Query 011922
Match_columns 475
No_of_seqs 346 out of 1778
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.3E-75 2.8E-80 608.4 42.9 387 58-475 23-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.3E-59 2.8E-64 485.5 37.0 335 123-475 41-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 4.1E-58 9E-63 457.5 32.5 293 128-474 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 2.3E-57 5E-62 461.9 32.5 318 135-472 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.7E-55 8E-60 441.3 31.3 298 127-475 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 6E-54 1.3E-58 431.0 31.7 294 123-471 5-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-53 6.8E-58 427.2 31.1 296 124-471 2-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 2.3E-52 4.9E-57 436.9 36.1 300 123-475 115-449 (482)
9 cd05486 Cathespin_E Cathepsin 100.0 7.4E-53 1.6E-57 422.9 29.5 290 129-471 1-316 (316)
10 cd05477 gastricsin Gastricsins 100.0 2.2E-52 4.8E-57 419.8 31.9 294 126-472 1-318 (318)
11 cd05473 beta_secretase_like Be 100.0 3.1E-52 6.6E-57 426.3 30.2 311 127-475 2-348 (364)
12 cd05488 Proteinase_A_fungi Fun 100.0 4.4E-52 9.5E-57 418.0 30.8 294 123-471 5-320 (320)
13 cd05487 renin_like Renin stimu 100.0 1.1E-51 2.3E-56 416.2 31.1 295 124-472 4-326 (326)
14 cd05485 Cathepsin_D_like Cathe 100.0 1.8E-51 4E-56 414.9 30.6 296 123-471 6-329 (329)
15 cd06098 phytepsin Phytepsin, a 100.0 4.2E-51 9.2E-56 410.2 32.1 286 123-471 5-317 (317)
16 PTZ00147 plasmepsin-1; Provisi 100.0 3.6E-50 7.7E-55 417.4 33.0 300 115-473 128-450 (453)
17 cd05475 nucellin_like Nucellin 100.0 3.5E-50 7.5E-55 395.3 28.9 254 127-474 1-273 (273)
18 cd05476 pepsin_A_like_plant Ch 100.0 7E-50 1.5E-54 391.5 28.9 253 128-474 1-265 (265)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.8E-49 6.2E-54 409.9 34.1 300 115-473 127-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 8.6E-48 1.9E-52 379.3 27.0 261 129-471 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.2E-46 4.7E-51 372.1 27.7 269 128-472 2-295 (295)
22 cd05471 pepsin_like Pepsin-lik 100.0 2.6E-44 5.7E-49 354.0 28.1 264 129-471 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.9E-45 8.4E-50 366.1 20.6 294 128-472 1-317 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 6.7E-33 1.4E-37 251.6 14.6 155 129-299 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 9E-29 1.9E-33 224.1 15.9 149 322-471 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.2E-23 9.1E-28 174.4 12.6 105 131-265 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.8 6.1E-05 1.3E-09 61.1 6.8 94 127-267 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.8 0.054 1.2E-06 46.4 8.2 96 125-267 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.0 0.13 2.8E-06 40.7 7.8 89 131-266 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.2 0.19 4E-06 43.2 7.2 103 330-469 21-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 92.1 0.93 2E-05 38.8 8.3 32 125-158 13-44 (124)
32 cd05484 retropepsin_like_LTR_2 91.1 0.23 5.1E-06 39.9 3.4 29 129-159 1-29 (91)
33 TIGR03698 clan_AA_DTGF clan AA 89.3 1.8 3.9E-05 36.1 7.4 24 444-467 84-107 (107)
34 PF11925 DUF3443: Protein of u 87.8 7.4 0.00016 39.4 11.6 50 212-268 83-149 (370)
35 PF13975 gag-asp_proteas: gag- 86.4 1.2 2.6E-05 34.2 4.2 35 125-161 5-39 (72)
36 PF08284 RVP_2: Retroviral asp 85.5 2.9 6.3E-05 36.5 6.7 28 445-472 105-132 (135)
37 PF00077 RVP: Retroviral aspar 83.2 1.6 3.5E-05 35.5 3.9 28 130-159 7-34 (100)
38 TIGR02281 clan_AA_DTGA clan AA 82.3 3 6.4E-05 35.6 5.3 36 320-368 9-44 (121)
39 PF13650 Asp_protease_2: Aspar 81.3 2 4.3E-05 33.7 3.7 29 330-368 3-31 (90)
40 cd05484 retropepsin_like_LTR_2 77.3 3.3 7.2E-05 33.1 3.8 30 329-368 4-33 (91)
41 PF13975 gag-asp_proteas: gag- 74.3 5.2 0.00011 30.6 4.0 29 330-368 13-41 (72)
42 cd05483 retropepsin_like_bacte 72.5 6.7 0.00015 31.0 4.5 30 329-368 6-35 (96)
43 cd05482 HIV_retropepsin_like R 72.3 4.2 9E-05 32.6 3.1 25 132-158 2-26 (87)
44 COG3577 Predicted aspartyl pro 71.9 15 0.00032 34.3 6.9 83 116-237 95-177 (215)
45 cd06095 RP_RTVL_H_like Retrope 68.7 5.7 0.00012 31.5 3.2 26 132-159 2-27 (86)
46 PF12384 Peptidase_A2B: Ty3 tr 67.1 71 0.0015 28.8 9.9 55 305-369 14-68 (177)
47 cd06095 RP_RTVL_H_like Retrope 64.1 8.8 0.00019 30.4 3.5 29 330-368 3-31 (86)
48 PF00077 RVP: Retroviral aspar 57.4 8.6 0.00019 31.1 2.4 27 329-365 9-35 (100)
49 COG5550 Predicted aspartyl pro 50.4 41 0.00089 28.8 5.3 20 349-368 29-49 (125)
50 cd05481 retropepsin_like_LTR_1 46.1 23 0.00049 28.6 3.1 21 349-369 13-33 (93)
51 PF07172 GRP: Glycine rich pro 45.7 12 0.00025 30.6 1.3 20 5-24 8-27 (95)
52 PF12384 Peptidase_A2B: Ty3 tr 43.9 29 0.00063 31.2 3.6 29 130-158 34-62 (177)
53 COG3577 Predicted aspartyl pro 41.9 53 0.0012 30.7 5.1 37 319-368 102-138 (215)
54 PF09668 Asp_protease: Asparty 40.9 33 0.00071 29.5 3.4 30 329-368 28-57 (124)
55 PF07438 DUF1514: Protein of u 32.9 37 0.00079 25.4 2.1 16 1-16 1-16 (66)
56 PF09668 Asp_protease: Asparty 30.8 79 0.0017 27.1 4.2 32 125-158 21-52 (124)
57 KOG0012 DNA damage inducible p 29.8 4.3E+02 0.0093 27.0 9.6 106 328-472 238-346 (380)
58 cd05481 retropepsin_like_LTR_1 26.5 49 0.0011 26.7 2.1 18 140-157 9-26 (93)
59 PF04360 Serglycin: Serglycin 26.0 44 0.00095 29.1 1.7 21 153-173 34-57 (150)
60 PF02160 Peptidase_A3: Caulifl 25.8 2.5E+02 0.0053 26.3 6.8 27 444-471 91-117 (201)
61 PF15240 Pro-rich: Proline-ric 22.4 54 0.0012 29.9 1.7 16 4-19 1-16 (179)
62 TIGR03698 clan_AA_DTGF clan AA 21.9 1.1E+02 0.0023 25.3 3.3 24 131-154 2-29 (107)
63 PF15409 PH_8: Pleckstrin homo 20.5 2.3E+02 0.0049 22.8 4.8 29 347-375 57-88 (89)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.3e-75 Score=608.43 Aligned_cols=387 Identities=32% Similarity=0.586 Sum_probs=323.6
Q ss_pred CceEEEEEcCCCCCCCCCCCCC---CCHHHHHHHHHhHHHhhhcccccccCCCccccCcceeeceeec-CCCCceEEEEE
Q 011922 58 GKASLDVVSKHGPCSTLNQGKS---PSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIE-SVSADEYYTVV 133 (475)
Q Consensus 58 ~~~~l~l~h~~~~~sp~~~~~~---~~~~~~~~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~p~~~~-~~~~~~Y~~~v 133 (475)
++++++|+||++||||+..... +.++++++|+++|++++.+ +.. ...|+..+ ..++++|+++|
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~------------~~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDA------------SPNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-ccc------------cCCccccCcccCCccEEEEE
Confidence 6799999999999999753332 5677889999999988865 321 11233333 45788999999
Q ss_pred EeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC-CCceeeee
Q 011922 134 AIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS-RECHFNIA 212 (475)
Q Consensus 134 ~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~-~~c~y~~~ 212 (475)
.||||+|++.|++||||+++||+|++|..|+.|..+.|||++|+||+.++|+++.|+.+... ..|.. +.|.|.+.
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~----~~c~~~~~c~y~i~ 165 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ----ASCSDENTCTYSYS 165 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC----CCCCCCCCCeeEEE
Confidence 99999999999999999999999999999999889999999999999999999999876532 34753 56999999
Q ss_pred cCCCCcEEEEEEEEEEEEeccc-----ccCccceecEEEEeEEcCCCCCC-CCCceecCCCCCcchhhhcccc---eeEE
Q 011922 213 YVDGSGNSGFWATDRMTIQEAN-----IKGYFTRYPFLLGCIRNSSGDKS-GASGIMGLDRSPVSIITKTKIS---YFSY 283 (475)
Q Consensus 213 Ygdgs~~~G~~~~Dtltl~~~~-----~~~~~~~~~~~FGc~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~---~FS~ 283 (475)
|+||+.+.|++++|+|+|++.. +++ +.|||++.+.+.|. ..+||||||++++|+++|+... +|||
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~------~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSy 239 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPG------IVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSY 239 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCC------EEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEE
Confidence 9999988999999999998743 577 99999999888775 5899999999999999998754 8999
Q ss_pred ecCCCC---CCcceEEecCCCCcCCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccC---CCCEEEcCcCcc
Q 011922 284 CLPSPY---GSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFT---KLSTEIDSGAVI 357 (475)
Q Consensus 284 cL~~~~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~---~~~~iiDSGT~~ 357 (475)
||++.. ...|+|+||+........+.||||+.+. .+.+|+|+|++|+||+++++++...|. .+++||||||++
T Consensus 240 cL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~ 318 (431)
T PLN03146 240 CLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTL 318 (431)
T ss_pred ECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccc
Confidence 997632 2479999998532123458999998643 267999999999999999988776552 368999999999
Q ss_pred cccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEE
Q 011922 358 TRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFA 437 (475)
Q Consensus 358 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~ 437 (475)
|+||+++|++|+++|.+++...+.... ...+++||+... ...+|+|+|+| +|+++.|++++|++....+..|+++.
