Query 011922
Match_columns 475
No_of_seqs 346 out of 1778
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 1E-63 3.5E-68 517.0 30.4 340 112-472 6-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 1.4E-59 4.7E-64 485.5 30.8 336 114-475 9-395 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 1.1E-56 3.9E-61 458.3 30.1 303 115-473 46-370 (370)
4 1t6e_X Xylanase inhibitor; two 100.0 1.8E-56 6.1E-61 458.9 30.0 329 115-473 3-373 (381)
5 1tzs_A Cathepsin E; hydrolase, 100.0 6.8E-56 2.3E-60 449.8 29.4 306 115-475 13-344 (351)
6 1mpp_A Pepsin; hydrolase(acid 100.0 7.4E-56 2.5E-60 451.2 29.7 311 114-475 7-357 (361)
7 3fv3_A SAPP1P-secreted asparti 100.0 1.7E-55 5.8E-60 444.7 29.0 300 115-475 3-331 (339)
8 1j71_A Candidapepsin, aspartic 100.0 9.5E-56 3.2E-60 445.8 26.9 297 115-475 3-326 (334)
9 1dpj_A Proteinase A; proteinas 100.0 2.8E-55 9.4E-60 441.5 30.2 302 115-473 3-329 (329)
10 3c9x_A Trichoderma reesei aspa 100.0 6.8E-56 2.3E-60 445.9 25.6 299 123-472 11-329 (329)
11 1oew_A Endothiapepsin; hydrola 100.0 1.2E-55 4E-60 444.2 26.0 297 124-472 12-329 (329)
12 2apr_A Rhizopuspepsin; hydrola 100.0 1.4E-55 4.8E-60 442.9 26.3 302 116-473 5-324 (325)
13 2qzx_A Candidapepsin-5; aspart 100.0 1.7E-55 5.8E-60 445.3 26.8 300 115-475 3-333 (342)
14 3cms_A Chymosin B; hydrolase, 100.0 1.4E-55 4.7E-60 442.6 25.2 300 116-473 5-323 (323)
15 1am5_A Pepsin, acid proteinase 100.0 4.3E-55 1.5E-59 439.1 27.8 300 116-473 3-324 (324)
16 2x0b_A Renin; hydrolase-hormon 100.0 2.3E-55 7.7E-60 450.0 24.6 303 115-473 51-383 (383)
17 4aa9_A Chymosin; hydrolase, as 100.0 4.4E-55 1.5E-59 438.2 24.2 295 123-473 7-320 (320)
18 1htr_B Gastricsin; aspartyl pr 100.0 7.5E-55 2.6E-59 438.3 25.8 302 116-473 4-329 (329)
19 2ewy_A Beta-secretase 2; BACE2 100.0 1.3E-54 4.4E-59 445.4 27.7 311 125-475 11-357 (383)
20 3k1w_A Renin; protease, altern 100.0 6.7E-55 2.3E-59 440.6 23.3 305 113-473 6-340 (341)
21 3pvk_A Candidapepsin-2; hydrol 100.0 1.9E-54 6.6E-59 437.4 26.0 301 115-475 3-333 (342)
22 2qp8_A Beta-secretase 1; BACE1 100.0 2.9E-54 9.8E-59 444.6 26.0 310 125-475 19-369 (395)
23 1miq_A Plasmepsin; aspartic pr 100.0 3.5E-54 1.2E-58 440.6 25.6 299 115-473 52-374 (375)
24 1qdm_A Prophytepsin; aspartic 100.0 1.6E-53 5.5E-58 447.8 30.1 317 115-473 42-478 (478)
25 3vf3_A Beta-secretase 1; struc 100.0 1.5E-53 5.1E-58 440.3 27.7 313 125-475 26-376 (402)
26 2bju_A Plasmepsin II; aspartic 100.0 1.6E-53 5.4E-58 443.8 24.5 300 115-473 128-450 (453)
27 1ibq_A Aspergillopepsin; aspar 100.0 3.1E-53 1.1E-57 425.8 25.8 302 116-473 4-325 (325)
28 3lpj_A Beta-secretase 1; alzhe 100.0 2.2E-53 7.6E-58 445.7 25.7 312 125-475 72-422 (455)
29 1izd_A Aspartic proteinase; su 100.0 2.7E-53 9.2E-58 425.9 23.6 294 124-473 12-323 (323)
30 1bxo_A Protein (penicillopepsi 100.0 2.5E-53 8.6E-58 426.2 21.7 293 124-473 12-323 (323)
31 1yg9_A Aspartic protease BLA G 100.0 5.2E-53 1.8E-57 425.1 22.8 302 115-473 7-329 (330)
32 3qvc_A Histo-aspartic protease 100.0 2.9E-52 9.8E-57 434.7 25.2 299 115-473 127-449 (451)
33 1wkr_A Polyporopepsin; hydrola 100.0 6.3E-52 2.1E-56 418.9 26.7 297 115-475 3-335 (340)
34 1b5f_A Protein (cardosin A); h 100.0 7E-42 2.4E-46 328.5 18.7 218 116-374 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 3.1E-35 1E-39 282.5 19.1 210 244-473 8-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 1.1E-22 3.6E-27 166.9 9.5 89 116-232 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.6 1.2E-15 4.2E-20 122.3 7.7 73 400-473 10-87 (87)
38 2i1a_A DNA damage-inducible pr 90.7 0.54 1.8E-05 40.2 6.8 26 445-470 109-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 89.8 0.73 2.5E-05 39.7 6.9 109 322-471 24-134 (148)
40 1fmb_A EIAV protease; hydrolas 83.2 1.1 3.7E-05 36.1 4.0 26 129-156 9-34 (104)
41 2hs1_A HIV-1 protease; ultra-h 82.6 1.4 4.9E-05 35.0 4.4 29 129-159 9-37 (99)
42 3ec0_A Protease; HIV-2, inhibi 78.7 2.3 8E-05 33.8 4.4 28 130-159 10-37 (99)
43 2i1a_A DNA damage-inducible pr 77.2 2.1 7.1E-05 36.4 4.1 31 125-157 23-53 (148)
44 2hah_A Protease, retropepsin; 73.4 2.9 9.9E-05 34.3 3.8 27 129-158 15-41 (116)
45 3liy_A Protease; hydrolase, hy 72.6 3.1 0.00011 33.8 3.7 31 130-160 12-45 (116)
46 3s8i_A Protein DDI1 homolog 1; 68.2 4.4 0.00015 34.7 4.0 32 125-158 21-52 (148)
47 3sqf_A Protease; folded monome 67.4 5.2 0.00018 32.6 4.0 29 130-160 11-39 (114)
48 3slz_A GAG-Pro-POL polyprotein 53.7 11 0.00038 31.5 3.8 29 128-158 22-50 (132)
49 2rsp_A RSV protease; hydrolase 53.4 10 0.00034 31.4 3.4 23 135-159 27-49 (124)
50 3ka2_A [L-Ala51;Gly51']HIV-1 p 50.5 12 0.00042 33.6 3.8 27 129-157 9-35 (203)
51 1lya_A Cathepsin D; lysosomal 46.5 11 0.00037 29.5 2.5 34 320-364 12-45 (97)
52 1bxo_A Protein (penicillopepsi 41.6 27 0.00093 33.4 5.0 43 306-365 4-46 (323)
53 1izd_A Aspartic proteinase; su 37.2 36 0.0012 32.5 5.1 43 306-365 4-46 (323)
54 1ibq_A Aspergillopepsin; aspar 32.5 35 0.0012 32.6 4.2 41 308-365 5-45 (325)
55 1mpp_A Pepsin; hydrolase(acid 29.5 56 0.0019 31.6 5.1 46 305-363 4-49 (361)
56 3ka2_A [L-Ala51;Gly51']HIV-1 p 29.3 44 0.0015 30.0 3.8 28 129-158 113-140 (203)
57 3cms_A Chymosin B; hydrolase, 25.3 36 0.0012 32.5 2.8 44 308-364 3-46 (323)
58 3vla_A EDGP; extracellular, in 24.2 54 0.0019 32.6 4.0 46 306-363 6-51 (413)
59 1oew_A Endothiapepsin; hydrola 23.4 74 0.0025 30.3 4.6 34 320-364 14-47 (329)
60 3c9x_A Trichoderma reesei aspa 22.0 81 0.0028 30.0 4.6 35 320-365 14-48 (329)
61 1fmb_A EIAV protease; hydrolas 21.9 82 0.0028 24.9 3.8 31 327-367 10-40 (104)
62 2apr_A Rhizopuspepsin; hydrola 20.6 89 0.0031 29.6 4.6 34 320-364 14-47 (325)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1e-63 Score=516.97 Aligned_cols=340 Identities=24% Similarity=0.408 Sum_probs=285.6
Q ss_pred CcceeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccC
Q 011922 112 TKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKK 191 (475)
Q Consensus 112 ~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (475)
.+.+.+|++.+ ..+++|+++|.||||+|++.|+|||||+++||+|++| .+|+||+.++|.++.|..
