |...| +.+++.+.++++. +..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN--E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999854 3 356677776633 33344 6677888888743 332
Q ss_pred C--CCCh-------hhHHHHHHHHHhcCCHhHHhh
Q 011919 444 I--WLQG-------PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 444 ~--~~~~-------~~~~~l~~~~~~~g~~~~a~~ 469 (475)
. .++. ..+..+..+|...|+.+...+
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 1222 377888899999998877543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.5e-23 Score=197.55 Aligned_cols=319 Identities=12% Similarity=0.065 Sum_probs=270.8
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5677889999999999999999999999998754 4578899999999999999999999999998865 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL---VAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
..++.+.|++++|...|+++.+... .+. ..+..+ ...+.+.|++++|...|+++.+.. +.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Confidence 9999999999999999999998642 233 555555 445899999999999999998853 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 011919 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL--- 347 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 347 (475)
..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998763 446889999999999999999999999999876433 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011919 348 ---------VVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 348 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
...+...|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 329 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME---PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccH
Confidence 78899999999999999999875 454 4478888899999999999999999998864 2477
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+|..+..+|...|++++|.+.++++++.. |.+...+..+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 899999999999999999999999999876 55666676666443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-22 Score=199.16 Aligned_cols=359 Identities=12% Similarity=-0.060 Sum_probs=217.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...|....... |+...|..+...+...|+++.|...++.+.+.+ +.+..++..+..++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4678888888888776554 467788888888888888888888888887765 556778888888888888888888
Q ss_pred HHHHhcccCCCCCCHh----------------------------------------------------------------
Q 011919 150 WVLRKMPEFDLRPDTI---------------------------------------------------------------- 165 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 165 (475)
..|+++.+.+. ++..
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 88888866542 1211
Q ss_pred ---------------hHHHHHHHHHh---cCChhHHHHHHHHhcc-----CCC--------CCChhhHHHHHHHHHhcCC
Q 011919 166 ---------------IYNNVIRLFCE---KGDMIAADELMKGMGL-----IDL--------YPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 166 ---------------~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~~~ 214 (475)
.+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 11222222222 5666666666666554 210 1123445555566666666
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...++++.+.. |+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666666553 225556666666666666666666666665532 334555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~ 373 (475)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+... .
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 6665543 223445555666666666666666666666554322 344555666666666666666666666554211 1
Q ss_pred CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 374 PD----GLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++ ...+..+...+.. .|++++|...++.+.+.. +.+..++..+...+.+.|++++|.+.++++++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2255555566666 666666666666666543 1245556666666666666666666666666654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-21 Score=192.17 Aligned_cols=366 Identities=11% Similarity=-0.086 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 95 FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
..+......+...|+++.|+..++.+.+.. |+...|..+..++.+.|++++|+..|+++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677888999999999999999875 689999999999999999999999999998765 45678999999999
Q ss_pred HhcCChhHHHHHHHHhccCCC-----------------------------------------------------------
Q 011919 175 CEKGDMIAADELMKGMGLIDL----------------------------------------------------------- 195 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~----------------------------------------------------------- 195 (475)
.+.|++++|...|+++...+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998865431
Q ss_pred -------------------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 011919 196 -------------------YPDIITYVSMIKGFCN---AGRLEDACGLFKVMKR-----HGC--------AANLVAYSAL 240 (475)
Q Consensus 196 -------------------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 240 (475)
+.+...+......+.. .|++++|...|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1114455555555554 8999999999999988 311 2245678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 320 (475)
...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998853 448888999999999999999999999998764 346778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987644 56778899999999999999999999998753 2346788888999999999999999999
Q ss_pred HHHHcCCCCCCc----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 401 DIEKIGFLSSVD----SDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++.+..... ++ ...|..+...+.. .|++++|.+.+++++... +.+...+..+...+.+.|++++|.+.++
T Consensus 397 ~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998753211 11 3489999999999 999999999999999887 6778889999999999999999988765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.1e-20 Score=184.25 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=186.9
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... +.+...+..+...+...|+++.|.+.++.+.+.. +.+..++..+..++...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4778888888887776543 2467778888888888899999999988888765 557778888888888889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC------CCCChh-----------------------
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDII----------------------- 200 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~----------------------- 200 (475)
..|+.+.. .|+.. ...+..+...+....|...++++.... ..|+..
T Consensus 114 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88864432 12211 111222222223333344443332210 001100
Q ss_pred -------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 201 -------TYVSMIKGFCN--------AGRLEDACGLFKVMKRHGCAAN-------LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 201 -------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|.+.++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 01111111110 12444555555554443211 1 1123334444445555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.+..
T Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 268 ESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 55442 1334444445555555555555555555554432 223444455555555555555555555555443322
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCchhh
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---SVDSDI 415 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 415 (475)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 23344445555555555555555555554432 1223344444455555555555555555544431000 001111
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 416 HSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 416 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+..+...+.+. |++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22233344444 55555555555555444 344444555555555555555554433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.6e-20 Score=170.57 Aligned_cols=319 Identities=11% Similarity=0.050 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444445555555555555555554432 2234455555555555555555555555554432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
..|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 555555555555555544210 122222222 456667777777777777776642 345666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS----------- 345 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------- 345 (475)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 7777777777777777777766553 335566667777777777777777777777664432 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 346 -SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 346 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
.+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..+|..+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 312 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 33666888999999999999988753 33 2 224456678889999999999999998864 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
...+...|++++|.+.++++++.. |.+......+..+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 999999999999999999999876 556666666666655443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.2e-18 Score=162.13 Aligned_cols=318 Identities=10% Similarity=-0.007 Sum_probs=260.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677788888999999999999998865 5578889899999999999999999999988754 3467889999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 174 FCEKGDMIAADELMKGMGLIDLY---PDIITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|++++|.+.++++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998754 2 244445444 578889999999999999998875 44788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------- 310 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------- 310 (475)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999853 56788899999999999999999999999887632 2333332
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 311 ----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 311 ----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999886543 22 335567889999999999999999998763 3367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
...+...|++++|.+.++++.+.. | .+...+..+..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN--E-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHH
Confidence 999999999999999999999865 2 35666666655543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.9e-19 Score=165.51 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=224.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011919 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456667777778888888888888888877654 4456667777778888888888888888887754 3356777788
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 241 LDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888887743 3456678888888888888888888888887764 22455666678888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 011919 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--------VKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 391 (475)
|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. .......+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888876543 56778888888888899999998888887531 12234678888888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHhH
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEEL 466 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 466 (475)
+++|...+++..+.. +.+..+|..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+.
T Consensus 252 ~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 252 YAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchhc
Confidence 999999999988864 2367788889999999999999999999888776 56777777877777 45665543
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.5e-18 Score=170.92 Aligned_cols=356 Identities=12% Similarity=-0.028 Sum_probs=269.1
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|.+.|....... +.+...+..+...+...|+++.|.+.++.+ .. .|+.. ...+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHH
Confidence 5789999999998876543 346778888899999999999999999743 22 22211 12234444555567788
Q ss_pred HHHHhcccCC------CCCCHh------------------------------hHHHHHHHHHh--------cCChhHHHH
Q 011919 150 WVLRKMPEFD------LRPDTI------------------------------IYNNVIRLFCE--------KGDMIAADE 185 (475)
Q Consensus 150 ~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~--------~g~~~~a~~ 185 (475)
..++.+.... ..|+.. ....+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775531 111111 12222222211 247899999
Q ss_pred HHHHhccCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 186 LMKGMGLIDLYPD-------IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 186 ~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
+++++.+.. +.+ ..++..+...+...|++++|...+++..+. .|+...+..+...|...|++++|.+.++
T Consensus 224 ~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 223 234667778888999999999999999987 4568889999999999999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
++.+.. +.+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 301 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 301 KAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998853 4568889999999999999999999999998864 335678889999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-----KPDGLACSVMIRELCLG----------GQVLEGFCLYEDIE 403 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~ 403 (475)
+...+..+...+...|++++|.+.|+++.+... ......+......+... |++++|...++++.
T Consensus 377 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 -LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 566788999999999999999999999876421 11112233444566777 99999999999999
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.. +.+..+|..+...|.+.|++++|.+.|+++++..
T Consensus 456 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 456 ELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 875 2467889999999999999999999999999886
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.2e-19 Score=166.86 Aligned_cols=287 Identities=14% Similarity=0.014 Sum_probs=181.3
Q ss_pred CChhHHHH-HHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 178 GDMIAADE-LMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 178 g~~~~a~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5554332210 0123345555555555555555555555555543 22445555555555555566666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST---------------LIKGFCV 318 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 318 (475)
.+.|+++.+.. +.+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 118 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 55555555532 234555555555555556666666655555543211 1111110 2333347
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 319 EGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++++|...++++.+..... +..++..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888887765432 46778888888888899999999888887653 3356788888888888999999999
Q ss_pred HHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCHhHH
Q 011919 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL----------QGPYVDKIVEHLKKSGDEELI 467 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a 467 (475)
.++++.+.. +.+..++..+...|.+.|++++|.+.++++++..... ....+..+..++...|+.+.|
T Consensus 273 ~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 273 AYRRALELQ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999888764 2367788888889999999999999998888754111 267888889999999999988
Q ss_pred hhcccc
Q 011919 468 TNLPKI 473 (475)
Q Consensus 468 ~~l~~~ 473 (475)
..+.+.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 877654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1e-18 Score=160.61 Aligned_cols=294 Identities=9% Similarity=-0.083 Sum_probs=226.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888999999888887654 3455667777788888889999998888887754 4567778888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 206 IKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 206 i~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 88888888 8888999888888764 3356778888888888999999999998888753 34456677788888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCC
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 356 (475)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ......++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999998887763 3456778888888888999999999888887632 12234678888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-HhcCCHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-CRKNHSV 430 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 430 (475)
+++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC---CCchHHHHHHHHHHHHHhCchh
Confidence 999999999888753 2356778888888889999999999999888754 23677788887777 3455543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.7e-16 Score=150.10 Aligned_cols=338 Identities=13% Similarity=0.000 Sum_probs=248.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHH----c
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----A 142 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 142 (475)
.++...|...|...... .+...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 56777788877776654 245566666666666 778888888888877765 55666667777777 6
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCC
Q 011919 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGR 214 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 214 (475)
+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888877754 56667777777776 678888888888877654 56677777777776 788
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCC
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGM 286 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 286 (475)
.++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCC
Confidence 888888888887765 56677777777775 678888888888887742 45566666666766 788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 358 (475)
.++|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 888888888877654 445666677777766 78888888888887765 3455666777776655 678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSV 430 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 430 (475)
+|.+.|++..+.| +...+..+-..|.. .+++++|...|++..+.+ +...+..+...|.+ .++++
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 8888888887763 45667777777776 678888888888888765 45677778777777 78888
Q ss_pred HHHHHHHHHHHcC
Q 011919 431 EAAKLARFMLKKR 443 (475)
Q Consensus 431 ~A~~~~~~m~~~~ 443 (475)
+|.+.|++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888776
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.7e-18 Score=161.96 Aligned_cols=293 Identities=13% Similarity=-0.014 Sum_probs=231.6
Q ss_pred HcCCHHHHHH-HHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 141 KARLANEAMW-VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
-.|++++|.+ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578899998 8887665421 1135678889999999999999999999998765 567888999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH---------------HHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS---------------VIQIF 281 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 281 (475)
+|...|+++.+.. +.+..++..+...|...|++++|.+.++++.... +.+...+.. .+..+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998875 4478899999999999999999999999998853 222222221 23444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998764221 5788999999999999999999999999886533 567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CCchhhHHHHHHHHHhcCCHHHH
Q 011919 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--------SVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.+.|+++.+.. +.+...+..+...|...|++++|...++++.+..... +....+|..+..++...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998753 3457888999999999999999999999988753110 11268899999999999999999
Q ss_pred HHHHHHHH
Q 011919 433 AKLARFML 440 (475)
Q Consensus 433 ~~~~~~m~ 440 (475)
..++++.+
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99876443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.2e-18 Score=162.81 Aligned_cols=265 Identities=12% Similarity=-0.019 Sum_probs=184.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 277 (475)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34446666667777777777777777766653 3356667777777777777777777777776642 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPN-----------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYS 345 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 345 (475)
..+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 777777777777777777766532 21 1223345667788888888888888887765431 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888888888888888888887653 3357788888888888889999988888888864 2357788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 426 KNHSVEAAKLARFMLKKRIW-----------LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.|++++|.+.++++++.... .+...+..+..++...|+.+.+.++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 89999999988888865311 135678888888888898888877654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.4e-18 Score=160.74 Aligned_cols=269 Identities=12% Similarity=-0.018 Sum_probs=218.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998765 5678899999999999999999999999998874 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc-H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDCSPN-V----------VTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTI 309 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~ 309 (475)
..|.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.... ++..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999998742 32 2 22334578899999999999999999886422 157889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+...+...|++++|...++++.+.... +..+|..+..+|...|++++|.+.|+++.+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 99999999999999999999999886543 57789999999999999999999999998763 23478899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 390 GQVLEGFCLYEDIEKIGFL---------SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|++++|...++++.+.... +..+..+|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999875311 011367899999999999999988887654
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.6e-15 Score=148.91 Aligned_cols=403 Identities=10% Similarity=-0.001 Sum_probs=286.2
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+...+...+..+..++...|..+|..+... ++.+...+...+....+.++++.|..+++.+.+.. |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 344444444433467888999999887653 45678888899999999999999999999998864 68888877775
Q ss_pred H-HHHcCCHHHHHH----HHHhccc-CCCC-CCHhhHHHHHHHHHh---------cCChhHHHHHHHHhccCCCCCChhh
Q 011919 138 L-CEKARLANEAMW----VLRKMPE-FDLR-PDTIIYNNVIRLFCE---------KGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 138 ~-~~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 201 (475)
. ....|+.++|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++..+.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677766655 7776654 2433 356677777776554 6889999999999987311111234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhc----
Q 011919 202 YVSMIKGF-------------CNAGRLEDACGLFKVMK------RHG---CAAN--------LVAYSALLDGICRL---- 247 (475)
Q Consensus 202 ~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~---- 247 (475)
|....... .+.++++.|..+++.+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13455677777776532 211 2443 24555555433322
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHH
Q 011919 248 GSM----ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMK-------EALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 248 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~ 309 (475)
++. +.+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888742 4577888888888775 79987 899999998863233457888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HHH
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR-ELC 387 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~-~~~ 387 (475)
..++..+.+.|++++|..+|+.+++.........|..++..+.+.|++++|.++|++..+. .|+ ...+..... .+.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHH
Confidence 8999999999999999999999998643211357888899899999999999999999875 332 222322221 234
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHhcCCH
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WL--QGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~g~~ 464 (475)
..|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .| ....|...+....+.|+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 6899999999999998864 24678999999999999999999999999998752 22 233788888888999999
Q ss_pred hHHhhccc
Q 011919 465 ELITNLPK 472 (475)
Q Consensus 465 ~~a~~l~~ 472 (475)
+.+..+.+
T Consensus 480 ~~~~~~~~ 487 (530)
T 2ooe_A 480 ASILKVEK 487 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.9e-15 Score=144.68 Aligned_cols=347 Identities=12% Similarity=-0.029 Sum_probs=280.5
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCH
Q 011919 93 SSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 93 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 164 (475)
+...+..+...+.. .++++.|.+.++...+.| +...+..+...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444455555555 788999999999888865 56677778888888 889999999999988754 66
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 011919 165 IIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 165 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777788888888 789999999999988765 56777778888876 789999999999998875 6788
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 237 YSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 237 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888888 89999999999999884 356677778888876 789999999999988765 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 011919 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-----KRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~ 379 (475)
+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|.+.|++..+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 6677777777 889999999999998775 455677788888877 89999999999998875 44566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 380 SVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 380 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|.++|++..+.+ ++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 66777777666 7889999999999875 56788889888888 899999999999999876 467788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011919 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...|.+ .++.++|.+..+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 88888888 7899988876543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=5.6e-17 Score=148.71 Aligned_cols=277 Identities=10% Similarity=-0.057 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344555555666666666666666655433 3345555555556666666666666666655543 22455555555666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IK-GFCVEGNL 322 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~g~~ 322 (475)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS---TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 66666666666666555532 1111122211000 0000001111 11 25566677
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777665432 45667777777777777777777777776543 234566777777777777888888777777
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-----------QGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+.. +.+..+|..+...+.+.|++++|.+.++++++..... +...+..+..++.+.|+.+.|..+.
T Consensus 233 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN---PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7654 2356677777777778888888888887777654221 4667777777888888888777766
Q ss_pred cc
Q 011919 472 KI 473 (475)
Q Consensus 472 ~~ 473 (475)
+.
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.8e-17 Score=149.87 Aligned_cols=283 Identities=11% Similarity=-0.052 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567777889999999999999999998754 3477889999999999999999999999998765 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH--HHHhcC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKG 285 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 285 (475)
.+...|++++|.+.++++.+.... +...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 999999999999999999986422 22222222000 011111111111 144445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.+.++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 224455555556666666666666666665554322 34556667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++.+.. +.+...+..+...+...|++++|.+.++++.+..... ..+..+|..+..++.+.|++++|.+++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766542 2345666777777777777777777777777653110 004567788888888888888888877
Q ss_pred HHHH
Q 011919 437 RFML 440 (475)
Q Consensus 437 ~~m~ 440 (475)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.8e-16 Score=142.55 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=133.1
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
-..-.|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34445666666666665544321111234444556666666666666544331 24455556666666666666666
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 218 ACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 218 a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|++.++++...+..| +...+..+...|.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666554323 344455555666666666666666654 23555566666666666666666666666
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 297 MEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 297 m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
+.+.. |+.... ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|.+.+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 65542 332111 1122222333555555555555555422 244555555555555555555555555555432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011919 374 PDGLACSVMIRELCLGGQVLE-GFCLYEDIEKI 405 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 405 (475)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 234455555555555555543 34555555554
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.9e-18 Score=155.77 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++.+.|.+.++.+ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+++
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4455555555443 12235555555555555555555555331 34445555555555555555555544
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 011919 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (475)
+..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 444332 2334445555555555555555554442 134445555555555555555555555533
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 13555555555555555555555554 1445555555555555555555333222 11122223345
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~ 368 (475)
+..|.+.|++++|..+++..+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 555555555555555555554
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4.9e-16 Score=139.71 Aligned_cols=252 Identities=11% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDI--ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
-....|+++.|+..+++..... |+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445667777776666654322 222 3344456666677777666655543 1244556666666666666777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
++|++.++++...+. .|.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776655310 123444555555666677777777776665 3455666666666777777777777777
Q ss_pred HHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 331 KVVAGGSVSSGGCY---SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 331 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+.+.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 766554 222111 112233334466777777777766542 3455666666666677777777777777766654
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011919 408 LSSVDSDIHSVLLLGLCRKNHSVE-AAKLARFMLKKR 443 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 443 (475)
+.+..++..++..+...|+.++ +.++++++++..
T Consensus 231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2355666666666666666654 456666666665
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.5e-19 Score=173.58 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=110.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
.-..||+++|++||+.|++++|.++|++|.+.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888887776421 2467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011919 311 TLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------GLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li 383 (475)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888887 467888888888888888888888887655443 333333333 2334443 33444455
Q ss_pred HHHHhcC
Q 011919 384 RELCLGG 390 (475)
Q Consensus 384 ~~~~~~g 390 (475)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=172.27 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhcc---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 239 (475)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445777777777777777777777766543 46777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 011919 240 LLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN------RVTISTL 312 (475)
Q Consensus 240 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l 312 (475)
+|.++++.|+. ++|.++|++|.+. |+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 77777777763 6677777777774 4577777777777554442 333333333 2233333 3344455
Q ss_pred HHHHHhcC
Q 011919 313 IKGFCVEG 320 (475)
Q Consensus 313 i~~~~~~g 320 (475)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555544
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.6e-14 Score=141.93 Aligned_cols=371 Identities=11% Similarity=-0.001 Sum_probs=269.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
.+...+..++.. ...++++.|..+++.+.+.. |-+...|...+..+.+.|++++|..+|+++.... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 467778788874 66899999999999998864 6678899999999999999999999999998864 6887887777
Q ss_pred HHH-HhcCChhHHHH----HHHHhcc-CCCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCcCHH
Q 011919 172 RLF-CEKGDMIAADE----LMKGMGL-IDLY-PDIITYVSMIKGFCN---------AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 172 ~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777765 6666543 2433 356678777776654 688999999999998832111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcCC-CCCCc--------HHHHHHHHHHHHhc---
Q 011919 236 AYSALLDGI-------------CRLGSMERALELLGEME------KEGG-DCSPN--------VVTYTSVIQIFCGK--- 284 (475)
Q Consensus 236 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~~-~~~~~--------~~~~~~li~~~~~~--- 284 (475)
.|....... .+.+++..|..++.++. +... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 13456777877776632 2111 12443 24566555443322
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHH
Q 011919 285 -GMM----KEALGILDRMEALGCAPNRVTISTLIKGFCV-------EGNLD-------EAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 285 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
++. +++..+|++..... +.+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 233 47788998888752 3467778888777775 69987 8999999998632233578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG- 422 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~- 422 (475)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|+++|++..+.. +.+...|...+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHH
Confidence 9999999999999999999999975 554 2 578888888889999999999999999853 2233334333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
+...|++++|.++|++.++.. |.++..+..++..+.+.|+.+.|..+.+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 346899999999999999876 66788999999999999999999887653
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.4e-17 Score=153.22 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=136.1
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+.|++++|.++++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778999999999943 34899999999999999999999965 3577899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 88877764 4567889999999999999999998773 267779999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011919 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 26788999999999999999996655442 23444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHH
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK--NHSVEAAKLARFMLKKRIWL------QGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 452 (475)
.++..|.+.|++++|..+++...... +-...+|+.+...|++- ++..+.++.|.. ..++++ +...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 78899999999999999999988754 23778899998888764 345555554431 123333 567889
Q ss_pred HHHHHHHhcCCHhHHhhc
Q 011919 453 KIVEHLKKSGDEELITNL 470 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l 470 (475)
.+.-.|.+.|+++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999987653
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.1e-13 Score=142.07 Aligned_cols=345 Identities=14% Similarity=0.084 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011919 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSS-YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..+|+.+....+.. ..+.+..++..+......+. |..+...-+.++....+. +.....+.++..... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34455554444443 45555555555555543332 333333333333333222 334444444433211 1 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
-+...+...|++++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 245567778888888888887632 2222233332 667888888888765 24778888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|...|.+. -|...|..++.+|.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHH
Confidence 999998888653 377788888899999999999999888777632 3333344588888888888754443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 2 345566777888888899999999999885 24888999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
.+..+|..+-.+|...|++..|......+.. +...+..++..|.+.|.+++|+.+++..+... +-....|..
