BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011922
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 158/399 (39%), Gaps = 85/399 (21%)
Query: 119 AKIESVSADE---YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSK 175
A ++++ D YY + IG P Q + +L+DTGS P H + D FD +
Sbjct: 2 AMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTP--HSY--IDTYFDTER 57
Query: 176 SKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEA-- 233
S T+ S+ + Y GS +GF D +TI +
Sbjct: 58 SSTY-----------------------RSKGFDVTVKYTQGSW-TGFVGEDLVTIPKGFN 93
Query: 234 -----NIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKT 276
NI F F L I+ +GI+GL + + S++T+
Sbjct: 94 TSFLVNIATIFESENFFLPGIK--------WNGILGLAYATLAKPSSSLETFFDSLVTQA 145
Query: 277 KI-SYFSY-----CLP-SPYGSRG--YITFGKRNTVKTKFIKYTPIITTPEQSEYYDITL 327
I + FS LP + G+ G + G ++ I YTPI ++ YY I +
Sbjct: 146 NIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPI----KEEWYYQIEI 201
Query: 328 TGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKR--MKKYKRAKGA 385
+ +GG+ L + +DSG + RLP ++ A+ A + + ++
Sbjct: 202 LKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWT 261
Query: 386 GDILDTCYDLRAYETVVVPKITIH---------FLGGVDLELDVRGTLVVASVSQVCLGF 436
G L C+ PKI+I+ F + +L ++ ++ A ++ C F
Sbjct: 262 GSQL-ACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQ-PMMGAGLNYECYRF 319
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475
+ PS TN+ ++G G V +D A +R+GF C+
Sbjct: 320 GISPS-TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 51/270 (18%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTW-----TQCKPCIHCFQQRDPLFDPSKSKTFSKIP 183
Y + V++G KQ ++++DTGS W QC + C S TF+ P
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC----------KSSGTFT--P 61
Query: 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGY----- 238
+S++ K L F I Y DGS + G W D +TI +I G
Sbjct: 62 SSSSSYKNLG-------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADV 108
Query: 239 ----FTRYPFLLGCIRNSSG-DKSGASGIMGLDRSPVSIITKTKI--SYFSYCLPSPYGS 291
+ +G N + D SG D PV++ + KI + +S L SP
Sbjct: 109 TQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE 168
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G I FG + K +T+ S+ I+L +++ G F +
Sbjct: 169 TGTIIFGGVDNAKYSGKLVAEQVTS---SQALTISLASVNLKGSSFSFGDGAL------L 219
Query: 352 DSGAVITRLPSPMYAALRSAFRKRMKKYKR 381
DSG +T PS A L R+ + R
Sbjct: 220 DSGTTLTYFPSDFAAQLADKAGARLVQVAR 249
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 138/374 (36%), Gaps = 74/374 (19%)
Query: 142 VSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDN 201
SL+LD + W+ C + ++IPC+S TC L +P+
Sbjct: 24 ASLVLDVAGPLVWSTCD----------------GGQPPAEIPCSSPTCL-LANAYPAP-G 65
Query: 202 CNSRECHFN------IAY----VDGSGNSGFWATDRMTIQEANIKGYFTRY--PFLLGCI 249
C + C + AY V G+ +G + R + ++ L C
Sbjct: 66 CPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 250 RNS--SGDKSGASGIMGLDRS----PVSIITKTKISY-FSYCLPSPYGSRGYITFGKRNT 302
+ + G++G+ GL S P + + K++ F CLP+ G G FG
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 303 VKTKF---IKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVI-- 357
+F + YTP++T +Y I+ I VG ++P + +G V+
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEG-------ALATGGVMLS 235
Query: 358 TRLP-----SPMYAALRSAFRKRMKK-------YKRAKGAGDILDTCYDLRAYET----V 401
TRLP +Y L AF K + RA A CYD +
Sbjct: 236 TRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGY 295
Query: 402 VVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGF------AVYPSDTNSFLLGNVQQRG 455
VP + + GG D + + ++V C+ F A + +LG Q
Sbjct: 296 AVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355
Query: 456 HEVHYDVAGRRLGF 469
+ +D+ +RLGF
Sbjct: 356 FVLDFDMEKKRLGF 369
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 139/377 (36%), Gaps = 80/377 (21%)
Query: 142 VSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDN 201
SL+LD + W+ CK + ++IPC+S TC L +P+
Sbjct: 24 ASLVLDVAGPLVWSTCK----------------GGQPPAEIPCSSPTCL-LANAYPAP-G 65
Query: 202 CNSRECHFN------IAY----VDGSGNSGFWATDRMTIQEANIKGYFTRY--PFLLGCI 249
C + C + AY V G+ +G + R + ++ L C
Sbjct: 66 CPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 250 RNS--SGDKSGASGIMGLDRS----PVSIITKTKISY-FSYCLPSPYGSRGYITFGKRNT 302
+ + G++G+ GL S P + + K++ F CLP+ G G FG
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 303 VKTKF---IKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVI-- 357
+F + YTP++T +Y I+ I VG ++P + +G V+
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEG-------ALATGGVMLS 235
Query: 358 TRLPSPMYAALR-SAFRKRMKKYKRAKGA--------------GDILDTCYDLRAYET-- 400
TRLP Y LR +R M + +A A CYD +
Sbjct: 236 TRLP---YVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNL 292
Query: 401 --VVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGF------AVYPSDTNSFLLGNVQ 452
VP + + GG D + + ++V C+ F A + +LG Q
Sbjct: 293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352
Query: 453 QRGHEVHYDVAGRRLGF 469
+ +D+ +RLGF
Sbjct: 353 MEDFVLDFDMEKKRLGF 369
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 134/369 (36%), Gaps = 57/369 (15%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH---CFQQRDPLFDPSKSKTFSKIP 183
+EY V+IG P Q LL DTGS TW K C C R FDPS S TF
Sbjct: 18 EEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFKATN 75
Query: 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYP 243
N NI Y G N G + D + I + + Y
Sbjct: 76 YN-----------------------LNITYGTGGAN-GLYFEDSIAIGDITVTKQILAYV 111
Query: 244 ----------------FLLGCIRNSSGDKSGASGIMG--LDRSPVSIITKTKIS--YFSY 283
FL G + D + G + V++ + IS FS
Sbjct: 112 DNVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSV 171
Query: 284 CLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSY 343
+ + G+ + G NT+ I YT +++ ++D +TGI+V G + +
Sbjct: 172 YMNTNSGTGEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSA---AVRF 228
Query: 344 FTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVV 403
+ ID+G +PS +A + + + + Y +V
Sbjct: 229 SRPQAFTIDTGTNFFIMPS---SAASKIVKAALPDATETQQGWVVPCASYQNSKSTISIV 285
Query: 404 PKITIHFLGGVDLELDVRGTLV-VASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDV 462
+ + +++ + V L+ V ++ C+ F + P N +++GN+ R YD
Sbjct: 286 MQKSGSSSDTIEISVPVSKMLLPVDQSNETCM-FIILPDGGNQYIVGNLFLRFFVNVYDF 344
Query: 463 AGRRLGFGP 471
R+GF P
Sbjct: 345 GNNRIGFAP 353
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 142/380 (37%), Gaps = 79/380 (20%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH---CFQQRDPLFDPSKSKTFSKIP 183
+EY V+IG P Q LL DTGS TW K C + C +R FDPS S TF +
Sbjct: 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKETD 75
Query: 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYP 243
N NI Y G N G + D +T+ A +K Y
Sbjct: 76 YN-----------------------LNITYGTGGAN-GIYFRDSITVGGATVKQQTLAYV 111
Query: 244 ----------------FLLGCIRNSSGDKSGASGIMG--LDRSPVSIITKTKIS--YFSY 283
FL G + D + G + V++ + IS FS
Sbjct: 112 DNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSV 171
Query: 284 CLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSY 343
+ + G + G NT+ I+YT ++ + ++D +TG+ + G + S+
Sbjct: 172 YMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSD---AVSF 228
Query: 344 FTKLSTEIDSGAVITRLPSP-----MYAALRSAFRKRM------KKYKRAKGAGDILDTC 392
+ ID+G PS + AAL A + KY+ +K T
Sbjct: 229 DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQDSK-------TT 281
Query: 393 YDLRAYETVVVPKITIHFLGGVDLELDVRGTLV-VASVSQVCLGFAVYPSDTNSFLLGNV 451
+ L ++ +D+ + + L+ V + C+ F V P N F++GN+
Sbjct: 282 FSLVLQKSGSSSDT-------IDVSVPISKMLLPVDKSGETCM-FIVLPDGGNQFIVGNL 333
Query: 452 QQRGHEVHYDVAGRRLGFGP 471
R YD R+GF P
Sbjct: 334 FLRFFVNVYDFGKNRIGFAP 353
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 150/406 (36%), Gaps = 62/406 (15%)
Query: 111 KTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPL 170
+ A P K + S +Y T + P +L++D G W C
Sbjct: 5 RPSALVVPVK-KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD------------ 51
Query: 171 FDPSKSKTFSKIPCNSTTCKKLRGLFPSDD-------NCNSRECH-FNIAYVDGSGNSGF 222
S T+ + C ++ C L G D CN+ C F V + G