T Consensus 6 ~~~~~~pv~~d-~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~ 71 (413)
T 3vla_A 6 PSALVVPVKKD-ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL 71 (413)
T ss_dssp CSEEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred CccEEEEeeec-CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence 34678899875 6789999999999999999999999999999999976 379999999999999987
Q ss_pred ccCCCC------CCCCCCCCCceeeeec-CCCCcEEEEEEEEEEEEec---------ccccCccceecEEEEeEEcC--C
Q 011922 192 LRGLFP------SDDNCNSRECHFNIAY-VDGSGNSGFWATDRMTIQE---------ANIKGYFTRYPFLLGCIRNS--S 253 (475)
Q Consensus 192 ~~~~~~------~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~---------~~~~~~~~~~~~~FGc~~~~--~ 253 (475)
...+.. ...+|.++.|.|.+.| +||+.+.|++++|+|+|++ ..+++ +.|||++.+ .
T Consensus 72 ~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~------~~FGc~~~~~~~ 145 (413)
T 3vla_A 72 SGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR------FIFSCAPTSLLQ 145 (413)
T ss_dssp TTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEE------EEEEEECGGGGT
T ss_pred cccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCC------EEEECccccccc
Confidence 654210 0135666789999999 5888899999999999984 23466 999999986 4
Q ss_pred CCCCCCCceecCCCCCcchhhhcccc-----eeEEecCCCCCCcceEEecCCCCc------CCCC-eEEeeCccCCCC--
Q 011922 254 GDKSGASGIMGLDRSPVSIITKTKIS-----YFSYCLPSPYGSRGYITFGKRNTV------KTKF-IKYTPIITTPEQ-- 319 (475)
Q Consensus 254 g~~~~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~------~~~~-~~~tpl~~~~~~-- 319 (475)
+.+..++||||||++++|+++|+..+ +|||||++.....|.|+||+.|.. +.+. ++||||+.++..
T Consensus 146 g~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~ 225 (413)
T 3vla_A 146 NLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTS 225 (413)
T ss_dssp TSCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCS
T ss_pred CcccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccc
Confidence 56668999999999999999998763 899999986556899999998753 3567 999999986532
Q ss_pred --------CeeEEEEEeEEEECCEEeeecccccC-----CCCEEEcCcCcccccCHHHHHHHHHHHHHHhh--ccccCCC
Q 011922 320 --------SEYYDITLTGISVGGKKLPFSTSYFT-----KLSTEIDSGAVITRLPSPMYAALRSAFRKRMK--KYKRAKG 384 (475)
Q Consensus 320 --------~~~y~v~l~gI~vgg~~l~~~~~~~~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~ 384 (475)
..+|+|+|++|+||++.+.+++..|. .+++||||||++|+||+++|++|+++|.+++. .+++..+
T Consensus 226 ~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~ 305 (413)
T 3vla_A 226 ATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS 305 (413)
T ss_dssp SSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred ccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC
Confidence 27999999999999999998876663 36899999999999999999999999999875 3454444
Q ss_pred CccccccccccCCCce----eecceEEEEEcC-CcEEEecCCCeEEEeCCCeEEEEEEEcCCC-CCeeeechhhhcceEE
Q 011922 385 AGDILDTCYDLRAYET----VVVPKITIHFLG-GVDLELDVRGTLVVASVSQVCLGFAVYPSD-TNSFLLGNVQQRGHEV 458 (475)
Q Consensus 385 ~~~~~~~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~v 458 (475)
...++.||+.++... ..+|+|+|+|.| +++++|++++|+++.+.+..|++|...... .+.||||++|||++|+
T Consensus 306 -~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~v 384 (413)
T 3vla_A 306 -VAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLV 384 (413)
T ss_dssp -CTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEE
T ss_pred -CCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEE
Confidence 456789998875432 579999999965 489999999999987667899999876432 3579999999999999
Q ss_pred EEECCCCEEEEeeC
Q 011922 459 HYDVAGRRLGFGPG 472 (475)
Q Consensus 459 vfD~~~~~iGFa~~ 472 (475)
+||++++|||||++
T Consensus 385 vfD~~~~riGfa~~ 398 (413)
T 3vla_A 385 QFDLATSRVGFSGT 398 (413)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 99999999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.4e-59 Score=485.53 Aligned_cols=336 Identities=21% Similarity=0.346 Sum_probs=271.6
Q ss_pred ceeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCcc
Q 011922 114 AFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLR 193 (475)
Q Consensus 114 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (475)
.+.+|+.. +..+++|+++|.||||+|++.|+|||||+++||+|.+| .+|+||+.++|.++.|....
T Consensus 9 ~~~~pl~~-~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~~ 74 (403)
T 3aup_A 9 LVVLPVQN-DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRAN 74 (403)
T ss_dssp CEEEEEEE-CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHTT
T ss_pred cEEEeeec-CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCcc
Confidence 46788875 35778999999999999999999999999999999875 37999999999999998765
Q ss_pred CC------CCCCCCCCCCCceeeeecC-CCCcEEEEEEEEEEEEec-----------ccccCccceecEEEEeEEcCC--
Q 011922 194 GL------FPSDDNCNSRECHFNIAYV-DGSGNSGFWATDRMTIQE-----------ANIKGYFTRYPFLLGCIRNSS-- 253 (475)
Q Consensus 194 ~~------~~~~~~C~~~~c~y~~~Yg-dgs~~~G~~~~Dtltl~~-----------~~~~~~~~~~~~~FGc~~~~~-- 253 (475)
.+ ......|.+..|.|.+.|+ ||+.+.|.+++|+|+|++ ..+++ +.|||++...
T Consensus 75 ~~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~------~~Fg~~~~~~~~ 148 (403)
T 3aup_A 75 THQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQ------FLFSCAPSFLVQ 148 (403)
T ss_dssp CCCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEE------EEEEEECGGGGS
T ss_pred ccCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccC------EEEECCcccccc
Confidence 43 1111356667899999998 788899999999999988 44577 9999999874
Q ss_pred -CCCCCCCceecCCCCCcchhhhcccc-----eeEEecCCCCCCcceEEecCCCCc-C--C-C-----CeEEeeCccCCC
Q 011922 254 -GDKSGASGIMGLDRSPVSIITKTKIS-----YFSYCLPSPYGSRGYITFGKRNTV-K--T-K-----FIKYTPIITTPE 318 (475)
Q Consensus 254 -g~~~~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~-~--~-~-----~~~~tpl~~~~~ 318 (475)
+.+...+||||||++++|+++|+... +|||||++.....|.|+||+ |+. + . + ++.|+|++.++
T Consensus 149 ~~~~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~- 226 (403)
T 3aup_A 149 KGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL- 226 (403)
T ss_dssp SSSSTTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT-
T ss_pred cCCCCCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC-
Confidence 33457899999999999999988643 99999998655689999999 765 3 2 4 89999999854
Q ss_pred CCeeEEEEEeEEEECCEEe-eecccccC-----CCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccc
Q 011922 319 QSEYYDITLTGISVGGKKL-PFSTSYFT-----KLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTC 392 (475)
Q Consensus 319 ~~~~y~v~l~gI~vgg~~l-~~~~~~~~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C 392 (475)
..+|.|.|++|+||++.+ .+++..+. .+++||||||++++||+++|++|+++|.+++..++.... ...++.|
T Consensus 227 -~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~c 304 (403)
T 3aup_A 227 -QGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKS-VAPFGLC 304 (403)
T ss_dssp -TSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECC-CTTCSCE
T ss_pred -CCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCC-CCCCCce
Confidence 369999999999999998 77665552 367999999999999999999999999887655444332 2345578
Q ss_pred cccCCCceeecceEEEEEcCC--cEEEecCCCeEEEeCCCeEEEEEEEcCCC-CCeeeechhhhcceEEEEECCCCEEEE
Q 011922 393 YDLRAYETVVVPKITIHFLGG--VDLELDVRGTLVVASVSQVCLGFAVYPSD-TNSFLLGNVQQRGHEVHYDVAGRRLGF 469 (475)
Q Consensus 393 ~~~~~~~~~~~P~i~~~f~gg--~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~~iGF 469 (475)
|+.+. ...+|+|+|+|.|+ ++++|++++|+++..++..|++|...+.+ .+.||||++|||++|++||++++||||
T Consensus 305 ~~c~~--~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf 382 (403)
T 3aup_A 305 FNSNK--INAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGF 382 (403)
T ss_dssp ECGGG--CCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEE
T ss_pred EECCC--cCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEE
Confidence 76442 23799999999665 69999999999987656799999886432 357999999999999999999999999
Q ss_pred -------eeCCCC
Q 011922 470 -------GPGNCS 475 (475)
Q Consensus 470 -------a~~~C~ 475 (475)
++++|+
T Consensus 383 ~A~~~~~~~~~C~ 395 (403)
T 3aup_A 383 STSSLHSHGVKCA 395 (403)
T ss_dssp ESSCGGGGTCCGG
T ss_pred ecccccccCCCcc
Confidence 778884
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.1e-56 Score=458.31 Aligned_cols=303 Identities=23% Similarity=0.423 Sum_probs=250.0
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
...|+. ++.+.+|+++|+||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+...