T Consensus 319 t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~ 394 (431)
T PLN03146 319 TLLPSDFYSELESAVEEAIGGERVSDP-QGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMI 394 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccccCCCC-CCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEe
Confidence 999999999999999999864333333 446789998543 35799999999 58999999999999877778999998
Q ss_pred EcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 438 VYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 438 ~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+. .+.+|||+.|||++||+||++++||||++.+|+
T Consensus 395 ~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 395 PT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred cC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 65 236999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=485.46 Aligned_cols=335 Identities=37% Similarity=0.691 Sum_probs=286.2
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC-CccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI-HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDN 201 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 201 (475)
....++|+++|.||||+|.|+|++||||+++||+|.+|. .|+.+.++.|||++|+||+.+.|.++.|..... ..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-----~~ 115 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-----SC 115 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc-----Cc
Confidence 456789999999999999999999999999999999999 799876677999999999999999999998863 23
Q ss_pred CCCCCceeeeecCCCCcEEEEEEEEEEEEec---ccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCCcchhhh
Q 011922 202 CNSRECHFNIAYVDGSGNSGFWATDRMTIQE---ANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSPVSIITK 275 (475)
Q Consensus 202 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~---~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ 275 (475)
|.+..|.|.+.|+||+.+.|++++|+|+|++ ...++ +.|||+..+.+. . ...+||||||++++|+.+|
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~------~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q 189 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPN------QTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQ 189 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEcccccccccc------EEEEeeecCccccccccccceEeecCCCCccceee
Confidence 3468899999999988899999999999998 55588 999999999763 2 3589999999999999999
Q ss_pred cccc-----eeEEecCCCCC---CcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCC
Q 011922 276 TKIS-----YFSYCLPSPYG---SRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTK 346 (475)
Q Consensus 276 ~~~~-----~FS~cL~~~~~---~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~ 346 (475)
+... +|||||.+... ..|.|+||+.|.. +.+.+.||||+.++. .+|.|.+.+|+||++. .+++..+..
T Consensus 190 ~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~ 266 (398)
T KOG1339|consen 190 LPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCT 266 (398)
T ss_pred cccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEec
Confidence 9876 49999998753 3799999999988 477899999999543 5999999999999977 666555543
Q ss_pred --CCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeE
Q 011922 347 --LSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTL 424 (475)
Q Consensus 347 --~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 424 (475)
+++||||||++|+||+++|++|.++|.+.+. ..... ..+++.||...... ..+|.|+|+|.+|+.+.+++++|+
T Consensus 267 ~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~~~~--~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~ 342 (398)
T KOG1339|consen 267 DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-VVGTD--GEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYL 342 (398)
T ss_pred CCCCEEEECCcceeeccHHHHHHHHHHHHhhee-ccccC--CceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceE
Confidence 7899999999999999999999999998631 01111 35667899776443 569999999966999999999999
Q ss_pred EEeCCCeE-EEEEEEcCCCCCeeeechhhhcceEEEEECC-CCEEEEee--CCCC
Q 011922 425 VVASVSQV-CLGFAVYPSDTNSFLLGNVQQRGHEVHYDVA-GRRLGFGP--GNCS 475 (475)
Q Consensus 425 ~~~~~~~~-Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~~iGFa~--~~C~ 475 (475)
+..+.... |+++.........||||+.|||+++++||.. ++||||++ ..|+
T Consensus 343 ~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 98765544 9988776333368999999999999999999 99999999 7885
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.1e-58 Score=457.47 Aligned_cols=293 Identities=46% Similarity=0.857 Sum_probs=254.0
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCc
Q 011922 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSREC 207 (475)
Q Consensus 128 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 207 (475)
+|+++|.||||+|++.|+|||||+++||+|.+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------~ 34 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------C 34 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------------------------C
Confidence 599999999999999999999999999988765 3
Q ss_pred eeeeecCCCCcEEEEEEEEEEEEecc-cccCccceecEEEEeEEcCCCCCCCCCceecCCCCCcchhhhcccc---eeEE
Q 011922 208 HFNIAYVDGSGNSGFWATDRMTIQEA-NIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKIS---YFSY 283 (475)
Q Consensus 208 ~y~~~Ygdgs~~~G~~~~Dtltl~~~-~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~---~FS~ 283 (475)
.|.+.|++|+.+.|.+++|+|+|++. .+++ +.|||+....+.+...+||||||+..+++++|+... +||+
T Consensus 35 ~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~------~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~ 108 (299)
T cd05472 35 LYQVSYGDGSYTTGDLATDTLTLGSSDVVPG------FAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSY 108 (299)
T ss_pred eeeeEeCCCceEEEEEEEEEEEeCCCCccCC------EEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEE
Confidence 79999999998899999999999987 6788 999999988877778999999999999999998764 9999
Q ss_pred ecCCCC-CCcceEEecCCCCcCCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCH
Q 011922 284 CLPSPY-GSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPS 362 (475)
Q Consensus 284 cL~~~~-~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~ 362 (475)
||++.. ...|+|+||++|++ .+++.|+|++.++..+.+|.|+|++|+||++.+.+++.....+++||||||++++||+
T Consensus 109 ~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 109 CLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred EccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 998754 45799999999987 8899999999866556799999999999999987654333346799999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEE-eCCCeEEEEEEEcCC
Q 011922 363 PMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVV-ASVSQVCLGFAVYPS 441 (475)
Q Consensus 363 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~-~~~~~~Cl~~~~~~~ 441 (475)
++|++|.+++.+.+...+...+ ...++.||+.++.....+|+|+|+|.+|+++.|++++|++. ...+..|+++.+...
T Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~ 266 (299)
T cd05472 188 SAYAALRDAFRAAMAAYPRAPG-FSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSD 266 (299)
T ss_pred HHHHHHHHHHHHHhccCCCCCC-CCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCC
Confidence 9999999999988654443333 34566799887766678999999996689999999999984 345678999887643
Q ss_pred CCCeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011922 442 DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474 (475)
Q Consensus 442 ~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C 474 (475)
..+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 267 ~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 267 DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 456799999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.3e-57 Score=461.91 Aligned_cols=318 Identities=27% Similarity=0.468 Sum_probs=261.7
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCC-------CCCCCCCCC
Q 011922 135 IGKPKQY-VSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFP-------SDDNCNSRE 206 (475)
Q Consensus 135 iGtP~q~-~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~-------~~~~C~~~~ 206 (475)
+|||-.+ +.|++||||+++||||.+| +|+||+.++|+++.|+....+.. +...|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~--------------~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG--------------HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC--------------CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888777 9999999999999999753 58899999999999987654311 113677778
Q ss_pred ceeeee-cCCCCcEEEEEEEEEEEEecc--------cccCccceecEEEEeEEcCC--CCCCCCCceecCCCCCcchhhh
Q 011922 207 CHFNIA-YVDGSGNSGFWATDRMTIQEA--------NIKGYFTRYPFLLGCIRNSS--GDKSGASGIMGLDRSPVSIITK 275 (475)
Q Consensus 207 c~y~~~-Ygdgs~~~G~~~~Dtltl~~~--------~~~~~~~~~~~~FGc~~~~~--g~~~~~~GilGLg~~~~Sl~sQ 275 (475)
|.|... |++|+.+.|++++|+|+|+.. .+++ +.|||++++. +.+..++||||||++++|+++|
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~------~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sq 141 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFN------FVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQ 141 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCC------EEEEcCCcccccCCccccccccccCCCccchHHH
Confidence 999766 889988999999999999753 3467 9999999864 3445689999999999999999
Q ss_pred cccc-----eeEEecCCCCCCcceEEecCCCCcC-------CCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccc
Q 011922 276 TKIS-----YFSYCLPSPYGSRGYITFGKRNTVK-------TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSY 343 (475)
Q Consensus 276 ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~~-------~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~ 343 (475)
+... +|||||++..+..|+|+||+.+..+ .+.++||||+.++..+.+|+|+|++|+||++++.+++..
T Consensus 142 l~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~ 221 (362)
T cd05489 142 LASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTL 221 (362)
T ss_pred hhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchh
Confidence 8763 8999999765558999999987542 378999999987655689999999999999999886554
Q ss_pred cC-----CCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCC----ceeecceEEEEEcC-C
Q 011922 344 FT-----KLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAY----ETVVVPKITIHFLG-G 413 (475)
Q Consensus 344 ~~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~P~i~~~f~g-g 413 (475)
+. .+++||||||++|+||+++|++|+++|+++++.+..........+.||+.... ....+|+|+|+|+| |
T Consensus 222 ~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 222 SANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred ccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCC
Confidence 32 36899999999999999999999999999886544332212234799986532 13579999999976 7
Q ss_pred cEEEecCCCeEEEeCCCeEEEEEEEcCCC-CCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 414 VDLELDVRGTLVVASVSQVCLGFAVYPSD-TNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
++++|++++|+++...+.+|++|...+.. ...||||+.|||++|++||++++|||||+.
T Consensus 302 ~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 VNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999998777899999876432 457999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.7e-55 Score=441.34 Aligned_cols=298 Identities=28% Similarity=0.466 Sum_probs=248.9
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+..+.|||++|+|++.++|++..|... ..|.++.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~-------~~~~~~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC-------LSCLNNK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc-------CcCCCCc
Confidence 589999999999999999999999999999999999988878899999999999999999999531 4577788
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccC-ccceecEEEEeEEcCCCCCC--CCCceecCCCCCcc--------hhhh
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKG-YFTRYPFLLGCIRNSSGDKS--GASGIMGLDRSPVS--------IITK 275 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~-~~~~~~~~FGc~~~~~g~~~--~~~GilGLg~~~~S--------l~sQ 275 (475)
|.|.+.|++|+.+.|.+++|+|+|++...++ ......+.|||+....+.|. ..+||||||+...+ +.+|
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 9999999999889999999999999865531 11223389999998877553 68999999998643 2233
Q ss_pred ccc----ceeEEecCCCCCCcceEEecCCCCcC-C----------CCeEEeeCccCCCCCeeEEEEEeEEEECCEEee-e
Q 011922 276 TKI----SYFSYCLPSPYGSRGYITFGKRNTVK-T----------KFIKYTPIITTPEQSEYYDITLTGISVGGKKLP-F 339 (475)
Q Consensus 276 ~~~----~~FS~cL~~~~~~~G~L~fGg~d~~~-~----------~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~-~ 339 (475)
... .+||+||++. .|+|+||++|+.+ . +++.|+|+.. +.+|.|++++|+|+++... .