Sbjct: 52 -QNYVSSTYRPVRCRTSQCS-LSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGE 109
Query: 223 WATDRMTIQ--EANIKGYFTRYP-FLLGCIRNS--SGDKSGASGIMGLDRSPVSIITKTK 277
A D ++++ + + G P F+ C S SG G+ GL R+ +++ ++
Sbjct: 110 VAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFA 169
Query: 278 ISY-----FSYCLPSPYGSRGYITFGK-------RNTVKTKFIKYTPIITTP-------- 317
++ F+ CL S I FG V K + YTP++T P
Sbjct: 170 SAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST 229
Query: 318 --EQSEYYDITLTGISVGGKKLPFSTSYFTKLS-----TEIDSGAVITRLPSPMYAALRS 370
E S Y I + I + K + +TS + S T+I + T L + +Y A+
Sbjct: 230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTE 289
Query: 371 AFRKRMKKYKRAKGA-----GDILDTCYDLRAYETVVVPKITIHFLG-GVDLELDVRGTL 424
AF K + A G T L VP I + V + ++
Sbjct: 290 AFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSM 349
Query: 425 VVASVSQVCLGFAVYPSDT-NSFLLGNVQQRGHEVHYDVAGRRLGF 469
V + + VCLG S+ S ++G Q + V +D+A R+GF
Sbjct: 350 VYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 150/406 (36%), Gaps = 62/406 (15%)
Query: 111 KTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPL 170
+ A P K + S +Y T + P +L++D G W C
Sbjct: 5 RPSALVVPVK-KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD------------ 51
Query: 171 FDPSKSKTFSKIPCNSTTCKKLRGLFPSDD-------NCNSRECH-FNIAYVDGSGNSGF 222
S T+ + C ++ C L G D CN+ C F V + G
Sbjct: 52 -QNYVSSTYRPVRCRTSQCS-LSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGE 109
Query: 223 WATDRMTIQ--EANIKGYFTRYP-FLLGCIRNS--SGDKSGASGIMGLDRSPVSIITKTK 277
A D ++++ + + G P F+ C S SG G+ GL R+ +++ ++
Sbjct: 110 VAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFA 169
Query: 278 ISY-----FSYCLPSPYGSRGYITFGK-------RNTVKTKFIKYTPIITTP-------- 317
++ F+ CL S I FG V K + YTP++T P
Sbjct: 170 SAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST 229
Query: 318 --EQSEYYDITLTGISVGGKKLPFSTSYFTKLS-----TEIDSGAVITRLPSPMYAALRS 370
E S Y I + I + K + +TS + S T+I + T L + +Y A+
Sbjct: 230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTE 289
Query: 371 AFRKRMKKYKRAKGA-----GDILDTCYDLRAYETVVVPKITIHFLG-GVDLELDVRGTL 424
AF K + A G T L VP I + V + ++
Sbjct: 290 AFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSM 349
Query: 425 VVASVSQVCLGFAVYPSDT-NSFLLGNVQQRGHEVHYDVAGRRLGF 469
V + + VCLG S+ S ++G Q + V +D+A R+GF
Sbjct: 350 VYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 143/365 (39%), Gaps = 77/365 (21%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ---RDPLFDPSKSKTFSKIPCN 185
Y+ ++IG P Q +L DTGS W P ++C Q F+PS+S T+S N
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWV---PSVYCQSQACTSHSRFNPSESSTYST---N 67
Query: 186 STTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFL 245
T F++ Y GS +GF+ D +T+Q +
Sbjct: 68 GQT--------------------FSLQYGSGS-LTGFFGYDTLTVQSIQVPNQ------E 100
Query: 246 LGCIRNSSGDK---SGASGIMGLDRSPVSIITKTKIS------------YFSYCLPSPYG 290
G N G + GIMGL +S+ T FS L + G
Sbjct: 101 FGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQG 160
Query: 291 SR-GYITFGKRN-TVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLS 348
S G + FG + ++ T I + P+ Q Y+ I + +GG+ + + +
Sbjct: 161 SSGGAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGGQASGWCSEGCQAI- 215
Query: 349 TEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITI 408
+D+G + +P +AL A + +Y G L C ++ +P +T
Sbjct: 216 --VDTGTSLLTVPQQYMSALLQATGAQEDEY------GQFLVNCNSIQN-----LPSLTF 262
Query: 409 HFLGGVDLELDVRGTLVVASVSQVCLGFA-VYPSDTNS---FLLGNVQQRGHEVHYDVAG 464
+ GV+ L + ++++ +G Y S N ++LG+V R + YD+
Sbjct: 263 -IINGVEFPLPPS-SYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGN 320
Query: 465 RRLGF 469
R+GF
Sbjct: 321 NRVGF 325
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 155/418 (37%), Gaps = 97/418 (23%)
Query: 106 PDNLKKTKAFT-FPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIH 162
P+ KT +F + S YY + +G P Q +++L+DTGS P +H
Sbjct: 9 PEEPGKTGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH 68
Query: 163 CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSG 221
+ QR S+T + LR G++ + Y G G
Sbjct: 69 RYYQRQL----------------SSTYRDLRKGVY--------------VPYTQGKWE-G 97
Query: 222 FWATDRMTIQE-------ANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV---- 270
TD ++I ANI F + + S GI+GL + +
Sbjct: 98 ELGTDLVSIPHGPNVTVRANIAAITESDKFFI--------NGSNWEGILGLAYAEIARPD 149
Query: 271 --------SIITKTKISYF--------------SYCLPSPYGSRGYITFGKRNTVKTKFI 308
S++ +T + S L S GS I G +++ T +
Sbjct: 150 DSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSL 207
Query: 309 KYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368
YTPI + YY++ + + + G+ L + + +DSG RLP ++ A
Sbjct: 208 WYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA 263
Query: 369 RSAFRKRMKKYKRAKG--AGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV- 425
+ + K G G+ L C+ + P I+++ +G V + R T++
Sbjct: 264 VKSIKAASSTEKFPDGFWLGEQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 426 ---------VASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
VA+ C FA+ S T + ++G V G V +D A +R+GF C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 72
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 73 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 114
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 115 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 166
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 167 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 220
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 280
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 281 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 36 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 82
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 83 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 124
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 125 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 176
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 177 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 230
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 231 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 290
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 291 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 348
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 349 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 50 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 96
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G+ +G TD ++I AN
Sbjct: 97 ---SSTYRDLRKGVY--------------VPYTQGAW-AGELGTDLVSIPHGPNVTVRAN 138
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 139 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 190
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 191 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 244
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 245 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 304
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 305 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 362
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 363 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 72
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 73 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 114
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 115 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 166
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 167 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 220
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A ++ + K G G
Sbjct: 221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLG 280
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 281 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 60
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 61 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 102
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 103 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 154
