Query 011920
Match_columns 475
No_of_seqs 184 out of 372
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.8 2E-21 4.3E-26 177.4 7.6 142 237-398 2-160 (160)
2 KOG2261 Polycomb enhancer prot 99.1 1.1E-11 2.3E-16 136.8 0.4 405 17-451 187-610 (716)
3 KOG0954 PHD finger protein [Ge 99.0 3.2E-10 7E-15 124.2 3.5 113 287-402 132-253 (893)
4 KOG2261 Polycomb enhancer prot 98.6 6.7E-09 1.5E-13 115.0 1.1 97 327-443 1-97 (716)
5 KOG0955 PHD finger protein BR1 98.4 3.9E-07 8.4E-12 104.9 5.9 185 217-418 29-227 (1051)
6 COG5141 PHD zinc finger-contai 96.8 0.00082 1.8E-08 72.4 3.2 44 353-401 130-173 (669)
7 KOG0954 PHD finger protein [Ge 71.3 3.7 8E-05 47.2 3.5 26 421-446 499-525 (893)
8 PF07310 PAS_5: PAS domain; I 42.3 16 0.00035 32.8 1.8 29 423-451 4-32 (137)
9 PF06252 DUF1018: Protein of u 38.9 37 0.00081 30.0 3.6 39 358-401 1-40 (119)
10 COG2896 MoaA Molybdenum cofact 31.1 30 0.00064 36.5 1.9 36 329-368 4-39 (322)
11 PF00046 Homeobox: Homeobox do 27.5 2.3E+02 0.0051 21.1 5.9 51 381-439 5-55 (57)
12 COG4325 Predicted membrane pro 27.3 24 0.00052 38.3 0.5 36 2-42 130-165 (464)
13 PF08006 DUF1700: Protein of u 27.2 1.3E+02 0.0027 28.3 5.2 57 363-429 4-61 (181)
14 PF10176 DUF2370: Protein of u 22.6 63 0.0014 32.7 2.4 22 419-440 203-224 (233)
15 KOG1536 Biotin holocarboxylase 22.2 1.2E+02 0.0027 34.4 4.7 70 353-438 518-592 (649)
16 KOG0955 PHD finger protein BR1 20.3 57 0.0012 39.4 1.8 30 422-451 467-497 (1051)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.84 E-value=2e-21 Score=177.40 Aligned_cols=142 Identities=31% Similarity=0.386 Sum_probs=102.7
Q ss_pred ceEEEEE--EecccccchhccccccccCCCccccc--eeeecCCCCcccccCCccchhhhhhhHHHhhhcCCCCC-----
Q 011920 237 KEWHLVV--KKDGETRYSFKAQRIMRPSSFNRFTH--AILWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVS----- 307 (475)
Q Consensus 237 ~~~ri~I--kL~~~t~~~~kAq~~ir~~~SNr~th--~~~w~~~~~wklEfpd~~~~~~fK~~~eEe~Ernlqaa----- 307 (475)
|.++|.| +|.++...++... +..++++|+.+. ...-...+.-.+ .+.++++|+|++
T Consensus 2 R~~~ld~~~~l~I~~~~d~~~~-~~~~~~~~~~~~~~~~~~gv~~~~~~--------------~~~e~e~~~q~~~~~~~ 66 (160)
T PF10513_consen 2 RPRRLDIKKPLPIFREEDLDDL-DESEDSSNKNQAVPQSPTGVEKEEKL--------------SKQEWEKHLQKPISASQ 66 (160)
T ss_pred CCCCCCCCCCeeEEechhcccc-cccccccccccccccccCCccchhhc--------------cccccccccccccchhh
Confidence 3456777 8888887777777 677777777652 111111111000 223567777765
Q ss_pred --------CCCCCCCCeeeEecCccCCCCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHhhhhhcccccC
Q 011920 308 --------VSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENEL 379 (475)
Q Consensus 308 --------s~~~IPtP~Vr~V~~Yd~~Y~~~F~rP~sYIR~s~eEv~~ald~~~veYDMDeEDEeWL~~~N~kr~~k~dg 379 (475)