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 3557888888888888888888876654322 45667788889999999999999998887655 445555655
Q ss_pred HHHHHHhcC
Q 011919 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+..++.+..
T Consensus 1320 LaiLyaKy~ 1328 (1630)
T 1xi4_A 1320 LAILYSKFK 1328 (1630)
T ss_pred HHHHHHhCC
Confidence 555555543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.1e-14 Score=137.67 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=237.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC----
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 158 (475)
......|+.+..+....|+.++|++.++...+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667888888999999999999998876542 12334568888999999999999999998876541
Q ss_pred -C--CCCCHhhHHHHHHHHHhc--CChhHHHHHHHHhccCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 011919 159 -D--LRPDTIIYNNVIRLFCEK--GDMIAADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 159 -~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+ ......++..+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112345666666566554 57899999999988754 3345555555444 345677888999999888764
Q ss_pred CcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 231 AANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 3356666666655554 467889999999988753 4667788899999999999999999999988763 2345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVE-------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 307 ~~~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
..+..+..+|... +..+.|...++...+.+.. +..++..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5566555554322 3356778888887765533 4566888999999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 368 LASGVKPDGL--ACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 368 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+....+... .+..+.. .....|+.++|+..+++..+... +.... .+....+.++++..+...
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~---------~~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREK---------EKMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHH---------HHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHH---------HHHHHHHHHHHHHHHHhC-
Confidence 8764333221 1222222 23567899999999998887532 11111 111223344444444444
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|.++.++..+..++...|++++|.+..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555566666666666666666655544
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.2e-12 Score=134.66 Aligned_cols=309 Identities=9% Similarity=-0.031 Sum_probs=165.1
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.+++++|.++.+.. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.++
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445554444432 23445555555555555555555555442 2444455555555555555555555
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+.
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----- 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----- 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----
Confidence 55444332 22222223555555555555322221 1 2234444455555555555555555555431
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011919 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..
T Consensus 1223 ------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLee 1285 (1630)
T 1xi4_A 1223 ------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 1285 (1630)
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHH
Confidence 3555555555555555555555544 1345555555555555555555554432 2224455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~li~ 421 (475)
++..|.+.|.+++|+.+++..+... +-....|+-+...+++. ++++..+.++...+..-.|+ .+...|..++.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 8888888888888888887776432 22234555555555543 33333333333334433332 25677888888
Q ss_pred HHHhcCCHHHHHHH-------------HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 422 GLCRKNHSVEAAKL-------------ARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 422 ~~~~~g~~~~A~~~-------------~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
.|.+.|+++.|... |++.+.+ ..++..|...+..|...+
T Consensus 1364 LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 88899999888732 2222211 456677777777776666
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.5e-15 Score=129.18 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 275 (475)
..+..+...+...|++++|...|++..+.. .+..++..+..+|...|++++|.+.++++.+......++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666554 455666666666666666666666666665532100111 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011919 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666677777777777776666542 332 2355556777777777777665422 3456777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...+.+.|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877653 2356777777778888888888888888887764 23567788888888888888888888
Q ss_pred HHHHHHcC
Q 011919 436 ARFMLKKR 443 (475)
Q Consensus 436 ~~~m~~~~ 443 (475)
+++.++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-14 Score=125.51 Aligned_cols=222 Identities=15% Similarity=0.048 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CCC----hhhHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL--YPD----IITYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 204 (475)
.+..+...+...|++++|...|++..+.. .+...|..+..++...|++++|.+.+++...... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444455555555555555544433 3444455555555555555555555554433210 001 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+...+...|++++|...|++..+.. |+. ..+.+.|++++|.+.++++.... +.+...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHh
Confidence 4444444455555554444444431 221 12333344444444444444421 12233344444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...|..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444332 113333444444444444444444444444433211 2333444444444444444444444
Q ss_pred HHHH
Q 011919 365 SKML 368 (475)
Q Consensus 365 ~~m~ 368 (475)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=2.2e-14 Score=123.17 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+.+.|++++|...|++..+.. |.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3344444444444444444444444444421 2333444444444444444444444444444332 11233344444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 314 KGFCVE-----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 314 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.++... |++++|...+++.++..+. +...+..+..+|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 6666666666666654432 34556666666666666666666666666654 455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
..++...|++++|...+++..+.. |.+...+..+...+.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666653 235566666666666667776666666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.8e-14 Score=123.71 Aligned_cols=197 Identities=17% Similarity=0.066 Sum_probs=91.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344445555555555555555555555554433 3344455555555555555555555555555443 22344555555
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 242 DGICRL-----------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 242 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
..|.+. |++++|...+++..+.. |.+...|..+..++...|++++|+..|++..+.. .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 555555 55555555555555432 2234445555555555555555555555555443 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
.+..++...|++++|...|+...+..+. +...+..+...+...|++++|.+.+++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555443321 334444445555555555555555444
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.1e-13 Score=130.63 Aligned_cols=353 Identities=11% Similarity=-0.060 Sum_probs=237.8
Q ss_pred CCCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CccCHHhHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQ-------SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----G---CVVSVKMMKVI 135 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l 135 (475)
..++.+.|+..|..+... ..-+....+|..+..++...|+++.|...++...+. . ......++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 378888998887665321 122345678888999999999999999988876542 1 11234566655
Q ss_pred HHHHHH--cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 136 FNLCEK--ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL---FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 136 i~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
..++.. .+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 555554 357999999999988754 2345555555544 445678889999998887654 445666666655554
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--
Q 011919 211 N----AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-- 284 (475)
Q Consensus 211 ~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 284 (475)
. .|+.++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.. |.+..++..+..+|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH
Confidence 4 467889999999988765 4478889999999999999999999999998853 44566677666655432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHH
Q 011919 285 -----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYS 345 (475)
Q Consensus 285 -----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 345 (475)
+..++|...++...+.. +.+...+..+...+...|++++|...|++.++....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23567888888777653 3345677888999999999999999999999876544321 223
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 346 SLVV-ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 346 ~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
.+.. .+...|+.++|+..|.+..+. .|+...... ....+.++++...+.. +.+..+|..+...|.
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~---p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN---GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC---C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 3322 244779999999999999875 455332222 2234455666666654 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 011919 425 RKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|++.|++.++.+
T Consensus 442 ~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHCC-------------
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999876
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=9.1e-13 Score=117.41 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence 344444444555555555555555554421 33444445555555 555555555555555421 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011919 276 SVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 276 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555443 34445555555555 555555655555555544 23444555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 348 VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 348 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----CHHHHHHH
Confidence 555555 566666666666665543 33445555555555 666666666666666543 23455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
...|.+ .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666 666666666666666655
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.4e-13 Score=122.43 Aligned_cols=252 Identities=12% Similarity=0.025 Sum_probs=147.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+......+...|++++|+..|++..+... .+...+..+...|...|++++|.+.++++.+...........|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34444555566666666666666655431 23335555556666666666666666666552111111123355666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 224456666666677777777777777666655322 3455555552333445777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CCC----chhhHHHHHHHHHhcCCHHHHH
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL-SSV----DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+.|+++.+.. +.+...+..+...+...|+ .++|...+++..+.... |.+ ...+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777642 2235556666666666666 77777777777664211 110 1256777888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 434 KLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 434 ~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+.++++++.. |.++.....+....
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHC---
T ss_pred HHHHHHHhcC-ccHHHHHHHhhhhh
Confidence 8888888876 55555555544443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.7e-13 Score=117.67 Aligned_cols=201 Identities=14% Similarity=0.038 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 444555555555666666666666555532 2344555555556666666666666666555442 224455555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
.+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666665522222 33455666666666677777777776666542 223556666666667777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777766643 1245566666667777777777777777776654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.5e-13 Score=116.01 Aligned_cols=200 Identities=10% Similarity=-0.038 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444445555544444444322 2233444444444444444444444444444432 12344444444444
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 245 CRL-GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
... |++++|.+.++++.+. ...+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 444 5555555555444441 0111223344444444444444444444444444331 112333444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
+|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444333221123333333334444444444444444443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=5.9e-13 Score=116.99 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=114.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455556666666666666666666665433 3345556666666666666666666666665543 2245566666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
|...|++++|.++++++.+. ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666551 0112344555556666666666666666666655542 223445555555566666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665554332 23444555555555566666666666555543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.2e-13 Score=121.17 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIK 207 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~ 207 (475)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..... ++.. .|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 3334445555566666666666555433 1233455555555555666666666655555421 2211 2455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+.. +.+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 1234455555555555555555555555554421 23334444444122223355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVV 333 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~ 333 (475)
++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++..
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55555555554432 1123333444444444444 444444444443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=9.5e-14 Score=121.27 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3445555555666666666666666665532 3345555556666666666666666666655542 22455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654422 44556666677777777777777777766542 234566666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+...+..
T Consensus 177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 7777777777654 2256677777777777788888888877777765 444444443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2e-12 Score=115.17 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..++..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6678888999999999999999999999983 356778888999999 999999999999999876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011919 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999999876 66788889999999 999999999999999875 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 381 VMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.+. ...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 77778887 899999999999999875 55778889999999 9999999999999998862 66788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011919 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...+.+ .|+.++|.+..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHH
Confidence 88899998 9999999877654
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.3e-14 Score=126.72 Aligned_cols=196 Identities=9% Similarity=-0.107 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---ccccHHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444321 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|...++++.+. .|+.......+..+...|++++|...++........ +...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHH
Confidence 4444444444444444432 122222222222333344444454444444332211 11112 2333444444444555
Q ss_pred HHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 362 KLFSKMLASGVK--P-DGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 362 ~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.+.+..+.... | +...+..+...+...|++++|...+++..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 555444322100 0 0234444555555555555555555555543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1.3e-12 Score=112.43 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3344445555555555555555555554432 2334445555555555555555555555554432 22344455555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011919 314 KGFCVE-GNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 314 ~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
..+... |++++|...++.+.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 56666666555555521112 23445555666666666666666666665532 1234555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++|...++++.+... ..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 6666666666665431 0244555555556666666666666666665543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.2e-14 Score=126.04 Aligned_cols=245 Identities=10% Similarity=-0.081 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 143 RLANEAMWVLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
|++++|+..|+++.+... +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443211 0123344444455555555555555555544432 233444555555555555555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 220 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..|++..+.. +.+..++..+...|.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555432 1234455555555555555555555555555431 2222222233333444555555555544443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 300 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
.. +++...+ .++..+...++.++|...++......... +...+..+...|...|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 1222222 24444445555555555555554332110 1344555666666666666666666666643 2321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 112233444555555555444
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=3.5e-13 Score=125.29 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=111.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...|+.+..++.+.|++++|++.+++..... +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3456666666666677777777777666543 3445566666666666664 66666666666665422 5566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV-EGN 321 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~ 321 (475)
++.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++.+... -+...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 6666666666666666666643 34556666666666666666666666666665432 244555555555555 333
Q ss_pred HHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH
Q 011919 322 LDEA-----YQLIDKVVAGGSVSSGGCYSSLVVELVRTK--RLKEAEKLFSKM 367 (475)
Q Consensus 322 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 367 (475)
.++| +..+++.+..... +...|+.+...+...| ++++|++.+.++
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 3444 2444444443322 2334444444444444 344444444444
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.1e-13 Score=124.15 Aligned_cols=233 Identities=11% Similarity=-0.001 Sum_probs=169.9
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
+...|..+..++.+.|++++|+..|++..+.. +-+...|+.+..++...|+ +++|++.|++..... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34566677777888888888888888887654 3466778888888888886 888888888887755 45677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cC
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KG 285 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 285 (475)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887653 377788888888888888888888888888753 4567778888888887 55
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---
Q 011919 286 MMKEA-----LGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--- 355 (475)
Q Consensus 286 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 355 (475)
..++| +..+++..... +-+...|..+...+...| ++++|.+.+.++ +.+ ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777776653 224567777777777777 578888888777 322 234566777777777653
Q ss_pred ------CHHHHHHHHHHH-HH
Q 011919 356 ------RLKEAEKLFSKM-LA 369 (475)
Q Consensus 356 ------~~~~a~~~~~~m-~~ 369 (475)
..++|.++|+++ .+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 246777777776 43
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.1e-13 Score=117.96 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444455555555554444322 2234444444444445555555555554444432 123444444445555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555444421 2233444444444444444554444444444331 12333344444444444444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
...++++.+.... +..++..+...|...|++++|.+.++++.
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444333211 23334444444444444444444444444
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.3e-13 Score=129.02 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV--K---PDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~ 377 (475)
.+..+...+...|++++|...+++..+.... . ...++..+...|...|++++|.+.+++..+... . ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555556666666666666666665442110 0 122566677777777777777777776654210 0 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+.+++.++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5666677777788888888887776653110 01123467777788888888888888888877553
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.5e-13 Score=128.28 Aligned_cols=299 Identities=12% Similarity=0.036 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLV 235 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 235 (475)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554432 111 134445555555555555555555544321 111 1133
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALG 292 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~ 292 (475)
++..+...|...|++++|...+++..+..... .....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45555556666666666666665554421000 0012345555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHH
Q 011919 293 ILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 293 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.+++..+. +..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235566667777777777777777776542110 1 12357777778888888888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 363 LFSKMLAS----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 363 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
.+++..+. +-.+. ..++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776642 11111 346667777788888888888888877653110 11124567778888888888888888
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 011919 435 LARFMLKK----RI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 435 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+++.++. +. +....++..+...+...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887654 11 12234566677777777765
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.2e-12 Score=125.27 Aligned_cols=340 Identities=11% Similarity=0.028 Sum_probs=212.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC----
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP---SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR---- 143 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 143 (475)
.++.+.|.+.|.-.... +. ...+..+...+...|++ ++|.+.++...+. +...+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-GY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-TC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 56777788777776544 22 22233344444445666 7888887776643 4555655666444444
Q ss_pred -CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 144 -LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI---AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 144 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.++++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 67788888888877553 336666777777665433 3444444444333 3556666777777777554444
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHH
Q 011919 220 GLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALG 292 (475)
Q Consensus 220 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 292 (475)
.....+.+.-...+...+..|...|.+.| +.++|++.|++..+.+ +++...+..+...|... +++++|+.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 43332222111223337788888888888 8999999999998865 46666656677777554 68999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHH
Q 011919 293 ILDRMEALGCAPNRVTISTLIKG-F--CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-----RLKEAEKLF 364 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~ 364 (475)
.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 998887 43 44555666555 3 46889999999999998877 5566777777776 55 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHH
Q 011919 365 SKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLA 436 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 436 (475)
++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......|...|.. ..+.++|..++
T Consensus 311 ~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 311 EKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 8876 3 355666666666655 338999999999998876 34556777777764 45899999999
Q ss_pred HHHHHcCC
Q 011919 437 RFMLKKRI 444 (475)
Q Consensus 437 ~~m~~~~~ 444 (475)
+...+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99988883
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=7.1e-13 Score=126.97 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCCcHHH
Q 011919 201 TYVSMIKGFCNAG---RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL----GSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|.++|++.. .+ +...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHH
Confidence 4444444444444 4444555554444444 22333333444444333 34445555554444 21 2223
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCChhhHH
Q 011919 274 YTSVIQI-F--CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG-----NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 274 ~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+..+... + ...+++++|+..|++..+.| +...+..|-..|. .| ++++|...|++.. .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 3333333 2 23444555555554444443 3333333333333 22 4445555444444 21 223333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011919 346 SLVVELVR----TKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 346 ~li~~~~~----~g~~~~a~~~~~~m~~~~ 371 (475)
.|...|.. ..++++|.+.|++..+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 34333333 124445555554444433
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=6.4e-13 Score=121.81 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=155.3
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALL 241 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll 241 (475)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444555555555555444332 111 233444445555555555555555443321 101 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 298 (475)
..|...|++++|.+.+++..+..... .....++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56666666666666665544321000 0012245555566666666 666666665543
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 299 AL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 299 ~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
.. +..+ ....+..+...+...|++++|...+++..+... .....++..+...+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1111 133566666777777888888887777654311 1112367777888888888888888888776
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 369 ASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 369 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+... ..+ ..++..+...+...|++++|...+++..+... .+.....++..+...|.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4210 111 45667777788889999999998888765411 011124577788888999999999999999888
Q ss_pred HcC
Q 011919 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.9e-13 Score=126.16 Aligned_cols=266 Identities=15% Similarity=0.086 Sum_probs=161.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQ 279 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~ 279 (475)
..+...|++++|...|++..+.+.. +. ..+..+...|...|++++|.+.+++..+.. ...+....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3444444444444444444443211 11 234444444445555555555544443310 000112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC--
Q 011919 280 IFCGKGMMKEALGILDRMEAL----GC-APNRVTISTLIKGFCVEGN-----------------LDEAYQLIDKVVAG-- 335 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~~~~-- 335 (475)
.|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544322 10 1123345555666666666 66666666665432
Q ss_pred --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 336 --GS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 336 --~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 11 11234688888999999999999999998875311 112 23677888899999999999999998876421
Q ss_pred C---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 408 L---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-----WLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 408 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
. +.....++..+...+...|++++|.+.+++.+.... ......+..+...+.+.|++++|.+.++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 001256788899999999999999999999886521 12234778899999999999999887653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=7.1e-13 Score=125.16 Aligned_cols=301 Identities=14% Similarity=0.006 Sum_probs=198.3
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC-CC
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLY-PD 198 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 198 (475)
....+......+...|++++|...|++..+.+. .+ ...+..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344445555667777777777777777766431 12 245667777777777777777777765331 111 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-AN----LVAYSALLDGICRLGS--------------------MERA 253 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~--------------------~~~a 253 (475)
..++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 445666777777888888888877766543100 11 3467777788888888 8888
Q ss_pred HHHHHHHHhcC--C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011919 254 LELLGEMEKEG--G-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APN----RVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 254 ~~~~~~~~~~~--~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 325 (475)
.+.+++..... . ..+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88887765420 0 0112244677778888888999999888887764210 111 23677788888899999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011919 326 YQLIDKVVAGG----SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 395 (475)
...+++..... ..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988876431 111 145678888889999999999999988765311 111 45677788888899999999
Q ss_pred HHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHH
Q 011919 396 FCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 396 ~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.+.+++..+. +.. +....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhH
Confidence 9999987754 211 123556777777777777653
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=5.9e-13 Score=120.80 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GCA 303 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 303 (475)
.++..+...|...|++++|...++++.... ...+....++..+...|...|++++|...+++..+. +..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444445555555555444443310 000122334444555555555555555555554432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 011919 304 P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----- 370 (475)
Q Consensus 304 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 370 (475)
| ....+..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2334455555566666666666666655442 1111 2345666666667777777777777666542
Q ss_pred --CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 371 --GVKPDGL-------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 371 --~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
...+... .+..+...+...+.+.++...++...... +....++..+...|.+.|++++|.+++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS---PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------C---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11222222334455556666666665532 23667888899999999999999999988876
Q ss_pred c
Q 011919 442 K 442 (475)
Q Consensus 442 ~ 442 (475)
.