T Consensus 155 ~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~ 227 (326)
T cd06096 155 RPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSG 227 (326)
T ss_pred cccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEccccccee
Confidence 222 3999999964 6999999998763 3 7899999987 5799999999999998611 1
Q ss_pred cccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEec
Q 011922 340 STSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELD 419 (475)
Q Consensus 340 ~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 419 (475)
.. ....+||||||++++||+++|++|.+++ |+|+|+|.+|+++.++
T Consensus 228 ~~---~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~~i~ 273 (326)
T cd06096 228 NT---KGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKIDWK 273 (326)
T ss_pred cc---cCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEEEEC
Confidence 11 1257999999999999999999987665 7899999668999999
Q ss_pred CCCeEEEeCCCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 420 VRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 420 ~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
|++|++.......|+++... .+.+|||++|||++|++||++++|||||+++|.
T Consensus 274 p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 274 PSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHHhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999886555556666543 357999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6e-54 Score=430.99 Aligned_cols=294 Identities=23% Similarity=0.435 Sum_probs=245.4
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDD 200 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (475)
+..+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. .+.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~--~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN--HNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc--cCcCCCCCCcceeeCC-----------------
Confidence 3557899999999999999999999999999999999986 654 4899999999998753
Q ss_pred CCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcc------
Q 011922 201 NCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVS------ 271 (475)
Q Consensus 201 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------ 271 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||+..++
T Consensus 66 ------~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~~------~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (317)
T cd05478 66 ------QPLSIQYGTGS-MTGILGYDTVQVGGISDTN------QIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATP 132 (317)
T ss_pred ------cEEEEEECCce-EEEEEeeeEEEECCEEECC------EEEEEEEecCccccccccccceeeeccchhcccCCCC
Confidence 58999999998 7999999999999988899 9999998877644 257999999987543
Q ss_pred hhhhcc----cc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeeccccc
Q 011922 272 IITKTK----IS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYF 344 (475)
Q Consensus 272 l~sQ~~----~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~ 344 (475)
++.|+. .. +||+||.+.....|+|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+|+.+.....
T Consensus 133 ~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~-- 206 (317)
T cd05478 133 VFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG-- 206 (317)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC--
Confidence 444443 32 899999987556799999999887 589999999976 78999999999999998765422
Q ss_pred CCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeE
Q 011922 345 TKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTL 424 (475)
Q Consensus 345 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 424 (475)
..+||||||++++||+++|++|.++++... . ..+ .+..+|. ....+|.|+|+| +|+++.|++++|+
T Consensus 207 --~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---~-~~~--~~~~~C~-----~~~~~P~~~f~f-~g~~~~i~~~~y~ 272 (317)
T cd05478 207 --CQAIVDTGTSLLVGPSSDIANIQSDIGASQ---N-QNG--EMVVNCS-----SISSMPDVVFTI-NGVQYPLPPSAYI 272 (317)
T ss_pred --CEEEECCCchhhhCCHHHHHHHHHHhCCcc---c-cCC--cEEeCCc-----CcccCCcEEEEE-CCEEEEECHHHhe
Confidence 469999999999999999999999886541 1 111 2233564 344789999999 7899999999999
Q ss_pred EEeCCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 425 VVASVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 425 ~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
... ...|+ +|... +..+.||||++|||++|++||++++||||||
T Consensus 273 ~~~--~~~C~~~~~~~-~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 273 LQD--QGSCTSGFQSM-GLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ecC--CCEEeEEEEeC-CCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 765 57898 46554 3346799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-53 Score=427.24 Aligned_cols=296 Identities=24% Similarity=0.426 Sum_probs=241.3
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CccCCCCCCCCCCCCCccccccCCCccccCccCCCCCC
Q 011922 124 VSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSD 199 (475)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 199 (475)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeCC----------------
Confidence 45789999999999999999999999999999999997 37654 799999999997631
Q ss_pred CCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcch----
Q 011922 200 DNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVSI---- 272 (475)
Q Consensus 200 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl---- 272 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .| ...+||||||++.++.
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~~~~~~------~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 129 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGGLQVEG------QLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVT 129 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECCEEEcC------EEEEEEeeccCCcccceeeeEEEecCCccccccCCC
Confidence 69999999997 7999999999999988899 99999988765 23 2679999999976553
Q ss_pred --hhhcc----cc--eeEEecCCCCC--CcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecc
Q 011922 273 --ITKTK----IS--YFSYCLPSPYG--SRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFST 341 (475)
Q Consensus 273 --~sQ~~----~~--~FS~cL~~~~~--~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~ 341 (475)
+.|+. .. +||+||++... ..|+|+|||+|++ +.+++.|+|+.. ..+|.|++++|+||++......
T Consensus 130 ~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~ 205 (325)
T cd05490 130 PVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKG 205 (325)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCC
Confidence 23333 22 89999986432 4799999999887 478999999976 6799999999999987533222
Q ss_pred cccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCC
Q 011922 342 SYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVR 421 (475)
Q Consensus 342 ~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 421 (475)
. ..+||||||+++++|++++++|.+++.+. +...+ .+..+|. ....+|+|+|+| ||+++.|+|+
T Consensus 206 ~----~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~--~~~~~C~-----~~~~~P~i~f~f-gg~~~~l~~~ 269 (325)
T cd05490 206 G----CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG--EYMIDCE-----KIPTLPVISFSL-GGKVYPLTGE 269 (325)
T ss_pred C----CEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC--CEEeccc-----ccccCCCEEEEE-CCEEEEEChH
Confidence 1 46999999999999999999999988642 22222 3445665 334789999999 7899999999
Q ss_pred CeEEEeC--CCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 422 GTLVVAS--VSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 422 ~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
+|++... ....|+ +|.... ...+.||||++|||++|+|||++++|||||+
T Consensus 270 ~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 270 DYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred HeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 9998753 345898 566531 2345799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.3e-52 Score=436.94 Aligned_cols=300 Identities=22% Similarity=0.406 Sum_probs=245.9
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDD 200 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (475)
++.+.+|+++|+||||||++.|+|||||+++||+|..|.. |..+ +.|||++|+||+.+.+...
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~~------------- 179 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGDE------------- 179 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCCc-------------
Confidence 5788999999999999999999999999999999999986 7654 8999999999998532110
Q ss_pred CCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CCC--CCCceecCCCCCcc------
Q 011922 201 NCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DKS--GASGIMGLDRSPVS------ 271 (475)
Q Consensus 201 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~~--~~~GilGLg~~~~S------ 271 (475)
...+.++|++|+ ..|.+++|+|++++..+++ +.|||++...+ .|. .+|||||||++.++
T Consensus 180 -----~~~~~i~YGsGs-~~G~l~~DtV~ig~l~i~~------q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 180 -----SAETYIQYGTGE-CVLALGKDTVKIGGLKVKH------QSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred -----cceEEEEeCCCc-EEEEEEEEEEEECCEEEcc------EEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 124679999997 6899999999999988899 99999998765 343 68999999998652
Q ss_pred -------hhhhcccc--eeEEecCCCCCCcceEEecCCCCcC---CCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeee
Q 011922 272 -------IITKTKIS--YFSYCLPSPYGSRGYITFGKRNTVK---TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPF 339 (475)
Q Consensus 272 -------l~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~~---~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~ 339 (475)
+++|.... +||+||++.....|+|+|||+|+.+ .+++.|+|+.. ..+|.|.+++|+||++.+..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~ 323 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGF 323 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeee
Confidence 33443333 9999998765567999999999874 46899999987 78999999999999988776
Q ss_pred cccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcC--C--cE
Q 011922 340 STSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLG--G--VD 415 (475)
Q Consensus 340 ~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g--~~ 415 (475)
.... ..+|+||||+++++|+++|++|.+++... ..|.+ ...+|+|+|+|.| | .+
T Consensus 324 ~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~-----~~~lP~itf~f~g~~g~~v~ 381 (482)
T PTZ00165 324 CDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSN-----KDSLPRISFVLEDVNGRKIK 381 (482)
T ss_pred cCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------ccccc-----cccCCceEEEECCCCCceEE
Confidence 4322 45999999999999999999998877532 24753 3468999999942 1 38
Q ss_pred EEecCCCeEEEe----CCCeEEE-EEEEcCC---CCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 416 LELDVRGTLVVA----SVSQVCL-GFAVYPS---DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 416 ~~l~~~~~~~~~----~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+.|+|++|+++. ..+..|+ +|...+. .++.||||++|||++|++||.+++|||||+++|+
T Consensus 382 ~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 382 FDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred EEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 999999999873 2456896 7876531 2467999999999999999999999999999984
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.4e-53 Score=422.89 Aligned_cols=290 Identities=24% Similarity=0.434 Sum_probs=239.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
|+++|+||||+|+++|+|||||+++||+|..|.. |..+ +.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSNG----------------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccCC-----------------------
Confidence 8899999999999999999999999999999984 8755 789999999998753
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcc----------hh
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVS----------II 273 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S----------l~ 273 (475)
|.|.+.|++|+ +.|.+++|+|++++..+++ +.|||+....+ .| ...+||||||++.++ |.
T Consensus 56 ~~~~i~Yg~g~-~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~ 128 (316)
T cd05486 56 EAFSIQYGTGS-LTGIIGIDQVTVEGITVQN------QQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMM 128 (316)
T ss_pred cEEEEEeCCcE-EEEEeeecEEEECCEEEcC------EEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHH
Confidence 69999999997 7999999999999988899 99999987765 23 268999999997655 24
Q ss_pred hhcccc--eeEEecCCCC--CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCC
Q 011922 274 TKTKIS--YFSYCLPSPY--GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLS 348 (475)
Q Consensus 274 sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~ 348 (475)
+|.... +||+||.+.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|++++|+||++.+..+.. ..
T Consensus 129 ~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~ 200 (316)
T cd05486 129 AQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQ 200 (316)
T ss_pred hcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CE
Confidence 444333 8999998643 24799999999987 588999999986 78999999999999998754432 46
Q ss_pred EEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEe-
Q 011922 349 TEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVA- 427 (475)
Q Consensus 349 ~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~- 427 (475)
+||||||++++||++++++|.+++.+. ...+ .+..+|. ....+|+|+|+| +|++++|++++|++..
