Query 011920
Match_columns 475
No_of_seqs 184 out of 372
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 46.3 12 0.00089 28.1 4.7 50 380-434 21-70 (80)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 21.7 25 0.0019 22.0 2.1 15 6-20 14-28 (30)
3 d1dcja_ d.68.3.3 (A:) SirA {Es 19.4 40 0.0029 24.7 3.3 46 201-247 27-81 (81)
4 d2jdqd1 d.361.1.1 (D:688-756) 14.0 25 0.0018 25.9 0.8 30 184-222 17-46 (69)
5 d1vlya1 b.44.2.1 (A:244-325) H 12.5 1.5E+02 0.011 21.8 5.1 38 214-251 22-61 (82)
6 d2ecba1 a.4.1.1 (A:8-83) Zinc 11.4 2.6E+02 0.019 19.9 6.3 52 382-441 10-61 (76)
7 d1b0na1 a.34.1.1 (A:74-108) Si 10.2 1E+02 0.0073 20.0 2.8 26 362-393 2-27 (35)
8 d1wi3a_ a.4.1.1 (A:) DNA-bindi 8.0 3.4E+02 0.025 18.9 6.7 54 380-441 11-65 (71)
9 d1gvna_ a.8.2.1 (A:) Plasmid m 7.3 84 0.0061 24.1 1.7 13 423-435 62-74 (88)
10 d1wrka1 a.39.1.5 (A:4-85) Trop 6.9 3.9E+02 0.028 18.7 5.7 39 382-420 8-46 (82)
No 1
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=46.35 E-value=12 Score=28.10 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHH
Q 011920 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQ 434 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~ 434 (475)
...+|.++.|.|-..||+..+.++ ..+.++..+++..+|.. +.+-..|-.
T Consensus 21 Rt~ft~~Q~~~L~~~fe~~~~~~~--~p~~~~~~~la~~~gl~---~~~i~vWFq 70 (80)
T d1wh7a_ 21 RTKFTAEQKEKMLAFAERLGWRIQ--KHDDVAVEQFCAETGVR---RQVLKIWMH 70 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSCCC--SSTTHHHHHHHHHSCCC---HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccccc--CcCHHHHHHHHHHHCCC---HHHeeeecc
Confidence 467999999999999999988664 45667788888888744 333445643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.66 E-value=25 Score=21.96 Aligned_cols=15 Identities=33% Similarity=1.001 Sum_probs=12.1
Q ss_pred hHHHHHHHHhcCCCc
Q 011920 6 ICAFLWSILYQDPPI 20 (475)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (475)
|..|.+.+|++.||-
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 446888999999984
No 3
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
Probab=19.38 E-value=40 Score=24.68 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=31.2
Q ss_pred hhccCcceeecceEEEecCce--------eeecCcEE-EEEeCCCceEEEEEEecc
Q 011920 201 MLDLDRSCCCVSILVMESDRC--------CRVEGANV-ILEMSHSKEWHLVVKKDG 247 (475)
Q Consensus 201 ~~~~~s~~c~an~li~~~dr~--------~re~ga~V-elE~~dg~~~ri~IkL~~ 247 (475)
++.++...-..-|.|+-.|.+ .+..|..| .+|- +|..|++.|++.|
T Consensus 27 k~al~~~~~G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~~-~~~~~~~~I~Kgg 81 (81)
T d1dcja_ 27 RKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET-DGLPYRYLIRKGG 81 (81)
T ss_dssp HHHHHHCCTTCCEEEEECSTTHHHHHHHHHHHTTCEEEEEEC-SSSSEEEEEECCC
T ss_pred HHHHHhCCCCCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEEE-eCCEEEEEEEECC
Confidence 334444444455666666765 68889987 5555 8899999997654
No 4
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=13.99 E-value=25 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=21.4
Q ss_pred cccchhhhcchhhhhhhhhccCcceeecceEEEecCcee
Q 011920 184 HSSVLSIKEVSSTVDSLMLDLDRSCCCVSILVMESDRCC 222 (475)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~s~~c~an~li~~~dr~~ 222 (475)
--|+..|+|++.-..+ =.|||||-|||--|
T Consensus 17 yGpalsIneLs~L~kG---------EkANvligqg~~v~ 46 (69)
T d2jdqd1 17 YGPALSINELSNLAKG---------EKANVLIGQGDVVL 46 (69)
T ss_dssp GCSCBCTTGGGGSCTT---------CEEEEEEETTEEEE
T ss_pred cCccccHHHHhhcCcc---------ccccEEEeCCCEEE
Confidence 4577778886554443 36999999998655
No 5
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=1.5e+02 Score=21.76 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.4
Q ss_pred EEEecCceeeecCcEEEEE-eCCCceEEEEE-Eecccccc
Q 011920 214 LVMESDRCCRVEGANVILE-MSHSKEWHLVV-KKDGETRY 251 (475)
Q Consensus 214 li~~~dr~~re~ga~VelE-~~dg~~~ri~I-kL~~~t~~ 251 (475)
|-.+.+-+||..|..|..- ..||..|-++| +.+.....