T Consensus 307 l 307 (311)
T 3nf1_A 307 S 307 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=4.5e-11 Score=108.43 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=116.8
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-------KGDM-------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 3455566666655542 3554 6666666666552112344456666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH-hcCCHH
Q 011919 212 AGRLEDACGLFKVMKRHGCAAN-LV-AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 288 (475)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666654 222 22 56666666666666666666666666532 223333332222211 246666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVS--SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
+|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..+... ..| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666555432 2234455555555555566666666666655542 222 23445555555555566666666655
Q ss_pred HHHH
Q 011919 366 KMLA 369 (475)
Q Consensus 366 ~m~~ 369 (475)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=9.2e-11 Score=106.36 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGIC-------RLGSM-------ERALELLGEMEK-EGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 280 (475)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHH
Confidence 45555666555532 234555555555543 23554 666666666665 11 2344566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCH
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPN-RV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 357 (475)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.+.. +...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 66666666666666666653 332 22 5666666666667777777777766664432 2333333222211 25677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++|.++|++..+.. +-+...|..++..+.+.|++++|+.+|++..+.. ..|......|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666542 1245566666666667777777777777777653 222124556666666666777777777777
Q ss_pred HHHHHcC
Q 011919 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+++++..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7776654
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=3.2e-11 Score=113.12 Aligned_cols=299 Identities=8% Similarity=-0.014 Sum_probs=199.8
Q ss_pred HHHHcCCHHHHHHHHHhcccC--CC--CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHhccCCCCCChh
Q 011919 138 LCEKARLANEAMWVLRKMPEF--DL--RPDTIIYNNVIRLF--CEKGDMIAAD-----------ELMKGMGLIDLYPDII 200 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~~~ 200 (475)
.+.+.+++++|..+++++.+. .+ .++...|-.++..- .-.+..+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345677788888877776542 22 22333333333321 1122333333 5555554321 1111
Q ss_pred h------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 011919 201 T------YVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-- 267 (475)
Q Consensus 201 ~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 267 (475)
. +......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.....
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 222455677889999999999988764 1111 34678888899999999999999998877531111
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C
Q 011919 268 --SPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----G 335 (475)
Q Consensus 268 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~ 335 (475)
+....+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112456788888999999999999999887643 1111 124677888899999999999999999877 3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 011919 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~ 408 (475)
.......++..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 31334667888999999999999999999988753 111112335566677788888 66676666655 322
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
| .....+..+...|...|++++|.+.+++.++.
T Consensus 336 ~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 A-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 24567888999999999999999999998764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.9e-12 Score=117.37 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-Chh
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL----GCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SGG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~ 342 (475)
++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++...... .+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444555555555555555555544321 100 0122445555555666666666666655543210 00 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++..+...|...|++++|.+.+++..+. +-. ....++..+...+...|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4556666666677777776666665532 100 11235556666667777777777777766654
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=7.5e-12 Score=120.62 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 444455555555555555 55555555554432 223444555555555555555555555555443 233444455
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 011919 312 LIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKMLASGVK- 373 (475)
Q Consensus 312 li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~- 373 (475)
+...+... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 5566666666665554322 345555566666655 6666666666666654210
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 374 -PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 374 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
-+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 255666666666666777777777777666653 224556666666666666666666543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.9e-11 Score=114.63 Aligned_cols=298 Identities=7% Similarity=-0.083 Sum_probs=204.5
Q ss_pred HHhcCChhHHHHHHHHhccC--CCCCC--hhhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcC---
Q 011919 174 FCEKGDMIAADELMKGMGLI--DLYPD--IITYVSMIKG--FCNAGRLEDAC-----------GLFKVMKRHGCAAN--- 233 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~g~~~~--- 233 (475)
+.+.+++++|..+++++.+. .+..| ...|-.++.. ....++.+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999988552 22223 3333444332 12233344444 66666554311111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----
Q 011919 234 -LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-AP---- 304 (475)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p---- 304 (475)
...+......+...|++++|.+.+++..+.....+. ...++..+...|...|++++|+..+++..+.-. .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566788899999999999999873111111 346788899999999999999999988764310 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 011919 305 -NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV----S-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GV-K 373 (475)
Q Consensus 305 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~ 373 (475)
...++..+...|...|++++|...+++..+.... + ...++..+...|...|++++|.+.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2356788888999999999999999988753211 1 1247888999999999999999999998862 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL--SSVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~ 448 (475)
....++..+...+...|++++|...+++..+.... .+.....+..+...+...|+ +++|+.++++. ...+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence 23567888889999999999999999988764210 01123336778888888998 77777777665 1212334
Q ss_pred hhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 449 PYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..+..+...+.+.|+++.|.+..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5677899999999999999877653
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.6e-11 Score=118.28 Aligned_cols=215 Identities=11% Similarity=-0.011 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667777777776632 45788899999999999999 99999999998764 3357889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 011919 328 LIDKVVAGGSVSSGGCYSSLVVELVRT---------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--------G 390 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 390 (475)
.|++..+.. |+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999999876 5568899999999999 99999999999999763 33578888888899888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
++++|...|++..+.......+...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|+.++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999742101478899999999999999999999999999987 67778889999999999999888754
Q ss_pred c
Q 011919 471 P 471 (475)
Q Consensus 471 ~ 471 (475)
.
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=5.8e-11 Score=98.72 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.+|..+...+...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHH
Confidence 344444444444444444444444444432 1134444444444444444444444444444321 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (475)
.+...++++.+...+.+..... +.+...+..+...+.+.|++++|++.|++..+.+.. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4444444444444444444331 123334444444444444444444444444443321 33344444444555555555
Q ss_pred HHHHHHHHHH
Q 011919 360 AEKLFSKMLA 369 (475)
Q Consensus 360 a~~~~~~m~~ 369 (475)
|.+.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=5.3e-11 Score=98.95 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=84.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555554433 3344445555555555555555555555554432 123444444555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
.+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555554432 2344445555555555555555555555555432 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 011919 323 DEAYQLIDKVVA 334 (475)
Q Consensus 323 ~~a~~~~~~~~~ 334 (475)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-11 Score=112.10 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI-------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G-C 230 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~ 230 (475)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444445555555555555555544331 11222334444555555555555555555554432 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+....++..+...|...|++++|.+.++++.+.. ...+.....+..+...+...|++++|.+++++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555555556666666666555554420 001122344555555666666666666666555442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 011919 301 -GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-------GSVSSG-------GCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 301 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
+..| ...++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2234555556666666666666666665532 111111 11222222233334444445555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....... ..+..++..+...|...|++++|.+.+++..+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5544321 223456666777777777888777777776653
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=4.3e-09 Score=104.46 Aligned_cols=406 Identities=11% Similarity=0.007 Sum_probs=263.6
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CccCHHh
Q 011919 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN---PSIIIDVVEAYKEEG-CVVSVKM 131 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 131 (475)
.+...+...++.+ ..+....+..+|..+... ++.+...+...+..-...++ .+.+..+|+...... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4677777777765 345666777777776543 55677777777877777777 888999998887754 2478888
Q ss_pred HHHHHHHHHHcCCH--------HHHHHHHHhccc-CCC-CC-CHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011919 132 MKVIFNLCEKARLA--------NEAMWVLRKMPE-FDL-RP-DTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 132 ~~~li~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~ 191 (475)
|..-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+..+|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766665543 334467776553 354 34 4467777766543 2345677888888887
Q ss_pred cCCCCCChhhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---------------c-----C---
Q 011919 192 LIDLYPDIITYVSMIKGFCNAGR-------------LEDACGLFKVMKR--HGCA---------------A-----N--- 233 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~-------------~~~a~~~~~~m~~--~g~~---------------~-----~--- 233 (475)
......-..+|......-...+. ++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 52211122344333222211111 2233344443321 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCC
Q 011919 234 LVAYSALLDGICRLG-------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-GILDRMEALGCAPN 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 305 (475)
...|...+..--..+ ..+.+..+|+++... ++-....|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333322 123456678888764 3556778888888888889988997 999998865 4456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSS------------GGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
...+...+....+.|++++|.++|+.++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667778888889999999999999987631 0121 235777788888889999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 365 SKMLAS-GVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 365 ~~m~~~-~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+. + .+....|...+..-.+ .++.+.|.++|+...+.- | .+...|...+......|+.+.|..+|++.+..
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--A-TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999876 2 1222333322222223 356999999999998863 2 35677788888888899999999999999887
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 443 RIW--LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ -....|...++.-.+.|+.+.+.++.+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 244578888888899999998888764
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=3.1e-10 Score=106.09 Aligned_cols=232 Identities=9% Similarity=-0.020 Sum_probs=168.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---C-CcHHHHH
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGC-AA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC---S-PNVVTYT 275 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~ 275 (475)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+..... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556788999999999998876421 12 24577888889999999999999998876531111 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 011919 276 SVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----GGSVSSGGCYS 345 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 345 (475)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+++..+ ..... ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 8888999999999999999887642 1111 234677788889999999999999999877 44333 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGV---KPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.+...|.+.|++++|.+.+++..+... .|. ...+..+...+...++ +++|..++++ .+..+ .....+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~-~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHA-YIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChh-HHHHHHHH
Confidence 899999999999999999999886321 122 2345555556667777 6667666665 32222 23456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+...|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=5.8e-10 Score=104.04 Aligned_cols=298 Identities=11% Similarity=0.033 Sum_probs=187.2
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCC----hhhHHHHH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPD----IITYVSMI 206 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li 206 (475)
...+...|++++|...+++........+. ..++.+...+...|++++|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556678888888888776654322222 1455666777788888888888877654210 111 12355667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRH----GCA--A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788888888888888876653 221 2 2345666778888889999999988887764221111 23456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPN--RVTIS----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li 348 (475)
...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888888999999998888764311111 11111 233446788999999998888765443211 22456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 349 VELVRTKRLKEAEKLFSKMLAS----GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
..+...|++++|.+.+++..+. |..++. ..+..+..++...|+.++|...+++..+... .. ..+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~----~~----g~~~~~ 332 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN----RT----GFISHF 332 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HH----CCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----cc----cHHHHH
Confidence 8888889999999888877542 222222 2455566677888999999988888776421 00 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...| +....+++.+....
T Consensus 333 ~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTT
T ss_pred HHcc--HHHHHHHHHHHhCC
Confidence 3444 45566666666554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=4.8e-10 Score=104.60 Aligned_cols=298 Identities=12% Similarity=-0.005 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AAN----LVAY 237 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~ 237 (475)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778999999999999877644222222 456677788899999999999998765311 112 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEG--GDCS--P-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA--P--NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 308 (475)
..+...+...|++++|...+++..+.. .+.+ | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 677888999999999999999886531 1111 2 3455677888899999999999999988754221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYS-----SLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLAC 379 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 379 (475)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++..+....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777888899999999999999988753211111 1122 233457799999999999998875432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CCh
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQG 448 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~ 448 (475)
..+...+...|++++|...+++..+.... +.....++..+...+...|+.++|.+.+++.+.. |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 66778889999999999999988654211 1011236777788889999999999999888753 221 112
Q ss_pred hhHHHHHHHHHhcCCH
Q 011919 449 PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~ 464 (475)
.....++..+...+..
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 2345566666666665
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.9e-10 Score=95.34 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555666666666666655432 2344555555555566666666666665554432 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555442 2244555555555555555555555555555432 23344455555555555555555
Q ss_pred HHHHHHHH
Q 011919 291 LGILDRME 298 (475)
Q Consensus 291 ~~~~~~m~ 298 (475)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.8e-10 Score=106.39 Aligned_cols=232 Identities=10% Similarity=-0.074 Sum_probs=171.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCS---PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC-AP-NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p-~~~~ 308 (475)
......+...|++++|...|++..+.....+ ....++..+...|...|++++|...+++..+. +. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567889999999999999886421111 13457788899999999999999999887642 11 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAG----GSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 378 (475)
++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .. .....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 778888999999999999999988753 111 1235688899999999999999999999886 42 223667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCChhhHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRI-WLQGPYVD 452 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~ 452 (475)
+..+...+.+.|++++|...+++..+..... +.....+..+...+...|+ +++|+..+++ .+. +.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888889999999999999999998753221 1123445666666777788 7777777766 222 23334667
Q ss_pred HHHHHHHhcCCHhHHhhcccc
Q 011919 453 KIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.+...|.+.|+++.|.+..+.
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999876643
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.9e-08 Score=99.78 Aligned_cols=376 Identities=9% Similarity=-0.006 Sum_probs=247.8
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-cc-CHHhHHHHHHHHH--
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP--------SIIIDVVEAYKE-EGC-VV-SVKMMKVIFNLCE-- 140 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~-- 140 (475)
...+..+|..........|++..+...+....+.++. +.+.++|+.... .|. .+ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 6777788877755432347888888888877665543 345567776553 455 44 4577877776544
Q ss_pred -------HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC-------------ChhHHHHHHHHhcc--CCC---
Q 011919 141 -------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG-------------DMIAADELMKGMGL--IDL--- 195 (475)
Q Consensus 141 -------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------------~~~~a~~~~~~~~~--~~~--- 195 (475)
..++++.+..+|++........-..+|.....---..+ +++.|...+.++.. .++
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 23457889999999986322112234433222111111 12233344433211 011
Q ss_pred -C-----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 196 -Y-----------P--D------IITYVSMIKGFCNAG-------RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 196 -~-----------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
+ | + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 1 0 123444444332222 123456788888775 3447888888888889999
Q ss_pred ChHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011919 249 SMERAL-ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---------CAPN------------R 306 (475)
Q Consensus 249 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~ 306 (475)
+.++|. ++|++.... +|.+...|-..+...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999997 999999874 35677778888888999999999999999987641 0132 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
..|...++...+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+..++. ..-+...+...+.-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 357777888888899999999999998861111233343333333343 4589999999999876 23355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
....|+.+.|+.+|+........+......|...+..-.+.|+.+.+.++.+++.+.- |+......+.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 7888999999999999998653222345788889888889999999999999999886 34344444443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=3.3e-10 Score=93.81 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666677777777777777777776543 3456666777777777777777777777776653 33566666777777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766642 3455566666666667777777777776666543 2344555666666666666666
Q ss_pred HHHHHHHHHh
Q 011919 325 AYQLIDKVVA 334 (475)
Q Consensus 325 a~~~~~~~~~ 334 (475)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=8.6e-11 Score=104.68 Aligned_cols=208 Identities=13% Similarity=0.054 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GC 302 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 302 (475)
..++..+...|...|++++|...++++.+.. ...+....++..+...|...|++++|.+.+++..+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555566666555555554320 001123345555555666666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011919 303 -APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---- 370 (475)
Q Consensus 303 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 370 (475)
+.....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|.+.+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 112445556666666667777776666666543 1111 2455667777777777777777777776642
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 ---GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ---~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+.. ..+..+.......+....+.. +..+.. .+..++....++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112222 222222222222222222221 111111 11111224567888889999999999999999888753
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=8.3e-10 Score=95.17 Aligned_cols=208 Identities=9% Similarity=-0.106 Sum_probs=157.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.|+..+......+.+.|++++|.+.|++..+.. .+++...+..+..++...|++++|+..+++..+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 467888889999999999999999999998853 12677777778999999999999999999998764 225677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSV 381 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 381 (475)
+..++...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999886543 33 45788888899999999999999999865 565 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+...+... +..+++++...+. .+...|.... ....+.+++|+..+++.++.. |.+......+..
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLAS---SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTT---TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccc---CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 66666544 3445566655542 2344444443 334677899999999999887 555555554433
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=4.5e-10 Score=112.73 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++.++.+.. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455555555555555555555555555432 113445555555555566666666666555554322 3455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|...|++++|++.|++.++.. .-+...+..+..+|...|++++|++.|++..+.. +.+...|..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 6666666666666666665532 1234556666666666666666666666666643 22455666666666666666
Q ss_pred HHHHHHHHHHH
Q 011919 430 VEAAKLARFML 440 (475)
Q Consensus 430 ~~A~~~~~~m~ 440 (475)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.4e-10 Score=114.66 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=125.8
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677777888888888888888888877653 2356778888888888888888888888877654 445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877764 2357778888888888888888888888887753 34567777888888888888
Q ss_pred HHHHHHHHHHHH
Q 011919 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=8.5e-11 Score=104.73 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=77.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI------D-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 229 (475)
...++..+...+...|++++|.+.+++.... + .+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445566666666666666666666655432 1 1122345566666666666666666666665543 1
Q ss_pred -CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 230 -CAANLVAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 230 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.+....++..+...|...|++++|.+.++++.+. +...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223455666666777777777777777666552 000112344566666666677777777776666554
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2e-09 Score=92.74 Aligned_cols=198 Identities=12% Similarity=0.042 Sum_probs=133.2
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666777777888888888888877765533566666667778888888888888888877654 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+... .+. ..|..+...+.+.|++++|.+.|+++.+.. +. +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 888888888888888888777532 234 456777777888888888888888887742 22 35566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 66665443 33444444432 22334443333 2344567888888888877553
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=7.6e-09 Score=91.14 Aligned_cols=91 Identities=10% Similarity=-0.137 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQ-- 447 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 447 (475)
..+...|...|++++|...|+++.+.....+.....+..+..+|... |++++|.+.++++++.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 34445566666666666666666665322111334555666666544 67777777777777664 222
Q ss_pred -hhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 448 -GPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
......+...+.+.|+.+.+..+.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 123445555555666655554443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=2.2e-08 Score=88.43 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=151.3
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
..=.|++..++.-...+... ........+.++++..|+++.. + .-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc----H
Confidence 33468888888755544331 2223334456778878877642 1 1134333433333333 222 6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
+..|++..+.+ .++..++..+..++...|++++|++++.+....+. ..-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777776654 45566666778888888888888888888766431 01356677778888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 299 ALGCAP-----NRVTISTLIKGFC--VEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 299 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+. .| +..+...++.++. ..| +..+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 3455566665532 233 7888888888876654 3322233444477788888888888876654
Q ss_pred C-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 370 S-----GV----KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 370 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
. +. .-+..++..+|......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 10 2245566455555555565 7778888888764
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=6.2e-08 Score=85.58 Aligned_cols=183 Identities=7% Similarity=0.009 Sum_probs=114.8
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
|+..|+++...+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567777666554 45555556677777777888888888877765543 1255666777777888888888888888776
Q ss_pred hcCCCCCC-----cHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 262 KEGGDCSP-----NVVTYTSVIQIF--CG--KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 262 ~~~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
+. .| +..+...+..++ .. .+++.+|+.+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 35 234444444442 22 33778888888887654 344333344445777788888888888765
Q ss_pred HhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 333 VAGG---------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 333 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
.+.. -.-+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 5431 02245555455555555666 777888887765 4543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=9.3e-09 Score=79.87 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444443322 2233334444444444444444444444444332 12333444444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444321 1233344444444444444444444444443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.1e-08 Score=91.76 Aligned_cols=140 Identities=11% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLYPD-IITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 219 (475)
+++|...|++. ...|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 33455667777776666655331 11111 345556666666666666666
Q ss_pred HHHHHHHHCCC---Cc--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCC-C--cHHHHHHHHHHHHhcCCHHHH
Q 011919 220 GLFKVMKRHGC---AA--NLVAYSALLDGICRL-GSMERALELLGEMEKEGGDCS-P--NVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 220 ~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a 290 (475)
..+++..+... .+ -..+++.+...|... |++++|+..|++..+...+.. + ...++..+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66655543210 00 023444555555553 555555555555443110000 0 022344444445555555555
Q ss_pred HHHHHHHHH
Q 011919 291 LGILDRMEA 299 (475)
Q Consensus 291 ~~~~~~m~~ 299 (475)
+..|++..+
T Consensus 178 ~~~~~~al~ 186 (292)
T 1qqe_A 178 SDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=1.6e-08 Score=89.07 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=56.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C-cCHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-A-ANLVAY 237 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~~~ 237 (475)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+..++.+.|++++|...|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34445555556666666666666666665532 112 34555566666666666666666666665421 1 113445
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhc
Q 011919 238 SALLDGICR--------LGSMERALELLGEMEKE 263 (475)
Q Consensus 238 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 263 (475)
..+..++.+ .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555556666 66677777777666654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1.4e-08 Score=91.11 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChHHH
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAAN-LVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a 253 (475)
++++|.+.|++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777766665 33566677777777777766542 21111 45677777777777777777
Q ss_pred HHHHHHHHhcCCCC-CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 011919 254 LELLGEMEKEGGDC-SP--NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAP-N----RVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 254 ~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~ 324 (475)
+..+++..+..... .+ ...+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777665421000 00 123555566666664 66666666666554321000 0 2345555555666666666
Q ss_pred HHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 325 AYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
|...|++..+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666554322211 134445555555666666666665554
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=2.2e-08 Score=77.70 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4455555666666666666666665543 2245555556666666666666666666665532 23444555555556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665555432 22344444555555555555555555555443
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=5.2e-07 Score=86.81 Aligned_cols=354 Identities=10% Similarity=-0.021 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC-HHHHHHHHHhcccC-CC-CCCHhhHHHH
Q 011919 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEF-DL-RPDTIIYNNV 170 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 170 (475)
...|..++..+-. ++.+.+..+|+..... .|++..|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3344444444433 5566666666666553 3566666666665555442 23344555554432 32 2244555555
Q ss_pred HHHHH----hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCcC
Q 011919 171 IRLFC----EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-------------NAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 l~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+..+. ..++.+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 54432 23455666666666654211101112221111100 01122333444443332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 234 LVAYSALLDGICRLG--S-----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
...|...+..-...+ - .+.+..+|+++... ++.+...|-..+..+.+.|+.++|..++++.... |..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 345555444322221 1 34566788887764 2455677777777788888888898888888876 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
..+.. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..