T Consensus 46 ~~~~l~--n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~--~~~y~~~~SsT~~~~~--------- 112 (370)
T 3psg_A 46 GDEPLE--NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSD--HNQFNPDDSSTFEATS--------- 112 (370)
T ss_dssp CCCTTG--GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT--SCCBCGGGCTTCEEEE---------
T ss_pred ceecce--eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCC--CCCCCCccCcCcEECC---------
Confidence 445654 4578899999999999999999999999999999999986 654 4899999999999863
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSP 269 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~ 269 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. | ..++||||||++.
T Consensus 113 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~------~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~ 171 (370)
T 3psg_A 113 --------------QELSITYGTGS-MTGILGYDTVQVGGISDTN------QIFGLSETEPGSFLYYAPFDGILGLAYPS 171 (370)
T ss_dssp --------------EEEEEESSSCE-EEEEEEEEEEEETTEEEEE------EEEEEECSCCCGGGGGCSCSEEEECSCGG
T ss_pred --------------cEEEEEeCCce-EEEEEEEEEEeeCCcccCC------eEEEEEEeecccccccCCccceeccCCcc
Confidence 69999999998 8999999999999988899 999999988762 3 2689999999987
Q ss_pred cc----------hhhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEE
Q 011922 270 VS----------IITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336 (475)
Q Consensus 270 ~S----------l~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~ 336 (475)
++ |++|.... +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.
T Consensus 172 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~ 247 (370)
T 3psg_A 172 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGET 247 (370)
T ss_dssp GCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSE
T ss_pred ccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEE
Confidence 65 34443333 999999987556899999999988 589999999987 67999999999999988
Q ss_pred eeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEE
Q 011922 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDL 416 (475)
Q Consensus 337 l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~ 416 (475)
+..... ..+||||||+++++|++++++|.+++++. + ...+ .+..+|. ....+|+|+|+| ||.++
T Consensus 248 ~~~~~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~---~-~~~g--~~~v~C~-----~~~~lP~i~f~~-~g~~~ 311 (370)
T 3psg_A 248 IACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGAS---E-NSDG--EMVISCS-----SIDSLPDIVFTI-DGVQY 311 (370)
T ss_dssp EECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCE---E-CTTC--CEECCGG-----GGGGCCCEEEEE-TTEEE
T ss_pred EecCCC----ceEEEcCCCCcEECCHHHHHHHHHHhCCc---c-cCCC--cEEEECC-----CcccCCcEEEEE-CCEEE
Confidence 764322 46999999999999999999999998654 1 2222 3445565 345789999999 89999
Q ss_pred EecCCCeEEEeCCCeEEE-EEEEcCC---CCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 417 ELDVRGTLVVASVSQVCL-GFAVYPS---DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 417 ~l~~~~~~~~~~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
.|++++|+++ .+..|+ +|..... .+..||||++|||++|++||++++|||||+++
T Consensus 312 ~l~~~~yi~~--~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 312 PLSPSAYILQ--DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EECHHHHEEE--CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECHHHhccc--CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 9999999998 345698 5766431 23479999999999999999999999999974
No 4
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1.8e-56 Score=458.94 Aligned_cols=329 Identities=22% Similarity=0.404 Sum_probs=263.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccC
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRG 194 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (475)
..+|++. ...+.+|+++|.|||| |+|||||+++||+|.+|. +|+.++|.++.|.....
T Consensus 3 ~~~pv~~-~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~~ 60 (381)
T 1t6e_X 3 VLAPVTK-DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLANA 60 (381)
T ss_dssp EEEEEEE-CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHHS
T ss_pred eEEeEEe-cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhccccC
Confidence 4567764 4677899999999998 999999999999998751 36678898888876543
Q ss_pred CCCCCCCCC---------CCCc-eeeeecCCCCcEEEEEEEEEEEEecc----cccCccceecEEEEeEEcC--CCCCCC
Q 011922 195 LFPSDDNCN---------SREC-HFNIAYVDGSGNSGFWATDRMTIQEA----NIKGYFTRYPFLLGCIRNS--SGDKSG 258 (475)
Q Consensus 195 ~~~~~~~C~---------~~~c-~y~~~Ygdgs~~~G~~~~Dtltl~~~----~~~~~~~~~~~~FGc~~~~--~g~~~~ 258 (475)
+. ...|+ +..| .|.++|+||+.+.|.+++|+|+|++. .+++ ..+++.|||++.+ .+.+..
T Consensus 61 ~~--~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~--~~~~~~Fg~~~~~~~~~~~~~ 136 (381)
T 1t6e_X 61 YP--APGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSK--VNVGVLAACAPSKLLASLPRG 136 (381)
T ss_dssp SC--CTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEE--EEEEEEEEECCGGGGTTSCTT
T ss_pred CC--CCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccc--eeeeeEeecCcccccCCCCCC
Confidence 21 13454 2457 59999999998899999999999863 3344 2223578999886 445568
Q ss_pred CCceecCCCCCcchhhhcccc-----eeEEecCCCCCCcceEEecCCCCc---CCCCeEEeeCccCCCCCeeEEEEEeEE
Q 011922 259 ASGIMGLDRSPVSIITKTKIS-----YFSYCLPSPYGSRGYITFGKRNTV---KTKFIKYTPIITTPEQSEYYDITLTGI 330 (475)
Q Consensus 259 ~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~---~~~~~~~tpl~~~~~~~~~y~v~l~gI 330 (475)
++||||||++++|+++|+..+ +|||||++. ..|+|+||+.+.. +.+++.|+|++.++.. .+|+|+|++|
T Consensus 137 ~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~-~~y~v~l~~i 213 (381)
T 1t6e_X 137 STGVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGS-PAHYISARSI 213 (381)
T ss_dssp EEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTC-CSCEECEEEE
T ss_pred CceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCC-cceEEEEEEE
Confidence 899999999999999998752 999999875 5799999998653 4789999999986543 3577999999
Q ss_pred EECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhh-------ccccC-CCCccccccccccCCCc---
Q 011922 331 SVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMK-------KYKRA-KGAGDILDTCYDLRAYE--- 399 (475)
Q Consensus 331 ~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~-------~~~~~-~~~~~~~~~C~~~~~~~--- 399 (475)
+||++.+.++...|..+++||||||++|+||+++|++|+++|.+++. .+++. .. ...+++||+.++..
T Consensus 214 ~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~C~~~~~~~~~~ 292 (381)
T 1t6e_X 214 VVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEA-VAPFGVCYDTKTLGNNL 292 (381)
T ss_dssp EETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECC-CTTCSCEEEGGGCCEET
T ss_pred EEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCC-CCCCCccCCCCCCcccc
Confidence 99999998887767557899999999999999999999999999874 23332 22 34668999876532
Q ss_pred -eeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEEcCC------CCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 400 -TVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPS------DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 400 -~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~------~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
...+|+|+|+|.||++++|++++|+++...+..|++|..... ..+.||||++|||++|+|||++++|||||++
T Consensus 293 ~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~ 372 (381)
T 1t6e_X 293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRL 372 (381)
T ss_dssp TEECCCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred cCCcCCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEecc
Confidence 247999999997679999999999998766789999987643 1357999999999999999999999999985
Q ss_pred C
Q 011922 473 N 473 (475)
Q Consensus 473 ~ 473 (475)
.