....||+|.++.++ |+..|...|.+|.+||||+...+. .++ ..|+||||++|+.||+.+|+++ +..+
T Consensus 67 ~~~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e-~~~-~~veYDmDeeD~~wL~~~N~~r--~~~~ 141 (160)
T PF10513_consen 67 NSKSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVE-DLD-EGVEYDMDEEDEEWLELLNKKR--KSDG 141 (160)
T ss_pred hhhcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHH-Hhc-cCcCCCCchHHHHHHHHHHHHh--hhcC
Confidence 23559999999878 998899999999999999941111 112 2899999999999999999986 3456
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 011920 380 HEHVSEDTFELIVDAFEKA 398 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~ 398 (475)
..+||++.||.|||+|||+
T Consensus 142 ~~~ls~~~FE~~md~lEke 160 (160)
T PF10513_consen 142 LEPLSEEDFEIIMDRLEKE 160 (160)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999985
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.12 E-value=1.1e-11 Score=136.76 Aligned_cols=405 Identities=17% Similarity=0.092 Sum_probs=282.9
Q ss_pred CCCccceeeeeeecccCceeeeeeeccCcchHHHHHHHHHHHHhcCccc-------cccCCCCCCCCccccccccccccc
Q 011920 17 DPPIARTGMCRIFGTMQLIPMFSLDFSAVPSCFMYIHHCMLVRFMRPPS-------VNSSASEDDSSEEEDVDYVCESKT 89 (475)
Q Consensus 17 ~~~~~~~g~c~~~~~~~~~p~~s~~fsa~p~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 89 (475)
+-++-.-+.|+.+|+ +.|+|+.+|+-+|..++..|.++.++..-.+| .++.. .+......+ -...-
T Consensus 187 ~~~~~s~~~~~~~~~--~~P~~~~~~~i~~~s~~~~~~~l~~~~~~~~~~~~~~~y~r~k~---~~~~~~~~~--~~~~Q 259 (716)
T KOG2261|consen 187 EGEMSSEVEPERKGA--YKPLLSAPFAIILLSPMDTMEALKLRVLKESFFSSKYDYWREKR---KIEGGPKAQ--MTSQQ 259 (716)
T ss_pred ccccccccchhhhhc--cCccccCcchhhcCCHHHHHhhhhhhhhhhhhhhHHHHHHhhhc---cccCCchhh--hhhhc
Confidence 344556689999999 89999999999999999999999999998887 22211 111111100 00001
Q ss_pred cc-ccccCCCCeEeecCccccccccccc----hhhccccchhhhhhhhhhccccccCCCCccccccccCcchhhhhhccc
Q 011920 90 VT-PVVDNSVNKVALHPSVRSSKLAARN----VQYRSSLNSRAIQKRRSSLRRRRARNPSLIGSQKASGALVSDLTSCRK 164 (475)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~v~~~~~~g~~----~~~~~~~~~~~~q~rrss~r~~~~r~~~~~~~~~~~~~~~s~~~~~~~ 164 (475)
.. |..+..+..+.+|++++.+++++|+ .|||......-.+.||.+...+.|++-...++...++....|+- .++
T Consensus 260 ~~ppv~~~~~yv~fr~r~~r~~~~trr~~~~s~~~een~~e~~~~~Rr~~~~~~~a~~l~~~~~k~e~~~~d~~~s-~~k 338 (716)
T KOG2261|consen 260 PLPPVFDADPYVCFRRRESRHSRKTRRSSLNSEQEEENDAESVFAFRRRRGCLYYAQRLLEKAHKRENKKEDFDPD-KRK 338 (716)
T ss_pred CCCCCCCCCCceecccccccchhhccccccchhhhhhhcccchHHHhhhhhccccchhHHHhhcchhccccccCcc-hhh
Confidence 11 3446788889999999999999999 89999999999999999999999998888777433333333322 222
Q ss_pred CCCCCCcccchhhhhhccc--cccchhhhcchhhhhhhhhccCcceeecceEEEecCceeeecCcEEEEEeCCCceEEEE