T Consensus 22 le~~~~~~wr~~G~Vv~a~~~~dg~~~~laVL~~d~~~~~ 61 (82)
T d1vlya1 22 LELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDS 61 (82)
T ss_dssp EEEEETTEEEEECEEEEEEECTTSCEEEEEEEETTCCTTC
T ss_pred eEeecCCCCccccEEEEEEECCCCcEEEEEEeCCCcccCc
Confidence 4455677999999999866 46899999988 66554433
No 6
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.39 E-value=2.6e+02 Score=19.92 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHhhhCC
Q 011920 382 HVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRA 441 (475)
Q Consensus 382 ~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYWk~KRqk~G~ 441 (475)
..|+++.+.|-..|++..| .+.++..++...+|... ..|-.+-.+||.+.++
T Consensus 10 ~~T~~Q~~~Le~~F~~~~~------P~~~~r~~LA~~l~l~~--~~V~~WFqNrR~r~k~ 61 (76)
T d2ecba1 10 EKTAEQLRVLQASFLNSSV------LTDEELNRLRAQTKLTR--REIDAWFTEKKKSKAL 61 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSS------CCHHHHHHHHHHTCCCH--HHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCC------CCHHHHHHHHHHhCCCH--HHHHHhHHHHHHHHHH
Confidence 5799999999999988654 34566777777776543 4555566788876543
No 7
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.15 E-value=1e+02 Score=19.96 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=19.9
Q ss_pred hHHHHHHhhhhhcccccCCCCCCHHHHHHHHH
Q 011920 362 DEEWLKKFNNEFVTENELHEHVSEDTFELIVD 393 (475)
Q Consensus 362 DEeWL~~~N~kr~~k~dg~~~LSEd~FE~IMD 393 (475)
|.+|-+.+.... ..-+|-++|-..++
T Consensus 2 DseW~~lVkeAM------~SGvSK~QFrEfle 27 (35)
T d1b0na1 2 DSEWEKLVRDAM------TSGVSKKQFREFLD 27 (35)
T ss_dssp CHHHHHHHHHHH------HSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHH------HccCCHHHHHHHHH
Confidence 778998887655 23699999987765
No 8
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.99 E-value=3.4e+02 Score=18.91 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHH-HHHHhhhCC
Q 011920 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHW-KQKRKQKRA 441 (475)
Q Consensus 380 ~~~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg~~~v~kaVYeYW-k~KRqk~G~ 441 (475)
...+|+++.+.|-..|++. ++ +.+.++..++...++... +.| .+| .++|.+..+
T Consensus 11 R~~~t~~Q~~~Le~~F~~~---~~--~P~~~~~~~La~~lgl~~--~qV-~~WFqNrR~k~kk 65 (71)
T d1wi3a_ 11 RTKISLEALGILQSFIHDV---GL--YPDQEAIHTLSAQLDLPK--HTI-IKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCSHHHHHHHHHHHHH---CS--CCCHHHHHHHHHHSCCCH--HHH-HHHHHHHHHHCCS
T ss_pred CccCCHHHHHHHHHHHHHh---cC--CCCHHHHHHHHHHhCCCH--HHH-HHHhHhhHhhhcc
Confidence 3689999999999999763 11 344666666777776443 233 455 777776543
No 9
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.34 E-value=84 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 011920 423 EVVLAVYNHWKQK 435 (475)
Q Consensus 423 ~v~kaVYeYWk~K 435 (475)
+=+++|++||++-
T Consensus 62 eELeaiheYwrsm 74 (88)
T d1gvna_ 62 EELQAVHEYWRSM 74 (88)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4588999999874
No 10
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=6.95 E-value=3.9e+02 Score=18.71 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhC
Q 011920 382 HVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELG 420 (475)
Q Consensus 382 ~LSEd~FE~IMDrFEK~sy~np~~~~d~DeA~ellk~lg 420 (475)
+||+++.+.+-+.|+..-..+.+-.++..+...+++.+|
T Consensus 8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg 46 (82)
T d1wrka1 8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLG 46 (82)
T ss_dssp HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcC
Confidence 466666666666555443322222455555555555443
Done!