T Consensus 201 aiiDTGTs~~~lP~~~~~~l~~~~~~~-----~~~~--~~~~~C~-----~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~ 267 (316)
T cd05486 201 AIVDTGTSLITGPSGDIKQLQNYIGAT-----ATDG--EYGVDCS-----TLSLMPSVTFTI-NGIPYSLSPQAYTLEDQ 267 (316)
T ss_pred EEECCCcchhhcCHHHHHHHHHHhCCc-----ccCC--cEEEecc-----ccccCCCEEEEE-CCEEEEeCHHHeEEecc
Confidence 999999999999999999998877532 1122 2334564 334699999999 7899999999999874
Q ss_pred -CCCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 428 -SVSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 428 -~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
.....|+ +|.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 268 ~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 268 SDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 3456897 666542 2345799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.2e-52 Score=419.82 Aligned_cols=294 Identities=24% Similarity=0.443 Sum_probs=243.2
Q ss_pred CceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCC
Q 011922 126 ADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCN 203 (475)
Q Consensus 126 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 203 (475)
+..|+++|.||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+||+...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~~-------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTNG-------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceECC--------------------
Confidence 3589999999999999999999999999999999985 7654 799999999998642
Q ss_pred CCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCC------cchhh
Q 011922 204 SRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSP------VSIIT 274 (475)
Q Consensus 204 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~------~Sl~s 274 (475)
|.|++.|++|+ +.|.+++|+|++++..+++ +.|||++...+. + ...+||||||+.. .++++
T Consensus 59 ---~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~i~~------~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 128 (318)
T cd05477 59 ---ETFSLQYGSGS-LTGIFGYDTVTVQGIIITN------QEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQ 128 (318)
T ss_pred ---cEEEEEECCcE-EEEEEEeeEEEECCEEEcC------EEEEEEEecccccccccceeeEeecCcccccccCCCCHHH
Confidence 69999999997 7999999999999988899 999999987653 2 3579999999853 34566
Q ss_pred hcccc------eeEEecCCCC-CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCC
Q 011922 275 KTKIS------YFSYCLPSPY-GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTK 346 (475)
Q Consensus 275 Q~~~~------~FS~cL~~~~-~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~ 346 (475)
|+..+ +||+||++.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|++++|+|+++++.+....
T Consensus 129 ~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~--- 201 (318)
T cd05477 129 GMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG--- 201 (318)
T ss_pred HHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---
Confidence 65433 9999999753 24699999999877 578899999976 689999999999999987643322
Q ss_pred CCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEE
Q 011922 347 LSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVV 426 (475)
Q Consensus 347 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 426 (475)
..+||||||++++||+++|++|++++++.+ . ..+ .+..+|. ....+|+|+|+| +|+++.|++++|++.
T Consensus 202 ~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---~-~~~--~~~~~C~-----~~~~~p~l~~~f-~g~~~~v~~~~y~~~ 269 (318)
T cd05477 202 CQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ---D-QYG--QYVVNCN-----NIQNLPTLTFTI-NGVSFPLPPSAYILQ 269 (318)
T ss_pred ceeeECCCCccEECCHHHHHHHHHHhCCcc---c-cCC--CEEEeCC-----ccccCCcEEEEE-CCEEEEECHHHeEec
Confidence 459999999999999999999999987642 1 112 2334454 445689999999 789999999999987
Q ss_pred eCCCeEEE-EEEEcC----CCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 427 ASVSQVCL-GFAVYP----SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 427 ~~~~~~Cl-~~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
. ...|+ +|.+.. .+...+|||+.|||++|++||++++|||||++
T Consensus 270 ~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 270 N--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred C--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 5 56796 776531 12357999999999999999999999999985
No 11
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.1e-52 Score=426.29 Aligned_cols=311 Identities=24% Similarity=0.351 Sum_probs=242.7
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+|++...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~~----------------------- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDLG----------------------- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccCC-----------------------
Confidence 3799999999999999999999999999999988433 3689999999998763
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCC---CCCceecCCCCCc------------c
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKS---GASGIMGLDRSPV------------S 271 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~---~~~GilGLg~~~~------------S 271 (475)
|.|++.|++|+ +.|.+++|+|+|++. .+ ..+.+.|++.....+.+. ..+||||||++.+ +
T Consensus 55 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~~--~~--~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~ 129 (364)
T cd05473 55 KGVTVPYTQGS-WEGELGTDLVSIPKG--PN--VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDS 129 (364)
T ss_pred ceEEEEECcce-EEEEEEEEEEEECCC--Cc--cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHH
Confidence 69999999997 689999999999863 22 111134567666555432 5799999999865 5
Q ss_pred hhhhcccc-eeEEecCC---------CCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeec
Q 011922 272 IITKTKIS-YFSYCLPS---------PYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFS 340 (475)
Q Consensus 272 l~sQ~~~~-~FS~cL~~---------~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~ 340 (475)
|++|...+ +||++|.. .....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+||++.+.++
T Consensus 130 l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 130 LVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred HHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccc
Confidence 67777655 89997742 1124799999999877 588999999987 679999999999999998876
Q ss_pred ccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCC--ccccccccccCCCceeecceEEEEEcCC-----
Q 011922 341 TSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGA--GDILDTCYDLRAYETVVVPKITIHFLGG----- 413 (475)
Q Consensus 341 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg----- 413 (475)
...+...++||||||++++||+++|++|++++++++.. +..+.. .....+|++........+|+|+|+|+|+
T Consensus 206 ~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 206 CKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred cccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCce
Confidence 54443346999999999999999999999999987532 111110 1223579865432223699999999653
Q ss_pred cEEEecCCCeEEEeC---CCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 414 VDLELDVRGTLVVAS---VSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~---~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
.++.|+|++|+.... .+..|+++.... ..+.||||++|||++|++||++++|||||+.+|+
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 478999999987642 246898654332 2356999999999999999999999999999995
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.4e-52 Score=417.97 Aligned_cols=294 Identities=25% Similarity=0.428 Sum_probs=241.7
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDD 200 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (475)
+..+..|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeCC-----------------
Confidence 3467889999999999999999999999999999999984 8755 799999999987632
Q ss_pred CCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCCcchh----
Q 011922 201 NCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSPVSII---- 273 (475)
Q Consensus 201 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~---- 273 (475)
|.|.+.|++|+ +.|.+++|++++++..+++ +.|||++...+. + ...+||||||++..+..
T Consensus 66 ------~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~------~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 66 ------TEFKIQYGSGS-LEGFVSQDTLSIGDLTIKK------QDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred ------CEEEEEECCce-EEEEEEEeEEEECCEEECC------EEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 68999999997 7999999999999988899 999999887664 2 36799999999876532
Q ss_pred ------hhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeeccccc
Q 011922 274 ------TKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYF 344 (475)
Q Consensus 274 ------sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~ 344 (475)
+|.... +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|++++|+||++.+....
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~--- 205 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN--- 205 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC---
Confidence 333332 899999986556899999999877 478999999986 6799999999999998876442
Q ss_pred CCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeE
Q 011922 345 TKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTL 424 (475)
Q Consensus 345 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 424 (475)
..++|||||++++||++++++|.+++++.. ...+ +|.++|.....+|.|+|+| +|+++.|++++|+
T Consensus 206 --~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----~~~~-------~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~ 271 (320)
T cd05488 206 --TGAAIDTGTSLIALPSDLAEMLNAEIGAKK----SWNG-------QYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYT 271 (320)
T ss_pred --CeEEEcCCcccccCCHHHHHHHHHHhCCcc----ccCC-------cEEeeccccccCCCEEEEE-CCEEEEECHHHhe
Confidence 459999999999999999999988885431 1111 2333333445799999999 7899999999999
Q ss_pred EEeCCCeEEEE-EEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 425 VVASVSQVCLG-FAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 425 ~~~~~~~~Cl~-~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
++. ...|++ +.... ...+.||||++|||++|++||++++|||||+
T Consensus 272 ~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 854 457984 44431 1234799999999999999999999999986
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.1e-51 Score=416.21 Aligned_cols=295 Identities=23% Similarity=0.441 Sum_probs=243.1
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC----ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCC
Q 011922 124 VSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH----CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSD 199 (475)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~----C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 199 (475)
+.+..|+++|.||||+|+++|+|||||+++||+|..|.. |..+ +.|||++|+||+...
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~~---------------- 65 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKENG---------------- 65 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeECC----------------
Confidence 457899999999999999999999999999999888874 6544 799999999998642
Q ss_pred CCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcc-----
Q 011922 200 DNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVS----- 271 (475)
Q Consensus 200 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S----- 271 (475)
|.|++.|++|+ +.|.+++|+|++++..+ + +.|||.....+ .| ...+||||||++..+
T Consensus 66 -------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~-~------~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 130 (326)
T cd05487 66 -------TEFTIHYASGT-VKGFLSQDIVTVGGIPV-T------QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVT 130 (326)
T ss_pred -------EEEEEEeCCce-EEEEEeeeEEEECCEEe-e------EEEEEEEeccCCccceeecceEEecCChhhcccCCC
Confidence 69999999997 89999999999998655 4 67999987643 22 368999999997654
Q ss_pred -----hhhhcccc--eeEEecCCCC--CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecc
Q 011922 272 -----IITKTKIS--YFSYCLPSPY--GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFST 341 (475)
Q Consensus 272 -----l~sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~ 341 (475)
|++|.... +||+||.+.+ ...|+|+|||+|++ +.+++.|+|+.. +.+|.|++++|+||++.+....
T Consensus 131 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~ 206 (326)
T cd05487 131 PVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCED 206 (326)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCC
Confidence 66675544 9999998754 34799999999887 488999999876 6799999999999999875543
Q ss_pred cccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCC
Q 011922 342 SYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVR 421 (475)
Q Consensus 342 ~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 421 (475)
. ..+||||||++++||++++++|++++++. +. . ..+..+|. ....+|+|+|+| +|+.+.|+++
T Consensus 207 ~----~~aiiDSGts~~~lP~~~~~~l~~~~~~~---~~--~--~~y~~~C~-----~~~~~P~i~f~f-gg~~~~v~~~ 269 (326)
T cd05487 207 G----CTAVVDTGASFISGPTSSISKLMEALGAK---ER--L--GDYVVKCN-----EVPTLPDISFHL-GGKEYTLSSS 269 (326)
T ss_pred C----CEEEECCCccchhCcHHHHHHHHHHhCCc---cc--C--CCEEEecc-----ccCCCCCEEEEE-CCEEEEeCHH
Confidence 2 45999999999999999999999988653 11 2 23445665 344689999999 8899999999
Q ss_pred CeEEEeCC--CeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 422 GTLVVASV--SQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 422 ~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
+|+++... +..|+ +|...+ ...+.||||++|||++|++||++++|||||++
T Consensus 270 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 270 DYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99987532 56796 776542 22357999999999999999999999999985
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.8e-51 Score=414.88 Aligned_cols=296 Identities=25% Similarity=0.461 Sum_probs=242.5
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CccCCCCCCCCCCCCCccccccCCCccccCccCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPS 198 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 198 (475)
+..+..|+++|.||||+|++.|++||||+++||+|..|. .|.. .+.|||++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEECC---------------
Confidence 467789999999999999999999999999999999997 3754 3789999999988742
Q ss_pred CCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCCcch---
Q 011922 199 DDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSPVSI--- 272 (475)
Q Consensus 199 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl--- 272 (475)
|.|.+.|++|+ +.|.+++|+++|++..+++ +.|||+.+..+. | ...+||||||++..+.