T Consensus 373 ~ 373 (381)
T 1t6e_X 373 P 373 (381)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=6.8e-56 Score=449.77 Aligned_cols=306 Identities=25% Similarity=0.428 Sum_probs=251.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+. +..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 13 ~~~~l~--n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~--------- 79 (351)
T 1tzs_A 13 AKEPLI--NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH--SRFQPSQSSTYSQPG--------- 79 (351)
T ss_dssp -CCTTG--GGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCBCCS---------
T ss_pred cceece--ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCC--CcCCcccCcceEECC---------
Confidence 456665 346789999999999999999999999999999999998 48754 899999999998752
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSP 269 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~ 269 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. | ...+||||||+..
T Consensus 80 --------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~ 138 (351)
T 1tzs_A 80 --------------QSFSIQYGTGS-LSGIIGADQVSVEGLTVVG------QQFGESVTEPGQTFVDAEFDGILGLGYPS 138 (351)
T ss_dssp --------------CEEEEESSSCE-EEEEEEEEEEEETTEEEEE------EEEEEECSCCCGGGGGCSCSEEEECSCGG
T ss_pred --------------CEEEEEeCCCC-eEEEEEEeEEEECCeEECC------eEEEEEEeccccccccCCCceEEecCCcc
Confidence 69999999998 7999999999999988888 999999987663 2 3689999999987
Q ss_pred cc----------hhhhcccc--eeEEecCCCCCC--cceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECC
Q 011922 270 VS----------IITKTKIS--YFSYCLPSPYGS--RGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGG 334 (475)
Q Consensus 270 ~S----------l~sQ~~~~--~FS~cL~~~~~~--~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg 334 (475)
++ |++|.... +||+||.+.... .|.|+|||+|++ +.+++.|+|+.. ..+|.|.|++|+|++
T Consensus 139 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~ 214 (351)
T 1tzs_A 139 LAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQVGG 214 (351)
T ss_dssp GSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEETT
T ss_pred ccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEECC
Confidence 65 34453332 999999987543 799999999987 589999999987 679999999999999
Q ss_pred EEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCc
Q 011922 335 KKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 335 ~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
+.+.... ...+||||||++++||+++|++|.+++++. +.. + .+..+|+.. ..+|+|+|+| +|+
T Consensus 215 ~~~~~~~----~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~--g--~~~~~C~~~-----~~~P~i~f~f-~g~ 277 (351)
T 1tzs_A 215 TVMFCSE----GCQAIVDTGTSLITGPSDKIKQLQNAIGAA---PVD--G--EYAVECANL-----NVMPDVTFTI-NGV 277 (351)
T ss_dssp EEEECTT----CEEEEECTTCSSEEECHHHHHHHHHHHTCE---ECS--S--SEEECGGGG-----GGSCCEEEEE-TTE
T ss_pred ceEEcCC----CceEEeccCCcceeCCHHHHHHHHHHhCCc---ccC--C--eEEEeCCCC-----ccCCcEEEEE-CCE
Confidence 8864322 146999999999999999999999998654 221 3 344568743 3689999999 789
Q ss_pred EEEecCCCeEEEeCC--CeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 415 DLELDVRGTLVVASV--SQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 415 ~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+++|++++|+++... ...|+ +|.... ...+.||||++|||++|++||++++|||||+++|.
T Consensus 278 ~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 278 PYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp EEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred EEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 999999999987532 45898 677653 13568999999999999999999999999999984
No 6
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=7.4e-56 Score=451.19 Aligned_cols=311 Identities=25% Similarity=0.368 Sum_probs=259.7
Q ss_pred ceeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CccCCCCCCCCCCCCCccccccCCCcccc
Q 011922 114 AFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPLFDPSKSKTFSKIPCNSTTCK 190 (475)
Q Consensus 114 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 190 (475)
...+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 7 ~~~~~l~~--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~------- 75 (361)
T 1mpp_A 7 VDTPGLYD--FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDPSSSSTFKETD------- 75 (361)
T ss_dssp EEEEEEEE--TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS--CCBCGGGCTTCEEEE-------
T ss_pred cceEEeec--CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC--CcCCCccCCceEecC-------
Confidence 34567764 56789999999999999999999999999999999998 59765 899999999999863
Q ss_pred CccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC------CC--CCCCce
Q 011922 191 KLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG------DK--SGASGI 262 (475)
Q Consensus 191 ~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g------~~--~~~~Gi 262 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .| ...+||
T Consensus 76 ----------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~~~~~~~~~~~~~~~~Gi 132 (361)
T 1mpp_A 76 ----------------YNLNITYGTGG-ANGIYFRDSITVGGATVKQ------QTLAYVDNVSGPTAEQSPDSELFLDGI 132 (361)
T ss_dssp ----------------EEEEEECSSCE-EEEEEEEEEEEETTEEEEE------EEEEEEEEEESGGGSSCTTCSSCCCEE
T ss_pred ----------------CeEEEEECCce-EEEEEEEEEEEECCEEEec------eEEEEEEeccCccccccccccCCCCCE
Confidence 69999999998 8999999999999988899 99999998765 33 368999
Q ss_pred ecCCCCCcchh----------------hhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeE
Q 011922 263 MGLDRSPVSII----------------TKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYY 323 (475)
Q Consensus 263 lGLg~~~~Sl~----------------sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y 323 (475)
||||+..+++. +|.... +||+||.+. ...|.|+|||+|++ +.+++.|+|+........+|
T Consensus 133 lGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~ 211 (361)
T 1mpp_A 133 FGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFW 211 (361)
T ss_dssp EECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEE
T ss_pred EEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCceeEE
Confidence 99999866543 343222 999999985 45799999999987 58999999999844323489
Q ss_pred EEEEeEEEECCEEeeecccccCCCCEE-EcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceee
Q 011922 324 DITLTGISVGGKKLPFSTSYFTKLSTE-IDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVV 402 (475)
Q Consensus 324 ~v~l~gI~vgg~~l~~~~~~~~~~~~i-iDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 402 (475)
.|.|++|+|+++.+..+.. .++| |||||++++||+++|++|++++.+. ++...+ .+..+|+.. ..
T Consensus 212 ~v~l~~i~v~~~~~~~~~~----~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g--~~~~~C~~~-----~~ 277 (361)
T 1mpp_A 212 DAPVTGVKIDGSDAVSFDG----AQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQ--GYTVPCSKY-----QD 277 (361)
T ss_dssp EEEEEEEEETTEEEEEEEE----EEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETT--EEEEEHHHH-----TT
T ss_pred EEEEeEEEECCeeeccCCC----CEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCC--cEEEECCCc-----cc
Confidence 9999999999998754322 4599 9999999999999999999999764 333333 355678743 35
Q ss_pred c-ceEEEEEc-C-----CcEEEecCCCeEEEeC-CCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 403 V-PKITIHFL-G-----GVDLELDVRGTLVVAS-VSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 403 ~-P~i~~~f~-g-----g~~~~l~~~~~~~~~~-~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+ |+|+|+|. | |+++.|++++|+++.. ....|+ +|.+. ..+.||||++|||++|++||++++|||||+++
T Consensus 278 ~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~--~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 355 (361)
T 1mpp_A 278 SKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD--GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355 (361)
T ss_dssp CCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE--SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCCcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC--CCCCEEEChHHhccEEEEEECCCCEEEEEEcc
Confidence 6 99999994 4 8999999999999865 356898 88775 34679999999999999999999999999999
Q ss_pred CC
Q 011922 474 CS 475 (475)
Q Consensus 474 C~ 475 (475)
|+
T Consensus 356 ~~ 357 (361)
T 1mpp_A 356 SG 357 (361)
T ss_dssp TT
T ss_pred cC
Confidence 95
No 7
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.7e-55 Score=444.71 Aligned_cols=300 Identities=22% Similarity=0.381 Sum_probs=254.1
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEe-----CCCCCCccCCCCCCCCCCCCCccccccCCCccc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQ-----CKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTC 189 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~-----c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C 189 (475)
+++|+.. ++.+|+++|.||||+|++.|++||||+++||+ |.+|..|..+ +.|||++|+||+...