T Consensus 246 ~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 246 MFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp SHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 22211 22222111221 22222110 001 1244666666666777888999999888 321 22
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 375 DGLACSVMIRE-LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+...|...... +...++.+.|+.+|+...+.. | .+...+...++...+.|+.+.|..+|+.+ ......|..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~-~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~ 389 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P-DSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDS 389 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 33444322211 122346888999999888763 2 23455666777777888888888888886 235677788
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011919 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.-...|+.+.+..+++
T Consensus 390 ~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 8877778888888877553
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=6e-08 Score=82.10 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=75.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
+..+|.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 6666777777777777777776643 3456667777777777777777777777776653 22455566665555444
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011919 320 GN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 320 g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
|. .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33 2334444444332 1222222333444555667777777777777644 566443
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=2.2e-07 Score=79.69 Aligned_cols=209 Identities=8% Similarity=-0.092 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|...|+++.+...+.+.-..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666777777777777777664221 1 13456666677777777777777777776642110000113333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
+..++...+.. .+ ..|..+...+...|+.++|...|+++++..+.. ...+...... +
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~l----~- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKRL----V- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHHH----H-
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHHH----H-
Confidence 33333332210 00 011122233344567777777777777654321 2222111100 0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
.+...+. .....+...+.+.|++++|...|+++.+.....+.....+..+..++.+.|++++|.+.+
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 011234456777888888888888888764221112356777888888888888888888
Q ss_pred HHHHHcC
Q 011919 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 8877765
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=6.2e-09 Score=83.08 Aligned_cols=144 Identities=10% Similarity=-0.026 Sum_probs=105.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++.. +-+...|..+...+...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3445567788888888777654321 33456677888888888888888888888653 235677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+|...|++..+.. +.+..+|..+...|.+.|++++|.+. +++.++.. |-++.++......+...|+
T Consensus 83 ~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888865 23677888888888888888776654 57788776 6677777777777777764
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.5e-07 Score=79.84 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG----NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
.+..+...|...+++++|+..|++..+.| +...+..|-..|.. + ++++|.+.|++..+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444443332 22333333333333 3 4444444444444433 223344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 349 VELVR----TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 349 ~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+- +...+..|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 44443 44555555555555543211 013444444444444 4455666666665555411 22344455
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRK-N-----HSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 443 (475)
...|... | ++++|.++|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555432 2 5666666666666555
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=5.5e-08 Score=82.33 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+..++.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|+++.+.. |.+..+|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6677777778888887777777764 2366777777777777888888888887777743 34566677776666554
Q ss_pred CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 285 GM--MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 285 g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
|+ .+.+...++.... ..|....+...-.++...|++++|...|++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 43 3334444444321 12222223333445556677888888888777644
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=2e-07 Score=79.05 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~ 226 (475)
..|...+++++|...|++..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~ 45 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAA 45 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHH
Confidence 33333333333333333333
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=2.2e-07 Score=79.62 Aligned_cols=203 Identities=12% Similarity=-0.013 Sum_probs=114.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANL-VAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~ 238 (475)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667788899999999999999999875311 1 1356788889999999999999999999986422 111 2444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFC 317 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 317 (475)
.+..++.+.|.. .+. .|..+...+...|++++|...|+++.+.. |+. .........
T Consensus 83 ~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH--
Confidence 555555543210 000 11122233344566666666666666542 222 111111000
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVL 393 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 393 (475)
..+...+. .....+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+.+
T Consensus 140 --------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 140 --------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp --------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcH
Confidence 00000000 01123455666777777777777777654 2331 34556666777777777
Q ss_pred HHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 7777777766654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=4.3e-08 Score=98.71 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=122.0
Q ss_pred HhcCChhHHHHHHHHhc--------cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 175 CEKGDMIAADELMKGMG--------LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...|++..+.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888776 322 4456677777778888888888888888877754 2366777778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877753 3456677777778888888888 88888777653 235567777777888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
..|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888877665432 24556666666655444
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=2.8e-08 Score=81.64 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FC 210 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 210 (475)
+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344455666666666666666665532 2345556666666666666666666666655432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..++..+|...+++..+.. +-+...+..+...+...|++++|...|+++.+... -..+...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122223455555555432 12355555555555555556665555555554310 001133455555555555555555
Q ss_pred HHHHHHH
Q 011919 291 LGILDRM 297 (475)
Q Consensus 291 ~~~~~~m 297 (475)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.7e-06 Score=77.11 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hhc---CC
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGK---GM 286 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 286 (475)
++|+.+++.++..... +..+|+.--..+...| ++++++++++.+.... |.+..+|+.--..+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3455555555544211 3334444444444444 5555555555555432 23333443332222 223 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------LK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 358 (475)
+++++++++.+.+.. +-+...|+.-.-.+.+.|.++ ++++.++.+++.++. |...|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 555555555555542 224444444444444555555 666666666655443 44445444444444444 66
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE-GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
++++.+++++... .-|...|+.+-..+.+.|+... +..+..++.+.+-..+.+...+..+.+.|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777776653 2355666666666666665333 4445555444320011256677777777777888888888888
Q ss_pred HHHHcCCCCChhhHHH
Q 011919 438 FMLKKRIWLQGPYVDK 453 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~ 453 (475)
.+.++--|.....|+.
T Consensus 283 ~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHTTCGGGHHHHHH
T ss_pred HHHhccChHHHHHHHH
Confidence 8776321455555553
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.2e-06 Score=78.15 Aligned_cols=221 Identities=10% Similarity=-0.005 Sum_probs=128.4
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC--CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH----Hhc---
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF----CEK--- 177 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 177 (475)
.+..+.|+++.+.+...+ +-+...|+.--..+...+ ++++++..++.+...+ +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344456777777766654 445556666556666666 7777777777776644 23455555544444 344
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC------
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGS------ 249 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------ 249 (475)
+++++++++++++.+.. +.+-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 56677777777776654 456666666666666666666 677777777665433 56666655555555554
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
++++++.++.+.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 666666666666543 4556666666666666555333 333444333221 1224455555555565666666666
Q ss_pred HHHHHHHh
Q 011919 327 QLIDKVVA 334 (475)
Q Consensus 327 ~~~~~~~~ 334 (475)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=5.1e-08 Score=87.08 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=104.0
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH-H
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS-M 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l 205 (475)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344555556666777777777777777776543 2355667777777777777777777777766542 44332222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+...+ ..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcC
Confidence 223455566666777777666653 335667777777777777777777777777664210 012456666777777777
Q ss_pred CHHHHHHHHHHHH
Q 011919 286 MMKEALGILDRME 298 (475)
Q Consensus 286 ~~~~a~~~~~~m~ 298 (475)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777766665543
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.6e-07 Score=94.65 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=143.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 210 CNAGRLEDACGLFKVMK--------RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 78899999999999998 432 3467788899999999999999999999998853 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++.++.+.. +...|..+..++.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998864 2356778889999999999999 9999999887644 5678999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 011919 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ 391 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 391 (475)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999998855 565 4566667777766555
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=5e-08 Score=80.11 Aligned_cols=162 Identities=10% Similarity=0.008 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-H
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-I 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~ 244 (475)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34455566667777777777777666543 3455666667777777777777777777665542 233333222211 1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 323 (475)
...+...+|...+++..+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22223334566666666542 3346666667777777777777777777766653322 2445666667777777777
Q ss_pred HHHHHHHHHH
Q 011919 324 EAYQLIDKVV 333 (475)
Q Consensus 324 ~a~~~~~~~~ 333 (475)
+|...|++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777766654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=4.7e-08 Score=87.31 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI-RE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~ 385 (475)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+........ ..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33444444455555555555555555544322 3344555555555555555555555554433 23332221111 12
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~ 464 (475)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|++.++++++.... .+...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 334444555555555555443 224455555555555555555555555555554411 1134455555555555555
Q ss_pred hHHh
Q 011919 465 ELIT 468 (475)
Q Consensus 465 ~~a~ 468 (475)
+.|.
T Consensus 272 ~~a~ 275 (287)
T 3qou_A 272 DALA 275 (287)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 4443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.2e-08 Score=81.40 Aligned_cols=139 Identities=9% Similarity=-0.014 Sum_probs=68.3
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..|++++|+..++...... +-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555544321 1123334445555555566666665555555433 3345555555555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-LGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
.|++..+.. +-+..++..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence 555555543 12445555555555555555544433 34444421 233444444444444433
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=7.8e-08 Score=94.99 Aligned_cols=152 Identities=8% Similarity=-0.055 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
+++++|.+.++...+.. +-+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666777776665543 3356666666677777777777777777766643 235666777777777777777777777
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 011919 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKE 263 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 263 (475)
++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7766543 3445666777777777777777777777766653 22556666677777777 7777777777777664
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=6.3e-08 Score=87.50 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=115.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN-AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.|++++|.+++++..+.. +. .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777665421 11 0222 46677776666654 456777888888888
Q ss_pred HHHHHHhcCC--CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 011919 256 LLGEMEKEGG--DCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---CAPN--RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 256 ~~~~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.|.+..+... +-+ .-..+|+.+...|...|++++|+..+++..+.- -.+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887665210 000 113466777777778888888888887765321 0111 2455566666666 77777777
Q ss_pred HHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 011919 328 LIDKVVAGGSVS-----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 328 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++.++..... ...++..+...|...|++++|++.|++..+... .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777665421110 134566666677777777777777776664311 111 1233444445555677777777
Q ss_pred HHHHHH
Q 011919 398 LYEDIE 403 (475)
Q Consensus 398 ~~~~~~ 403 (475)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777666
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=1.1e-07 Score=93.91 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=103.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887643 3457778888888888888888888888887753 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIE 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 403 (475)
+.+++..+.... +...+..+..+|...|++++|.+.+++..+.. ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 46677788888888888888888888887653 23456777777777777 88888888888888
Q ss_pred HcC
Q 011919 404 KIG 406 (475)
Q Consensus 404 ~~~ 406 (475)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=8.2e-08 Score=86.74 Aligned_cols=185 Identities=12% Similarity=0.028 Sum_probs=104.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC-CcHHHHHHHHH
Q 011919 208 GFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCS-PNVVTYTSVIQ 279 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~li~ 279 (475)
.|...|++++|...|.+..+. |-. .-..+|+.+...|.+.|++++|...|++..+.. .+-+ ....++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666554432 100 013356666667777777777777776654420 0000 11345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS-GGCYSSLVV 349 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~ 349 (475)
.|.. |++++|+..|++..+. |... ...++..+...|.+.|++++|...|++.... +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6766 7777777777766532 1000 1345667777778888888888888777653 11111 224556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDG------LACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~ 397 (475)
++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 3321 2233444444 4566555544
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=2.9e-06 Score=75.87 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCch
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLA----S-GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDS 413 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~ 413 (475)
++.+...|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|...+++..+. +..+ .-.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~-~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA-LIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT-THH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH-HHH
Confidence 44444445555555555555444442 1 11111 124444455555555555555555544432 1100 113
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNH-SVEAAKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 441 (475)
.+|..+..++.+.|+ +++|.+.+++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455556666666663 4666666555543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=4.7e-06 Score=74.54 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=90.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PN----RVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 311 (475)
+..+...|++++|.+++++..+.. ...|+.. .+..+...+...|++++|+..+++..+.... ++ ...++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 555666777777777777666532 1122211 2223444555566777777777666653211 12 224666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVA----G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPD-GLACS 380 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 380 (475)
+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66667777777777777766653 1 1111 1235666666677777777777776665532 22222 44566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 381 VMIRELCLGGQ-VLEGFCLYEDIEK 404 (475)
Q Consensus 381 ~li~~~~~~g~-~~~a~~~~~~~~~ 404 (475)
.+..++.+.|+ .++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666663 4666666655543
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=8.9e-07 Score=74.93 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+.... +...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 344555666667777777777776552 446666777777777777777777777776665422 455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 352 VRTKRLKEAEKLFSKMLASGVKPD---------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|.+.|++..+...... ...+..+..++...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777665421110 144555555666666666666666666654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.2e-06 Score=74.23 Aligned_cols=129 Identities=14% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666666553 3455666666666666666666666666666543 2355666666666666
Q ss_pred cCChHHHHHHHHHHHhcCCC------------CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 247 LGSMERALELLGEMEKEGGD------------CS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|++++|.+.|++..+...+ .. .....+..+..++...|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777776666653210 00 12255666666777777777777777776654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=5.9e-06 Score=73.88 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--hh
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV---SS--GG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 342 (475)
.+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444456666777777777777776665422111 112334555667778888998888888753221 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCch
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 413 (475)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+... .+..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999888731 00122 25778888889999999999999998775421 111125
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNHSVEA-AKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 441 (475)
.+|..+..+|.+.|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777887764
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.6e-05 Score=71.66 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=129.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc-C-C
Q 011919 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-G-D 179 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~ 179 (475)
.+...+..+.|+++.+.+...+ +-+..+|+.--..+...+ .+++++.+++.+.... +-+..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 4444556677888888888776 556677777666777777 5999999999998765 34777888877777776 6 8
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--------DACGLFKVMKRHGCAANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-- 249 (475)
+++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 899999999998765 567777776555555555555 888888888887543 77788877777777775
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 250 -----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCC
Confidence 678888888877753 4667777776666666554
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=7.5e-07 Score=68.39 Aligned_cols=110 Identities=7% Similarity=-0.120 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Confidence 456667778888888888888888887653 3356777788888888888888888888888865 236778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|++.|++.++.. |-+......+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888876 555555555443
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=1.1e-06 Score=66.82 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 3456666677777777777777777776542 2345666677777777777777777777777654 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
..+...|++++|.+.++++.... +.+...+..+...+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 77778888888888888777765 45555555555555443
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1e-06 Score=67.61 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHHHHHH
Confidence 3456667777777888888888888777642 2356667777777788888888888888877754 23567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
..+...|++++|.+.+++.++.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888776 55667777777777777764
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=4e-05 Score=73.70 Aligned_cols=344 Identities=8% Similarity=-0.083 Sum_probs=209.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-ccCHHhHHHHHHHHH----HcCC
Q 011919 72 SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN-PSIIIDVVEAYKEE-GC-VVSVKMMKVIFNLCE----KARL 144 (475)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~ 144 (475)
++.+.+..+|...... .|+..+|...+....+.++ .+.+..+++..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6677788888877653 2588888888877666553 45566777776653 42 446777877777654 3467
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHH-------------hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+..+|++........-...|......-. ..+.+..|..+++++...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999887321111112222211100 011233344444443321001133456555544322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 212 AG--R-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 212 ~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.+++++.... |.+...|.. |...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHhh
Confidence 21 1 345678999988753 456888988899999999999999999999984 334333332 2222
Q ss_pred CCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH--HHHH
Q 011919 285 GMMKEALGILDRMEALG---------CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS--LVVE 350 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~ 350 (475)
...++. ++.+.+.- ..+ ....|...+....+.++++.|..+|+.. ... ..+...|.. .+..
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111222 22222110 001 1245666667777788899999999999 321 223344432 2322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011919 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.. .++.+.|..+|+...+.- .-+...+...++-....|+.+.|+.+|+.+.+ ....|...+..-...|+.+
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHH
Confidence 22 336999999999998752 12344455667767788999999999999721 5678888888878889999
Q ss_pred HHHHHHHHHHH
Q 011919 431 EAAKLARFMLK 441 (475)
Q Consensus 431 ~A~~~~~~m~~ 441 (475)
.+.++++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888874
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=2.8e-06 Score=76.00 Aligned_cols=169 Identities=9% Similarity=-0.066 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CCC--h
Q 011919 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL---YPD--I 199 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 199 (475)
..+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|.+.+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677778888888888876655321111 11233455566677788888888777654221 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC-CCc
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---H-GCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC-SPN 270 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~ 270 (475)
.+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|.+.+++..+.. .+. ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777777778888888887777662 1 1111 12466777777777888888887777765421 000 011
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011919 271 VVTYTSVIQIFCGKGMMKEA-LGILDRME 298 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 298 (475)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45666677777777777777 55555543
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1e-06 Score=67.95 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHHH
Confidence 34566777777777788888888887777542 2256667777777777888888888888777754 2356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..++.+.|++++|.+.+++.++.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 788888888888888888877765 444556666666666555
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.4e-06 Score=70.17 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444445555555555555444332 2234444444445555555555555555544432 2234444455555555
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.++++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555555544
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=3.1e-05 Score=69.83 Aligned_cols=245 Identities=10% Similarity=-0.052 Sum_probs=115.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-ChHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-G-SMERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~a 253 (475)
.+..++|+++++++...+ +-+..+|+.--..+...| ++++++.+++.+.....+ +..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 334455666666665543 334444555555555555 366666666666655422 455555544444444 4 55666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
+++++.+.+.. +.+..+|+.-.-.+.+.|.++. .+ ...+.++++.+++++
T Consensus 145 L~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 145 IEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHH
Confidence 66666665532 3445555443333333333330 00 000124444444444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKR-------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-------------- 392 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------------- 392 (475)
+.++. |..+|+.....+.+.++ ++++++.+++++... .-|...|+-+-..+.+.|+.
T Consensus 195 ~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~ 272 (349)
T 3q7a_A 195 RVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272 (349)
T ss_dssp HHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-
T ss_pred HhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 44332 33344444444444433 455555555555432 12344444433333333332
Q ss_pred ------HHHHHHHHHHHHcC---CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 393 ------LEGFCLYEDIEKIG---FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 393 ------~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
........++.... ............+++.|...|+.++|.++++.+.++--+.....|+-..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 273 KLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11122222222111 0001356677888888888888888888888876554345555554433
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.6e-06 Score=65.83 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233344444444444444444444444444432 123344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 011919 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.6e-06 Score=66.44 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444444444455555555444444332 2334444444444444444444444444444432 1234444444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555554444444
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.9e-06 Score=66.47 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=56.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455555566666666666666666655433 2345555555566666666666666666655543 224555555666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 011919 243 GICRLGSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~ 262 (475)
+|.+.|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666555
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=3.2e-06 Score=68.07 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+...+...|++++|...|+...+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444455555666666666666666554322 34556666666667777777777776666542 2245566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL--LLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 440 (475)
.|++++|...+++..+... .+...+..+ +..+...|++++|++.+.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766532 233444333 333556677777777766554
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=5.6e-06 Score=65.59 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|...|++++|...|++..+.. |.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 4567778888999999999999999998763 3357788888889999999999999999999875 34678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.+|.+.|++++|.+.|++.++.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999876 4443
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1.4e-06 Score=73.05 Aligned_cols=100 Identities=9% Similarity=-0.152 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCch
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---FLSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 413 (475)
++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. ..+....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4455555555666666666655554431 1011 12334455555666666666666666655321 0010112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++..+...+...|++++|.+.+++.++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33566666677777777777777666643
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1.2e-06 Score=73.31 Aligned_cols=135 Identities=13% Similarity=0.001 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-- 304 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-- 304 (475)
..++..+...|...|++++|...+++..... .+ .+....++..+...+...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3444445555555555555555555443310 00 0112233444444555555555555555443321 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
....+..+...+...|++++|...+++.... +... ...++..+...+...|++++|.+.+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223344444444555555555555444321 1000 01223444455555555555555555443
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=4e-07 Score=80.98 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=52.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...+..+...+.+.|++++|.+.|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2344555555555555566666665555555543 2244555555556
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011919 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=3.4e-06 Score=73.50 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=118.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSV-------IQIFCGKGMMKEALGILDRMEALGCAPN------------- 305 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~------------- 305 (475)
..++...|.+.|.++.+.. |-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 4677777777777777643 3345566655 3444444444444444433322 1121
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 011919 306 ---------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD- 375 (475)
Q Consensus 306 ---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~- 375 (475)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1122345566777888888888888776654 322245555567778888888888887554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 376 -GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+..+-.++...|++++|+..|++.......|............++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667778888888888888888875332132234456667777888888888888888888876
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.3e-06 Score=65.65 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 2233334444444444444444444444444332 1123344444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=1.1e-06 Score=69.60 Aligned_cols=100 Identities=11% Similarity=-0.079 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHH
Confidence 34456667777788888888888888877653 2356677777777888888888888888888764 2356777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+|...|++++|.+.|++.++..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888888887764
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.3e-06 Score=71.45 Aligned_cols=121 Identities=7% Similarity=0.033 Sum_probs=76.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE-LCLGGQV--LE 394 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 394 (475)
..|++++|...++...+.... +...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666676677666654432 45566667777777777777777777766542 2245555556666 5567776 77
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|...++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777654 2355667777777777777777777777777665
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.9e-06 Score=75.06 Aligned_cols=128 Identities=8% Similarity=-0.044 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--RVTISTLIKG 315 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~ 315 (475)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 344555666666666666666665432 332244444456666666666666665433321 110 2245555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6667777777777776654332132 234445555666777777777777777654
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=9.1e-07 Score=70.17 Aligned_cols=98 Identities=15% Similarity=0.014 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. |.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 3345555555566666666666666665543 2245556666666666666666666666665532 23445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011919 279 QIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+|...|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666665554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=9.7e-07 Score=72.31 Aligned_cols=120 Identities=7% Similarity=0.009 Sum_probs=68.3
Q ss_pred hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--HH
Q 011919 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSM--ER 252 (475)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 252 (475)
..|++++|.+.+++..... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666655433 3445566666666666666666666666665543 2245555555555 5566666 66
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666542 234555566666666666666666666666554
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=7.4e-07 Score=79.21 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3444455555555555555555555555542 1244555555555555555555555555555432 23344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011919 279 QIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.++...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=4.1e-06 Score=76.50 Aligned_cols=146 Identities=11% Similarity=0.014 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+-.. ...+|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQAL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHHH--------HHHHHHHHHH
Confidence 45566666677777777777777777666542 211000 00011000000 1345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777653 2356667777777777788888888887777754 23566777777777777777
Q ss_pred HHH-HHHHHHHH
Q 011919 430 VEA-AKLARFML 440 (475)
Q Consensus 430 ~~A-~~~~~~m~ 440 (475)
++| .++++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 34555554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=9.2e-06 Score=60.81 Aligned_cols=110 Identities=10% Similarity=-0.078 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 446666777777778888888777776642 2355666777777777788888888888777764 235667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 8888888888888888877665 444444444433
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.6e-06 Score=68.62 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 3334444444444444444444444332 1234444444444444444444444444444421 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=4.2e-06 Score=76.44 Aligned_cols=124 Identities=6% Similarity=-0.188 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..+...|.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566666666666666666666665421111 4678888999999999999999999999975
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011919 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++.+.|+.+++.+
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999987 6778889999999999999988843
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00033 Score=62.82 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC-HHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEALG 292 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~ 292 (475)
++++.+++.+.....+ +..+|+.-...+.+.| ++++++.+++.+.+.. +.|..+|+.-.-.+...|. ++++++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4444455444443221 4444444444444444 2455555555555432 3444445444444444444 355555
Q ss_pred HHHHHHHc
Q 011919 293 ILDRMEAL 300 (475)
Q Consensus 293 ~~~~m~~~ 300 (475)
.++.+.+.