Q 011920 165 SSIPSSSAVSKSKLRSSLQ--HSSVLSIKEVSSTVDSLMLDLDRSCCCVSILVMESDRCCRVEGANVILEMSHSKEWHLV 242 (475)
Q Consensus 165 ~~~~~~~~~s~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~c~an~li~~~dr~~re~ga~VelE~~dg~~~ri~ 242 (475)
. ..-+++..|.||+.. ..++.+=.. ....+......+..+|.++......++|=|+.+....+..+.+++|..+
T Consensus 339 ~---r~~lt~~~~~rr~i~~~rrr~g~g~r-v~~dr~~~~~dd~~~~~~~~~~~~~~~~~q~~~~~~r~~~sn~k~~~~~ 414 (716)
T KOG2261|consen 339 Y---RTCLTKLKKPRRCIGFARRRAGRGGR-VIPDRKPNNEDDFISSIDTTMTQSSLLRQQERTFSQRLSDSNLKEEQLA 414 (716)
T ss_pred h---heeeeeccchhHHHHHHHHhhccCCc-cccccCCcCcCCcccccccccccchhcccchhhhhhhccccccchhhcc
Confidence 2 235666767776663 333343222 2333455566788899999999999999999999999999999999999
Q ss_pred EEecccccchhccccccccCCCccccceeeecCCCCcccccCCccchhhhhhhHHHhhhcCCCCCCCCCC-CCCeeeEec
Q 011920 243 VKKDGETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVSVSKVI-PIPGVCEVL 321 (475)
Q Consensus 243 IkL~~~t~~~~kAq~~ir~~~SNr~th~~~w~~~~~wklEfpd~~~~~~fK~~~eEe~Ernlqaas~~~I-PtP~Vr~V~ 321 (475)
.+ ++.-.+++.+|.-++....+..+++..|. +.|..++.++..|.-|+.....+++..........+ +++....-.
T Consensus 415 ~~-d~s~~~~~i~q~~~r~~~~~~~~l~d~~~--~E~~~r~~~~~~~dk~~~~~~~~~~~~s~~~~~~~~~g~t~~~~~~ 491 (716)
T KOG2261|consen 415 SS-DLSQILSNIKQERLRPFQRRLINLQDVDN--DEWTSRKCDREVPDKFKDAYIDCYENTSDKQSSRVGPGITESQGQT 491 (716)
T ss_pred cc-ccccccccchheeecccccCccchhhccc--ccccchhhhhhcchhhccccccccccccccccccccCCccccCCCc
Confidence 99 99999999999889999999999999999 999999999999999999999888877765544555 343333322
Q ss_pred CccCCCCCCCCCCCccEEeehhhhhHhhhCCCcccCC--ChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcc
Q 011920 322 GYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDM--DSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAY 399 (475)
Q Consensus 322 ~Yd~~Y~~~F~rP~sYIR~s~eEv~~ald~~~veYDM--DeEDEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~s 399 (475)
.|....+--+..+.+|+-+...+...+......-||+ +++|...|... ...|+..++.+|+..
T Consensus 492 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~l~~q---------------~~~~~~~~~~~~~~~ 556 (716)
T KOG2261|consen 492 PFSQNAPMQSQPLVSLQQLNASESLSASSNSIALYDSTLNDEDDKYLDRQ---------------RAAFGASLDVFEKYH 556 (716)
T ss_pred hHhhhhhhhccchhhhhhhccchhhhccccchhhhhhhhcCccchhhHHH---------------HHHHhhhhhcchhhc
Confidence 2433322333334557777664444344444566764 34444444433 346778888888855
Q ss_pred cCCCC-CCCCHHHHHHHHHh-hChhHHHHHHHHHHHHHHhhhCCCceecccccc
Q 011920 400 FCSPD-DYSNEEAAVNLCLE-LGQKEVVLAVYNHWKQKRKQKRAALLRVFQAHG 451 (475)
Q Consensus 400 y~np~-~~~d~DeA~ellk~-lg~~~v~kaVYeYWk~KRqk~G~PLLR~fQp~~ 451 (475)
...+. +......+-..... ....+....+.+||..+|.....|+.+-++-..