T Consensus 3 i~~~l~~---~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~------ 71 (339)
T 3fv3_A 3 ISLSLIN---EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS--GTFTPSSSSSYKNLG------ 71 (339)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTT--CCBCGGGCTTCEEEE------
T ss_pred eeeEEEc---CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCC--CcCCCccCcceeeCC------
Confidence 5677764 46789999999999999999999999999998 7777678754 899999999999874
Q ss_pred cCccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCCCCC
Q 011922 190 KKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSP 269 (475)
Q Consensus 190 ~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~ 269 (475)
|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+ .+||||||+..
T Consensus 72 -----------------~~~~i~Yg~gs~~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~~----~~GilGLg~~~ 124 (339)
T 3fv3_A 72 -----------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITG------QQIADVTQTSV----DQGILGIGYTS 124 (339)
T ss_dssp -----------------EEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEESS----SSCEEECSCGG
T ss_pred -----------------ceEEEEECCCceEEEEEEEEEEEECCEEECc------eEEEEEEecCC----CceeEEecCcc
Confidence 6999999999889999999999999988899 99999998764 69999999976
Q ss_pred cc----------------hhhhcccc------eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEE
Q 011922 270 VS----------------IITKTKIS------YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDIT 326 (475)
Q Consensus 270 ~S----------------l~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~ 326 (475)
++ ++.|+..+ +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~ 200 (339)
T 3fv3_A 125 NEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTS----SQALTIS 200 (339)
T ss_dssp GCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCC----SSSCEEE
T ss_pred ccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEeccc----CccEEEE
Confidence 53 45555432 899999987666899999999887 589999999987 5689999
Q ss_pred EeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceE
Q 011922 327 LTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKI 406 (475)
Q Consensus 327 l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i 406 (475)
+++|+|+++.+... .++||||||++++||+++|++|.+++.+.+....... ..+..+|+. ..+|+|
T Consensus 201 l~~i~v~g~~~~~~------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~--~~~~~~C~~------~~~p~i 266 (339)
T 3fv3_A 201 LASVNLKGSSFSFG------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQ--YLYFIDCNT------DTSGTT 266 (339)
T ss_dssp EEEEEESSCEEEEE------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTE--EEEEECTTC------CCCSEE
T ss_pred EEEEEECCEeecCC------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccC--ceEEEecCC------CCCCcE
Confidence 99999999987654 3599999999999999999999999986522110122 245567863 368999
Q ss_pred EEEEcCCcEEEecCCCeEEEeCCCeEE-EEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 407 TIHFLGGVDLELDVRGTLVVASVSQVC-LGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 407 ~~~f~gg~~~~l~~~~~~~~~~~~~~C-l~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+|+|.+|++++|++++|+++... ..| ++|.+ .+.||||++|||++|++||++++|||||+++|+
T Consensus 267 ~f~f~~g~~~~v~~~~~~~~~~~-~~C~~~i~~----~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 267 VFNFGNGAKITVPNTEYVYQNGD-GTCLWGIQP----SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp EEEETTSCEEEEEGGGGEEECSS-SCEEESEEE----CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EEEECCCCEEEECHHHheeeCCC-CeEEEEEEe----CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 99996689999999999988643 568 57776 246999999999999999999999999999995
No 8
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=9.5e-56 Score=445.76 Aligned_cols=297 Identities=21% Similarity=0.304 Sum_probs=249.2
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCC--CCCC---------ccCCCCCCCCCCCCCcccccc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK--PCIH---------CFQQRDPLFDPSKSKTFSKIP 183 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~--~C~~---------C~~~~~~~fdps~SsT~~~~~ 183 (475)
+.+|+.. ++.+|+++|.||||+|++.|+|||||+++||+|. +|.. |.. .+.|||++|+||+...
T Consensus 3 ~~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~~ 77 (334)
T 1j71_A 3 VPTTLIN---EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQ--EGTFDPSSSSSAQNLN 77 (334)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGS--SCCBCGGGCTTCEEEE
T ss_pred eeEEEec---CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccC--CCcCCcccCCCcccCC
Confidence 5667754 4689999999999999999999999999999865 6752 654 4899999999999863
Q ss_pred CCCccccCccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCcee
Q 011922 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIM 263 (475)
Q Consensus 184 C~s~~C~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~Gil 263 (475)
|.|.+.|+||+.+.|.+++|+|+|++..+++ +.|||++... ..+|||
T Consensus 78 -----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~~~~------~~fg~~~~~~----~~~Gil 124 (334)
T 1j71_A 78 -----------------------QDFSIEYGDLTSSQGSFYKDTVGFGGISIKN------QQFADVTTTS----VDQGIM 124 (334)
T ss_dssp -----------------------EEEEEEBTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEES----SSSCEE
T ss_pred -----------------------CceEEEECCCCEEEEEEEEEEEEECCEEEcc------EEEEEEEecC----CCccEE
Confidence 7999999999988999999999999988888 9999999764 579999
Q ss_pred cCCCCCc--------chhhhcc----cc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEe
Q 011922 264 GLDRSPV--------SIITKTK----IS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLT 328 (475)
Q Consensus 264 GLg~~~~--------Sl~sQ~~----~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~ 328 (475)
|||+..+ +++.|+. .. +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.++
T Consensus 125 GLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~ 200 (334)
T 1j71_A 125 GIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS----SVELRVHLG 200 (334)
T ss_dssp ECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC----SSSCEEEEE
T ss_pred EEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccC----CCeEEEEEe
Confidence 9999764 4444443 32 999999976556899999999887 488999999987 568999999
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCcccc-ccccccCCCceeecceEE
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDIL-DTCYDLRAYETVVVPKIT 407 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~P~i~ 407 (475)
+|+|+++.+..+ ..+||||||++++||+++|++|++++.+.+ +... ..+. .+|+ .+|+|+
T Consensus 201 ~i~v~g~~~~~~------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~--~~~~~~~C~--------~~p~i~ 261 (334)
T 1j71_A 201 SINFDGTSVSTN------ADVVLDSGTTITYFSQSTADKFARIVGATW---DSRN--EIYRLPSCD--------LSGDAV 261 (334)
T ss_dssp EEEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEE---ETTT--TEEECSSSC--------CCSEEE
T ss_pred EEEECCEeccCC------ccEEEeCCCCcEecCHHHHHHHHHHcCCcc---cCCC--ceEEEEcCC--------CCCceE
Confidence 999999988653 359999999999999999999999998763 2211 1333 6785 279999
Q ss_pred EEEcCCcEEEecCCCeEEEeCCCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 408 IHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 408 ~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
|+|.||++++|++++|+++..++..|++..... +.||||++|||++|++||++++|||||+++|+
T Consensus 262 f~f~~g~~~~i~~~~y~~~~~~~~~C~~~i~~~---~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 262 FNFDQGVKITVPLSELILKDSDSSICYFGISRN---DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp EEESTTCEEEEEGGGGEEECSSSSCEEESEEEC---TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEcCCcEEEECHHHheeecCCCCeeEEEEeEC---CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 999778999999999999865545698544332 35999999999999999999999999999995
No 9
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=2.8e-55 Score=441.47 Aligned_cols=302 Identities=22% Similarity=0.403 Sum_probs=251.4
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
.++|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+...
T Consensus 3 ~~~~l~~--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~--------- 69 (329)
T 1dpj_A 3 HDVPLTN--YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKANG--------- 69 (329)
T ss_dssp EEEECEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred cceeeee--cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc--CcCCcccCcCeEECC---------
Confidence 3567764 457899999999999999999999999999999999987 8765 789999999998753
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSP 269 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~ 269 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .| ...+||||||+..