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 155 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 208
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 209 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 268
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 269 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 326
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 327 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 29 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 75
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 76 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 117
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 118 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 169
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 170 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 223
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 224 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 283
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 284 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 341
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 342 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 16 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 62
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 63 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 104
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 105 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 156
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 157 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 210
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 211 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 270
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 271 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 328
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 329 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGS--MIIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 33 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 79
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 80 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 121
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 122 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 173
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 174 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 227
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 228 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 287
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 288 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 345
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 346 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 60
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 61 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 102
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 103 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 154
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 155 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 208
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 209 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 268
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 269 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 326
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 327 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 29 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 75
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 76 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 117
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 118 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 169
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 170 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 223
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 224 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 283
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 284 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 341
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 342 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 15 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 61
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 62 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 103
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 104 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 155
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 156 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 209
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 210 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 269
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 270 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 327
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 328 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 31 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 77
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 78 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 119
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 120 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 171
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 172 SLQLCGAGFPLNQSEVLASVGGS--MIIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 225
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 226 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 285
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 286 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 343
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 344 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 13 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 59
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 60 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 101
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 102 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 153
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 154 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 207
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 208 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 267
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 268 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 325
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 326 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 31 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 77
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 78 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 119
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 120 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 171
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 172 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 225
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 226 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 285
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 286 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 343
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 344 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 60
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 61 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 102
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 103 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 154
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 155 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 208
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 209 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 268
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 269 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 326