T Consensus 557 ~~~~r~~~~~~~~~~~~~~~~p~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~v~ 610 (716)
T KOG2261|consen 557 LHVSRDDKPDVLGMNNVNGSYPPSAESKELLSDNWLAKRAQRSSPLNSDSQTVS 610 (716)
T ss_pred cccchhcccccccCCCccccccCcccccccccccchhhhhhcCCCccccccccc
Confidence 43221 11111111111111 123456778889999999999999998888776
No 3
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.96 E-value=3.2e-10 Score=124.22 Aligned_cols=113 Identities=29% Similarity=0.460 Sum_probs=94.8
Q ss_pred cchhhhhhhHHHhhhcCCCCC-CCCCCCCCeeeEecCccCCCCCCCCCCCccEEeehhh--------hhHhhhCCCcccC
Q 011920 287 QDWLDFKDLYKECSDRNAQVS-VSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDE--------VSRALAKRTANYD 357 (475)
Q Consensus 287 ~~~~~fK~~~eEe~Ernlqaa-s~~~IPtP~Vr~V~~Yd~~Y~~~F~rP~sYIR~s~eE--------v~~ald~~~veYD 357 (475)
..+..|.+.++.++|.++|.+ ++..||+|.|+++...-. ....|.+|..||+....+ .+..+.++.|.||
T Consensus 132 ~~y~~~~D~wk~ewekgvQvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcryd 210 (893)
T KOG0954|consen 132 DEYLDFADPWKQEWEKGVQVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYD 210 (893)
T ss_pred cceeecCCccchhhhccccccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcc
Confidence 466778888888999999987 678999999998764432 346899999999998743 2567788899999
Q ss_pred CChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCC
Q 011920 358 MDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCS 402 (475)
Q Consensus 358 MDeEDEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~n 402 (475)
+|..|.+||+.+|.++. -.|...|.+-+||+||..||..++.+
T Consensus 211 id~~d~awL~~~n~e~~--~~G~~~l~~~~~eRiieelE~~c~kq 253 (893)
T KOG0954|consen 211 IDDMDPAWLQLVNEERA--EMGSLELDEGTFERIIEELERRCKKQ 253 (893)
T ss_pred cccccHHHHHHhcchHH--hhCCcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999883 35678999999999999999999754
No 4
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=98.64 E-value=6.7e-09 Score=115.05 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=79.0
Q ss_pred CCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCCCCCC
Q 011920 327 NTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDY 406 (475)
Q Consensus 327 Y~~~F~rP~sYIR~s~eEv~~ald~~~veYDMDeEDEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~np~~~ 406 (475)
|+.+|+.|...|+.+.- . ++.+.++||||++||.||.. +. .+.+..||.|+|++|+.+...+
T Consensus 1 y~~~~k~~r~~~~~~~~--~--l~~~~p~yd~D~~de~~~s~---~~--------~s~~~~~e~~~dR~e~~s~~~~--- 62 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPI--W--LDREKPRYDHDSEDEDFLSV---QM--------ESKPLKFERMRDRLEKCSSHQK--- 62 (716)
T ss_pred CCcccccchhhhccccc--c--cCCCCCcccccchhHHHhhh---cc--------cccchhHHHHhcccccCCccce---
Confidence 67889999999988763 1 57789999999999999998 21 6889999999999999997663
Q ss_pred CCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhhCCCc
Q 011920 407 SNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAAL 443 (475)
Q Consensus 407 ~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~G~PL 443 (475)
+.+.+++..+.+ .+.....||+||..||+....|+
T Consensus 63 i~l~edk~~l~~--dd~~~v~~~e~~veK~~~~e~~~ 97 (716)
T KOG2261|consen 63 IYLEEDKKDLDE--DDQRSVEVYEYWVEKREEKEVPS 97 (716)
T ss_pred ecchhhhhcccc--ccceeeeeeehhhhhhhhhcccc
Confidence 334455555554 56678899999999999999995
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.37 E-value=3.9e-07 Score=104.86 Aligned_cols=185 Identities=21% Similarity=0.224 Sum_probs=120.2
Q ss_pred ecCceeeecCcEEEEEeCCCceEEEEE--EecccccchhccccccccCCCccccceeeecCCCCcccccCCccchhhhhh
Q 011920 217 ESDRCCRVEGANVILEMSHSKEWHLVV--KKDGETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWKLEFSNRQDWLDFKD 294 (475)
Q Consensus 217 ~~dr~~re~ga~VelE~~dg~~~ri~I--kL~~~t~~~~kAq~~ir~~~SNr~th~~~w~~~~~wklEfpd~~~~~~fK~ 294 (475)
..|+=+=.++-.+++++ +|+.++|++ ++..+..+..+++ ++.++++|+.|-...-..-+.-..++.. +.
T Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 99 (1051)
T KOG0955|consen 29 RNDRFYAQATRMVELDT-EGRVFQISIFPPLGKVNEDLITTE-EIFPNKSVHVNKNWERPSFDIQEKENKN-------NE 99 (1051)
T ss_pred cCceEEecccccccccc-ccceeecccCCcccccchhhcccc-cccccccccccccccCCccchhhhcccc-------cc
Confidence 55666667777889999 999999999 8999999999999 9999999999654332222222222211 11
Q ss_pred hHHHhhhcCCCCC--C---CCCCCCCeeeEecCccCCCCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHh
Q 011920 295 LYKECSDRNAQVS--V---SKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKF 369 (475)
Q Consensus 295 ~~eEe~Ernlqaa--s---~~~IPtP~Vr~V~~Yd~~Y~~~F~rP~sYIR~s~eEv~~ald~~~veYDMDeEDEeWL~~~ 369 (475)
. -....+++-. . ....|.+.++.++.+. ....-.+|..|+++..+.- ..++ ..++||||++|..||..+
T Consensus 100 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~-~~~~-~e~~y~~de~d~~wl~~~ 173 (1051)
T KOG0955|consen 100 R--PTLNKLSKDISPNAYTIPRSPQHKVREFELLR--PMDAPPRPNFYYDEIEKSK-ETLD-EEVEYDLDEEDYSWLDIM 173 (1051)
T ss_pred c--cchhhcccccCccccccccChhhhheeccccc--cccCCCCCCcchhhhccch-hhhc-cccccchHHHHHHHHhhh
Confidence 1 1112222211 1 1233344444444332 2345667777777765321 1223 378999999999999999
Q ss_pred hhhhcccccCCCCCCHHHHHHHHHHHHhcccC------CCC-CCCCHHHHHHHHHh
Q 011920 370 NNEFVTENELHEHVSEDTFELIVDAFEKAYFC------SPD-DYSNEEAAVNLCLE 418 (475)
Q Consensus 370 N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~------np~-~~~d~DeA~ellk~ 418 (475)
|..+. ..+...++.+.||.+||++||+++. .++ ..+++|++=.+|.+
T Consensus 174 n~~~~--~~~~~~v~~~~~~~~~dr~eke~~f~~~e~~~~~~~~~~~D~~C~iC~~ 227 (1051)
T KOG0955|consen 174 NELRT--RNGVFDVSIDTFELLVDRLEKESYFKNYELGDPKDALLEEDAVCCICLD 227 (1051)
T ss_pred hHHHh--hcCCccccccchhhhhhhHHHHHHhhhhhccCCCccccCCCccceeecc
Confidence 99874 4567899999999999999999863 222 34555665555554
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.81 E-value=0.00082 Score=72.43 Aligned_cols=44 Identities=41% Similarity=0.776 Sum_probs=38.8
Q ss_pred CcccCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccC
Q 011920 353 TANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFC 401 (475)
Q Consensus 353 ~veYDMDeEDEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~ 401 (475)
.|.||||+.|+-||.-+|+..- ..++|++-||.+|++||++++.