T Consensus 70 --------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~f~~~~~~GilGLg~~~ 128 (329)
T 1dpj_A 70 --------------TEFAIQYGTGS-LEGYISQDTLSIGDLTIPK------QDFAEATSEPGLTFAFGKFDGILGLGYDT 128 (329)
T ss_dssp --------------EEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEECCHHHHTTCSCSEEEECSCGG
T ss_pred --------------cEEEEEECCce-EEEEEEEEEEEECCeEECC------eEEEEEEecCccccccCCcceEEEeCCch
Confidence 69999999994 8999999999999988898 99999998765 22 3689999999987
Q ss_pred cc----------hhhhccc--ceeEEecCCCC---CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEEC
Q 011922 270 VS----------IITKTKI--SYFSYCLPSPY---GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVG 333 (475)
Q Consensus 270 ~S----------l~sQ~~~--~~FS~cL~~~~---~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vg 333 (475)
++ |++|... .+||+||.+.. ...|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+
T Consensus 129 ~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~ 204 (329)
T 1dpj_A 129 ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLG 204 (329)
T ss_dssp GCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEEET
T ss_pred hhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEEEC
Confidence 65 3445333 29999998753 24799999999987 478999999987 67999999999999
Q ss_pred CEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCC
Q 011922 334 GKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGG 413 (475)
Q Consensus 334 g~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 413 (475)
++.+... ...+||||||++++||+++|++|.+++.+. ....+ ||.++|.....+|+|+|+| +|
T Consensus 205 ~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g-------~~~~~C~~~~~~P~i~f~f-~g 267 (329)
T 1dpj_A 205 DEYAELE-----SHGAAIDTGTSLITLPSGLAEMINAEIGAK----KGWTG-------QYTLDCNTRDNLPDLIFNF-NG 267 (329)
T ss_dssp TEEEECS-----SCEEEECTTCSCEEECHHHHHHHHHHHTCE----ECTTS-------SEEECGGGGGGCCCEEEEE-TT
T ss_pred CeEecCC-----CccEEeeCCCCcEECCHHHHHHHHHHhCCc----cCCCC-------eEEEECCCCCcCCcEEEEE-CC
Confidence 9987632 246999999999999999999999998643 11122 3333444455789999999 68
Q ss_pred cEEEecCCCeEEEeCCCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 414 VDLELDVRGTLVVASVSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
++++|++++|+++.+ ..|+ +|.... ...+.||||++|||++|++||++++|||||+++
T Consensus 268 ~~~~i~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 268 YNFTIGPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EEEEECTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 999999999999864 5898 677652 234689999999999999999999999999874
No 10
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=6.8e-56 Score=445.89 Aligned_cols=299 Identities=24% Similarity=0.364 Sum_probs=248.3
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNC 202 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C 202 (475)
...+.+|+++|.||||+|++.|+|||||+++||+|.+|..|..+..+.|||++|+||+.++ +
T Consensus 11 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~-----------------~- 72 (329)
T 3c9x_A 11 DSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS-----------------G- 72 (329)
T ss_dssp STTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT-----------------T-
T ss_pred CCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC-----------------C-
Confidence 3577899999999999999999999999999999999998765666899999999999863 1
Q ss_pred CCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcch-------
Q 011922 203 NSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVSI------- 272 (475)
Q Consensus 203 ~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl------- 272 (475)
|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||+..++.
T Consensus 73 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 142 (329)
T 3c9x_A 73 ----ASWSISYGDGSSSSGDVYTDKVTIGGFSVNT------QGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQK 142 (329)
T ss_dssp ----CBEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCC
T ss_pred ----CeEEEEeCCCCcEEEEEEEEEEEECCEEEcc------eEEEEEEecCccccccCCCceeEEeCcccccccCCCCCC
Confidence 6999999999989999999999999988899 9999999876643 3689999999986653
Q ss_pred --hh----hcccceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccC
Q 011922 273 --IT----KTKISYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFT 345 (475)
Q Consensus 273 --~s----Q~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~ 345 (475)
++ |+...+||+||.+. ..|.|+|||+|++ +.+++.|+|+.. ...+|.|.+++|+|+++.+. ...
T Consensus 143 ~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~v~~~~~~--~~~-- 213 (329)
T 3c9x_A 143 TWFSNAASSLAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDN---SQGFWEFTASGYSVGGGKLN--RNS-- 213 (329)
T ss_dssp CHHHHHHTTSSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBC---TTSSCEEEECCEEETTCCCC--SCC--
T ss_pred CHHHHHHHhcCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccC---CCceEEEEEeeEEECCEecc--CCC--
Confidence 22 33233999999863 4799999999987 589999999985 25789999999999998753 222
Q ss_pred CCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEE
Q 011922 346 KLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLV 425 (475)
Q Consensus 346 ~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 425 (475)
.++||||||++++||+++|++|.+++.++. +....+ .+..+|+ ..+|+|+|+| +|+++.|++++|++
T Consensus 214 -~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~--~~~~~C~-------~~~P~i~f~f-~g~~~~ip~~~~~~ 280 (329)
T 3c9x_A 214 -IDGIADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQE--GVVFDCD-------EDLPSFSFGV-GSSTITIPGDLLNL 280 (329)
T ss_dssp -EEEEECTTCCSEEECHHHHHHHHTTCTTCE--EETTTT--EEEEETT-------CCCCCEEEEE-TTEEEEECGGGGEE
T ss_pred -ceEEEECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCC--EEEEECC-------CCCCcEEEEE-CCEEEEECHHHeee
Confidence 469999999999999999999998885431 222222 3345685 2689999999 68999999999998
Q ss_pred EeC--CCeEEEE-EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011922 426 VAS--VSQVCLG-FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPG 472 (475)
Q Consensus 426 ~~~--~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~ 472 (475)
... ....|++ |... ...+.||||++|||++|++||++++|||||+.
T Consensus 281 ~~~~~~~~~C~~~i~~~-~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 281 TPLEEGSSTCFGGLQSS-SGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp EESSTTCSEEEESEEEC-TTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred eccCCCCCeEEEEEEcC-CCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 753 2478996 5554 34568999999999999999999999999984
No 11
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=1.2e-55 Score=444.22 Aligned_cols=297 Identities=24% Similarity=0.345 Sum_probs=246.5
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCC
Q 011922 124 VSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCN 203 (475)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 203 (475)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|..|.. ..+.|||++|+||+.+.|
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~~------------------- 71 (329)
T 1oew_A 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLSG------------------- 71 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEEE-------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecCC-------------------
Confidence 467899999999999999999999999999999999998654 568999999999998631
Q ss_pred CCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcch--------
Q 011922 204 SRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVSI-------- 272 (475)
Q Consensus 204 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl-------- 272 (475)
|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||+..++.
T Consensus 72 ---~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 142 (329)
T 1oew_A 72 ---ATWSISYGDGSSSSGDVYTDTVSVGGLTVTG------QAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKT 142 (329)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCC
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCEEEee------eEEEEEEecCccccccCCCceEEEeccccccccCcCCCCC
Confidence 6999999999988999999999999988899 9999999876643 3689999999986653
Q ss_pred -hhhcc----cceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCC
Q 011922 273 -ITKTK----ISYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTK 346 (475)
Q Consensus 273 -~sQ~~----~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~ 346 (475)
++|+. ..+||+||.+. ..|.|+|||+|++ +.+++.|+|+.. .+.+|.|.+++|+|+++.+.. ..
T Consensus 143 ~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~v~~~~~~~--~~--- 212 (329)
T 1oew_A 143 FFDNAKASLDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS--TS--- 212 (329)
T ss_dssp HHHHHTTTSSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBC---TTSSCEEEEEEEEETTSCCEE--EE---
T ss_pred HHHHHHHhccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccC---CCceEEEEEeeEEECCeeccC--CC---
Confidence 33333 23999999863 5799999999987 589999999985 257899999999999987642 12
Q ss_pred CCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEE
Q 011922 347 LSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVV 426 (475)
Q Consensus 347 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 426 (475)
.++||||||++++||+++|++|++++.++. +....+ .+..+|+ ..+|+|+|+| ||++++|++++|++.
T Consensus 213 ~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g--~~~~~C~-------~~~P~i~f~f-gg~~~~ip~~~~~~~ 280 (329)
T 1oew_A 213 IDGIADTGTTLLYLPATVVSAYWAQVSGAK--SSSSVG--GYVFPCS-------ATLPSFTFGV-GSARIVIPGDYIDFG 280 (329)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTT--EEEEETT-------CCCCCEEEEE-TTEEEEECHHHHEEE
T ss_pred ceEEEeCCCCCEECCHHHHHHHHHhCCCcE--EcCCCC--EEEEECC-------CCCCcEEEEE-CCEEEEECHHHeeee
Confidence 359999999999999999999998885431 222222 3445686 2689999999 899999999999987
Q ss_pred e-C-CCeEEEE-EEEcCCCCCeeeechhhhcceEEEEEC-CCCEEEEeeC
Q 011922 427 A-S-VSQVCLG-FAVYPSDTNSFLLGNVQQRGHEVHYDV-AGRRLGFGPG 472 (475)
Q Consensus 427 ~-~-~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~-~~~~iGFa~~ 472 (475)
. + ....|++ |... ...+.||||++|||++|++||+ +++|||||+.