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 327 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 16 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 62
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 63 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 104
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 105 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 156
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 157 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 210
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 211 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 270
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 271 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 328
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 329 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 28 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 74
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 75 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 116
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 117 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 168
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 169 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 222
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 223 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 282
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 283 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 340
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 341 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 57
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 58 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 99
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 100 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 151
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 152 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 205
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 206 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 265
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 266 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 323
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 324 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 60
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 61 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 102
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 103 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 154
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 155 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 208
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 209 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 268
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 269 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 326
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 327 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 60
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 61 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 102
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 103 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 154
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 155 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 208
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 209 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 268
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 269 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 326
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 327 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 50 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 96
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 97 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 138
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 139 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 190
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 191 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 244
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 245 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 304
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 305 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 362
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 363 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 17 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 63
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 64 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 105
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 106 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 157
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 158 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 211
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 212 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 271
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 272 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 329
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 330 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 16 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 62
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 63 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 104
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 105 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 156
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 157 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 210
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 211 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 270
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 271 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 328
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 329 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 72
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 73 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 114
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 115 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 166
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 167 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 220
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 280
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 281 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 72
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 73 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 114
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 115 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 166
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 167 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 220
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 280
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 281 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 65
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 66 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 107
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 108 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 159
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 160 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 213
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 214 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 273
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 274 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 331
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 332 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 27 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 73
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 74 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 115
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 116 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 167