T Consensus 167 ~~~~~I~~ 174 (331)
T 3dss_A 167 FTDSLITR 174 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=5.8e-06 Score=64.85 Aligned_cols=98 Identities=8% Similarity=-0.142 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|...|++..+.+ +.+...|..+..++...|++++|...|++..+.. +.+...|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHH
Confidence 345556666777777777777777777643 2345666667777777777777777777777764 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011919 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...|++++|.+.|++.++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777788888887777777654
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.4e-05 Score=62.79 Aligned_cols=112 Identities=7% Similarity=-0.160 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccCHHH
Confidence 3456667777777888888888888887754 455 4666677777788888888888888877754 235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..++...|++++|.+.+++.++.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7788888888888888888888888765 4455555444443
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.38 E-value=0.00038 Score=62.39 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~ 326 (475)
+++++.+++.+.... |.+..+|+.-.-.+...+ .+++++.+++.+.+.. +-|...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998854 567888888777777777 4899999999999875 3477777777677777888 68999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRT--------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--- 389 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 389 (475)
+.++.+++.++. |...|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999987755 666777666666554 45788999999988763 33566666444444443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 390 --------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL---GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 390 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+.++++++.++++.+.. | .+...+-.++. .....|..+++...+.++++.. |.....|..+...+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--P-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--c-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 45788999999999875 2 23333322222 1224678889999999999887 66666666655544
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=7.5e-06 Score=63.52 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHH
Confidence 44556666777777777777777777766543 2245666667777777777777777777777754 2356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..++...|++++|.+.+++.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=1.6e-05 Score=59.44 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2244444555555555555555555555554432 123445555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011919 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=9.9e-06 Score=61.90 Aligned_cols=98 Identities=10% Similarity=-0.109 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777888888888888777653 2356677777777788888888888888877764 235677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011919 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++...|++++|.+.+++.++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777654
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=6.8e-06 Score=66.27 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
..+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..|++.++.. .-+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555555544322 34445555555555555555555555555432 11244444555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011919 387 CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=1.5e-05 Score=61.03 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 418 (475)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+.......+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46667778888888888888888887653 2346677778888888888888888888877643111011 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..++...|++++|++.|++.+... |++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHHH
Confidence 8888888999999999999888753 666655544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=7.3e-06 Score=64.27 Aligned_cols=88 Identities=15% Similarity=-0.011 Sum_probs=35.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++...|
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHcC
Confidence 333344444444444444443332 1133334444444444444444444444444321 222333333444444444
Q ss_pred CHHHHHHHHHHH
Q 011919 286 MMKEALGILDRM 297 (475)
Q Consensus 286 ~~~~a~~~~~~m 297 (475)
++++|...|+..
T Consensus 101 ~~~~A~~~~~~a 112 (142)
T 2xcb_A 101 DLDGAESGFYSA 112 (142)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=1.9e-05 Score=65.82 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+..+...+...|++++|...|++..+...... ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555666667777777777777665432211 144555555555555666665555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
. ..+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455555555555555555555555555542 123444555555554444444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=1.1e-05 Score=59.84 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~ 279 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHHH
Confidence 3334444444444444444444444332 1133344444444444444444444444444421 12 3344444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 011919 280 IFCGK-GMMKEALGILDRMEA 299 (475)
Q Consensus 280 ~~~~~-g~~~~a~~~~~~m~~ 299 (475)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=1.1e-05 Score=61.66 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHS 417 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 417 (475)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.......+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666677777777777777777776643 2355666677777777788888888877777653110011 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+...+...|++++|.+.++++++.. |+......+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 78888888888888888888888765 45665555554443
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=1.3e-05 Score=59.39 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSAL 240 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 240 (475)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666667777777777777777666543 3455666666777777777777777777766653 22 46666677
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhc
Q 011919 241 LDGICRL-GSMERALELLGEMEKE 263 (475)
Q Consensus 241 l~~~~~~-g~~~~a~~~~~~~~~~ 263 (475)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777664
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.2e-05 Score=73.20 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=101.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
+.+.+.|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+..+......+ ++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc
Confidence 4456677777777777777665322111 134556666777777777777666655421111 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 011919 271 V----VTYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GS-- 337 (475)
Q Consensus 271 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-- 337 (475)
. .+.+.+-..+...|+.++|..+++.... .+..+. ..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233345666666666655432 122222 234555666666666666666666655432 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 338 VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVK-P-D--GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1235556666666666666666666655431 111 1 1 123344444455556666666666666554
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.9e-05 Score=59.21 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 3334444444445555554444444432 1234444444555555555555555555444432 22344444444445
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 55555555555554444
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=3.1e-05 Score=59.25 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSV 277 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l 277 (475)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++..+......++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555554432 2234455555555555555555555555544321000010 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555554443
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=2.7e-05 Score=64.95 Aligned_cols=148 Identities=11% Similarity=-0.088 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HHH
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---------------RVT 308 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~ 308 (475)
....|+++++.+.++.-.... ......+..+...+...|++++|+..|++..+...... ...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 334455555555554222210 12344555566666677777777777776665321111 145
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+..+|...|++++|...++..++.... +...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 666666666777777777777776665322 45566666667777777777777777666542 1234445555555555
Q ss_pred cCCHHHHH
Q 011919 389 GGQVLEGF 396 (475)
Q Consensus 389 ~g~~~~a~ 396 (475)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55444444
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=1.9e-05 Score=63.56 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666666666666666666665543 3355566666666666666777766666666653 224666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 011919 243 GICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 677777777777777666653
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=2.6e-05 Score=60.37 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 85 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHHHH
Confidence 334444444444444444444444444332 1133444444444444444444444444444421 223344444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRME 298 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~ 298 (475)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.3e-05 Score=61.28 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AAN----LVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 240 (475)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444455555555554444332 22334444444444445555555554444443211 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011919 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9.7e-05 Score=69.86 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=143.7
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDI----------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAAN 233 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~ 233 (475)
...+.+.|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999998775422111 236788999999999999999999876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 011919 234 LV----AYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GC-- 302 (475)
Q Consensus 234 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 302 (475)
.. +.+.+-..+...|+++.|.+++....... .....-..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 23334444556789999999999886521 111223567788999999999999999999987643 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 303 AP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 303 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
.+ ....+..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888889999999999999999987643 11111 24566677778888999999999988764
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=5.2e-05 Score=59.42 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=53.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44455555555666666666666666555432 33 3445555555555666666666665555542 22445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 011919 239 ALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+|...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666666666665555
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=5.6e-05 Score=57.71 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..+...+...|++++|.+.|++..+.. |+. ..+..+..++...|++++|...++.+.+.....+.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556667777777777777776542 222 35556666777777888888777777775421100145667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++.+.|++++|.+.|+++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778888888888888777765
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.9e-05 Score=62.86 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchh
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSD 414 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~ 414 (475)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++..+... .+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555666666667777776666665532 1001 133455566667777788877777777664310 1111245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777778888888888888888877653
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=2.7e-05 Score=59.01 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5556677778888888888888887653 2256777777778888888888888888888865 23667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.|++++|++.+++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887654
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=5.3e-06 Score=62.58 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHH
Q 011919 354 TKRLKEAEKLFSKMLASGV--KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 431 (475)
.|++++|+..|++.++.+. +-+...+..+...|...|++++|...+++..+.. +.+..++..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 4566667777776665421 1123455566666677777777777777777654 2355667777777777777777
Q ss_pred HHHHHHHHHHcC
Q 011919 432 AAKLARFMLKKR 443 (475)
Q Consensus 432 A~~~~~~m~~~~ 443 (475)
|++.+++.+...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=3.1e-05 Score=73.91 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
....+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888889999999999999999987543322 467888889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~ 442 (475)
. ..+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.++++++.+ .++.|..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 3357788888889999999999999999998864 2366788888888888888887764 45666544
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=2.5e-05 Score=62.66 Aligned_cols=97 Identities=14% Similarity=-0.001 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLAS--------G---------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|+..++...+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455555566666666655555432 0 01123456667777788888888888888888764
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.+...|..+..+|...|++++|.+.|++.+...
T Consensus 94 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 2367778888888888888888888888888776
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=3.5e-05 Score=71.15 Aligned_cols=91 Identities=4% Similarity=-0.217 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3566667777777888888888888877754 2366777778888888888888888888887776 55666777777
Q ss_pred HHHHhcCCHhHHhhc
Q 011919 456 EHLKKSGDEELITNL 470 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l 470 (475)
.++.+.++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766543
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=3e-05 Score=58.77 Aligned_cols=91 Identities=9% Similarity=-0.111 Sum_probs=42.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+... -+...+..+..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444332 22344444444444455555555555554444321 134444444444555555
Q ss_pred hHHHHHHHHHHHh
Q 011919 250 MERALELLGEMEK 262 (475)
Q Consensus 250 ~~~a~~~~~~~~~ 262 (475)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1.8e-05 Score=75.92 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445555555555555443221 23444445555555555555555555544432 11234444444444455555555
Q ss_pred HHHHHHHHHc
Q 011919 396 FCLYEDIEKI 405 (475)
Q Consensus 396 ~~~~~~~~~~ 405 (475)
.+.+++..+.
T Consensus 94 ~~~~~~al~~ 103 (477)
T 1wao_1 94 LRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=0.00017 Score=54.88 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDG 243 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~ 243 (475)
+...+...|++++|.+.|++..+.. +.+. ..+..+..++...|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455555555555555554432 1112 24444555555555555555555555543211 1 3444555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011919 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=3.7e-05 Score=61.18 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-cCHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLY-PD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----CA-ANLVA 236 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-~~~~~ 236 (475)
+..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...+++..+.. -. .....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444444555555555555444321100 00 1234444444555555555555554443310 00 01233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555555555443
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=7.9e-05 Score=71.08 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------RVTISTLI 313 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li 313 (475)
+++++|.+.|+...... +.....|..+...+.+.|++++|+..|++..+...... ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555554433321 13456788889999999999999999999887532211 57888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (475)
.+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..+. .|+ ...+..+..++.+.++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 6788999999999999999999999999975 443 45677777777788887
Q ss_pred HHHH-HHHHHHHH
Q 011919 393 LEGF-CLYEDIEK 404 (475)
Q Consensus 393 ~~a~-~~~~~~~~ 404 (475)
+++. ..+..|..
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 7665 34444444
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=2e-05 Score=59.34 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=42.5
Q ss_pred cCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 177 KGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... -+...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555432 122334455555555555555555555555555432 24455555555555556666665
Q ss_pred HHHHHHHh
Q 011919 255 ELLGEMEK 262 (475)
Q Consensus 255 ~~~~~~~~ 262 (475)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=3.5e-05 Score=73.93 Aligned_cols=125 Identities=7% Similarity=-0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+..+...+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...|..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3334556778999999999999998863 335788999999999999999999999999987643 57788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 011919 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRE--LCLGGQVLEGFCLYED 401 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~ 401 (475)
.|++++|.+.|++..+... -+...+..+..+ +.+.|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999987531 123344444444 7778888888888765
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.00011 Score=67.89 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+|..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455555555555555666655555555532 2344555555555555566666665555555432 11344444444
Q ss_pred HHHHhcCCHHHHH
Q 011919 314 KGFCVEGNLDEAY 326 (475)
Q Consensus 314 ~~~~~~g~~~~a~ 326 (475)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444445444443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.00073 Score=66.03 Aligned_cols=173 Identities=8% Similarity=-0.061 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN----------LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK- 355 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 355 (475)
.++|++.++++...+. -+...|+.--.++...|+ ++++.+.++.+.+.+.+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 3455555555555421 122333333333333334 67777777777765544 4556666666666667
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-------
Q 011919 356 -RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG-QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK------- 426 (475)
Q Consensus 356 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 426 (475)
+++++++.++++.+... -+...|+.-...+.+.| ..+++.+.++++.+... .+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhccccccc
Confidence 56777777777776542 35566665555556666 67777777777776542 3667777766665552
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011919 427 -------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 427 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
+.++++++.+++++... |-+...|......+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788999999999887 7788888888888888777555
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=0.00024 Score=55.86 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI----- 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 405 (475)
+......+.+.|++++|++.|++.++. .|+ ...|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455566667777777777766653 222 226777777888888888888888888875
Q ss_pred CCCCCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 406 GFLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 406 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+. +.+...| .....++...|++++|++.|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 112 3467788 88999999999999999999998864
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00011 Score=70.23 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAG---GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----GV-KPD-GLACS 380 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~ 380 (475)
.+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.++- |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776542 1111 2457888888888888888888888876641 21 222 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|...|...|++++|+.++++..+ .|...+....+.+.+..++...+++++|..+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887764 24333233455666777777888889998888888763
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.4e-05 Score=54.64 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hh
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ------GP 449 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~ 449 (475)
...+..+...+...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|++.+++.++.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 4455666667777777777777777777754 2356677777777778888888888888777665 333 45
Q ss_pred hHHHHHHHHHhcCCHhHHhhcc
Q 011919 450 YVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+..+..++...|+.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5666666777777666655433
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00027 Score=56.49 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLI--------D---------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
.+......+.+.|++++|+..|.+.... . -+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554332 0 0112344555555666666666666666665554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
. +.+...|..+..+|...|++++|...|++...
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455566666666666666666666666655
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00016 Score=69.07 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 011919 244 ICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTIST 311 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ 311 (475)
+...|++++|+.++++..+. |...+....+++.+..+|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655442 1111112344555666666666666666655554321 1 011 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~ 332 (475)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555555554444
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.0008 Score=52.12 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.+++++|.++|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0015 Score=63.93 Aligned_cols=174 Identities=6% Similarity=-0.042 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC----------HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
....++|++.++.+...+ +-+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344566777777777765 4455666665555555555 788888888887755 3467778777777777
Q ss_pred cC--ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc------
Q 011919 177 KG--DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------ 247 (475)
Q Consensus 177 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------ 247 (475)
.| +++++++.++++.+.+ +-+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 78 6688888888887765 557777777777777777 788888888888776533 667776666555542
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 248 --------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
+.++++++.++++.... |-+..+|.-.-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCc
Confidence 45677888887777643 45666777666666666553
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0006 Score=52.85 Aligned_cols=111 Identities=11% Similarity=-0.036 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMK 288 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 288 (475)
++.++|.+.|++..+.| .++.. +...|...+.+++|.+.|++..+.+ +...+..+...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 34556666666666555 22222 4455555555666666666665532 44455555555555 55666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 336 (475)
+|+..|++..+.| +...+..|-..|.. .++.++|...|+...+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666555543 33444445455544 455555555555555544
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=8.6e-05 Score=67.72 Aligned_cols=131 Identities=17% Similarity=0.044 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
...+..+...+.+.|++++|...|++.+... |+.. +|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677778888899999999999987754 3222 4555556666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-LCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.. ..+...+..+..+|...|++++|...|++..+.. | .+...+..+... ....+..+++.++|++|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5542 2244555556666666666666666666655432 1 133444444333 22334555555566555544
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.71 E-value=0.0008 Score=52.84 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKE-------GGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|..+..++.+.|++++|+..+++..+. . +.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666777777777666666653 2 2334455 6666666666666666666666543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=0.00019 Score=65.36 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRE- 385 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~- 385 (475)
.|..+..+|.+.|++++|...++..++.+.. +...|..+..+|...|++++|.+.|++..+. .|+. ..+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 3444555555555555555555555544321 3445555555555556666666555555432 2322 222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011919 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
....+..+.+...|..+...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 12234445555555555543
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00054 Score=48.22 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++.+... +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445555556666677777777777666653 1245666667777777777777777777777665 445555555555
Q ss_pred HHHhc
Q 011919 457 HLKKS 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.0011 Score=49.22 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|.+.|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 2234555556666666666666666666666543 124556666666666666666666666666
Q ss_pred HHcCC-CCChhhHHHHHHHHHhcC
Q 011919 440 LKKRI-WLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 440 ~~~~~-~~~~~~~~~l~~~~~~~g 462 (475)
+.... ..+......+...+.+.|
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhc
Confidence 55431 123334444444444433
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.0011 Score=49.24 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444443322 2234444444444444555555555554444432 12344444444445555555555555544443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00053 Score=53.74 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+.+++++|.+.+++..+.. +-+...|..+-.++...++ +++|+..|++..+.. +.+..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHH
Confidence 4455666666666666542 2245555555555555544 457777777777764 2356777777777
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011919 423 LCRKN-----------HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 423 ~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|...| ++++|++.|+++++.. |+...|...+....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 77653 7888888888888775 555566555554443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00047 Score=50.71 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 22333344444444444444444444444443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0015 Score=45.88 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444444432 12344444444455555555555555554444
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.38 E-value=0.021 Score=58.64 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=97.5
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 209 FCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 209 ~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.... -.......|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCCH
Confidence 344566666655 33111 1122225566666666777766654421111 12223455667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7666664332 2455666666666677777666666665532 444444455555555444333333
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
. ..|+++.|...+... | -+...++.|.+.+++++|..+-+. . .|.
T Consensus 734 ~-------------------~~~~~~~A~~~~~~~---g--------~~~~a~~~~~~~~~~~~A~~lA~~---~--~~~ 778 (814)
T 3mkq_A 734 E-------------------TTGKFNLAFNAYWIA---G--------DIQGAKDLLIKSQRFSEAAFLGST---Y--GLG 778 (814)
T ss_dssp H-------------------HTTCHHHHHHHHHHH---T--------CHHHHHHHHHHTTCHHHHHHHHHH---T--TCC
T ss_pred H-------------------HcCchHHHHHHHHHc---C--------CHHHHHHHHHHcCChHHHHHHHHH---h--CCC
Confidence 2 233333333332211 1 023334445556666666665443 2 344
Q ss_pred h----hhHHHHHHHHHhcCCHhHHhhcc
Q 011919 448 G----PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 ~----~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
. .........+...|+.+.|..+.
T Consensus 779 ~~~i~~~~~~~~~~L~~~~~~~~a~~l~ 806 (814)
T 3mkq_A 779 DNEVNDIVTKWKENLILNGKNTVSERVC 806 (814)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHTTBC
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHhhC
Confidence 4 55566666777777766666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.32 E-value=0.0013 Score=47.55 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHH
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|++.+++.++... .++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 34556666666677777777777777776654 22455677777777777777777777777665421 244445555
Q ss_pred HHHHHHhcC
Q 011919 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+...+.+.+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 555554443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.00068 Score=53.12 Aligned_cols=85 Identities=11% Similarity=-0.044 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM----------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666555543 23555555555555555543 35555555555433 2334455555555554
Q ss_pred cC-----------CHHHHHHHHHHHHHC
Q 011919 212 AG-----------RLEDACGLFKVMKRH 228 (475)
Q Consensus 212 ~~-----------~~~~a~~~~~~m~~~ 228 (475)
.| ++++|++.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 42 455555555555543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.13 E-value=0.0018 Score=46.75 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=32.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+...+..+..++.+.|++++|++.|++..+.+ +.+...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555554433 2234445555555555555555555555444
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.012 Score=60.44 Aligned_cols=128 Identities=14% Similarity=0.072 Sum_probs=74.6
Q ss_pred HHHHHcCCHHHHHH-HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 137 NLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 137 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
......+++++|.+ ++..+. +......++..+.+.|..+.|+++.++- . .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 33445677777766 543322 1222366667777777777777655211 1 112334567777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 7777775432 2567777888888888888888887776643 3344444555666555444444
Q ss_pred HHHH
Q 011919 296 RMEA 299 (475)
Q Consensus 296 ~m~~ 299 (475)
....
