BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011920
         (475 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KLR|A Chain A, Bovine H-Protein At 0.88 Angstrom Resolution
          Length = 125

 Score = 29.6 bits (65), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 336 SYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAF 395
           S +S  V E+++ALA+     +    ++ WL K    F   +EL E +SE+ +E  + + 
Sbjct: 66  SPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT--FSNPSELDELMSEEAYEKYIKSI 123

Query: 396 EK 397
           E+
Sbjct: 124 EE 125


>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
           Hyperthermophile Sulfolobus Solfataricus. Crystal
           Structure Of The Y41f Mutant.
 pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
           Hyperthermophile Sulfolobus Solfataricus. Crystal
           Structure Of The Y41f Mutant
          Length = 210

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 376 ENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEA 411
           EN    H++E    LI+D FE AY+     Y N+ A
Sbjct: 153 ENHFQNHIAEIPIILILDEFEHAYYLQ---YKNKRA 185


>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
           Hyperthermophile Sulfolobus Solfataricus. 2.3 A
           Resolution Structure Of Recombinant Protein With A
           Covalently Modified Tyrosin In The Active Site.
 pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
           Hyperthermophile Sulfolobus Solfataricus. 2.3 A
           Resolution Structure Of Recombinant Protein With A
           Covalently Modified Tyrosin In The Active Site
          Length = 210

 Score = 28.5 bits (62), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 376 ENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEA 411
           EN    H++E    LI+D FE AY+     Y N+ A
Sbjct: 153 ENHFQNHIAEIPIILILDEFEHAYYLQ---YKNKRA 185


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,082,676
Number of Sequences: 62578
Number of extensions: 438568
Number of successful extensions: 1050
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 5
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)