Query 011920
Match_columns 475
No_of_seqs 184 out of 372
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt9_A Probable 30S ribosomal 71.3 5.6 0.00019 34.8 5.2 55 385-451 45-99 (116)
2 4b19_A PEPA1; toxin, toxin apo 69.0 2.5 8.5E-05 29.0 1.9 18 422-439 13-30 (30)
3 1wh5_A ZF-HD homeobox family p 29.3 97 0.0033 24.5 5.5 56 380-440 21-77 (80)
4 3dvk_B Voltage-dependent R-typ 22.0 43 0.0015 21.6 1.6 15 424-438 8-22 (23)
5 3k2a_A Homeobox protein MEIS2; 17.5 3.3E+02 0.011 20.5 6.6 62 380-446 2-63 (67)
6 3nnf_A CURA; non-HAEM Fe(II)/a 16.2 87 0.003 31.9 3.3 38 380-417 22-59 (344)
7 1b0n_B Protein (SINI protein); 14.4 91 0.0031 23.9 2.3 37 357-399 7-43 (57)
8 1ccw_B Protein (glutamate muta 12.9 3E+02 0.01 29.2 6.4 64 381-450 6-69 (483)
9 3dve_B Voltage-dependent N-typ 11.6 48 0.0016 21.4 -0.1 15 424-438 7-21 (23)
10 2kv5_A FST, putative uncharact 9.5 55 0.0019 22.8 -0.4 16 423-438 15-30 (33)
No 1
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=71.30 E-value=5.6 Score=34.80 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhhCCCceecccccc
Q 011920 385 EDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAALLRVFQAHG 451 (475)
Q Consensus 385 Ed~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~G~PLLR~fQp~~ 451 (475)
.|..|.+=..||...+.+ ..+.+.++. -+.+|-+||+.||.+.+++-|..+|.+-
T Consensus 45 ~DAWe~LK~eLEsK~WIs------e~e~i~lLN------~~TeiIN~WQe~~~~~k~~~~~eaq~kF 99 (116)
T 2kt9_A 45 ADAWQQLKDELEAKHWIA------EADRINVLN------QATEVINFWQDLKNQNKQISMAEAQGKF 99 (116)
T ss_dssp SCHHHHHHHHHHHSTTSC------HHHHHHHHH------HHHHHHHHHHHHHHHTCCCCHHHHHTTC
T ss_pred ccHHHHHHHHHhcCCCCC------HHHHHHHHH------HHHHHHHHHHhhhhccccCCHHHHHhhC
Confidence 477888888888766543 555666555 4678999999999966665555565553
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=69.03 E-value=2.5 Score=28.97 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 011920 422 KEVVLAVYNHWKQKRKQK 439 (475)
Q Consensus 422 ~~v~kaVYeYWk~KRqk~ 439 (475)
...+.+.|.||+++|.++
T Consensus 13 sGcivalF~hWL~~r~~k 30 (30)
T 4b19_A 13 SGCAIAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 457889999999999764
No 3
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=29.33 E-value=97 Score=24.46 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHH-HHHHhhhC
Q 011920 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHW-KQKRKQKR 440 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYW-k~KRqk~G 440 (475)
...+|.++.+.|...||+..+-++ .++..+-.++...++.. +.+...| .++|.+..
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~~~~~--yp~~~~r~~La~~lgL~---~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 21 RTKFTAEQKERMLALAERIGWRIQ--RQDDEVIQRFCQETGVP---RQVLKVWLHNNKHSGP 77 (80)
T ss_dssp SCCCCHHHHHHHHHHHHHHTSCCC--TTTHHHHHHHHHHSCCC---HHHHHHHHHHHSSSSS
T ss_pred CccCCHHHHHHHHHHHHhccCcCC--CcCHHHHHHHHHHhCCC---cccccCCccccCcCCC
Confidence 357999999999999999544333 34556666677766643 3344557 45555543
No 4
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=22.04 E-value=43 Score=21.64 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhh
Q 011920 424 VVLAVYNHWKQKRKQ 438 (475)
Q Consensus 424 v~kaVYeYWk~KRqk 438 (475)
..--|++||++.|++
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 455799999988875
No 5
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=17.49 E-value=3.3e+02 Score=20.48 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhhCCCceec
Q 011920 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAALLRV 446 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~G~PLLR~ 446 (475)
...+|.++.+.+.+.|+.... +| +.+.++-.++...++... ..|-..-.++|.+..++++..