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 133 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGGVSVKG------QTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGV 133 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECCEEECC------EEEEEEEecCCccccccccceEEEcCCccccccCC
Confidence 69999999998 7999999999999988899 999999887652 3 2579999999987653
Q ss_pred -------hhhcccc--eeEEecCCCCC--CcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeec
Q 011922 273 -------ITKTKIS--YFSYCLPSPYG--SRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFS 340 (475)
Q Consensus 273 -------~sQ~~~~--~FS~cL~~~~~--~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~ 340 (475)
.+|.... .||+||.+..+ ..|+|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++.+...
T Consensus 134 ~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~ 209 (329)
T cd05485 134 VPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSG 209 (329)
T ss_pred CCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCC
Confidence 3444432 99999987543 4699999999877 478999999976 789999999999999876421
Q ss_pred ccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecC
Q 011922 341 TSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDV 420 (475)
Q Consensus 341 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 420 (475)
...+||||||++++||+++|++|.+++.+. ....+ .+..+|. ....+|+|+|+| ||+.+.|++
T Consensus 210 -----~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~~--~~~~~C~-----~~~~~p~i~f~f-gg~~~~i~~ 272 (329)
T cd05485 210 -----GCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIGG--EYMVNCS-----AIPSLPDITFVL-GGKSFSLTG 272 (329)
T ss_pred -----CcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccCC--cEEEecc-----ccccCCcEEEEE-CCEEeEECh
Confidence 135999999999999999999999888653 11111 2334554 445689999999 789999999
Q ss_pred CCeEEEeC--CCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 421 RGTLVVAS--VSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 421 ~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
++|+++.. ...+|+ +|.... ...+.||||++|||++|+|||++++|||||+
T Consensus 273 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 273 KDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99998853 246898 566532 2345799999999999999999999999985
No 15
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.2e-51 Score=410.24 Aligned_cols=286 Identities=23% Similarity=0.453 Sum_probs=236.5
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CccCCCCCCCCCCCCCccccccCCCccccCccCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSD 199 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 199 (475)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKNG---------------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccCC----------------
Confidence 467889999999999999999999999999999999996 49765 799999999988742
Q ss_pred CCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcc-----
Q 011922 200 DNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVS----- 271 (475)
Q Consensus 200 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S----- 271 (475)
+.+.+.|++|+ +.|.+++|+|++++..+++ +.|||++...+ .| ...+||||||+...+
T Consensus 67 -------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~v~~------~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 67 -------TSASIQYGTGS-ISGFFSQDSVTVGDLVVKN------QVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred -------CEEEEEcCCce-EEEEEEeeEEEECCEEECC------EEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 47899999997 7999999999999988899 99999987654 23 268999999997654
Q ss_pred -----hhhhcccc--eeEEecCCCC--CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecc
Q 011922 272 -----IITKTKIS--YFSYCLPSPY--GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFST 341 (475)
Q Consensus 272 -----l~sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~ 341 (475)
|++|.... +||+||.+.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~ 208 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA 208 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC
Confidence 34454333 8999998653 24799999999987 588999999976 6799999999999999876543
Q ss_pred cccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCC
Q 011922 342 SYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVR 421 (475)
Q Consensus 342 ~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 421 (475)
.. ..+||||||++++||+++++++. ...+|++. ..+|+|+|+| +|+.++|+++
T Consensus 209 ~~---~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~~-----~~~P~i~f~f-~g~~~~l~~~ 261 (317)
T cd06098 209 GG---CAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNSL-----SSMPNVSFTI-GGKTFELTPE 261 (317)
T ss_pred CC---cEEEEecCCcceeCCHHHHHhhh------------------ccCCcccc-----ccCCcEEEEE-CCEEEEEChH
Confidence 32 35999999999999998776653 12357632 3689999999 7899999999
Q ss_pred CeEEEeC--CCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 422 GTLVVAS--VSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 422 ~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
+|+++.. ....|+ +|.... .....||||++|||++|+|||++++|||||+
T Consensus 262 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 262 QYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9998753 245897 565432 2245799999999999999999999999995
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.6e-50 Score=417.41 Aligned_cols=300 Identities=23% Similarity=0.380 Sum_probs=241.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+. +..+.+|+++|+||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+||+...
T Consensus 128 ~~v~L~--n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~~--------- 194 (453)
T PTZ00147 128 DNVELK--DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKDG--------- 194 (453)
T ss_pred Ceeecc--ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEECC---------
Confidence 456665 3567899999999999999999999999999999999985 7654 799999999998752
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC---C--CCCCceecCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD---K--SGASGIMGLDR 267 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~--~~~~GilGLg~ 267 (475)
|.|.+.|++|+ +.|.+++|+|++++..++ ..|+|+.+..+. + ...+||||||+
T Consensus 195 --------------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~v~-------~qF~~~~~~~~f~~~~~~~~~DGILGLG~ 252 (453)
T PTZ00147 195 --------------TKVEMNYVSGT-VSGFFSKDLVTIGNLSVP-------YKFIEVTDTNGFEPFYTESDFDGIFGLGW 252 (453)
T ss_pred --------------CEEEEEeCCCC-EEEEEEEEEEEECCEEEE-------EEEEEEEeccCcccccccccccceecccC
Confidence 58999999997 899999999999987654 568888876542 2 26899999999
Q ss_pred CCcch----------hhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECC
Q 011922 268 SPVSI----------ITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGG 334 (475)
Q Consensus 268 ~~~Sl----------~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg 334 (475)
+.++. ..|.... +||+||++.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ +.+|+
T Consensus 253 ~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~ 327 (453)
T PTZ00147 253 KDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGN 327 (453)
T ss_pred CccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECC
Confidence 87642 3343333 899999876556899999999988 489999999975 679999998 57776
Q ss_pred EEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCc
Q 011922 335 KKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 335 ~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
... ....+||||||+++++|+++++++.+++.+.. .+. . ..+..+|+. ..+|+++|+| +|.
T Consensus 328 ~~~-------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~--~~y~~~C~~------~~lP~~~f~f-~g~ 388 (453)
T PTZ00147 328 VSS-------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-L--PLYVTTCNN------TKLPTLEFRS-PNK 388 (453)
T ss_pred Eec-------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-C--CeEEEeCCC------CCCCeEEEEE-CCE
Confidence 431 12469999999999999999999999886431 111 1 234567863 4689999999 689
Q ss_pred EEEecCCCeEEEe--CCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 415 DLELDVRGTLVVA--SVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 415 ~~~l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
.+.|+|++|+.+. .....|+ +|.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 389 ~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 389 VYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999999999763 2345797 687764344679999999999999999999999999975
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-50 Score=395.31 Aligned_cols=254 Identities=28% Similarity=0.537 Sum_probs=214.5
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCC
Q 011922 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK-PCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSR 205 (475)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~-~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 205 (475)
++|+++|.||||+|++.|++||||+++||+|+ +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999994 67555
Q ss_pred CceeeeecCCCCcEEEEEEEEEEEEecc----cccCccceecEEEEeEEcCCCCC----CCCCceecCCCCCcchhhhcc
Q 011922 206 ECHFNIAYVDGSGNSGFWATDRMTIQEA----NIKGYFTRYPFLLGCIRNSSGDK----SGASGIMGLDRSPVSIITKTK 277 (475)
Q Consensus 206 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~----~~~~~~~~~~~~FGc~~~~~g~~----~~~~GilGLg~~~~Sl~sQ~~ 277 (475)
.|.|.+.|+||+.+.|.+++|+|+|+.. .+++ +.|||+..+.+.+ ...+||||||+++.++++|+.
T Consensus 39 ~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~------~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPR------IAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCC------EEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 1689999998888999999999999753 3467 9999998876532 268999999999999999987
Q ss_pred cc-----eeEEecCCCCCCcceEEecCCCCcCCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEc
Q 011922 278 IS-----YFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEID 352 (475)
Q Consensus 278 ~~-----~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiD 352 (475)
.+ +||+||++. ..|.|+||+. ..+.+++.|+|+..++. ..+|.|++.+|+||++.+.. ...++|||
T Consensus 113 ~~~~i~~~Fs~~l~~~--~~g~l~~G~~-~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~-----~~~~~ivD 183 (273)
T cd05475 113 SQGIIKNVIGHCLSSN--GGGFLFFGDD-LVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG-----KGLEVVFD 183 (273)
T ss_pred hcCCcCceEEEEccCC--CCeEEEECCC-CCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC-----CCceEEEE
Confidence 54 799999873 4699999953 22467899999988542 57999999999999985321 12569999
Q ss_pred CcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCC---cEEEecCCCeEEEeCC
Q 011922 353 SGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGG---VDLELDVRGTLVVASV 429 (475)
Q Consensus 353 SGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~ 429 (475)
|||++++||+++| +|+|+|+|.++ ++++|++++|++....
T Consensus 184 TGTt~t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~ 226 (273)
T cd05475 184 SGSSYTYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK 226 (273)
T ss_pred CCCceEEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC
Confidence 9999999999877 57899999543 7999999999988666
Q ss_pred CeEEEEEEEcCC--CCCeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011922 430 SQVCLGFAVYPS--DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474 (475)
Q Consensus 430 ~~~Cl~~~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C 474 (475)
+..|+++..... ..+.||||+.|||++|++||++++|||||+++|
T Consensus 227 ~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 227 GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 778998886532 235799999999999999999999999999999
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=7e-50 Score=391.52 Aligned_cols=253 Identities=41% Similarity=0.766 Sum_probs=223.9
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCc
Q 011922 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSREC 207 (475)
Q Consensus 128 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 207 (475)
+|+++|.||||+|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~----------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C----------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C-----------------------------------------------
Confidence 699999999999999999999999999987 1
Q ss_pred eeeeecCCCCcEEEEEEEEEEEEecc--cccCccceecEEEEeEEcCCCC-CCCCCceecCCCCCcchhhhcccc--eeE
Q 011922 208 HFNIAYVDGSGNSGFWATDRMTIQEA--NIKGYFTRYPFLLGCIRNSSGD-KSGASGIMGLDRSPVSIITKTKIS--YFS 282 (475)
Q Consensus 208 ~y~~~Ygdgs~~~G~~~~Dtltl~~~--~~~~~~~~~~~~FGc~~~~~g~-~~~~~GilGLg~~~~Sl~sQ~~~~--~FS 282 (475)
.|.+.|+||+.+.|.+++|+|+|++. .+++ +.|||+....+. ....+||||||+...|+++|+..+ +||
T Consensus 32 ~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~------~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs 105 (265)
T cd05476 32 SYEYSYGDGSSTSGVLATETFTFGDSSVSVPN------VAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFS 105 (265)
T ss_pred ceEeEeCCCceeeeeEEEEEEEecCCCCccCC------EEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeE
Confidence 68889999988999999999999998 6788 999999998762 237899999999999999999888 999
Q ss_pred EecCCC--CCCcceEEecCCCCcCCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeeccccc-----CCCCEEEcCcC
Q 011922 283 YCLPSP--YGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYF-----TKLSTEIDSGA 355 (475)
Q Consensus 283 ~cL~~~--~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~-----~~~~~iiDSGT 355 (475)
+||++. ....|+|+||++|+++.+++.|+|++.++....+|.|+|++|+|+++.+.+++..+ ....+||||||
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 999975 34589999999987778899999999865446899999999999999987543322 12579999999
Q ss_pred cccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEE
Q 011922 356 VITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLG 435 (475)
Q Consensus 356 ~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~ 435 (475)
++++||+++| |+|+|+|.+|.++.+++++|++....+..|++
T Consensus 186 s~~~lp~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~ 227 (265)
T cd05476 186 TLTYLPDPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLA 227 (265)
T ss_pred cceEcCcccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEE
Confidence 9999999988 78999996589999999999998777789999
Q ss_pred EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011922 436 FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474 (475)
Q Consensus 436 ~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C 474 (475)
+.... ..+.+|||++|||++|++||.+++|||||+++|
T Consensus 228 ~~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 228 ILSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 98763 456899999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.8e-49 Score=409.90 Aligned_cols=300 Identities=23% Similarity=0.366 Sum_probs=239.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+|++...