T Consensus 732 ~a~~ 735 (814)
T 3mkq_A 732 DAET 735 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.005 Score=57.69 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhhHHHHHH
Q 011919 354 TKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDIHSVLLL 421 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~ 421 (475)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+. |...+.-..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776541 12222 356777788888888888888888876642 4333334567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999988888775
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.004 Score=58.39 Aligned_cols=94 Identities=10% Similarity=-0.083 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011919 348 VVELVRTKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455678888888888887753 12222 356778888888888888888888877642 3332234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999888774
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.72 E-value=0.017 Score=41.08 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+...|++++|.+.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555432 11233 4444444555555555555555555544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.70 E-value=0.0067 Score=56.82 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
.+++.|..+|...|++++|+.++++..+- |...+....+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445555555555555555555444321 1111112233444444555555555555444443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.039 Score=49.74 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555531 4444444444455555555555555555444
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.14 Score=38.18 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.....+..+...|+-|+-.+++..+.. +.+|++...-.+..||.+.|+..+|.+++.+.-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344555556666666666666666433 2255556666666666666666666666666666654
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.58 E-value=0.037 Score=39.05 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 374 PDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654443 688888888888865 3467778888888888888888888888888776
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.012 Score=55.05 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+++.+...|...|++++|+.++++...- |...+....+++.+...|...|++++|+.++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444455555555555555555444321 111111223344444444444444444444443
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.23 Score=39.47 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445566666666665544 2455666666666666666666666665542 33344444455565
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444444333 122333334445666666666543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.36 E-value=0.39 Score=43.29 Aligned_cols=67 Identities=15% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3455555555555555566666666666666553 555555555555666666666666666665543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.25 E-value=0.017 Score=41.10 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 11233 444444444444444444444444443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.24 E-value=0.048 Score=42.17 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
...+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+++++.+.. .|..+...+-.+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666666553 67777777777777777 5668888888887764 12124566667777788888888888
Q ss_pred HHHHHHHHcC
Q 011919 434 KLARFMLKKR 443 (475)
Q Consensus 434 ~~~~~m~~~~ 443 (475)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888776
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.33 Score=38.53 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
...|..|.....+.|+++-|.+.|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44444444444444444444444443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.10 E-value=0.29 Score=36.61 Aligned_cols=139 Identities=9% Similarity=0.111 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
-.|..++..++..+..+. .+..-||.++.-....-+-+...++++.+-+- -|.. ..|+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDis----------~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDLD----------KCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCGG----------GCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCcH----------hhhcHHHH
Confidence 456777777777776664 25666666666666666666666766666542 1211 12223322
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+-.+- .+...+...+..+...|+-|+-.+++.++.. +..|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22222211 1334455566667777777777777777544 33455666677777777777777777777777777
Q ss_pred CCC
Q 011919 371 GVK 373 (475)
Q Consensus 371 ~~~ 373 (475)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.03 E-value=0.14 Score=36.07 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444432 11334444444444444444444444444444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.58 E-value=0.19 Score=36.18 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++..+..++.+.|++++|..+++++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555543
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.49 E-value=3.7e-05 Score=70.64 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=108.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
.+..|..|..+..+.+++.+|++-| ++. -|+..|..++.+..+.|.+++-.+++...++.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456666677766666666665443 221 355667777777777777777777776555442 23333346777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------------------CCCCC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------GDCSP 269 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------------~~~~~ 269 (475)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+..-. ..-..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777655433331 2455555566677777777777777665554311 00012
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
++.||..+-.+|...+.+.-|.-.--.+.- .|+ -...++..|...|.+++.+.+++.-.... ......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 344555555555555544433322222211 111 12234444555555655555555544221 123445555555
Q ss_pred HHHhc
Q 011919 350 ELVRT 354 (475)
Q Consensus 350 ~~~~~ 354 (475)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 55554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.13 Score=39.81 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
.+.+-|.+..+.|. ++..+...+.-++++.+ +++++..++++..+.+ .| +...+..|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45555555556666665 4556777777666654 12 234444555666777777777777
Q ss_pred HHHHHHCCCCCC
Q 011919 364 FSKMLASGVKPD 375 (475)
Q Consensus 364 ~~~m~~~~~~p~ 375 (475)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 7777654 453
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.15 E-value=0.25 Score=35.49 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..++..+..+|.+.|+++.|...++++.+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444555555555555555554444
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.02 E-value=1.6 Score=37.83 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 011919 287 MKEALGILDRMEALGCAPN---RVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRL 357 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 357 (475)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666654 344 44667777777773 78888888888877755432355566666767664 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHH
Q 011919 358 KEAEKLFSKMLASGVK--PDGL 377 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~--p~~~ 377 (475)
+++.+.+++.+..... |+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHcCCCCCCCChh
Confidence 8888888887776555 5533
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.71 E-value=0.5 Score=36.13 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 011919 340 SGGCYSSLVVELVRTKRL------KEAEKLFSKMLASGVKPDG----LACSVMIR---ELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~----~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|-.|.- .+...+++++|+++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344555555555555666 6666677666543 33332 11111111 1123478999999999988763
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
+. =...|-.....-.+.|+.+.|.+++...+..+ +.+...+...++-+.
T Consensus 91 -Kk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 -KK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLN 139 (161)
T ss_dssp -TT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhh
Confidence 21 25667777777778999999999999999887 555566666666543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.55 E-value=0.39 Score=35.63 Aligned_cols=89 Identities=21% Similarity=0.131 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE---GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+.+. |.......-.|..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhH
Confidence 33445556666665555443 666666666777777776555 7777777777541 112445556677788888888
Q ss_pred HHHHHHHHHHHHcC
Q 011919 430 VEAAKLARFMLKKR 443 (475)
Q Consensus 430 ~~A~~~~~~m~~~~ 443 (475)
++|.+.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888876
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.51 E-value=0.59 Score=40.44 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-CC
Q 011919 358 KEAEKLFSKMLASGVKPD---GLACSVMIRELCL-----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-NH 428 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 428 (475)
..|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++..+.+. .-+..++..+.+.+++. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCC
Confidence 4455555555543 344 3445555555555 3666666666666666532 11245555566666653 66
Q ss_pred HHHHHHHHHHHHHcCCC
Q 011919 429 SVEAAKLARFMLKKRIW 445 (475)
Q Consensus 429 ~~~A~~~~~~m~~~~~~ 445 (475)
.+++.+.+++.+.....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 66666666666665544
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.20 E-value=0.97 Score=34.57 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=47.9
Q ss_pred CHhhHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 011919 163 DTIIYNNVIRLFCEKGDM------IAADELMKGMGLIDLYPDII-TYVSMIKGF------CNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g 229 (475)
|..+|-..+...-+.|++ ++..++|++... .++|+.. .|...|..+ ...+|.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 555555555544 2234321 111111111 12355666666666665432
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-.- ...|......=.+.|++..|.+++.....
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 222 45555555555566666666666666655
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=3.8 Score=38.36 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHhcc-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH----HhcC
Q 011919 178 GDMIAADELMKGMGL-----IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI----CRLG 248 (475)
Q Consensus 178 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~g 248 (475)
|+++.|++.+-.+.+ .+..........++..|...|+++...+.+..+.+..-.. ......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 677777777655533 2233445567778888888888888777776655432221 22223333322 2222
Q ss_pred ChHHHH--HHHHHHHhc-CCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHH
Q 011919 249 SMERAL--ELLGEMEKE-GGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPN---RVTISTLIKGFC 317 (475)
Q Consensus 249 ~~~~a~--~~~~~~~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~ 317 (475)
..+... .+.+..... ...+-. .......|...+...|++.+|.+++..+... |.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 111111110 000001 1122345666677777777777777776532 21111 234555566677
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVA----GGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
..+++.+|..++..+.. ....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777766532 122221 23455566666667777777766666543
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=4 Score=38.23 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----H
Q 011919 212 AGRLEDACGLFKVMKRH-----GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----C 282 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~ 282 (475)
.|++++|++.+..+.+. ....+......++..|...|+++...+.+..+... .+..+... ..+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai--~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSI--QYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHH--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHH--HHHHHHHHHHHh
Confidence 36788888877666542 23446777888999999999999988888777654 23333322 2333322 2
Q ss_pred hcCCHHHHH--HHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHH
Q 011919 283 GKGMMKEAL--GILDRMEA--LG-CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GSVSS---GGCYSSLVV 349 (475)
Q Consensus 283 ~~g~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 349 (475)
.....+... .+.+.... .| +-. .......|...+...|++.+|.+++..+... +.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 11111110 01 111 1112345677778888888888888887542 22111 245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH----HH
Q 011919 350 ELVRTKRLKEAEKLFSKMLA----SGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS----VL 419 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l 419 (475)
.|...+++..|..++.+... ....|+ ...+...+..+...+++.+|.+.|.++.+..... .+...+. .+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHH
Confidence 78888888888888777642 222222 1334555566667778887777777776532110 1222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
+.+..-.+....-..++........-++...+..++.+|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 222223333333334444444443334455666666666543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.83 E-value=2.2 Score=39.17 Aligned_cols=68 Identities=9% Similarity=-0.065 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
++.++...|+.+++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|++.+-.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3444445555555555555554433 22444555555555555555555555544432 25555554433
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.78 E-value=0.00038 Score=64.14 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
++..|..++....+.+.++..+..+...++..-.|.+. +.|+-+|++.++..+-.++ .. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHH
Confidence 45567888999999999999999988877764444444 4688899999886553222 22 367767778888
Q ss_pred HHHhcCChhHHHHHHHHhccCC--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 173 LFCEKGDMIAADELMKGMGLID--------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
-|...|.++.|.-+|..+.... -..+..||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 8888888888877776654321 0235667777777777777776654433333321
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
......++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++.
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE---rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1122345666777788888887777765421 35666777777666664 44544444433
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.54 Score=46.96 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=77.2
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCC-HHHHHHHHHHHHHC------CCC-cCH----
Q 011919 170 VIRLFCEKGD-MIAADELMKGMGLIDLYPDIITY--VSMIKGFCNAGR-LEDACGLFKVMKRH------GCA-ANL---- 234 (475)
Q Consensus 170 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~-~~~---- 234 (475)
++..+...++ .+.|..+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ..+ .+.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3333444555 577999999987754 333332 233333333332 22455555444321 111 111
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 235 ------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.....-.+.+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222455677899999999999998852 4568899999999999999999999988873
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.15 E-value=0.72 Score=34.23 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE---AYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
.+.+-+......|. ++..+-..+.-++.+...... ++.+++++.+.+.+ -.......|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444443333332 455554455555555554443 66666666554311 12233334455566666666666666
Q ss_pred HHHHHC
Q 011919 365 SKMLAS 370 (475)
Q Consensus 365 ~~m~~~ 370 (475)
+.+++.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666644
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.53 E-value=4 Score=43.55 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------- 230 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------------- 230 (475)
..++..+.+.+..+.+.++..-.. .+...--.+..++...|++++|...|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 345556666677766666554332 2333334455666777777777777765321 11
Q ss_pred ------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 231 ------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN--VVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302 (475)
Q Consensus 231 ------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 302 (475)
..-..-|..++..+.+.|.++.+.++-....+....-.++ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1112346778888899999999998887776542211222 22578888999999999999999988876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 011919 303 APNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~~~~ 324 (475)
+ ...+..|+...|..|..+.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHhCCChhh
Confidence 3 3456667776776665443
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.05 E-value=12 Score=38.37 Aligned_cols=154 Identities=11% Similarity=0.104 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcC
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS---TLIKGFCVEG 320 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g 320 (475)
+.-.|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|. .-|. .+.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCC
Confidence 334455555555555544421 1111112222223335566666666666555431 111 1121 2223455556
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-LEGFCLY 399 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 399 (475)
+.....+++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|..+.-..+.-+....|.. .++...+
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6655555666655432 1122222233333334455444555555444432 33333333333333334332 4455555
Q ss_pred HHHHH
Q 011919 400 EDIEK 404 (475)
Q Consensus 400 ~~~~~ 404 (475)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 55543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.87 E-value=13 Score=38.22 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=141.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGC-------AANLVAYSALLDG 243 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~ 243 (475)
+.+..|+.++++.+++.....+-..+..+ =..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888888888877664210122222 22333445566666678887776665321 0112222333333
Q ss_pred HHhcCC-hHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 011919 244 ICRLGS-MERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCV 318 (475)
Q Consensus 244 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 318 (475)
++-.|. -+++.+.+..+.... .+...... .+...++-.|+.+....++..+.+.. +......+.- ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 346666666666532 11111122 23334556678787788887776542 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 319 EGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.|+.+.+..+.+.+.... .|.... -.++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789898988888887642 232221 1234456778889887777998887652 223333333333555677777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS-VEAAKLARFMLK 441 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 441 (475)
++++.+.+.+ ++.+..-..+..+....|+. .+|+.++..+..
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666654 22444444444455555544 567777777753
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.53 E-value=3.4 Score=44.08 Aligned_cols=192 Identities=10% Similarity=0.017 Sum_probs=115.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC---------------- 302 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------- 302 (475)
.++..+.+.+..+.+.++..-. +.+....-.+..++...|++++|.+.|++... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 3445566666666666544332 23444445566788889999999999976421 11
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 303 -------APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS----GGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 303 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
..-..-|..++..+.+.+.++.+.++-...++....-+ ...|..+..++...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 01123467788888888999988888777665322212 2368888999999999999999888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHH
Q 011919 372 VKPDGLACSVMIRELCLGGQVLE------------GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARF 438 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~ 438 (475)
.+ ...+..|+..+|..|..+. ..+++..-.+....+......|..|=.-+...|++..|-.+ |+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 33 4566677777776655443 33343322221100111123344444445567777776655 444
Q ss_pred HH
Q 011919 439 ML 440 (475)
Q Consensus 439 m~ 440 (475)
+.
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.53 E-value=11 Score=36.86 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.-+..+.+.+++...+..+.. . +.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4455667777887777765543 1 3455555556777778888777777777665555 45566677777777766
Q ss_pred CCHHH--HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH--------------
Q 011919 213 GRLED--ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS-------------- 276 (475)
Q Consensus 213 ~~~~~--a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------- 276 (475)
|.+.. ...=++.+...| +...-..++..+ . .+.....+.+..+... +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN----PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC----GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC----hHhHHHHHhccCCChhhHHHHHH
Confidence 65432 333333344433 222222222221 1 1111111222233331 122221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK----GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.-+.+ .+.+.|...+....... ..+......+-. .....+...++...+........ +.....-.+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHH
Confidence 1111222 35667777776665432 122222222222 22223324455555555443322 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.|+++.|.+.|..|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56777777777776654211 1223233344556667777777777777764
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.46 E-value=1.5 Score=30.74 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
.+.+.. +.-.+.+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++..- .....+|..+++-
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 344444 555677778888888889999999999999999999999999999887532 2334567777653
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.01 E-value=1.3 Score=40.63 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-----LGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 308 (475)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456677778888888888887777643 55777888888888888888888888877643 477777654
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.40 E-value=3.7 Score=41.03 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=29.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|...|+++.|+++-++....- |.+..+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566666666666665542 235566666666666666666666555443
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.35 E-value=3.2 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
.-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-.+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335555666666666667777777777777777777777777766554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.11 E-value=5.6 Score=29.66 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 371 GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+ |......+-.|..++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345676666666666666654 456888888888765 22245667777888889999999999999888776
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.36 E-value=11 Score=34.33 Aligned_cols=168 Identities=8% Similarity=-0.059 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
......|...|.+.|+.++..+++.....- .+..+ .......+++.+... +..+.-.++..+..+..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677889999999999999988877542 11112 223355677777664 344445555555443211 112233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 011919 310 ------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-----GGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDG 376 (475)
Q Consensus 310 ------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 376 (475)
..++..|...|++.+|.+++..+.+.=-..| ...|..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2577888888999999888888765311111 245666677788888888888888877542 233444
Q ss_pred HHHHHH--HH--HHH-hcCCHHHHHHHHHHHH
Q 011919 377 LACSVM--IR--ELC-LGGQVLEGFCLYEDIE 403 (475)
Q Consensus 377 ~~~~~l--i~--~~~-~~g~~~~a~~~~~~~~ 403 (475)
..-..+ .. .+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 332221 11 234 6788888888776653
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.05 E-value=3.4 Score=30.80 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
.+.+.. +.-+..+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++..- .+....|..+++
T Consensus 61 ~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 61 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344434 455667778888888889999999999999999999999999999887542 244556777765
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.23 E-value=5.8 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+..+-++.+...++.|+..+....+++|-+.+|+..|.++|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455555666666667777777777777777777777777776665431 22333454444
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.40 E-value=9.6 Score=28.41 Aligned_cols=72 Identities=6% Similarity=0.084 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 302 CAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
-.|+..+-..+.-++.+..+ ..+++.+++++.+.+..-....+--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 34555555555555555544 3456777777766553223445555666777778888887777777754 554
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.99 E-value=20 Score=31.73 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF----SKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~li~ 384 (475)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++. +-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444556666666666654321 11233444444433333 33334455566655555555
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 385 ELCLGGQVL-EGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 385 ~~~~~g~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
.+.....-+ .-..+.+++.+ .|..+.-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 544433211 11222222222 22222235566666667777777777666554
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.85 E-value=20 Score=31.49 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL----FSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~li 383 (475)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+-+.+.++.++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455566677778888887776432 2234455665555443 44444567777777777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 384 RELCLGGQVL-EGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 384 ~~~~~~g~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
..+.....-+ .-.++.+++. +.|..+.-+...+..+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655432111 1233344443 233223336778888888888888888887755
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.71 E-value=9.1 Score=35.57 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 011919 428 HSVEAAKLARFMLKKR 443 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~ 443 (475)
..+++.+.+-+|+..|
T Consensus 360 s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 360 SVAFLDNDLGKFIPNK 375 (429)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4566677777777554
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.27 E-value=9.6 Score=35.41 Aligned_cols=98 Identities=9% Similarity=-0.108 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLACS-- 380 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-- 380 (475)
+...+...|.+.|+++.|.+.+.++...-. ..-...+-.+++.+...+++..+...+.+... .+-.|+...--
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566777888888888888888888876422 22345677777888888888888888877653 22223222110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234567787777777776654
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.09 E-value=28 Score=31.20 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMG 191 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~ 191 (475)
..+|.-|...++.++|...++++..... .......++......++ -+.+-.++..+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 3456666677778888887777653221 22233334443333332 234455555555
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.31 E-value=7.6 Score=33.15 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 011919 169 NVIRLFCEKGDMIAADELMKG 189 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~ 189 (475)
..+...++.|+.+.+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 345556677777666555543
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.79 E-value=12 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 334444554444444333 344444433322 2344444444444444333
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.70 E-value=7.1 Score=30.43 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=30.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCcC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAAN-------LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555566666655555433211 1122 12444555666666777777766666543
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.64 E-value=16 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 373 KPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+..+--.+..++.+..+ ..+++.+++++.+.+. .......-.|..++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5666666666666666654 4567788888877542 2245556667778888888888888888888876
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.43 E-value=14 Score=31.43 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 188 (475)
..+...++.|+.+....+++.-.......+..-+ +.+...+..|+.+-+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHH
Confidence 4566677788887777776654332222222222 34455566777655544443
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.76 E-value=12 Score=26.24 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=22.7
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555444332 345444443322 24444444444444444443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.43 E-value=7.5 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
|...-..+++.+|-.|++++|.+-++..
T Consensus 30 da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 30 DASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333333444444444444444433333
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.08 E-value=22 Score=28.67 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 357 LKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
..++.++|..|...|+.-. +..|......+-..|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666666555433 3445555555666677777777776666665544
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.25 E-value=20 Score=27.13 Aligned_cols=71 Identities=6% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 303 APNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
.|+..+-..+.-++.++.. ..+++.+++++.+.+..-.......|.-++.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4555555555555555543 3456666666666443223344445566677777777777777777754 454
No 269
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.35 E-value=14 Score=28.80 Aligned_cols=115 Identities=7% Similarity=-0.023 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHH
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDG-LAC 379 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-~~~ 379 (475)
..-+..+...|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++.++.. .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334555666677777776666644321 11221 234555666667777777777777654321 11111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
..+- ....... .... ..+.+.--.+..+|.+.|++++|+.+++..
T Consensus 104 ~~~~----~~ss~p~---------s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc----ccCCCcc---------cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0000 0000000 0011 124455556888999999999999987654
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.58 E-value=48 Score=29.31 Aligned_cols=168 Identities=12% Similarity=0.079 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG----ILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ 311 (475)
+|.++..=|.+.+++++|.+++..-.. .+.+.|+..-|.+ +++...+.++++|......