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 168 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 221
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 222 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 281
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 282 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 339
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 340 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 72
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 73 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 114
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 115 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 166
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 167 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 220
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 280
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 281 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 65
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 66 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 107
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 108 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 159
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 160 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 213
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 214 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 273
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 274 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 331
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 332 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 13 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 59
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 60 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPQVTVRAN 101
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + S GI+GL + + S++ +T +
Sbjct: 102 IAAITESDKFFI--------QGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 153
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 154 SLQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 207
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 208 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 267
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 268 EQL-VCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILPQQYLRPVEDVATSQDDCYKF 325
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 326 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 73 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 119
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 120 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 161
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 162 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 213
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 214 SLQLCGAGFPLNQSEVLASVGGS--MIIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 267
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 268 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 327
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 328 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 385
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 386 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 73 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 119
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 120 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 161
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 162 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 213
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 214 SLQLCGAGFPLNQSEVLASVGGS--MIIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 267
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 268 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 327
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 328 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 385
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 386 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 118
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 119 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 160
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 161 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 212
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 213 SLQLCGAGFPLNQSEVLASVGGS--MIIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 266
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 267 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 326
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 327 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 384
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 385 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 10 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 56
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 57 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPQVTVRAN 98
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + S GI+GL + + S++ +T +
Sbjct: 99 IAAITESDKFFI--------QGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 150
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 151 SLQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 204
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 205 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 264
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 265 EQL-VCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILPQQYLRPVEDVATSQDDCYKF 322
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 323 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 57
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 58 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPQVTVRAN 99
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + S GI+GL + + S++ +T +
Sbjct: 100 IAAITESDKFFI--------QGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 151
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 152 SLQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 205
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAG 386
+ + G+ L + + +DSG RLP ++ A + + +K+ G
Sbjct: 206 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 265
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 266 EQL-VCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILPQQYLRPVEDVATSQDDCYKF 323
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 324 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 148/398 (37%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYCQGKWE-GELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 147/398 (36%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S T + +G V G V +D A +R+GF C
Sbjct: 343 AISQSSTGT-CMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 148/385 (38%), Gaps = 84/385 (21%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 16 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 62
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 63 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 104
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKI-SYF 281
I F + + S GI+GL + + S++ +T + + F
Sbjct: 105 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 156
Query: 282 SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFST 341
S L I G +++ T + YTPI + YY++ + + + G+ L
Sbjct: 157 SLQLCG---GGSMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDC 209
Query: 342 SYFTKLSTEIDSGAVITRLPSPMYAALRSAFR--KRMKKYKRAKGAGDILDTCYDLRAYE 399
+ + +DSG RLP ++ A + + +K+ G+ L C+
Sbjct: 210 KEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQL-VCWQAGTTP 268
Query: 400 TVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGFAVYPSDTNSFLLG 449
+ P I+++ +G V + R T++ VA+ C FA+ S T + ++G
Sbjct: 269 WNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT-VMG 326
Query: 450 NVQQRGHEVHYDVAGRRLGFGPGNC 474