T Consensus 127 ~~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~~--------- 193 (450)
T PTZ00013 127 DVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKDG--------- 193 (450)
T ss_pred Cceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccCC---------
Confidence 4566653 467799999999999999999999999999999999984 8755 799999999998753
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC---CC--CCCCceecCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG---DK--SGASGIMGLDR 267 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g---~~--~~~~GilGLg~ 267 (475)
|.|.+.|++|+ +.|.+++|+|++++..++ ..|+++.+..+ .+ ..++||||||+
T Consensus 194 --------------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~-------~~f~~~~~~~~~~~~~~~~~~dGIlGLg~ 251 (450)
T PTZ00013 194 --------------TKVDITYGSGT-VKGFFSKDLVTLGHLSMP-------YKFIEVTDTDDLEPIYSSSEFDGILGLGW 251 (450)
T ss_pred --------------cEEEEEECCce-EEEEEEEEEEEECCEEEc-------cEEEEEEeccccccceecccccceecccC
Confidence 58999999997 899999999999987654 57888876542 12 26899999999
Q ss_pred CCcc------hhh----hcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECC
Q 011922 268 SPVS------IIT----KTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGG 334 (475)
Q Consensus 268 ~~~S------l~s----Q~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg 334 (475)
+.++ ++. |.... +||+||++.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.++ +.+|.
T Consensus 252 ~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~ 326 (450)
T PTZ00013 252 KDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGK 326 (450)
T ss_pred CccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECc
Confidence 8654 233 43333 899999976556899999999987 489999999975 679999998 67765
Q ss_pred EEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCc
Q 011922 335 KKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 335 ~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
... ....+||||||+++++|+++++++.+++.... .+ .. ..+..+|+. ..+|+|+|+| +|.
T Consensus 327 ~~~-------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~--~~y~~~C~~------~~lP~i~F~~-~g~ 387 (450)
T PTZ00013 327 QTM-------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FL--PFYVTTCDN------KEMPTLEFKS-ANN 387 (450)
T ss_pred eec-------cccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CC--CeEEeecCC------CCCCeEEEEE-CCE
Confidence 432 12469999999999999999999988876431 11 11 234567852 3689999999 789
Q ss_pred EEEecCCCeEEEe--CCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 415 DLELDVRGTLVVA--SVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 415 ~~~l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+++|+|++|+.+. ..+..|+ ++.+.+.+.+.||||++|||++|+|||++++|||||+++
T Consensus 388 ~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 388 TYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9999999998753 2346897 777654345689999999999999999999999999975
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.6e-48 Score=379.34 Aligned_cols=261 Identities=29% Similarity=0.447 Sum_probs=215.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCce
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECH 208 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~ 208 (475)
|+++|+||||+|++.|+|||||+++||+|+.|..|..+..+.|||++|+|++..+ .|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~----------------------~~~ 58 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP----------------------GAT 58 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC----------------------CcE
Confidence 7899999999999999999999999999999998876667889999999988652 159
Q ss_pred eeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcch-------------
Q 011922 209 FNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVSI------------- 272 (475)
Q Consensus 209 y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl------------- 272 (475)
|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+ .+ ...+||||||+...+.
T Consensus 59 ~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l 132 (278)
T cd06097 59 WSISYGDGSSASGIVYTDTVSIGGVEVPN------QAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENA 132 (278)
T ss_pred EEEEeCCCCeEEEEEEEEEEEECCEEECC------eEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHH
Confidence 99999999889999999999999988899 99999998765 22 3789999999976542
Q ss_pred hhhcccceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEE
Q 011922 273 ITKTKISYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEI 351 (475)
Q Consensus 273 ~sQ~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~ii 351 (475)
.+|+....||+||.+ ...|+|+|||+|++ +.+++.|+|+..+ ..+|.|++++|+||++...... ...+||
T Consensus 133 ~~~~~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~----~~~~ii 203 (278)
T cd06097 133 LSSLDAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRS----GFSAIA 203 (278)
T ss_pred HHhccCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecC----CceEEe
Confidence 233332399999986 34799999999987 5889999999863 5789999999999998543222 246999
Q ss_pred cCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCCCe
Q 011922 352 DSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQ 431 (475)
Q Consensus 352 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~ 431 (475)
||||+++++|++++++|.+++.+. .+....+ .+..+| ... +|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~--~~~~~~~--~~~~~C-----~~~--~P~i~f~~--------------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGA--YYDSEYG--GWVFPC-----DTT--LPDLSFAV--------------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCC--cccCCCC--EEEEEC-----CCC--CCCEEEEE---------------------
Confidence 999999999999999999888432 1222222 233445 332 89999999
Q ss_pred EEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 432 VCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 432 ~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
.||||++|||++|+|||++++|||||+
T Consensus 252 -------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.2e-46 Score=372.12 Aligned_cols=269 Identities=26% Similarity=0.418 Sum_probs=224.8
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCc
Q 011922 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSREC 207 (475)
Q Consensus 128 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 207 (475)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999997
Q ss_pred eeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCCCCCc-----------chhhhc
Q 011922 208 HFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV-----------SIITKT 276 (475)
Q Consensus 208 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~-----------Sl~sQ~ 276 (475)
.|++.|++|+.+.|.+++|+|+|++..+++ +.|||+++.. ..+||||||+.+. +++.|+
T Consensus 31 ~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~------~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 31 DFSISYGDGTSASGTWGTDTVSIGGATVKN------LQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred eeEEEeccCCcEEEEEEEEEEEECCeEecc------eEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 257789998889999999999999988889 9999999843 5799999999876 577777
Q ss_pred ccc------eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCC--CCeeEEEEEeEEEECCEEeeecccccCCC
Q 011922 277 KIS------YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPE--QSEYYDITLTGISVGGKKLPFSTSYFTKL 347 (475)
Q Consensus 277 ~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~--~~~~y~v~l~gI~vgg~~l~~~~~~~~~~ 347 (475)
..+ .||+||.+.....|.|+|||+|.. +.+++.|+|+..++. ...+|.|++++|+|+++.+..+.. -...
T Consensus 101 ~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~-~~~~ 179 (295)
T cd05474 101 KKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL-SKNL 179 (295)
T ss_pred HHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc-CCCc
Confidence 543 899999986556899999999876 478899999998542 247899999999999988754221 1226
Q ss_pred CEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEe
Q 011922 348 STEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVA 427 (475)
Q Consensus 348 ~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 427 (475)
.+||||||++++||+++|++|.+++.+.+ .... ..+..+|+.. .. |+|+|+| +|+++.|++++|+++.
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~---~~~~--~~~~~~C~~~-----~~-p~i~f~f-~g~~~~i~~~~~~~~~ 247 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATY---DSDE--GLYVVDCDAK-----DD-GSLTFNF-GGATISVPLSDLVLPA 247 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEE---cCCC--cEEEEeCCCC-----CC-CEEEEEE-CCeEEEEEHHHhEecc
Confidence 79999999999999999999999998753 2222 2456678643 23 9999999 6799999999999876
Q ss_pred C----CCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 428 S----VSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 428 ~----~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
. ....|+ +|.+... +.+|||++|||++|++||.+++|||||++
T Consensus 248 ~~~~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 248 STDDGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccCCCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 4 367785 8887632 68999999999999999999999999985
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.6e-44 Score=353.97 Aligned_cols=264 Identities=35% Similarity=0.611 Sum_probs=220.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCC--CCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPL--FDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++.. ..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~-----------------------~~ 57 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD-----------------------TG 57 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec-----------------------CC
Confidence 789999999999999999999999999999999865554444 67776665543 23
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC--CCCCCceecCCCCC------cchhhhccc
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD--KSGASGIMGLDRSP------VSIITKTKI 278 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~--~~~~~GilGLg~~~------~Sl~sQ~~~ 278 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. ....+||||||+.. .+++.|+..