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~-~p--yp~~~~r~~La~~~~l~~--~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLT-HP--YPSEEQKKQLAQDTGLTI--LQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTT-SC--CCCHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHHSCC---
T ss_pred CCcCCHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHHHhCcCH--HHhhhhhHHHHHHHhHHHHHH
Confidence 346889999999998884432 22 445555666666655432 345566689999888887754
No 6
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=16.17 E-value=87 Score=31.91 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHH
Q 011920 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCL 417 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk 417 (475)
..++++++.|.++..||+..|.-..++++.+|+.++.+
T Consensus 22 ~~~l~~~qve~~~~~fE~eGYLvlk~vFs~eEv~~l~~ 59 (344)
T 3nnf_A 22 SNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQK 59 (344)
T ss_dssp ---CCSHHHHHHHHHHHHHSEEEETTCSCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhhccCceEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999987777888887665544
No 7
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=14.44 E-value=91 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcc
Q 011920 357 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAY 399 (475)
Q Consensus 357 DMDeEDEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMDrFEK~s 399 (475)
.+++-|++||.-+.+.+. ..+|.+++..++....+.+
T Consensus 7 ~~~~~d~ewl~LI~~Ak~------lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKE------ANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp --CCCCHHHHHHHHHHHH------TTCCHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHhccCC
Confidence 367889999999987552 4699999999998776654
No 8
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B* 1i9c_B*
Probab=12.86 E-value=3e+02 Score=29.23 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhhCCCceeccccc
Q 011920 381 EHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAALLRVFQAH 450 (475)
Q Consensus 381 ~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~G~PLLR~fQp~ 450 (475)
..++.++|.++=..+=+.+-.. .-++.++++..++.+.... .|.+=+.+|.+.|.||+|++-.-
T Consensus 6 ~~~~~~~~~~~r~~~l~~~~~~--~~~d~~e~v~y~~~~~~~k----~f~~~l~~~~~~~~~liqp~aGf 69 (483)
T 1ccw_B 6 KKWTDEEFHKQREEVLQQWPTG--KEVDLQEAVDYLKKIPAEK----NFAEKLVLAKKKGITMAQPRAGV 69 (483)
T ss_dssp SCCCHHHHHHHHHHHGGGSGGG--GGCCHHHHHHHHHTSCGGG----CHHHHHHHHHHHTCCEEECCCCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCc--cccCHHHHHHHHhcCCccc----chHHHHHHHHHcCCeeecCCCCC
Confidence 4799999998766665554221 1357899999999865443 67777899999999999886544
No 9
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=11.65 E-value=48 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhh
Q 011920 424 VVLAVYNHWKQKRKQ 438 (475)
Q Consensus 424 v~kaVYeYWk~KRqk 438 (475)
.+--|++||++.|.+
T Consensus 7 AallI~d~~r~~k~~ 21 (23)
T 3dve_B 7 AALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 456789999887654
No 10
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=9.51 E-value=55 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 011920 423 EVVLAVYNHWKQKRKQ 438 (475)
Q Consensus 423 ~v~kaVYeYWk~KRqk 438 (475)
.++..+.+||+++|..
T Consensus 15 Gvvl~L~d~WLn~r~~ 30 (33)
T 2kv5_A 15 GLVLEMISRVLDEEDD 30 (33)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHccccc
Confidence 4788999999999873
Done!