T Consensus 130 ~v~YdlDe~D~m~l~Ylne~~~-----~e~vS~e~fEii~t~lE~EWf~ 173 (669)
T COG5141 130 SVIYDLDEYDTMWLRYLNESAI-----DENVSEEAFEIIVTRLEKEWFF 173 (669)
T ss_pred ceeecccchhHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHh
Confidence 6899999999999999997552 2579999999999999999963
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=71.26 E-value=3.7 Score=47.17 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHhhhC-CCceec
Q 011920 421 QKEVVLAVYNHWKQKRKQKR-AALLRV 446 (475)
Q Consensus 421 ~~~v~kaVYeYWk~KRqk~G-~PLLR~ 446 (475)
...++-+||+||+.||+..+ +|||..
T Consensus 499 ~e~~vs~iynywklkrks~~n~~lipp 525 (893)
T KOG0954|consen 499 PEFAVSAIYNYWKLKRKSRFNKELIPP 525 (893)
T ss_pred chHHHHHHHHHHHHhhhccCCCcCCCC
Confidence 34678999999999999998 788743
No 8
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=42.27 E-value=16 Score=32.82 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCceecccccc
Q 011920 423 EVVLAVYNHWKQKRKQKRAALLRVFQAHG 451 (475)
Q Consensus 423 ~v~kaVYeYWk~KRqk~G~PLLR~fQp~~ 451 (475)
...+++|+||.++|...+.|.-.-|.|.-
T Consensus 4 ~~~~~l~~yW~~~r~~~~~P~R~didP~~ 32 (137)
T PF07310_consen 4 PSLRALLAYWRSLRGGRGMPSRSDIDPAD 32 (137)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhcCCHHH
Confidence 46789999999999988888766566553
No 9
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=38.88 E-value=37 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=29.5
Q ss_pred CChhhH-HHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccC
Q 011920 358 MDSEDE-EWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFC 401 (475)
Q Consensus 358 MDeEDE-eWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~ 401 (475)
||||+. ++|.....+.. ...||..+++.+|+.|++..+.
T Consensus 1 lddd~YR~~L~~~~Gk~S-----~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSS-----SKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred CCHHHHHHHHHHHhChhh-----HHHCCHHHHHHHHHHHHHccCc
Confidence 677776 56666554442 3589999999999999998773
No 10
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=31.14 E-value=30 Score=36.47 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=27.8
Q ss_pred CCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHH
Q 011920 329 VPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKK 368 (475)
Q Consensus 329 ~~F~rP~sYIR~s~eEv~~ald~~~veYDMDeEDEeWL~~ 368 (475)
..|.+|-.|+|.+-++.. + -.|.|+|-+.+..|+..
T Consensus 4 D~~gR~~~~LRiSvTdrC---N-frC~YCm~eg~~~~~~~ 39 (322)
T COG2896 4 DRFGRPVRYLRISVTDRC---N-FRCTYCMPEGPLAFLPK 39 (322)
T ss_pred cccCCEeceEEEEEecCc---C-CcccccCCCCCcccCcc
Confidence 579999999999985432 2 38999999997777653
No 11
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=27.50 E-value=2.3e+02 Score=21.06 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhh
Q 011920 381 EHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQK 439 (475)
Q Consensus 381 ~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~ 439 (475)
..+|+++.+.|...|+...| ++.++...+...+|.. ...|+.+..++|.+.