T Consensus 58 ~~~~~~Y~~g~-~~g~~~~D~v~~~~~~~~~------~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 58 CTFSITYGDGS-VTGGLGTDTVTIGGLTIPN------QTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred CEEEEEECCCe-EEEEEEEeEEEECCEEEec------eEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 79999999986 7999999999999988888 999999998752 23789999999988 778888775
Q ss_pred c------eeEEecCCC--CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCE
Q 011922 279 S------YFSYCLPSP--YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLST 349 (475)
Q Consensus 279 ~------~FS~cL~~~--~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~ 349 (475)
+ +||+||.+. ....|.|+||++|.. +.+++.|+|++.. ...+|.|.+++|.|+++...... ....+
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~---~~~~~ 205 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSS---GGGGA 205 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecC---CCcEE
Confidence 3 999999985 246899999999887 4889999999984 36789999999999997511111 12569
Q ss_pred EEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCC
Q 011922 350 EIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASV 429 (475)
Q Consensus 350 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 429 (475)
+|||||++++||+++|++|.+++.+.+.. ...|+...+.....+|+|+|+|
T Consensus 206 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~p~i~f~f------------------- 256 (283)
T cd05471 206 IVDSGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSPCDTLPDITFTF------------------- 256 (283)
T ss_pred EEecCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCcccCcCCCEEEEE-------------------
Confidence 99999999999999999999999886431 2234444455566899999999
Q ss_pred CeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 430 SQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 430 ~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
.+|||++|||++|++||.++++||||+
T Consensus 257 ---------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ---------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ---------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999986
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.9e-45 Score=366.13 Aligned_cols=294 Identities=29% Similarity=0.491 Sum_probs=240.5
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCc-cCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHC-FQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 128 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C-~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
+|+++|.||||+|+++|++||||+.+||+++.|..| .......|+|++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 699999999999999999999999999999999875 33345899999999988763
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC---CCCCCceecCCCCC-------cchhhhc
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD---KSGASGIMGLDRSP-------VSIITKT 276 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~~~~~GilGLg~~~-------~Sl~sQ~ 276 (475)
+.+.+.|++|+ +.|.+++|+|+|++..+++ +.||++....+. ....+||||||+.. .+++.|+
T Consensus 58 ~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~------~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l 130 (317)
T PF00026_consen 58 KPFSISYGDGS-VSGNLVSDTVSIGGLTIPN------QTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQL 130 (317)
T ss_dssp EEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHH
T ss_pred eeeeeeccCcc-cccccccceEeeeeccccc------cceeccccccccccccccccccccccCCcccccccCCcceecc
Confidence 58999999998 9999999999999988888 999999996542 34789999999743 3455555
Q ss_pred ccc------eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCE
Q 011922 277 KIS------YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLST 349 (475)
Q Consensus 277 ~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~ 349 (475)
..+ +||++|.+.....|.|+|||+|.+ +.++++|+|+.. ..+|.|.+++|+++++....... ..+
T Consensus 131 ~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~~~ 202 (317)
T PF00026_consen 131 VQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----QQA 202 (317)
T ss_dssp HHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----EEE
T ss_pred hhhccccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----eee
Confidence 433 899999987656799999999888 488999999995 78899999999999993322221 239
Q ss_pred EEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCC
Q 011922 350 EIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASV 429 (475)
Q Consensus 350 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 429 (475)
+||||+++++||.+++++|.+++..... . + .+..+| .....+|.++|+| ++.++.|++++|+.....
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~---~--~--~~~~~c-----~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYS---D--G--VYSVPC-----NSTDSLPDLTFTF-GGVTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEE---C--S--EEEEET-----TGGGGSEEEEEEE-TTEEEEEEHHHHEEEESS
T ss_pred ecccccccccccchhhHHHHhhhccccc---c--e--eEEEec-----ccccccceEEEee-CCEEEEecchHhcccccc
Confidence 9999999999999999999999987522 1 2 233345 4445689999999 789999999999988643
Q ss_pred C--eEEE-EEEEc--CCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 430 S--QVCL-GFAVY--PSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 430 ~--~~Cl-~~~~~--~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
. ..|+ +|.+. ....+.+|||.+|||++|++||.+++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 3 3896 66652 235678999999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=6.7e-33 Score=251.63 Aligned_cols=155 Identities=44% Similarity=0.861 Sum_probs=127.0
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCce
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECH 208 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~ 208 (475)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...... .....|.+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCccc
Confidence 89999999999999999999999999999 34899999999999999999999987642 001223357899
Q ss_pred eeeecCCCCcEEEEEEEEEEEEeccc-----ccCccceecEEEEeEEcCCCCCCCCCceecCCCCCcchhhhc---ccce
Q 011922 209 FNIAYVDGSGNSGFWATDRMTIQEAN-----IKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKT---KISY 280 (475)
Q Consensus 209 y~~~Ygdgs~~~G~~~~Dtltl~~~~-----~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQ~---~~~~ 280 (475)
|.+.|+|++.+.|.+++|+|+++... +.+ +.|||++...+.+...+||||||++++||++|+ ...+
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~------~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~ 144 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPD------FIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNK 144 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEE------EEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeee------EEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCe
Confidence 99999999999999999999999864 255 999999999998889999999999999999999 4449
Q ss_pred eEEecCC-CCCCcceEEecC
Q 011922 281 FSYCLPS-PYGSRGYITFGK 299 (475)
Q Consensus 281 FS~cL~~-~~~~~G~L~fGg 299 (475)
|||||++ .....|+|+||+
T Consensus 145 FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 145 FSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEB-S-SSSSEEEEEECS
T ss_pred EEEECCCCCCCCCEEEEeCc
Confidence 9999999 445689999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=9e-29 Score=224.13 Aligned_cols=149 Identities=40% Similarity=0.642 Sum_probs=122.7
Q ss_pred eEEEEEeEEEECCEEeeeccccc----CCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccc--c-CCCCccccccccc
Q 011922 322 YYDITLTGISVGGKKLPFSTSYF----TKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYK--R-AKGAGDILDTCYD 394 (475)
Q Consensus 322 ~y~v~l~gI~vgg~~l~~~~~~~----~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~~C~~ 394 (475)
+|+|+|++|+||++++++++..| ..+++||||||++|+||+++|++|+++|.+++.... + ... ...++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~-~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPP-FSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE----TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhccccccccc-CCCCCceee
Confidence 69999999999999999999987 358999999999999999999999999999998643 2 233 578899999
Q ss_pred cCC----CceeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEEc-CCCCCeeeechhhhcceEEEEECCCCEEEE
Q 011922 395 LRA----YETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVY-PSDTNSFLLGNVQQRGHEVHYDVAGRRLGF 469 (475)
Q Consensus 395 ~~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~~iGF 469 (475)
.+. .....+|+|+|||.||++++|++++|++...++.+|++|.+. ....+..|||+.+|++++++||++++||||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF 159 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGF 159 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEE
Confidence 987 356789999999998999999999999998888999999988 344678999999999999999999999999
Q ss_pred ee
Q 011922 470 GP 471 (475)
Q Consensus 470 a~ 471 (475)
+|
T Consensus 160 ~~ 161 (161)
T PF14541_consen 160 AP 161 (161)
T ss_dssp EE
T ss_pred eC
Confidence 87
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=4.2e-23 Score=174.38 Aligned_cols=105 Identities=35% Similarity=0.598 Sum_probs=92.8
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCC-CCCCCCccccccCCCccccCccCCCCCCCCCCCCCcee
Q 011922 131 TVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLF-DPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHF 209 (475)
Q Consensus 131 ~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y 209 (475)
++|.||||+|++.|+|||||+++||+|+.|..|..+..+.| +|++|++++... |.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~-----------------------~~~ 57 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG-----------------------CTF 57 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC-----------------------cEE
Confidence 47999999999999999999999999999988765555677 999999987642 699
Q ss_pred eeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecC
Q 011922 210 NIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGL 265 (475)
Q Consensus 210 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGL 265 (475)
.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+.+ ...+|||||
T Consensus 58 ~~~Y~~g~-~~g~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 58 SITYGTGS-LSGGLSTDTVSIGDIEVVG------QAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEeCCCe-EEEEEEEEEEEECCEEECC------EEEEEEEecCCccccccccccccCC
Confidence 99999996 6899999999999988889 9999999998753 378999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.81 E-value=6.1e-05 Score=61.15 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=66.0
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCC
Q 011922 127 DEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206 (475)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 206 (475)
+.|++++.|+ .+++.+++|||++.+|+.-.-...+. . .... .
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~-----~-------~~~~------------------------~ 42 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG-----L-------PLTL------------------------G 42 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC-----C-------CccC------------------------C
Confidence 3689999999 89999999999999999664221111 0 0000 0
Q ss_pred ceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCCC
Q 011922 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDR 267 (475)
Q Consensus 207 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 267 (475)
....+...+|.........+.+++++..+++ +.+........ ..+||||+..
T Consensus 43 ~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~------~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANGRVRAARVRLDSLQIGGITLRN------VPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCCCccceEEEcceEEECCcEEec------cEEEEeCCccc---CCceEeChHH
Confidence 2556677778766666778999999987777 77766655432 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.76 E-value=0.054 Score=46.39 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=61.9
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS 204 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 204 (475)
.++.|++++.|. ++++.+++|||++.+-+..+--... -.++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~~-~-------------------------- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNRL-G-------------------------- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCcccC-C--------------------------
Confidence 568999999998 7899999999999998754321100 0111100 0
Q ss_pred CCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCCC
Q 011922 205 RECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDR 267 (475)
Q Consensus 205 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 267 (475)
-...+.=..|......+.-|.+.+++....| +++....... ..+|+||+.+
T Consensus 53 --~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~n------v~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 53 --YTVTVSTANGQIKAARVTLDRVAIGGIVVND------VDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred --ceEEEEeCCCcEEEEEEEeCEEEECCEEEeC------cEEEEeCCCc----CCceEcCHHH
Confidence 0223333456544455678999999988888 8876664321 1379999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.03 E-value=0.13 Score=40.72 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=53.4
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCceee
Q 011922 131 TVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFN 210 (475)
Q Consensus 131 ~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y~ 210 (475)
+++.|+ .+++.+++|||++.+.+.-.-..... ..+.... ....