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445566668889999999988754332 2344455544443 3455566778888888777
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHh----CC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011919 312 LIKGFCVEGNLD-EAYQLIDKVVA----GG--SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 312 li~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 384 (475)
++..+.....-+ .=.++.+.+++ .| ..-+......+...|.+.+++.+|...|- . |-.+....|..++-
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHH
Confidence 877777655321 12333343332 22 23366777888889999999999888773 2 43444466666655
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.+...+...++ + ....-.+-.|.-.++...|..+++...+
T Consensus 176 ew~~~~~~~e~----------------d-lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHTA----------------P-LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGGH----------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccH----------------H-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444331111 1 1223344456677888888887766654
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.15 E-value=28 Score=28.65 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 011919 316 FCVEGNLDEAYQLIDK 331 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~ 331 (475)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555544444443
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.71 E-value=60 Score=29.57 Aligned_cols=293 Identities=12% Similarity=0.048 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccC-CCCC---CHhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCCChhhH---
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEF-DLRP---DTIIYNNVIRLFCEKG-DMIAADELMKGMGLIDLYPDIITY--- 202 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~--- 202 (475)
....+...|.+.|+.++..+++...... +.-+ .......+++.+.... ..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344556666666666666666655431 0001 2233455555555432 2222233333322211 0111223
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCCcHH
Q 011919 203 ---VSMIKGFCNAGRLEDACGLFKVMKRH--GCA---ANLVAYSALLDGICRLGSMERALELLGEMEKEGGD--CSPNVV 272 (475)
Q Consensus 203 ---~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 272 (475)
.-++..|...|++.+|.+++..+.+. ... .-..+|..-+..|...+++.++...+......... ++|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25778888899999998888887763 111 11344566677888899999999888877653211 223222
Q ss_pred HHHH--HHHHHH-hcCCHHHHHHHHHHHHHc-C-C-CC---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChh
Q 011919 273 TYTS--VIQIFC-GKGMMKEALGILDRMEAL-G-C-AP---NRVTISTLIKGFCVEGNLDEAYQLID-KVVAGGSVSSGG 342 (475)
Q Consensus 273 ~~~~--li~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~ 342 (475)
..-- -...+. ..+++..|...|-+..+. . . .| +...|..+..... ++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHH
Confidence 2111 122345 678899988887665321 1 0 11 1223333322222 22222222221 111111345555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCchhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~ 418 (475)
.+..++.+| ..+++.+..+++..... .+..|...... ...+++.+.+.+ +. +-....+..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~-pYsrIsl~~ 321 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIE-PYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHT-TCSEEEHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHH-------------HHHHHHHHHHHHHHHHhH-hhceeeHHH
Confidence 566666665 56778777777666532 23445432111 112222222211 11 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
+...+.- ..+++...+-+|+..|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 7666543 67889999999987753
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.68 E-value=59 Score=26.52 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH---hhHHHHHHHHHhc
Q 011919 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT---IIYNNVIRLFCEK 177 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 177 (475)
.....|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++. .-. ..+...+..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~-t~l~~A~~~ 89 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQ-TAAHLACEH 89 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCC-CHHHHHHHc
Confidence 34555777776667766655554443221 1123444455666544444443 2322221 111 233334456
Q ss_pred CChhHHHHHHHHh
Q 011919 178 GDMIAADELMKGM 190 (475)
Q Consensus 178 g~~~~a~~~~~~~ 190 (475)
|+.+-+..+++..
T Consensus 90 ~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 90 RSPTCLRALLDSA 102 (241)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6665555555543
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.59 E-value=48 Score=25.39 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
+++..+|..|..+|+-. .-...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGT-LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34677788887776542 345667777777777888888888888887776555433
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.50 E-value=35 Score=23.87 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=53.1
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
..++|..+-+-+...+ + .....+|+ .+...|++++|..+.+... .||...|-.|.. .+.|..+++..-
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3455555555555543 2 22223343 5677899999988887776 488888876654 477888888877
Q ss_pred HHHhccCCCCCChhhH
Q 011919 187 MKGMGLIDLYPDIITY 202 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (475)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.41 E-value=77 Score=27.73 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG----ILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ 311 (475)
.|.++..=|.+.+++++|.+++..-.. .+.+.|+..-|.+ +++...+.+.+++......
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL-----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445556667788888888887654432 2344555544444 3455566678888877777
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----hCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011919 312 LIKGFCVEGNLD-EAYQLIDKVV----AGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 312 li~~~~~~g~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 384 (475)
++..+.....-+ .=.++++.++ +.|. .-+......+...|.+.|++.+|...|-. |-.-+...+..++-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 777766543211 1233334433 2221 22667788888899999999888876641 21113455555554
Q ss_pred HHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 385 ELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 385 ~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
-+... |...++ +.. ....+-.|.-.|+...|..+++...+
T Consensus 174 ~w~~~~~~~~~~e~----------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 174 DWLCQVDDIEDSTV----------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTCCCHHHH----------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchH----------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44333 332221 111 12233345567888888888877653
No 277
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.37 E-value=19 Score=28.71 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhcccc
Q 011919 432 AAKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 432 A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~ 473 (475)
-.++++.+++.|..++..... ..+....+.|+.+.+.-+++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 355666667776655443221 234445566777777666654
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.85 E-value=15 Score=30.31 Aligned_cols=19 Identities=0% Similarity=0.079 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 011919 135 IFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~ 153 (475)
.+...++.|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444445555544444444
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.73 E-value=58 Score=26.09 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=33.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
++..+-...+.++.+.++.+.. ..+.++.. .++..+-...+.++.+.|+.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4444444555555555543322 22222322 244444444444444444422 2233333332 23444444444
Q ss_pred HHHHhcCC
Q 011919 242 DGICRLGS 249 (475)
Q Consensus 242 ~~~~~~g~ 249 (475)
.++.+.+.
T Consensus 165 ~aL~~~~~ 172 (211)
T 3ltm_A 165 DALGEIGG 172 (211)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 44444443
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.65 E-value=37 Score=23.81 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
..++|..+-+-+...+. .....+|+ .+...|++++|..+.+... .||...|-.|.. .+.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 34555555555555432 22223343 5677889999998888776 488888876654 367777788777
Q ss_pred HHHhccCCCCCChhhH
Q 011919 187 MKGMGLIDLYPDIITY 202 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (475)
+.++...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.52 E-value=87 Score=28.04 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...+|.-|...++.++|...++++..... .......+|......++ .+.+-.++..+.. ++-+.......+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 46678888999999999999999863221 22333344443333333 3445566666653 44444444444333
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=61.34 E-value=58 Score=29.83 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=9.3
Q ss_pred HHHHhcCChhHHHHHHHH
Q 011919 172 RLFCEKGDMIAADELMKG 189 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~ 189 (475)
...+..|+.+.+..+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455666555555543
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.80 E-value=54 Score=25.09 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHhcccCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 011919 148 AMWVLRKMPEFDLRP-DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197 (475)
Q Consensus 148 A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 197 (475)
+.++|..|...|+-. -...|......+-..|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666665554432 23345555555556666666666666555544444
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.47 E-value=71 Score=29.24 Aligned_cols=329 Identities=11% Similarity=0.126 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011919 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
.+...+..|+.+.+..++ +.|..|+... ..+.+...+..|+.+-+..+++.-...+. .+.... +.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCC-CHHHHHHHC
Confidence 445556677766555554 4465554321 22355666677877766666664332211 122222 344455677
Q ss_pred CChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCChH
Q 011919 178 GDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDGICRLGSME 251 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~ 251 (475)
|+.+-+.-+++. |..++ ....+ .+...+..|+.+.+..+++ .+..++ ..-+ +.+...+..|+.+
T Consensus 91 g~~~~v~~Ll~~----ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~ 160 (437)
T 1n11_A 91 GHTNMVKLLLEN----NANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVR 160 (437)
T ss_dssp TCHHHHHHHHHH----TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHH
T ss_pred CCHHHHHHHHhC----CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHH
Confidence 887655555543 33332 22222 3344456677766655554 332221 1111 2344456677766
Q ss_pred HHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 011919 252 RALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV---TISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~ 327 (475)
-+..++ +.+..+. .+....+ .+...+..|+.+ +++.+.+.|..++.. .++. +...+..|+.+-+..
T Consensus 161 ~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 161 VAELLL----ERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARS 230 (437)
T ss_dssp HHHHHH----HTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHH
T ss_pred HHHHHH----hCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHH
Confidence 554444 3222111 1111122 234445666654 445555566555432 2233 344566777655444
Q ss_pred HHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 328 LIDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 328 ~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
+ .+.|..++. .-.+. +...+..|..+-+.. +.+.|..++. ...+.|.. .+..|..+- .+.
T Consensus 231 L----l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~ 296 (437)
T 1n11_A 231 L----LQYGGSANAESVQGVTP-LHLAAQEGHAEMVAL----LLSKQANGNLGNKSGLTPLHL-VAQEGHVPV----ADV 296 (437)
T ss_dssp H----HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHH----HHTTTCCTTCCCTTCCCHHHH-HHHHTCHHH----HHH
T ss_pred H----HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHH----HHhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHH
Confidence 4 444443322 11222 333456677654443 3444443322 22233333 345666654 444
Q ss_pred HHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHhHHhhcccc
Q 011919 402 IEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--DKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 402 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
+.+.|..... +..-.+.| ...+..|+.+ +++.+++.|..++.... ...+....+.|+.+.+.-+++.
T Consensus 297 Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 297 LIKHGVMVDATTRMGYTPL-HVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHHHTCCTTCCCSSCCCHH-HHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCCccCCCCCCCCCCHH-HHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence 4555543211 22223333 3345667765 34445556655443321 1233444567888888777764
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.49 E-value=42 Score=27.35 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=22.1
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 188 (475)
..++.|+++....+++.-..... ++..- ...+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQ-PDKEN-VTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-CCTTS-CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCCCcCC-CCCCC-CCHHHHHHHhCCHHHHHHHHH
Confidence 34456666555555553322111 11111 123445566677655555444
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.78 E-value=80 Score=25.48 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011919 285 GMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666554333 3345555566666666777777666666666666
No 287
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=55.72 E-value=1.9e+02 Score=29.83 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=48.1
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 239 ALLDGICRLGS---MERALELLGEMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 239 ~ll~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
.++...|+.|+ .+.|.+.|+.....+ ..++||.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34555666665 445666666665432 22445432 223333344566555555555555532 223334566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
.+++-..+.+...++++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHhCCCCCHHHHHHHHHHHhCC
Confidence 6666666666666666665543
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.68 E-value=70 Score=24.82 Aligned_cols=54 Identities=6% Similarity=-0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
...+|..|..+|+-. .-...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~-~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV-SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 555666666665432 234555556666666666666666666666665444433
No 289
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=55.58 E-value=1.3e+02 Score=27.89 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=35.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcC
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----MERALELLGEMEKEG 264 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~ 264 (475)
+..+.+.|+.++.+|.+.|..|....-..+..++-.-|. ..-|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457888899999999988877665555555555555553 445556666666633
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.53 E-value=54 Score=27.29 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFK 223 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~ 223 (475)
....+..+.+.|+-++|.++|-
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHH
Confidence 3334444444455555544443
No 291
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.38 E-value=1.1e+02 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
..+.|+.+++++....-.+.. +-|...=..+++.+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666665555442 334444555666666666666666666665554
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.76 E-value=8.8 Score=32.42 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHhcCCHhHHhhcccc
Q 011919 455 VEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~~ 473 (475)
+....+.|+.+.++.+++.
T Consensus 229 L~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344566777777666543
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.62 E-value=81 Score=26.23 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
++.......+..+.+.|+.++|.++|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555566667777777777777765543
No 294
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=51.96 E-value=94 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556677777777777777776664
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.41 E-value=1.3e+02 Score=26.26 Aligned_cols=202 Identities=12% Similarity=0.066 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
....++.-|...|+.++|...++++.... -.......++......++ -+.+-.++..+.. ++-+.......+.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~----~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE----MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG----GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 35678899999999999999998874311 122223334444444443 3445566777764 4444444433333
Q ss_pred HHHHhcCC----HHHHHHH----HHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHC-----------C-
Q 011919 314 KGFCVEGN----LDEAYQL----IDKVVAGGSVSSGGCYSSLVVELVRTKR--LKEAEKLFSKMLAS-----------G- 371 (475)
Q Consensus 314 ~~~~~~g~----~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~-----------~- 371 (475)
..+....+ ...|..+ +..++..++.|........- +... -.++....+.+... |
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~----~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~ 155 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TVDCVQARAALDKATVLLSMSKGGKRKDSVWGS 155 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTT----TCCCHHHHHHHHHHHHHHHTCC----CCCSSCC
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHh----cccchHHHHHHHHHHHHhcccccHhHHhhhcCC
Confidence 33333322 2233333 34444455554332211111 0111 01122222222211 1
Q ss_pred --CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 011919 372 --VKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH--SVEAAKLARFMLKKR 443 (475)
Q Consensus 372 --~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~ 443 (475)
-..+. .....++.-|...|+.++|.+.++++..-.+. ...++..+..++-+.++ .+.+.+++..+.+.|
T Consensus 156 ~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~---~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 156 GGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH---HELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp CSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH---HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch---HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 01111 23567788888899999999999888632111 22334444444444322 345667777777766
Q ss_pred CCCChh
Q 011919 444 IWLQGP 449 (475)
Q Consensus 444 ~~~~~~ 449 (475)
+-+...
T Consensus 233 ~ls~~q 238 (307)
T 2zu6_B 233 TITVDQ 238 (307)
T ss_dssp SSCHHH
T ss_pred CCCHHH
Confidence 544333
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=50.21 E-value=80 Score=24.86 Aligned_cols=28 Identities=4% Similarity=-0.283 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 198 (475)
+...+..|+.+.-.++.+-+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3334445554444444555555554443
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.84 E-value=69 Score=24.34 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|.+++ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 16 ~~l~~~g~r~T---~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNS---KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CH---HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCC---HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34555665542 2234455555555666677888888877776677777777777777777544
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.65 E-value=89 Score=24.24 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=21.5
Q ss_pred HHHHHHhcccCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 011919 148 AMWVLRKMPEFDLRP-DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197 (475)
Q Consensus 148 A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 197 (475)
+.++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344444444443322 22234444444444455555555554444444333
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.45 E-value=51 Score=28.18 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=8.9
Q ss_pred HHHHHHcCCHHHHHHHHHh
Q 011919 136 FNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~ 154 (475)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555544444443
No 300
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.30 E-value=88 Score=24.05 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+.+..++..+.+.|.--|...-...+....+.| .....+-.++..+|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 444455555555554433333334444443322 123344555555554
No 301
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.12 E-value=1.3e+02 Score=26.10 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=11.1
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 011919 135 IFNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~ 154 (475)
.+...++.|+++-+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 44444556666655555544
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.72 E-value=1.4e+02 Score=26.08 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.++.+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445677777778888888877777532111 12334444445444332 355667777777666665444333333333
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.31 E-value=98 Score=24.33 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHh-cC
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG---CYSSLVVELVR-TK 355 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~g 355 (475)
.++.|+.+....++.. +..... ..=.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3566777765555432 211111 111233444556677666677777777777666432 22333332222 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCCC-chhhHHHHHHHHHhcCCH
Q 011919 356 RLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQV-LEGFCLYEDIEK-IGFLSSV-DSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~-~~~~~~~li~~~~~~g~~ 429 (475)
+.....++.+.+++.|..++... .+..+...+..+.. ..-..+++.+.+ .|..+.. |..-.+.+ ....+.|+.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~ 167 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKP 167 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCH
Confidence 44555677777777777665432 20222222223322 344556677777 6653311 11112223 233455655
Q ss_pred HHHHHHHHHHHHcCC
Q 011919 430 VEAAKLARFMLKKRI 444 (475)
Q Consensus 430 ~~A~~~~~~m~~~~~ 444 (475)
+-..-+.+...+.++
T Consensus 168 ~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 168 IALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 444333344434443
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.99 E-value=75 Score=27.09 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=34.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHH
Q 011919 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 183 (475)
....|+.+.+..++ +.|..++...-.+.+...+..|+.+-+..+++.-..... +|..-++ .+...+..|+.+-+
T Consensus 38 A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t-~L~~A~~~g~~~~v 111 (285)
T 3kea_A 38 AIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNT-ALYYAVDSGNMQTV 111 (285)
T ss_dssp HHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCC-HHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCc-HHHHHHHcCCHHHH
Confidence 34456655444444 334444332222345555566666555555443222111 1222222 23334556666555
Q ss_pred HHHHHH
Q 011919 184 DELMKG 189 (475)
Q Consensus 184 ~~~~~~ 189 (475)
..+++.
T Consensus 112 ~~Ll~~ 117 (285)
T 3kea_A 112 KLFVKK 117 (285)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 444443
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.12 E-value=1e+02 Score=24.26 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=56.2
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.++.+....+. .+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHH
Confidence 444444444555555543 23333333332 245555556666666666543333333 3332 345555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.++.+ +...+..+... ++..+-...+.++.+.|. +++...+..+..
T Consensus 130 aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555555532 33333333332 355555555555555554 334444444443
No 306
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=46.60 E-value=1.2e+02 Score=24.86 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCCCCCC
Q 011919 324 EAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~ 340 (475)
.+..+++.+.+.|...|
T Consensus 94 ~i~~vl~~L~~~g~ldD 110 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDD 110 (221)
T ss_dssp HHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHcCCCCH
Confidence 33444444444444433
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.10 E-value=1.4e+02 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
..++.-|...|+.++|...++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3456666777778888777777753
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.04 E-value=67 Score=25.26 Aligned_cols=12 Identities=8% Similarity=0.385 Sum_probs=5.0
Q ss_pred HHHHHHHhCCCC
Q 011919 327 QLIDKVVAGGSV 338 (475)
Q Consensus 327 ~~~~~~~~~~~~ 338 (475)
++++.+.+.|..
T Consensus 159 ~~v~~Ll~~ga~ 170 (201)
T 3hra_A 159 DIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 344444444433
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.90 E-value=83 Score=23.17 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~ 409 (475)
....++.-|...|+.++|.+.++++..-. .-.......+..++-+.++ .+....++..+.+.|+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888999999999999999984111 1112333444445555432 356777888887776653
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.46 E-value=61 Score=24.42 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=38.3
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|.+.++ .-..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 12 ~l~~~g~r~T~---qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITP---QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 45556655432 233444555555555667777777777766667777777777777777543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=43.95 E-value=2e+02 Score=26.73 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=45.2
Q ss_pred CCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
|++--...|..-.+.+...|++++|..+-..-+. |+-.+..|.+.+-.+=...|+..-.+.+|..+.+.| ..+..---
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 4333344444445555556666666666555543 344455555544443334455555555555555544 33333223
Q ss_pred HHHHHHHhcCCHHHH
Q 011919 204 SMIKGFCNAGRLEDA 218 (475)
Q Consensus 204 ~li~~~~~~~~~~~a 218 (475)
.+++.-...|+.+-.
T Consensus 434 El~r~vL~q~r~~ll 448 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLL 448 (494)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHhHHHHhccHHHHH
Confidence 344444444554433
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.75 E-value=63 Score=24.02 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|.+.++ .-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~l~~~g~r~T~---qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTL---PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34556655422 2334455555554 56667777777777776677777777777777777544
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.61 E-value=83 Score=25.43 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHHH
Q 011919 175 CEKGDMIAADELMK 188 (475)
Q Consensus 175 ~~~g~~~~a~~~~~ 188 (475)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444443
No 314
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.32 E-value=1.3e+02 Score=26.31 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=11.8
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011919 317 CVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|...|+.++.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456777777777766654
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.22 E-value=16 Score=30.71 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=7.8
Q ss_pred HhcCCHHHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKM 367 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m 367 (475)
+..|+.+-+..++++-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 3455555554444443
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.08 E-value=1.3e+02 Score=23.92 Aligned_cols=154 Identities=14% Similarity=0.007 Sum_probs=82.3
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.++.+.. ..+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 4555555556666666653 33333333333 24666666666777777764433 33333332 35666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCc
Confidence 7777776643 3334444443 356666666667777666643 4444444443 2455555556666666655
Q ss_pred HHHHHHHHHHHHH
Q 011919 287 MKEALGILDRMEA 299 (475)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (475)
.++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 344444444443
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.49 E-value=78 Score=23.84 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=24.7
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444332 22334444444444445555555554443344444333344444443
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.67 E-value=1.4e+02 Score=24.53 Aligned_cols=55 Identities=7% Similarity=-0.208 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
+....+|..|..+|+-. .-...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQ-ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45667777777776532 24566677777777777777777777777776655543
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.47 E-value=55 Score=26.92 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC
Q 011919 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163 (475)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 163 (475)
...|+.++.-...-+..... .+...++|..|...|+-. -...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 110 ~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 110 NPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34555666544443433332 345667888888888754 455667777788889999999999999888765654
No 320
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.82 E-value=2.9e+02 Score=26.96 Aligned_cols=90 Identities=4% Similarity=-0.031 Sum_probs=50.2
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC
Q 011919 84 AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 163 (475)
....++.+.....-+..+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..| ...
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~ 135 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQ 135 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCC
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC
Confidence 334555555555556667777777887766654321 23445544556667777787666665555443333 223
Q ss_pred HhhHHHHHHHHHhcCC
Q 011919 164 TIIYNNVIRLFCEKGD 179 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~ 179 (475)
...+..++..+.+.|.
T Consensus 136 p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 136 PNACDKLFSVWRASGK 151 (618)
T ss_dssp CTHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 3445556665555443
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.72 E-value=1.3e+02 Score=22.95 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAP 304 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 304 (475)
..++.-|...|+.++|...++++... .-....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p---~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44566666666666666666666420 00112233333334443222 344555566665555443
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.53 E-value=75 Score=24.14 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|++.++ --..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 7 ~l~~~g~r~T~---qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTL---PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35556655432 2234444454444 55567777777777776677777777777777777544
No 323
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.47 E-value=34 Score=21.21 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCH
Q 011919 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDE 464 (475)
Q Consensus 430 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~ 464 (475)
++|.+.|.+|++..--++.-+|...++.+ .+..++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 45555555555433233334555555555 444443
No 324
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=38.30 E-value=2e+02 Score=24.95 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=25.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHh---HHHHHHHHHHcCCHHHHHHHHHh
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM---MKVIFNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~ 154 (475)
+-...+.|+.+.+..+++ .|..++... -.+-+...++.|+.+-+.-+++.