V G V +D A +R+GF C
Sbjct: 327 AVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 147/398 (36%), Gaps = 96/398 (24%)
Query: 125 SADEYYTVVAIGKPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
S YY + +G P Q +++L+DTGS P +H + QR
Sbjct: 30 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL------------- 76
Query: 183 PCNSTTCKKLR-GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE-------AN 234
S+T + LR G++ + Y G G TD ++I AN
Sbjct: 77 ---SSTYRDLRKGVY--------------VPYTQGKWE-GELGTDLVSIPHGPNVTVRAN 118
Query: 235 IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKTKISYF- 281
I F + + S GI+GL + + S++ +T +
Sbjct: 119 IAAITESDKFFI--------NGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 170
Query: 282 -------------SYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLT 328
S L S GS I G +++ T + YTPI + YY++ +
Sbjct: 171 SLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIV 224
Query: 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AG 386
+ + G+ L + + +DSG RLP ++ A + + K G G
Sbjct: 225 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLG 284
Query: 387 DILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 436
+ L C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 285 EQL-VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 342
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
A+ S + ++G V G V +D A +R+GF C
Sbjct: 343 AISQSSCGT-VMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 42/244 (17%)
Query: 258 GASGIMGLDRS----PVSIITKTKI-SYFSYCLPSPYGSRGYITFGKRNTVKTKF---IK 309
G++G+ GL S P + + K+ + F CLP+ G G FG +F +
Sbjct: 138 GSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPT--GGPGVAIFGGGPLPWPQFTQSMD 195
Query: 310 YTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVI--TRLP-----S 362
YTP++ +Y I+ I V ++P S + +G V+ TRLP
Sbjct: 196 YTPLVAKGGSPAHY-ISARSIKVENTRVPIS-------ERALATGGVMLSTRLPYVLLRR 247
Query: 363 PMYAALRSAFRKRMKK-------YKRAKGAGDILDTCYDLRAYET----VVVPKITIHFL 411
+Y L AF K + RA + CYD + VP + +
Sbjct: 248 DVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELD 307
Query: 412 GGVDLELDVRGTLVVASVSQVCLGF----AVYPSDTNS--FLLGNVQQRGHEVHYDVAGR 465
GG D + + ++V C+ F V D ++ +LG Q + +D+ +
Sbjct: 308 GGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKK 367
Query: 466 RLGF 469
RLGF
Sbjct: 368 RLGF 371
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 138/383 (36%), Gaps = 107/383 (27%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
+Y V +G P SLL+DTGS TW K++ K +S
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------------KSYVKTSTSSA 54
Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGN-SGFWATDRMTIQEANIKGYFTRYPFLL 246
T K+ ++ Y GSG+ SG TD +T+ G T +
Sbjct: 55 TSDKV-----------------SVTY--GSGSFSGTEYTDTVTL------GSLTIPKQSI 89
Query: 247 GCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLP-------------------- 286
G SG G GI+G+ PV + T + S +P
Sbjct: 90 GVASRDSG-FDGVDGILGV--GPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVS 146
Query: 287 -----SPYGSRGYITFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFS 340
S + G +TFG ++ K T I YTPI +T S Y+ I + + S
Sbjct: 147 FEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQS------IRYGSS 200
Query: 341 TSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYET 400
TS + + +D+G +T + S +A KYK+A GA + D L T
Sbjct: 201 TSILSSTAGIVDTGTTLTLIASDAFA-----------KYKKATGA--VADNNTGLLRLTT 247
Query: 401 VVVPKITIHF--LGGVDLELDVRG--------TLVVASVSQVCLGFAVYPSDTNS---FL 447
+ F +GG EL T + S S V L SD+ F+
Sbjct: 248 AQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFI 307
Query: 448 LG-NVQQRGHEVHYDVAGRRLGF 469
G +R + V YD +RLG
Sbjct: 308 NGLTFLERFYSV-YDTTNKRLGL 329
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
EYY V IG P + +L DTGS W C +C R +DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSRQTKYDPNQSSTY-------- 66
Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKG 237
+ R ++I+Y DGS SG A D + + IKG
Sbjct: 67 -------------QADGRT--WSISYGDGSSASGILAKDNVNLGGLLIKG 101
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 136/368 (36%), Gaps = 75/368 (20%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
EY+ ++IG P Q +++ DTGS W C + F PS+S T+S+ P S
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ-PGQS- 81
Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLG 247
F+I Y GS SG D+++++ + G G
Sbjct: 82 ---------------------FSIQYGTGS-LSGIIGADQVSVEGLTVVGQ------QFG 113
Query: 248 CIRNSSGD---KSGASGIMGLDRSPVSIITKTKI------------SYFS-YCLPSPYGS 291
G + GI+GL +++ T + FS Y +P G
Sbjct: 114 ESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGG 173
Query: 292 RG--YITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLST 349
G I G ++ + + + P+ + Y+ I L I VGG + S
Sbjct: 174 AGSELIFGGYDHSHFSGSLNWVPVT----KQAYWQIALDNIQVGGTVMFCSEG----CQA 225
Query: 350 EIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIH 409
+D+G + PS ++K+ + A GA + D Y + V+P +T
Sbjct: 226 IVDTGTSLITGPS-----------DKIKQLQNAIGAAPV-DGEYAVECANLNVMPDVTFT 273
Query: 410 FLGGVDLELDVRGTLVVASVS--QVC----LGFAVYPSDTNSFLLGNVQQRGHEVHYDVA 463
+ GV L ++ V Q C G ++P ++LG+V R +D
Sbjct: 274 -INGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRG 332
Query: 464 GRRLGFGP 471
R+G P
Sbjct: 333 NNRVGLAP 340
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 141/365 (38%), Gaps = 76/365 (20%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
EYY V++IG P + ++ DTGS W C F P +S T+ +
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVE------ 66
Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLG 247
T K + ++ Y G G G D +++ G + LG
Sbjct: 67 TGKTV-----------------DLTYGTG-GMRGILGQDTVSV------GGGSDPNQELG 102
Query: 248 CIRNSSGDKSGAS---GIMGLDRSPVSIITKTKI------------SYFSYCLPSPYGSR 292
+ G A+ GI+GL ++ + FS+ L S G+
Sbjct: 103 ESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYL-SGGGAN 161
Query: 293 G--YITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTE 350
G + G N+ T I + P+ +Y+ + L GI+V G+ T+
Sbjct: 162 GSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQ-----TAACEGCQAI 212
Query: 351 IDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHF 410
+D+G +++ +P+ SA MK ++ G+++ C +++ +P IT
Sbjct: 213 VDTGT--SKIVAPV-----SALANIMKDIGASENQGEMMGNCASVQS-----LPDITFTI 260
Query: 411 LGGVDLELDVRGTLVVASVSQVC---LGFAVYPSDTNS-FLLGNVQQRGHEVHYDVAGRR 466
G ++ + + + C LG + PS+T+ ++ G+V R + YD +
Sbjct: 261 NG---VKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNK 317
Query: 467 LGFGP 471
+GF P
Sbjct: 318 VGFAP 322
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
EYY V IG P + +L DTGS W C +C + +DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK-YDPNQSSTY-------- 66
Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKG 237
+ R ++I+Y DGS SG A D + + IKG
Sbjct: 67 -------------QADGRT--WSISYGDGSSASGILAKDNVNLGGLLIKG 101
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 48/195 (24%)
Query: 121 IESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFS 180
+ V+ YY IG KQ + + DTGS W C + L+D +KSKT+
Sbjct: 15 LNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYE 74
Query: 181 KIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFT 240
K + + N YV G+ SGF++ D +TI AN+
Sbjct: 75 K---------------------DGTKVEMN--YVSGTV-SGFFSKDIVTI--ANL----- 103
Query: 241 RYPFLLGCIRNSSGDKSGAS-----GIMGLDRSPVSI------------ITKTKISYFSY 283
+P+ + +++G + + GI+GL +SI K + + F++
Sbjct: 104 SFPYKFIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTF 163
Query: 284 CLPSPYGSRGYITFG 298
LP +GY+T G
Sbjct: 164 YLPFDDKHKGYLTIG 178
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 60/279 (21%)
Query: 116 TFPAKI--ESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWT-QCKPCIHCFQQRDPLFD 172
T P K+ E VS Y + + +G KQ +++++DTGS W + Q +DP F
Sbjct: 2 TVPVKLINEQVS---YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNF- 57
Query: 173 PSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECH--FNIAYVDGSGNSGFWATDRMTI 230
CK G + + +S+ + F+I Y DG+ + G W D +
Sbjct: 58 ----------------CKN-EGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTIGF 100