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~-----------------------------~~~~ 43 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPKS-----------------------------VPIS 43 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc-----------------------------eeEE
Confidence 467777 78999999999998877543221110 0000000 1233
Q ss_pred eecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCC
Q 011922 211 IAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLD 266 (475)
Q Consensus 211 ~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg 266 (475)
+.-.+|........-+.+++++....+ +.|-.... -...+||||+-
T Consensus 44 ~~~~~g~~~~~~~~~~~i~ig~~~~~~------~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 44 VSGAGGSVTVYRGRVDSITIGGITLKN------VPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EEeCCCCEEEEEEEEEEEEECCEEEEe------EEEEEECC----CCCCEEEeCCc
Confidence 333445444555666789999877777 77665551 22579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.18 E-value=0.19 Score=43.22 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=57.9
Q ss_pred EEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccc-cCCCCccccccccccCCCceeecceEEE
Q 011922 330 ISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYK-RAKGAGDILDTCYDLRAYETVVVPKITI 408 (475)
Q Consensus 330 I~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 408 (475)
+.|+|+.+. ++||||++.+.++++..+++--..... ..+. ...+ .... .+ ........+
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~-~~~~~~~~g-~g~~-~~-------~g~~~~~~l 80 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLID-KRFQGIAKG-VGTQ-KI-------LGRIHLAQV 80 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccC-cceEEEEec-CCCc-EE-------EeEEEEEEE
Confidence 557777642 899999999999999987743211100 0000 0111 0110 01 112234455
Q ss_pred EEcCCcEEEecCCCeEEEeCCCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEE
Q 011922 409 HFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGF 469 (475)
Q Consensus 409 ~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGF 469 (475)
.+ +|..+.+ + +.+.+. +....|||..||+.+-.+.|+.+++|-|
T Consensus 81 ~i-~~~~~~~---~-----------~~Vl~~--~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 81 KI-GNLFLPC---S-----------FTVLED--DDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EE-CCEEeee---E-----------EEEECC--CCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 55 4443221 1 122222 2335799999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.09 E-value=0.93 Score=38.84 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
....+++++.|+ ++++.+++|||++.+++.-+
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 456789999999 89999999999999998654
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.15 E-value=0.23 Score=39.92 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
|++++.|+ ++++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 899999999999999997653
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.35 E-value=1.8 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred CeeeechhhhcceEEEEECCCCEE
Q 011922 444 NSFLLGNVQQRGHEVHYDVAGRRL 467 (475)
Q Consensus 444 ~~~IlG~~fl~~~~vvfD~~~~~i 467 (475)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999988753
No 34
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=87.78 E-value=7.4 Score=39.45 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=32.4
Q ss_pred ecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcC-----------CCC------CCCCCceecCCCC
Q 011922 212 AYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNS-----------SGD------KSGASGIMGLDRS 268 (475)
Q Consensus 212 ~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~-----------~g~------~~~~~GilGLg~~ 268 (475)
.|++|. +=|-+.+-+|+|++....+ +++-...+. .+. ...+.||||+|.-
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~~------iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETASS------IPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeeccc------cCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 567764 6789999999999985544 333333221 111 1268999999974
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.44 E-value=1.2 Score=34.23 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI 161 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~ 161 (475)
..+.+++.+.|| ++.+.+++|||++...|..+-+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 79999999999999998766543
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=85.48 E-value=2.9 Score=36.45 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.7
Q ss_pred eeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 445 SFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 445 ~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
..|||-.+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999764
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.19 E-value=1.6 Score=35.45 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=23.7
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011922 130 YTVVAIGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 130 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
+++|.|. .+++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4677787 789999999999999997654
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.25 E-value=3 Score=35.62 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.5
Q ss_pred CeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 320 SEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 320 ~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
.++|++. +.|+|+++. ++||||++.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667665 567887532 99999999999999988775
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.28 E-value=2 Score=33.73 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=24.2
Q ss_pred EEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 330 ISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 330 I~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
++|+|+++. ++||||++.+.+.++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 567777542 99999999999999998876
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.27 E-value=3.3 Score=33.09 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=25.6
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
.+.|+|+++. +.||||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 88999999999999999876
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.28 E-value=5.2 Score=30.61 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=24.6
Q ss_pred EEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 330 ISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 330 I~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
+.++|+.+. ++||||.+..+++++..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 567776643 89999999999999999887
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.52 E-value=6.7 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=23.9
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
.+.|+++.+. ++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 3667776643 89999999999999887665
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=72.25 E-value=4.2 Score=32.64 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 132 VVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 132 ~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
.+.|+ .|.+.+++|||+|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999998754
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=71.93 E-value=15 Score=34.32 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCC
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGL 195 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 195 (475)
++.+.. ..+|.|.++..|- +|++..++|||-+.+-+.-+.-.. --||.+...
T Consensus 95 ~v~Lak--~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l~------------------ 146 (215)
T COG3577 95 EVSLAK--SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSLD------------------ 146 (215)
T ss_pred EEEEEe--cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCccccC------------------
Confidence 444443 3789999999998 999999999999888876543211 123333211
Q ss_pred CCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccC
Q 011922 196 FPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKG 237 (475)
Q Consensus 196 ~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~ 237 (475)
-++.+.-.+|....-.+--|.|.|++....|
T Consensus 147 -----------y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~n 177 (215)
T COG3577 147 -----------YTITVSTANGRARAAPVTLDRVQIGGIRVKN 177 (215)
T ss_pred -----------CceEEEccCCccccceEEeeeEEEccEEEcC
Confidence 1555666778765666788999999887766
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.69 E-value=5.7 Score=31.46 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011922 132 VVAIGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 132 ~v~iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
.+.|. ++++.+++|||++.+-+.-..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 789999999999999986543
No 46
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=67.10 E-value=71 Score=28.82 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=32.6
Q ss_pred CCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHH
Q 011922 305 TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALR 369 (475)
Q Consensus 305 ~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~ 369 (475)
...+...|++.+-..+..=.+-...+.+.|..+. ++||||++..+...+..+.|.
T Consensus 14 ~~~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~----------vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 14 KSSITTCPIVHYIAIPEVGKTAIVQLNCKGTPIK----------VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred cceeeeeeeEEEeeccccCcEEEEEEeecCcEEE----------EEEeCCCccceeehhhHHhhC
Confidence 3455666766632222222222233445555543 999999999999888877763
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.07 E-value=8.8 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.2
Q ss_pred EEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 330 ISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 330 I~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567777643 89999999999999998775
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=57.38 E-value=8.6 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHH
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMY 365 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y 365 (475)
.|.++|+.+. ++||||+..+.++++.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3667777543 99999999999998644
No 49
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.44 E-value=41 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.3
Q ss_pred EEEcCcCc-ccccCHHHHHHH
Q 011922 349 TEIDSGAV-ITRLPSPMYAAL 368 (475)
Q Consensus 349 ~iiDSGT~-~t~Lp~~~y~~l 368 (475)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999999886
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.13 E-value=23 Score=28.61 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEcCcCcccccCHHHHHHHH
Q 011922 349 TEIDSGAVITRLPSPMYAALR 369 (475)
Q Consensus 349 ~iiDSGT~~t~Lp~~~y~~l~ 369 (475)
+.+|||++...+|...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 789999999999999888764
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.70 E-value=12 Score=30.61 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhccCCCccc
Q 011922 5 LKAFVLFIWLPCSSNNGASA 24 (475)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (475)
|+.+||+.+||+|+..++++
T Consensus 8 lL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHhhhhhHH
Confidence 33344445566655554433
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=43.93 E-value=29 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=23.1
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 130 YTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 130 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
...+.++.-..++.++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34555666689999999999999998664
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=41.92 E-value=53 Score=30.70 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 319 QSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 319 ~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
.+++|.++ ..|+|+.+. .++|||.+.+.|+++..+.+
T Consensus 102 ~~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 36777776 679999865 88999999999998876654
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.89 E-value=33 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHH
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAAL 368 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 368 (475)
.++++|+.+. ++||||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 3678998764 99999999999999998874
No 55
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=32.87 E-value=37 Score=25.39 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHhh
Q 011922 1 MWILLKAFVLFIWLPC 16 (475)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (475)
|||.+-..|.+++|.+
T Consensus 1 MWIiiSIvLai~lLI~ 16 (66)
T PF07438_consen 1 MWIIISIVLAIALLIS 16 (66)
T ss_pred ChhhHHHHHHHHHHHH
Confidence 9998887777666555
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.78 E-value=79 Score=27.12 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=22.2
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
.....|+++.|+ .+++.+++|||...+-+.-+
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 445788999999 89999999999998887543
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=29.78 E-value=4.3e+02 Score=26.99 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=59.6
Q ss_pred eEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHH--HHHHHHHHhhccccCCCCccccccccccCCCceeecce
Q 011922 328 TGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAA--LRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPK 405 (475)
Q Consensus 328 ~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~--l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 405 (475)
.++.++|+.+. +.||||+-.+.+...-.+. |...+.....+..+.-+ ......| +-.
T Consensus 238 iN~~ing~~VK----------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg-~~ki~g~----------Ih~ 296 (380)
T KOG0012|consen 238 INCEINGVPVK----------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVG-TEKILGR----------IHQ 296 (380)
T ss_pred EEEEECCEEEE----------EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCC-cccccce----------eEE
Confidence 34678888764 8899999999888776655 33333333211111000 0011111 111
Q ss_pred EEEEEcCCcEEEecCCCeEEEeCCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 406 ITIHFLGGVDLELDVRGTLVVASVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 406 i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
+.+.+ .- .| ..|- .++.. ..-...||.-.||.+--.-|++++++-|+..
T Consensus 297 ~~lki--------~~-~~-------l~c~ftV~d~--~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 297 AQLKI--------ED-LY-------LPCSFTVLDR--RDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred EEEEe--------cc-Ee-------eccceEEecC--CCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 22222 11 11 2463 44432 2234689999999999999999999887654
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=26.47 E-value=49 Score=26.66 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.9
Q ss_pred ceEEEEEEcCCCceeEeC
Q 011922 140 QYVSLLLDTGSDVTWTQC 157 (475)
Q Consensus 140 q~~~vi~DTGS~~~Wv~c 157 (475)
+++.+.+|||++..-++-
T Consensus 9 ~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 9 QSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eeEEEEEecCCEEEeccH
Confidence 899999999999887754
No 59
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=25.97 E-value=44 Score=29.12 Aligned_cols=21 Identities=38% Similarity=1.134 Sum_probs=17.6
Q ss_pred eeEeCCCCC---CccCCCCCCCCC
Q 011922 153 TWTQCKPCI---HCFQQRDPLFDP 173 (475)
Q Consensus 153 ~Wv~c~~C~---~C~~~~~~~fdp 173 (475)
-||.|+|=. +|..++.|+||=
T Consensus 34 qWVrC~PDsnsANCieEKGP~FdL 57 (150)
T PF04360_consen 34 QWVRCNPDSNSANCIEEKGPLFDL 57 (150)
T ss_pred eEEecCCCCCCCccccccCCceec
Confidence 599999864 499999999984
No 60
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=25.80 E-value=2.5e+02 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.7
Q ss_pred CeeeechhhhcceEEEEECCCCEEEEee
Q 011922 444 NSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 444 ~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
-..|||+.|+|.|+=....+ .+|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 45899999999887666654 4677654
No 61
>PF15240 Pro-rich: Proline-rich
Probab=22.36 E-value=54 Score=29.92 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHhhccC
Q 011922 4 LLKAFVLFIWLPCSSN 19 (475)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (475)
||+++|-+.||.||++
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 3444443434444344
No 62
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.85 E-value=1.1e+02 Score=25.34 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=18.2
Q ss_pred EEEEeCCCC----ceEEEEEEcCCCcee
Q 011922 131 TVVAIGKPK----QYVSLLLDTGSDVTW 154 (475)
Q Consensus 131 ~~v~iGtP~----q~~~vi~DTGS~~~W 154 (475)
++|.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 577787772 378999999988653
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.47 E-value=2.3e+02 Score=22.82 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCEEEcCcCccccc---CHHHHHHHHHHHHHH
Q 011922 347 LSTEIDSGAVITRL---PSPMYAALRSAFRKR 375 (475)
Q Consensus 347 ~~~iiDSGT~~t~L---p~~~y~~l~~~~~~~ 375 (475)
....||||..+-.| .++.++..+++|+.+
T Consensus 57 ~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 57 RRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 34889999998776 578889999888763
Done!