T Consensus 5 ~~~t~~q~~~L~~~f~~~~~------p~~~~~~~la~~l~l~--~~~V~~WF~nrR~k~ 55 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQENPY------PSKEEREELAKELGLT--ERQVKNWFQNRRRKE 55 (57)
T ss_dssp SSSSHHHHHHHHHHHHHSSS------CHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc------cccccccccccccccc--ccccccCHHHhHHHh
Confidence 47999999999999997443 3456666777766544 366777888888764
No 12
>COG4325 Predicted membrane protein [Function unknown]
Probab=27.29 E-value=24 Score=38.30 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=28.7
Q ss_pred chhhhHHHHHHHHhcCCCccceeeeeeecccCceeeeeeec
Q 011920 2 LSIFICAFLWSILYQDPPIARTGMCRIFGTMQLIPMFSLDF 42 (475)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~p~~s~~f 42 (475)
|.+|+|+|.++++.. ++=|-++-|-.+|+|-.||--
T Consensus 130 La~FlctFvysl~vl-----rtvg~e~d~~g~FIp~~avtv 165 (464)
T COG4325 130 LAIFLCTFVYSLGVL-----RTVGEERDGQGAFIPKVAVTV 165 (464)
T ss_pred HHHHHHHHHHHHHHH-----HHhhhccCccccceehHHHHH
Confidence 689999999999976 344566777799999888753
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.18 E-value=1.3e+02 Score=28.31 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCh-hHHHHHHH
Q 011920 363 EEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQ-KEVVLAVY 429 (475)
Q Consensus 363 EeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~-~~v~kaVY 429 (475)
++||+++.+.. ..+++++.|.+|+-+|..-...-.+=.++++ .+.++|+ +++++++.
T Consensus 4 ~efL~~L~~~L-------~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEee---ii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 4 NEFLNELEKYL-------KKLPEEEREEILEYYEEYFDDAGEEGKSEEE---IIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHH---HHHHcCCHHHHHHHHH
Confidence 57999998766 2599999999999998866433211123343 4455654 45666665
No 14
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.62 E-value=63 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.9
Q ss_pred hChhHHHHHHHHHHHHHHhhhC
Q 011920 419 LGQKEVVLAVYNHWKQKRKQKR 440 (475)
Q Consensus 419 lg~~~v~kaVYeYWk~KRqk~G 440 (475)
+|--=+++.|++||+-||.++.
T Consensus 203 ~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 203 FGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445589999999999998863
No 15
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=22.17 E-value=1.2e+02 Score=34.45 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=42.7
Q ss_pred CcccCCChhh-----HHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHH
Q 011920 353 TANYDMDSED-----EEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLA 427 (475)
Q Consensus 353 ~veYDMDeED-----EeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~ka 427 (475)
+|-.+.+..- -.||..+|+++.. .++ .-.+|+++.++ .+ .++.....+.+.|...+...
T Consensus 518 GCGiNVtN~~PT~cLN~ll~~~n~e~~~-----~~l-~~k~EkLiA~~-----~n-----~fe~~~k~f~d~G~~silp~ 581 (649)
T KOG1536|consen 518 GCGINVTNDGPTTCLNDLLDEMNEERNL-----LHL-AIKAEKLIAAV-----FN-----KFEKYFKLFMDQGPKSILPL 581 (649)
T ss_pred eeeeEecCCCCceeHHHHHHhhchhhcc-----ccc-hhhHHHHHHHH-----HH-----HHHHHHHHHHhhCHHhHhHH
Confidence 4445554432 4799999988732 233 56666665432 11 12334445555688889999
Q ss_pred HHHHHHHHHhh
Q 011920 428 VYNHWKQKRKQ 438 (475)
Q Consensus 428 VYeYWk~KRqk 438 (475)
-|+||+.--|+
T Consensus 582 YYeyWLHS~Q~ 592 (649)
T KOG1536|consen 582 YYEYWLHSNQR 592 (649)
T ss_pred HHHHHhccCcE
Confidence 99999876554
No 16
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=20.26 E-value=57 Score=39.42 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHhhh-CCCceecccccc
Q 011920 422 KEVVLAVYNHWKQKRKQK-RAALLRVFQAHG 451 (475)
Q Consensus 422 ~~v~kaVYeYWk~KRqk~-G~PLLR~fQp~~ 451 (475)
...+..|..||..||+.+ |.||+++||..-
T Consensus 467 ~~~~~~i~~~w~~kR~~r~g~pLl~~lq~~~ 497 (1051)
T KOG0955|consen 467 PQFMDRICKYWYLKRLSRNGAPLLGRLQSLS 497 (1051)
T ss_pred chhhhhhhhhHHHHHHhhCCcchhhhhhhhh
Confidence 358899999998888776 569999999876
Done!