Query: 231 QEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGL-----------DRSPVSIITKTKIS 279
+I T+ F + ++S D+ GI+G+ D PV++ + IS
Sbjct: 101 GGISI----TKQQF--ADVTSTSVDQ----GILGIGYKTHEAEGNYDNVPVTLKNQGIIS 150
Query: 280 YFSYC--LPSPYGSRGYITFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336
+Y L S + G I FG + K + + P+ + E I L + V G+
Sbjct: 151 KNAYSLYLNSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNE----LRIHLNTVKVAGQS 206
Query: 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKR 375
+ + +DSG IT L + + SAF +
Sbjct: 207 IN------ADVDVLLDSGTTITYLQQGVADQVISAFNGQ 239
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
Y + +G Q +++++DTGS W P ++ Q T+S +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNVDCQV----------TYSDQTAD--F 58
Query: 189 CKKLRGLFPSDDNCNSRECH--FNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
CK+ +G + + S++ + F I Y DGS + G D + +IK +L
Sbjct: 59 CKQ-KGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQ------VL 111
Query: 247 GCIRNSSGDKSGASGIMGL-----------DRSPVSIITKTKISYFSYCL--PSPYGSRG 293
+ ++S D+ GI+G+ D PV++ + I+ +Y L SP + G
Sbjct: 112 ADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATG 167
Query: 294 YITFGKRNTVKTKFIKYTPIITTPEQSE-YYDITLTGISVGGKKLPFSTSYFTKLSTEID 352
I FG + K +I P S+ I+L + V GK + + +D
Sbjct: 168 QIIFGGVDNAKYS----GSLIALPVTSDRELRISLGSVEVSGKTINTD-----NVDVLLD 218
Query: 353 SGAVITRLPSPMYAALRSAFRKRMKK 378
SG IT L + + AF ++ +
Sbjct: 219 SGTTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 51/266 (19%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
Y + +G Q +++++DTGS W P ++ Q T+S +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNIDCQV----------TYSDQTAD--F 58
Query: 189 CKKLRGLFPSDDNCNSRECH--FNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
CK+ +G + + S++ + F+I Y DGS + G D + +IK +L
Sbjct: 59 CKQ-KGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQ------VL 111
Query: 247 GCIRNSSGDKSGASGIMGL-----------DRSPVSIITKTKISYFSYCL--PSPYGSRG 293
+ ++S D+ GI+G+ D PV++ + I+ +Y L SP + G
Sbjct: 112 ADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATG 167
Query: 294 YITFGKRNTVKTKFIKYTPIITTPEQSE-YYDITLTGISVGGKKLPFSTSYFTKLSTEID 352
I FG + K +I P S+ I+L + V GK + + +D
Sbjct: 168 QIIFGGVDNAKYS----GSLIALPVTSDRELRISLGSVEVSGKTINTD-----NVDVLLD 218
Query: 353 SGAVITRLPSPMYAALRSAFRKRMKK 378
SG IT L + + AF ++ +
Sbjct: 219 SGTTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 78 KSPSLEETLRR---DQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVA 134
+ PS+ E+L+ D RL ++S +++ N + T + +YY +
Sbjct: 15 RMPSIRESLKERGVDMARLGPEWSQPMKRLTLGNTTSSVILT------NYMDTQYYGEIG 68
Query: 135 IGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 69 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 115
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
Y+ + IG P Q +++ DTGS V W CI NS
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCI-----------------------NSKA 51
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGN-SGFWATDRMTIQEANIK 236
C+ ++ S D+ +E A + G+G+ +GF++ D +TI + +K
Sbjct: 52 CRA-HSMYESSDSSTYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVK 99
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKI 182
+Y+ + IG P Q +++ DTGS W C + FDP KS TF +
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 100/278 (35%), Gaps = 49/278 (17%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNS 186
D Y T V IG P Q ++L DTGS W ++ PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSK----------S 64
Query: 187 TTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
TT K L G S + ++ Y D G T + + FT
Sbjct: 65 TTAKLLSGATWSISYGDGSSSSGDV-YTDTVSVGGLTVTGQAVESAKKVSSSFT------ 117
Query: 247 GCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYF----SYCLPSP-------YGSRGYI 295
+ S G++GL S ++ ++ T+ F L SP Y + G
Sbjct: 118 --------EDSTIDGLLGLAFSTLNTVSPTQXKTFFDNAKASLDSPVFTADLGYHAPGTY 169
Query: 296 TFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSG 354
FG +T T I YT + T + +++ T TG +VG T + D+G
Sbjct: 170 NFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFK-----STSIDGIADTG 221
Query: 355 AVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTC 392
+ LP A + SA+ ++ K + G + C
Sbjct: 222 TTLLYLP----ATVVSAYWAQVSGAKSSSSVGGYVFPC 255
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHC------FQQRDPLFDPSKSKTFSK 181
+Y+ + +G P Q ++L DTGS W P I+C QR FDP KS TF
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQR---FDPRKSSTFQN 68
Query: 182 I 182
+
Sbjct: 69 L 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQ---QRDPLFDPSKSKTFSKI 182
+Y+ + +G P Q ++L DTGS W P I+C + FDP KS TF +
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 100/278 (35%), Gaps = 49/278 (17%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNS 186
D Y T V IG P Q ++L DTGS W ++ PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSK----------S 64
Query: 187 TTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
TT K L G S + ++ Y D G T + + FT
Sbjct: 65 TTAKLLSGATWSISYGDGSSSSGDV-YTDTVSVGGLTVTGQAVESAKKVSSSFT------ 117
Query: 247 GCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYF----SYCLPSP-------YGSRGYI 295
+ S G++GL S ++ ++ T+ F L SP Y + G
Sbjct: 118 --------EDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTY 169
Query: 296 TFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSG 354
FG +T T I YT + T + +++ T TG +VG T + D+G
Sbjct: 170 NFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFK-----STSIDGIADTG 221
Query: 355 AVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTC 392
+ LP A + SA+ ++ K + G + C
Sbjct: 222 TTLLYLP----ATVVSAYWAQVSGAKSSSSVGGYVFPC 255
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 78 KSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGK 137
K L++ L+ + SKY + A +E+ EY+ + IG
Sbjct: 18 KDGKLKDFLKTHKHNPASKY-----------FPEAAALIGDEPLENYLDTEYFGTIGIGT 66
Query: 138 PKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
P Q +++ DTGS W C F+P S TF
Sbjct: 67 PAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 108
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 78 KSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGK 137
K L++ L+ + SKY + A +E+ EY+ + IG
Sbjct: 18 KDGKLKDFLKTHKHNPASKY-----------FPEAAALIGDEPLENYLDTEYFGTIGIGT 66
Query: 138 PKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
P Q +++ DTGS W C F+P S TF
Sbjct: 67 PAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 108
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTF 64
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC--IHCF 164
+YYT + +G P Q ++LDTGS W C + CF
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF 52
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC--IHCF 164
+YYT + +G P Q ++LDTGS W C + CF
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF 52
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC--IHCF 164
+YYT + +G P Q ++LDTGS W C + CF
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF 52
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 117 FPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHC 163
P +++ +YY + IG P Q +++ DTGS W P IHC
Sbjct: 3 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWV---PSIHC 46
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQ--RDPLFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C + LFD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 101/278 (36%), Gaps = 50/278 (17%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNS 186
D Y T V IG P Q ++L DTGS W + ++ PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVXQTIYTPSK----------S 63
Query: 187 TTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
TT K L G S + ++ Y D G T + + FT
Sbjct: 64 TTAKLLSGATWSISYGDGSSSSGDV-YTDTVSVGGLTVTGQAVESAKKVSSSFT------ 116
Query: 247 GCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYF----SYCLPSP-------YGSRGYI 295
+ S G++GL S ++ ++ T+ F L SP Y + G
Sbjct: 117 --------EDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTY 168
Query: 296 TFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSG 354