T Consensus 281 ~~~~~~~~C~~~i~~~-~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 281 PISTGSSSCFGGIQSS-AGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ESSTTCSEEEESEEES-TTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred ecCCCCCeEEEEEEeC-CCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 5 2 3478996 5544 3456899999999999999999 9999999984
No 12
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.4e-55 Score=442.87 Aligned_cols=302 Identities=21% Similarity=0.343 Sum_probs=247.8
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCC
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGL 195 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 195 (475)
++++.. ...+.+|+++|.||||+|++.|+|||||+++||+|++|..| .+..+.|||++|+||+...
T Consensus 5 ~v~~~~-~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~~------------ 70 (325)
T 2apr_A 5 TVPMTD-YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQADG------------ 70 (325)
T ss_dssp EEEEEE-ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEEE------------
T ss_pred ceeeee-cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeCC------------
Confidence 344433 35788999999999999999999999999999999999998 6667899999999998742
Q ss_pred CCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCC--CCCceecCCCCCcc--
Q 011922 196 FPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKS--GASGIMGLDRSPVS-- 271 (475)
Q Consensus 196 ~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~--~~~GilGLg~~~~S-- 271 (475)
|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.|. ..+||||||+..++
T Consensus 71 -----------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~ 133 (325)
T 2apr_A 71 -----------RTWSISYGDGSSASGILAKDNVNLGGLLIKG------QTIELAKREAASFASGPNDGLLGLGFDTITTV 133 (325)
T ss_dssp -----------EEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHTSSCSEEEECSCGGGCSS
T ss_pred -----------CEEEEEECCCCCEEEEEEEEEEEECCEEECc------EEEEEEeccCcccccCCCceEEEeCCcccccc
Confidence 7999999999989999999999999988888 99999998765442 48999999998764
Q ss_pred -----hhhhcc----c--ceeEEecCCC-CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEee
Q 011922 272 -----IITKTK----I--SYFSYCLPSP-YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLP 338 (475)
Q Consensus 272 -----l~sQ~~----~--~~FS~cL~~~-~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~ 338 (475)
++.|+. . .+||+||.+. ....|.|+|||+|++ +.+++.|+|+.. .+.+|.|.+++|+||+ .+
T Consensus 134 ~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~~v~l~~i~vg~-~~- 208 (325)
T 2apr_A 134 RGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDN---SRGWWGITVDRATVGT-ST- 208 (325)
T ss_dssp TTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBC---TTSSCEEEECEEEETT-EE-
T ss_pred cCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccC---CCCEEEEEEeEEEECC-Ee-
Confidence 333332 2 2999999763 235799999999987 589999999975 2578999999999999 33
Q ss_pred ecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEe
Q 011922 339 FSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLEL 418 (475)
Q Consensus 339 ~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 418 (475)
.... .++||||||++++||+++|+++++++.+.+. .. + .+..+|+. ..+|+|+|+| +|.+++|
T Consensus 209 -~~~~---~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~---~~-g--~~~~~C~~------~~~p~i~f~f-~g~~~~i 271 (325)
T 2apr_A 209 -VASS---FDGILDTGTTLLILPNNIAASVARAYGASDN---GD-G--TYTISCDT------SAFKPLVFSI-NGASFQV 271 (325)
T ss_dssp -EECC---EEEEECTTCSSEEEEHHHHHHHHHHHTCEEC---SS-S--CEEECSCG------GGCCCEEEEE-TTEEEEE
T ss_pred -cCCC---ceEEEecCCccEECCHHHHHHHHHHHhcccC---CC-C--eEEEECCC------CCCCcEEEEE-CCEEEEE
Confidence 2222 3599999999999999999999999976532 11 2 23446752 2489999999 4569999
Q ss_pred cCCCeEEEeCCCeEEEEE-EEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 419 DVRGTLVVASVSQVCLGF-AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 419 ~~~~~~~~~~~~~~Cl~~-~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
|+++|++... +..|++. .... .+.||||++|||++|++||++++|||||+++
T Consensus 272 p~~~~~~~~~-~~~C~~~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 272 SPDSLVFEEF-QGQCIAGFGYGN--WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp CGGGGEEEEE-TTEEEESEEEES--SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CHHHEEEcCC-CCeEEEEEEcCC--CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 9999998754 6789964 4442 5679999999999999999999999999974
No 13
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.7e-55 Score=445.34 Aligned_cols=300 Identities=21% Similarity=0.340 Sum_probs=248.8
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCC--CCC---------CccCCCCCCCCCCCCCcccccc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK--PCI---------HCFQQRDPLFDPSKSKTFSKIP 183 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~--~C~---------~C~~~~~~~fdps~SsT~~~~~ 183 (475)
+.+|+.. ++.+|+++|.||||+|++.|+|||||+++||+|. +|. .|.. .+.|||++|+||+...
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~~ 77 (342)
T 2qzx_A 3 VAVTLHN---EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKS--AGSYSPASSRTSQNLN 77 (342)
T ss_dssp EEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGT--TCCBCGGGCTTCEEEE
T ss_pred eeEEEec---CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccC--CCcCCcccCCCcccCC
Confidence 4566654 5689999999999999999999999999999865 675 2654 4899999999999863
Q ss_pred CCCccccCccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCcee
Q 011922 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIM 263 (475)
Q Consensus 184 C~s~~C~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~Gil 263 (475)
|.|.+.|+||+.+.|.+++|+|+|++..+++ +.|||++... ..+|||
T Consensus 78 -----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~----~~~Gil 124 (342)
T 2qzx_A 78 -----------------------TRFDIKYGDGSYAKGKLYKDTVGIGGVSVRD------QLFANVWSTS----ARKGIL 124 (342)
T ss_dssp -----------------------EEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEEC----SSSCEE
T ss_pred -----------------------CcEEEEeCCCCeEEEEEEEEEEEECCEEecc------eEEEEEEecC----CCcCEE
Confidence 7999999999988999999999999988888 9999999864 579999
Q ss_pred cCCCCCc--------chhhhcc----cc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEe
Q 011922 264 GLDRSPV--------SIITKTK----IS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLT 328 (475)
Q Consensus 264 GLg~~~~--------Sl~sQ~~----~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~ 328 (475)
|||+... +++.|+. .. +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.|+
T Consensus 125 GLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~ 200 (342)
T 2qzx_A 125 GIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVGLR 200 (342)
T ss_dssp ECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEE
T ss_pred EEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccC----CceEEEEEe
Confidence 9999764 4444443 32 999999976556899999999887 588999999987 458999999
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEE
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITI 408 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 408 (475)
+|+|+++.+..+ .++||||||++++||+++|++|++++.+.+. +....+ ..+..+|+ .+|+|+|
T Consensus 201 ~i~v~g~~~~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~C~--------~~p~i~f 264 (342)
T 2qzx_A 201 SVNVRGRNVDAN------TNVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGN-KVYVADCK--------TSGTIDF 264 (342)
T ss_dssp EEEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSC-EEEEECTT--------CCCEEEE
T ss_pred EEEECCEecCCC------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCC-cEEEEECC--------CCCcEEE
Confidence 999999988653 3599999999999999999999999987642 122111 13445674 2799999
Q ss_pred EEcCCcEEEecCCCeEEEe-----CCCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 409 HFLGGVDLELDVRGTLVVA-----SVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 409 ~f~gg~~~~l~~~~~~~~~-----~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+|.||++++|++++|+++. +....|++..... +.||||++|||++|++||++++|||||+++|+
T Consensus 265 ~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~---~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 265 QFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES---EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp EETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC---SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EECCCcEEEEcHHHhcccccccCCCCCCccEEEEecC---CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 9977899999999999874 2236798644432 35999999999999999999999999999995
No 14
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.4e-55 Score=442.57 Aligned_cols=300 Identities=21% Similarity=0.361 Sum_probs=250.9
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCcc
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLR 193 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (475)
.+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 5 ~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~---------- 70 (323)
T 3cms_A 5 SVPLTN--YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH--QRFDPRKSSTFQNLG---------- 70 (323)
T ss_dssp EEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE----------
T ss_pred eeeeEe--ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCC--CCCCCccCCCeEECC----------
Confidence 466653 46789999999999999999999999999999999995 39765 799999999999863
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCc
Q 011922 194 GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPV 270 (475)