T Consensus 29 L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 334456677665555554 455554221 11234445566776555444443
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.27 E-value=93 Score=24.01 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCH
Q 011919 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK--RIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
+.+.|.+.++ --..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-.
T Consensus 24 L~~~g~r~T~---qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTK---QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCH---HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554422 2344455555555566677777777666 5556666666666666666644
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.13 E-value=1.4e+02 Score=23.10 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011919 319 EGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVV-E-----LVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 369 (475)
.|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776654444 4455666666 1 2346777777777777654
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.09 E-value=73 Score=24.35 Aligned_cols=64 Identities=13% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCA 231 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 231 (475)
.+.++.-|...|+.++|...++++..-. -....+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3556666777777777777777764210 0112223333344444322 34556666666666544
No 328
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.02 E-value=84 Score=20.60 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=37.7
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|...+ . --..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 7 ~l~~~g~~~t--~-~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVT--L-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCC--H-HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcC--H-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 3455565442 1 2234445554443 45567777777777766677777777777777777543
No 329
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.52 E-value=1e+02 Score=21.40 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhc-----ccCCCCCCHhhHHH
Q 011919 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-----PEFDLRPDTIIYNN 169 (475)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~ 169 (475)
.+.++.+++..-|+.|+..+...++..|...+. + +.++.++. ...|..|+....+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 355666677777888888777777777777664 2 33332221 12355566555444
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.48 E-value=82 Score=23.90 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445444322 33344444444444455556655555444444444444444444444
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.33 E-value=77 Score=23.52 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=25.0
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 333 VAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444332 233344444433 34445555555555544444444433444444443
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.31 E-value=65 Score=26.25 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=9.3
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~ 369 (475)
+..|+.+.+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555555555555543
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.56 E-value=1.2e+02 Score=24.48 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHH
Q 011919 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGF 316 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~ 316 (475)
.+...++.|+.+....++..-... ...++...++. +...+..|+.+- ++.+.+.|..++. ...+.+ ...
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A 80 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL--ATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIA 80 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG--GGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh--hhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHH
Confidence 466677888888888877653321 01223333333 334455666543 4444455554432 222333 334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGG 390 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g 390 (475)
+..|+.+ +++.+.+.|..++. .-.+. +...+..|+.+-+..+ .+.|..++.. ..+.+. ..+..|
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~-~A~~~~ 150 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTP-LHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMH-RAAAKG 150 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHH-HHHHHT
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHH-HHHHcC
Confidence 5566664 44445555554432 22233 3344566776644433 4445444322 222333 334556
Q ss_pred CHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
+.+-+ +.+.+.|..+.. +..-.+. +...++.|+.+ +++.+++.|..++
T Consensus 151 ~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 151 NLKMV----HILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp CHHHH----HHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CHHHH----HHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 65544 444455543311 2222223 33344666654 3444555665544
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.55 E-value=63 Score=24.38 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+++++ --..++..+...+ .-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~~L~~~g~r~T~---qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTP---QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCH---HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH---HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345556665432 2233444444445 5567788888877776677777777777777777543
No 335
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.14 E-value=3.8e+02 Score=27.61 Aligned_cols=157 Identities=11% Similarity=0.035 Sum_probs=86.0
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 204 SMIKGFCNAGR---LEDACGLFKVMKRHG----CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 204 ~li~~~~~~~~---~~~a~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
.++...|..|+ .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--..
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~-----~~~~ek~~ 763 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA-----QLVNEADK 763 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC-----CSHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc-----CCHHHHHH
Confidence 45666777777 456778888776532 455543 23333445667777777777777763 34555667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh---CCCCCChhhHHHHHHHH
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEG-NLDEAYQLIDKVVA---GGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~ 351 (475)
++.+++...+.....++++...... +++. .. ..++.+..... ..+.|.+.+.+=.+ .........+..++...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888888888888887765433 3332 22 22333333321 22334444333111 11122233466677666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~ 369 (475)
...-.-++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 655444444444444443
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.04 E-value=1.5e+02 Score=22.90 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=31.2
Q ss_pred hcCChhHHHHHHHHhccCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011919 176 EKGDMIAADELMKGMGLIDLYP--DIITYVSMIK-G-----FCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 227 (475)
..|++-+|.++++..-+..-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777765543334 4455666665 2 2346777777777766554
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.52 E-value=85 Score=19.90 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
++.++..+++..-.++++..++++.+.| ..+...|-.-.+.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3444444444445555555555555555 34444444333333
No 338
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.43 E-value=1.3e+02 Score=22.07 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAPN 305 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 305 (475)
..++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~---f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc---cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 445666666677777777666664210 0112233333334444322 3455566666665554433
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.33 E-value=2.6e+02 Score=29.02 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=61.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS----------------- 409 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 409 (475)
++..+...|..+-|.++..- ++-+...--.+.++|...|++++|...|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45555666666655443221 122333223345567777788887777765432 1110
Q ss_pred ----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 011919 410 ----SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP----YVDKIVEHLKKSG 462 (475)
Q Consensus 410 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g 462 (475)
......|..++..+-+.+-++.+.++.+.+++.--..|.. .+..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0022367778888888888888888888888654233333 4555555555443
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.29 E-value=94 Score=20.35 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 360 AEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+.++++.+.+.+...+..|....+..+..
T Consensus 36 ~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 36 AEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33344433333323333333333333333
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.54 E-value=55 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344455555556677778888777776677777777777777777543
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.32 E-value=78 Score=23.86 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3345555555554443444433333333444333
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.60 E-value=1.4e+02 Score=28.26 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL---VAY-SALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..+|.+++.|...+.++.|..+.....--....+. ..| --+...+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555566666666666666666554311000000 111 1123344445566666666655554
No 344
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.43 E-value=1.9e+02 Score=23.23 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=9.7
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011919 317 CVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~ 336 (475)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 44455554444445554444
No 345
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=32.67 E-value=1.9e+02 Score=23.01 Aligned_cols=181 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
.+...+..|+ .++++.+.+.|..++..... ..+...+..|+.+-+..+++.-...-...+..-.+.+..+....
T Consensus 28 ~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 103 (223)
T 2f8y_A 28 ALHLAARYSR----SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103 (223)
T ss_dssp HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLA--CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
. .++++.+.+.|..++... -...+...+..|+ .++++.+.+.|..+......-.+.+...++.|+.
T Consensus 104 ~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--- 171 (223)
T 2f8y_A 104 V-----EGMLEDLINSHADVNAVDDLGKSALHWAAAVNN----VDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--- 171 (223)
T ss_dssp C-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH---
T ss_pred c-----HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH---
Q ss_pred HHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhccccC
Q 011919 433 AKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~a 474 (475)
++++.+++.|..++..... ..+....+.|..+.++-+++.+
T Consensus 172 -~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 172 -ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp -HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.60 E-value=54 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555566667888888877776677777777777777777544
No 347
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=32.29 E-value=56 Score=26.40 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+...++.|+.+.+..+++.-... ....+..-++. +...+..|+.+ +++.+.+.|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~~ 59 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIP-LHWSVSFQAHE----ITSFLLSKM 59 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG--TTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHhcCccc--cccCCCCCCCH-HHHHHHcCCHH----HHHHHHhcc
Confidence 45566777877766666543321 01123322333 33345556654 344444555
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.07 E-value=90 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444433333333333333333333
No 349
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.89 E-value=2e+02 Score=23.07 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 011919 423 LCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+..|+.+-+.++++.+++.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3455666655555566665553
No 350
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.66 E-value=2e+02 Score=23.10 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011919 213 GRLEDACGLFKVMKRHG 229 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g 229 (475)
.|.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 351
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.22 E-value=1.2e+02 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCccCHHhHHHHHHHHHHcC
Q 011919 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--GCVVSVKMMKVIFNLCEKAR 143 (475)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 143 (475)
..|++.+..- ..+++.+...+.+-.|.++++.+.+. +...+..|.--.+..+.+.|
T Consensus 26 ~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444432 23444444444455555555555554 43444444333444444444
No 352
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.89 E-value=1.1e+02 Score=24.86 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
..++.|+.+-+. .+.+.|..++.. -.+ .+...+..|+...+.++.+.+.+
T Consensus 183 ~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t-~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 183 IAARENRYDCVV----LFLSRDSDVTLKNKEGET-PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTCHHHHH----HHHTTTCCTTCCCTTSCC-HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhHHH----HHHHcCCCCCccCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566655433 333445444321 122 23334667778888888877765
No 353
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.42 E-value=2.1e+02 Score=22.97 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011919 347 LVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 347 li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 407 (475)
+|+++. +..+++.|+-.+.+|++.| .|....-..++.+.-.-|. +..|...++.....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 5578888888888888888 6655555555556555553 3345566666666674
No 354
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=29.40 E-value=1.9e+02 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHhcCC-HhHHhhcc
Q 011919 447 QGPYVDKIVEHLKKSGD-EELITNLP 471 (475)
Q Consensus 447 ~~~~~~~l~~~~~~~g~-~~~a~~l~ 471 (475)
+......++..+.+.|- ++.+..++
T Consensus 131 ~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 131 DLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34445556666666663 44444444
No 355
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.14 E-value=88 Score=23.27 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=6.1
Q ss_pred HhcCCHhHHhhcc
Q 011919 459 KKSGDEELITNLP 471 (475)
Q Consensus 459 ~~~g~~~~a~~l~ 471 (475)
.+.|+.+.++-++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3445555544443
No 356
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.61 E-value=3.5e+02 Score=24.94 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHhc---C---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHh
Q 011919 249 SMERALELLGEMEKE---G---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-A---PNRVTISTLIKGFCV 318 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~---~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~---p~~~~~~~li~~~~~ 318 (475)
..++...+++..... + .++..+......++.. ..|+..+++.+++.+..... . ....+...+-
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~----- 238 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT----- 238 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHH-----
Confidence 456677777776653 1 1123344455555544 46888888888877764321 0 0112222221
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 011919 319 EGNLDEAYQLIDKVVAGGS---VSSGGCYSSLVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ- 391 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~- 391 (475)
+...... ..+...+..++.++. +.++.+.|+..+.+|.+.|..|....-..+..+.-.-|.
T Consensus 239 ------------~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 239 ------------EIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ------------HHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ------------HHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 1111110 001112223444443 467999999999999999877765555555556555553
Q ss_pred ----HHHHHHHHHHHHHcCC
Q 011919 392 ----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 392 ----~~~a~~~~~~~~~~~~ 407 (475)
...|...++.....|.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 3345566666666663
No 357
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.04 E-value=1e+02 Score=23.17 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=56.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLG 389 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 389 (475)
+...++.|+.+....+++.-...-...+..-++ .+...+..|+.+- ++.+.+.|..++.. -.+.|..+ +..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSV----VEYLLQHGADVHAKDKGGLVPLHNA-CSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChHHH----HHHHHhcCCCCCccCCCCCCHHHHH-HHc
Confidence 334567788877766664311111111222123 3344456777654 44444556554432 22344433 556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 390 GQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
|+.+- .+.+.+.|..+.. +..-++.+ ...+..|+.+ +++.+++.|..++.
T Consensus 86 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 86 GHYEV----AELLVKHGAVVNVADLWKFTPL-HEAAAKGKYE----ICKLLLQHGADPTK 136 (165)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CcHHH----HHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 77654 4455556653321 22222333 3345667665 34445556655443
No 358
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.70 E-value=3.9e+02 Score=24.87 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.+.+-|.++- .+.|++--...|..-.+.+...|++++|.++--...+ |+-.+..|.+.+-..=...|+..-.+.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~---giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc---ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 4445444333 2344444445555556666677777777766554433 223444444443333333444445555
Q ss_pred HHHHHHHcC
Q 011919 293 ILDRMEALG 301 (475)
Q Consensus 293 ~~~~m~~~~ 301 (475)
+|..+.+.|
T Consensus 417 YF~~Ll~~g 425 (494)
T 1bpo_A 417 YFGILLDQG 425 (494)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHhccC
Confidence 555555544
No 359
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.24 E-value=3.6e+02 Score=24.31 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGG----------------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
++.......+.+++.+.++.+...- ...-......+...|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667778888888888764321 01112344556677778888888888887775
No 360
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.67 E-value=2.4e+02 Score=22.01 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=77.8
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+...-...+..+.+.+.......+.+.+ . .++...-...+.++.+.|..+....+. ++.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHH
Confidence 3444444444444444422223333333 2 245555566666777777654443333 3333 356666666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++.+.++.+ +...+..+.. .++..+-...+.++.+.++. ++...+..+.. .++..+-...+.++...|..
T Consensus 99 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK-----DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCch
Confidence 777776643 3333333333 34666666666666666653 34444444444 24555555566666666553
Q ss_pred HHHHHHHHHHHH
Q 011919 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++...+..+.+
T Consensus 169 -~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 -RVRAAMEKLAE 179 (201)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHh
Confidence 34444444443
No 361
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.09 E-value=2.3e+02 Score=22.52 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=7.3
Q ss_pred HhcCChhHHHHHHHH
Q 011919 105 RIKQNPSIIIDVVEA 119 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~ 119 (475)
...|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 344555555544443
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.83 E-value=4.5e+02 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHh
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~ 190 (475)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444555555555555555555444
No 363
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.73 E-value=99 Score=25.54 Aligned_cols=16 Identities=0% Similarity=-0.093 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 011919 423 LCRKNHSVEAAKLARF 438 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~ 438 (475)
.++.|+.+-+.-+++.
T Consensus 228 A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 228 AAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhC
Confidence 3456666555554444
No 364
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=23.66 E-value=2.4e+02 Score=21.22 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHhcCCHhHHhhccc
Q 011919 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
....+.|+.+.++-+++
T Consensus 151 ~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33445566665555544
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.13 E-value=2.9e+02 Score=22.12 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcC
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIG 406 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~ 406 (475)
+..+++.|+-.+.+|++.|-.|....-..++.+.-..|. +..|...++.....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 456777777777777777765555444445545444442 334445555555555
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.07 E-value=6.4e+02 Score=26.07 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhcC
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGKG 285 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 285 (475)
.-|..++..+-+.+.++.+.++-+...+.-..-.+ ....|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788899999999999999988888763211111 1346888888877655
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.40 E-value=59 Score=23.65 Aligned_cols=52 Identities=6% Similarity=-0.145 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
|.-.|...+..++.+-|.++++-+.+.| +...|.+++..|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566667778888888888777766 566777777777777777777665
No 368
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.37 E-value=2.7e+02 Score=26.65 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 97 YNRACEMSR--IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 97 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
+...+..+. ...+.......++++..+=..-+..-..-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HhcCChhHHHH
Q 011919 175 CEKGDMIAADE 185 (475)
Q Consensus 175 ~~~g~~~~a~~ 185 (475)
+++|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 369
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.13 E-value=97 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.7
Q ss_pred HHcCCHHHHHHHHHh
Q 011919 140 EKARLANEAMWVLRK 154 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~ 154 (475)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444444
No 370
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.01 E-value=1.3e+02 Score=26.60 Aligned_cols=189 Identities=11% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
...+...+..|+.+.+..+++. ...+......-...+...+..|+. ++++.+++.|..++...-...+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--------------------HHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCc
Q 011919 355 KRLKEAEKLFSKMLASGVKPDG--------------------LACSVMIRELCLGG--QVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
|+.+-+..+++...+.|..++. .-.+.|..+ +..| +.+-+..+++. |..+...
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~----ga~~~~~ 169 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL----GASPTAK 169 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH----TCCTTCC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc----CCCCccc
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR---IWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
...-.+.+...+..|+.+-+..+++.-.... +......-...+......|+.+.+.-+++.+
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 234 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
No 371
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.48 E-value=1.3e+02 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.-.|.++++.+.+.+...+..|....++.+...|
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444444433334444333344444333
No 372
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.17 E-value=1.6e+02 Score=20.25 Aligned_cols=34 Identities=26% Similarity=0.183 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
..+.|.++++.+..+|.. +|..++.++...|+.+
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH
Confidence 445555555555554432 2555555554444443
No 373
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.93 E-value=2e+02 Score=20.78 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhccc
Q 011919 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
+|+.+....+.|++..--.-+..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544443333334456667788888888877654
No 374
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.87 E-value=3e+02 Score=21.45 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
..+.+..+++.+.+.|+.-|...-...+....+.|.+ ....+-.++...|+.++ .....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 4566778888888888886666556666666554432 23556677777887532 22222222111122344555555
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 011919 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFM 439 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 439 (475)
+-.... .+.++.....-++..+.+.| .++.+..+++++
T Consensus 125 Kk~~~~-~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 125 KLANRY-SHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhhc-cCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 433321 11112333445555566666 455555555554
No 375
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.81 E-value=3.4e+02 Score=22.00 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 407 (475)
+..+++.|+-.+.+|++.|-.|....-..++.+.-.-|. +..|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 456777788888888777766655555555555444442 3345555666666664
No 376
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.81 E-value=1.2e+02 Score=22.56 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHCCCCcCHHH
Q 011919 217 DACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~ 236 (475)
.|.++++.+.+.+...+..|
T Consensus 31 sa~eI~~~l~~~~~~is~aT 50 (139)
T 3mwm_A 31 SAQELHDMLKHKGDAVGLTT 50 (139)
T ss_dssp EHHHHHHHHHHTTCCCCHHH
T ss_pred CHHHHHHHHHHhCCCCCHHH
Confidence 34444444433333333333
No 377
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.79 E-value=1.2e+02 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=8.7
Q ss_pred chHHHHHHhhcCCCcHHHhhh
Q 011919 31 PAERFYTHLQKNPNNIEKTLA 51 (475)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~l~ 51 (475)
|.+.+.+.+.+...++.++..
T Consensus 36 Pv~DFk~lL~~~~~~~~~A~~ 56 (152)
T 1rw2_A 36 PAENFRVLVKQKKASFEEASN 56 (152)
T ss_dssp TTHHHHHHHHSSSSCHHHHHH
T ss_pred cHHHHHHHHHcCchhHHHHHH
Confidence 444444444443333444333
No 378
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.69 E-value=1e+02 Score=25.82 Aligned_cols=191 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHh--cCCHHHHHHHHHH----------HHhC
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAP-------NRVTISTLIKGFCV--EGNLDEAYQLIDK----------VVAG 335 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~~--~g~~~~a~~~~~~----------~~~~ 335 (475)
...+...++.|+.+.+..+++...+.+... +..-.+.|..++.. .|+.+-+..+++. +...
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHH
Q 011919 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA----------------CSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~ 399 (475)
-...+..-++.|..+..... .++.+.+.+.|..++... -...+...+..|+. ++.
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v 164 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRN-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL----AIV 164 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH----HHH
T ss_pred cccccCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH----HHH
Q ss_pred HHHHH---cCCCCCCchhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcC
Q 011919 400 EDIEK---IGFLSSVDSDIHSVLLLGLCRKNH-----SVEAAKLARFMLKKRIWL---------QGPYVDKIVEHLKKSG 462 (475)
Q Consensus 400 ~~~~~---~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~---------~~~~~~~l~~~~~~~g 462 (475)
+.+.+ .|..+......-.+.+...+..|+ .+...++++.+++.|..+ ....-...+....+.|
T Consensus 165 ~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g 244 (273)
T 2pnn_A 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244 (273)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC
Q ss_pred CHhHHhhccccC
Q 011919 463 DEELITNLPKIG 474 (475)
Q Consensus 463 ~~~~a~~l~~~a 474 (475)
+.+.++.|++.+
T Consensus 245 ~~~iv~~Ll~~g 256 (273)
T 2pnn_A 245 KIGVLAYILQRE 256 (273)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHCC
No 379
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.65 E-value=3.3e+02 Score=21.82 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHHCC
Q 011919 214 RLEDACGLFKVMKRHG 229 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g 229 (475)
|.+.|+-.+-+|++.|
T Consensus 22 DpDAAly~LaRMl~~G 37 (201)
T 3bge_A 22 APDAALYWYARILTAG 37 (201)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3333333333333333
No 380
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.41 E-value=2e+02 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011919 317 CVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|...|+.++.
T Consensus 113 ~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456777777777777654
No 381
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.32 E-value=3.1e+02 Score=21.37 Aligned_cols=116 Identities=6% Similarity=0.002 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
..+.+..++..+.+.|.--|...-...++...+.|.+ ....+-.++..+|+..+ .....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 4566777888888888876665556666666555443 23566777888887642 12222211111112344555555
Q ss_pred HHHH-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 011919 366 KMLA-SGVKPDGLACSVMIRELCLGG-QVLEGFCLYEDIEK 404 (475)
Q Consensus 366 ~m~~-~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 404 (475)
+-.. ..-.++......+++.+.+.| ..+.+..+++.+..
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 4322 111222333445555555555 55556666665544
Done!