FG +T T I YT + T + +++ T TG +VG T + D+G
Sbjct: 169 NFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFK-----STSIDGIADTG 220
Query: 355 AVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTC 392
+ LP A + SA+ ++ K + G + C
Sbjct: 221 TTLLYLP----ATVVSAYWAQVSGAKSSSSVGGYVFPC 254
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 120 KIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC--IHCFQQRDPLFDPSKSK 177
+++ V+ +Y +G Q L+ DTGS W K C I C + L+D SKSK
Sbjct: 7 ELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH--LYDSSKSK 64
Query: 178 TFSK------IPCNSTTCKKLRGLFPSD 199
++ K I S T +RG F D
Sbjct: 65 SYEKDGTKVEITYGSGT---VRGFFSKD 89
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 101/278 (36%), Gaps = 50/278 (17%)
Query: 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNS 186
D Y T V IG P Q ++L DTGS W + ++ PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVXQTIYTPSK----------S 63
Query: 187 TTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLL 246
TT K L G S + ++ Y D G T + + FT
Sbjct: 64 TTAKLLSGATWSISYGDGSSSSGDV-YTDTVSVGGLTVTGQAVESAKKVSSSFT------ 116
Query: 247 GCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYF----SYCLPSP-------YGSRGYI 295
+ S G++GL S ++ ++ T+ F L SP Y + G
Sbjct: 117 --------EDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTY 168
Query: 296 TFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSG 354
FG +T T I YT + T + +++ T TG +VG T + D+G
Sbjct: 169 NFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFK-----STSIDGIADTG 220
Query: 355 AVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTC 392
+ LP A + SA+ ++ K + G + C
Sbjct: 221 TTLLYLP----ATVVSAYWAQVSGAKSSSSVGGYVFPC 254
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K + T
Sbjct: 140 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 196
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + YV G+ SGF++ D +T+ ++ P+
Sbjct: 197 VE--------------------MNYVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 228
Query: 249 IRNSSGDK-----SGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G + S GI+GL +SI K + + F++ LP
Sbjct: 229 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 288
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 289 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNIMLE-------KANCIV 337
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 338 DSGTSAITVPT 348
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K
Sbjct: 67 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK------- 119
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + N YV G+ SGF++ D +T+ ++ P+
Sbjct: 120 --------------DGTKVEMN--YVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 155
Query: 249 IRNSSG-----DKSGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G S GI+GL +SI K + + F++ LP
Sbjct: 156 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 215
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 216 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNIMLE-------KANCIV 264
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 265 DSGTSAITVPT 275
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 120 KIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
+++ V+ +Y +G Q L+ DTGS W K C L+D SKSK++
Sbjct: 9 ELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSY 68
Query: 180 SK 181
K
Sbjct: 69 EK 70
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 120 KIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTF 179
+++ V+ +Y +G Q L+ DTGS W K C L+D SKSK++
Sbjct: 55 ELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSY 114
Query: 180 SK 181
K
Sbjct: 115 EK 116
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK------- 68
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + N YV G+ SGF++ D +T+ ++ P+
Sbjct: 69 --------------DGTKVEMN--YVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 104
Query: 249 IRNSSG-----DKSGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G S GI+GL +SI K + + F++ LP
Sbjct: 105 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 164
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 165 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNISL-------EKANCIV 213
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 214 DSGTSAITVPT 224
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK------- 70
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + N YV G+ SGF++ D +T+ ++ P+
Sbjct: 71 --------------DGTKVEMN--YVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 106
Query: 249 IRNSSGDK-----SGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G + S GI+GL +SI K + + F++ LP
Sbjct: 107 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 166
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 167 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNISL-------EKANCIV 215
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 216 DSGTSAITVPT 226
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK------- 70
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + N YV G+ SGF++ D +T+ ++ P+
Sbjct: 71 --------------DGTKVEMN--YVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 106
Query: 249 IRNSSGDK-----SGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G + S GI+GL +SI K + + F++ LP
Sbjct: 107 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 166
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 167 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNIML-------EKANCIV 215
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 216 DSGTSAITVPT 226
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 59/251 (23%)
Query: 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTT 188
+Y +G +Q + +LDTGS W C L+D SKS+T+ K
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK------- 68
Query: 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGC 248
+ + N YV G+ SGF++ D +T+ ++ P+
Sbjct: 69 --------------DGTKVEMN--YVSGTV-SGFFSKDLVTVGNLSL-------PYKFIE 104
Query: 249 IRNSSGDK-----SGASGIMGLDRSPVSI------------ITKTKISYFSYCLPSPYGS 291
+ +++G + S GI+GL +SI K + + F++ LP
Sbjct: 105 VIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 164
Query: 292 RGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351
G++T G ++ +F + Y+ ITL VG L K + +
Sbjct: 165 TGFLTIGG---IEERFYEGPLTYEKLNHDLYWQITLDA-HVGNIML-------EKANCIV 213
Query: 352 DSGAVITRLPS 362
DSG +P+
Sbjct: 214 DSGTSAITVPT 224
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 123 SVSAD-EYYTVVAIGKPKQYVSLLLDTGSDVTW 154
S SAD EY T V+IG P Q + L DTGS W
Sbjct: 10 SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLW 42
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 PAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC 160
P + + +YY + IG P Q ++ DTGS W C
Sbjct: 6 PVVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC 48
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 235 IKGYFTRYPFL-LGCIR-NSSGDKSG--ASGIMGLDRSPVSIITKTK---ISYFSYCLPS 287
+KG TR P + L IR N+ G+ SG + G+ S + ++T+ K I+ F++
Sbjct: 113 LKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVES-LKVMTRPKTERIARFAFDFAK 171
Query: 288 PYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISV 332
Y + K N +K + IIT Q EY DI ++ I V
Sbjct: 172 KYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIV 216
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC---IHCF 164
+Y+ + +G P Q +++ DTGS W C I C+
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY 92
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 120 KIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC--IHCFQQRDPLFDPSKSK 177
+++ V+ +Y IG KQ + DTGS W C I C + L+D S SK
Sbjct: 7 ELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKH--LYDASASK 64
Query: 178 TFSK 181
++ K
Sbjct: 65 SYEK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,822,692
Number of Sequences: 62578
Number of extensions: 569121
Number of successful extensions: 1285
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 171
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)