Q Consensus 194 ~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~ 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .| ...+||||||++.+
T Consensus 71 -------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 130 (323)
T 3cms_A 71 -------------KPLSIHYGTGS-MQGILGYDTVTVSNIVDIQ------QTVGLSTQEPGDFFTYAEFDGILGMAYPSL 130 (323)
T ss_dssp -------------EEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEECCSHHHHHSSCSEEEECSCGGG
T ss_pred -------------cEEEEEeCCCC-eEEEEEEEEEEECCeEEec------cEEEEEEecccccccccCCceEEecCcchh
Confidence 69999999998 8999999999999988888 99999998866 23 36899999999876
Q ss_pred c----------hhhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEe
Q 011922 271 S----------IITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKL 337 (475)
Q Consensus 271 S----------l~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l 337 (475)
+ |++|.... +||+||.+... .|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++.+
T Consensus 131 s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~ 205 (323)
T 3cms_A 131 ASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ-ESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVVV 205 (323)
T ss_dssp SCTTCCCHHHHHHHTTCSSSSEEEEECCTTSS-CEEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEE
T ss_pred hccCCCCHHHHHHHCCCCCCCEEEEEECCCCC-CEEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCEEe
Confidence 5 34554332 99999998643 399999999987 478999999987 679999999999999987
Q ss_pred eecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEE
Q 011922 338 PFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLE 417 (475)
Q Consensus 338 ~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~ 417 (475)
.++.. ..+||||||++++||+++|++|.+++.+. ....+ .+..+|++. ..+|+|+|+| +|++++
T Consensus 206 ~~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g--~~~~~C~~~-----~~~P~i~f~f-~g~~~~ 269 (323)
T 3cms_A 206 ACEGG----CQAILDTGTSKLVGPSSDILNIQQAIGAT----QNQYG--EFDIDCDNL-----SYMPTVVFEI-NGKMYP 269 (323)
T ss_dssp ESTTC----EEEEECTTCCSEEECHHHHHHHHHHHTCE----EETTT--EEEECTTCT-----TTSCCEEEEE-TTEEEE
T ss_pred ecCCC----cEEEEecCCccEeCCHHHHHHHHHHhCCe----ecCCC--cEEEECCCC-----ccCceEEEEE-CCEEEE
Confidence 65432 46999999999999999999999998653 22222 344568643 3689999999 789999
Q ss_pred ecCCCeEEEeCCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 418 LDVRGTLVVASVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 418 l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
|++++|+++ .+..|+ +|.... ..+.||||++|||++|++||++++|||||+++
T Consensus 270 i~~~~y~~~--~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 270 LTPSAYTSQ--DQGFCTSGFQSEN-HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp ECHHHHEEE--ETTEEEESEEEC----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ECHHHhccC--CCCEEEEEEEeCC-CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 999999988 356898 577653 34689999999999999999999999999864
No 15
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=4.3e-55 Score=439.11 Aligned_cols=300 Identities=22% Similarity=0.430 Sum_probs=252.7
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCcc
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLR 193 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (475)
.+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+...
T Consensus 3 ~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~---------- 68 (324)
T 1am5_A 3 TEQMKN--EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH--NKFKPRQSSTYVETG---------- 68 (324)
T ss_dssp EEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTS--CCBCGGGCTTCEEEE----------
T ss_pred eeeeec--CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCC--CcCCCccCCCeEeCC----------
Confidence 456653 467899999999999999999999999999999999984 9765 799999999998863
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCCc
Q 011922 194 GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSPV 270 (475)
Q Consensus 194 ~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~ 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. | ...+||||||+..+
T Consensus 69 -------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 128 (324)
T 1am5_A 69 -------------KTVDLTYGTGG-MRGILGQDTVSVGGGSDPN------QELGESQTEPGPFQAAAPFDGILGLAYPSI 128 (324)
T ss_dssp -------------EEEEEECSSCE-EEEEEEEEEEESSSSCEEE------EEEEEEEECCSTTTTTCSSSEEEECSCGGG
T ss_pred -------------cEEEEEECCCC-eEEEEEECceeECCcEEcc------cEEEEEEecccccccCCCCceEEecCCccc
Confidence 69999999997 5999999999999988899 999999988663 3 36899999999876
Q ss_pred ch----------hhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEe
Q 011922 271 SI----------ITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKL 337 (475)
Q Consensus 271 Sl----------~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l 337 (475)
+. .+|.... +||+||.+.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.+
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~ 204 (324)
T 1am5_A 129 AAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTA 204 (324)
T ss_dssp CGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEEC
T ss_pred cccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCcee
Confidence 53 3443222 999999987556899999999987 588999999987 679999999999999875
Q ss_pred eecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEE
Q 011922 338 PFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLE 417 (475)
Q Consensus 338 ~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~ 417 (475)
..+. ..+||||||++++||+++|++|.+++.+. ...+ .+..+|+. ...+|+|+|+| +|++++
T Consensus 205 ~~~~-----~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~g--~~~~~C~~-----~~~~P~i~f~f-~g~~~~ 266 (324)
T 1am5_A 205 ACEG-----CQAIVDTGTSKIVAPVSALANIMKDIGAS-----ENQG--EMMGNCAS-----VQSLPDITFTI-NGVKQP 266 (324)
T ss_dssp CCCC-----EEEEECTTCSSEEECTTTHHHHHHHHTCE-----ECCC--CEECCTTS-----SSSSCCEEEEE-TTEEEE
T ss_pred eccC-----ceEEEecCCccEECCHHHHHHHHHHhCCc-----ccCC--cEEEeCCC-----cccCCcEEEEE-CCEEEE
Confidence 4221 45999999999999999999999998653 1222 34567864 33689999999 789999
Q ss_pred ecCCCeEEEeCCCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 418 LDVRGTLVVASVSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 418 l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
|++++|+++. +..|+ +|...+ ...+.||||++|||++|++||++++|||||+++
T Consensus 267 i~~~~y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 267 LPPSAYIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp ECHHHHEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred ECHHHhcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 9999999886 56898 777653 134689999999999999999999999999974
No 16
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=2.3e-55 Score=450.03 Aligned_cols=303 Identities=22% Similarity=0.388 Sum_probs=251.6
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CccCCCCCCCCCCCCCccccccCCCcccc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPLFDPSKSKTFSKIPCNSTTCK 190 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 190 (475)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+...
T Consensus 51 ~~~~l~n--~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~~------- 119 (383)
T 2x0b_A 51 SSVILTN--YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG------- 119 (383)
T ss_dssp CEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEEE-------
T ss_pred ceEeeee--cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEECC-------
Confidence 3466653 56789999999999999999999999999999999997 39765 899999999999863
Q ss_pred CccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCC
Q 011922 191 KLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDR 267 (475)
Q Consensus 191 ~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~ 267 (475)
|.|.++|++|+ +.|++++|+|+|++..++ +.|||++...+. | ..++||||||+
T Consensus 120 ----------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~-------~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 120 ----------------TELTLRYSTGT-VSGFLSQDIITVGGITVT-------QMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp ----------------EEEEEECSSCE-EEEEEEEEEEEETTEEEE-------EEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred ----------------cEEEEEcCCcc-EEEEEEeeEEEEcCceEE-------EEEEEEEecCCcccccCCCceEeccCC
Confidence 69999999998 899999999999875432 899999998662 2 37899999999
Q ss_pred CCcc----------hhhhcccc--eeEEecCCCCCC----cceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEE
Q 011922 268 SPVS----------IITKTKIS--YFSYCLPSPYGS----RGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGI 330 (475)
Q Consensus 268 ~~~S----------l~sQ~~~~--~FS~cL~~~~~~----~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI 330 (475)
..++ |++|.... +||+||.+.... .|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|
T Consensus 176 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~~i 251 (383)
T 2x0b_A 176 IEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGV 251 (383)
T ss_dssp GGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEECEE
T ss_pred CccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEeEE
Confidence 8776 45564333 999999986443 799999999987 488999999987 67999999999
Q ss_pred EECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEE
Q 011922 331 SVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHF 410 (475)
Q Consensus 331 ~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 410 (475)
+|+++.+.... ...+||||||+++++|+++|++|.+++++. . ..+ .+..+|+.. ..+|+|+|+|
T Consensus 252 ~v~~~~~~~~~----~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~-~~g--~~~v~C~~~-----~~~P~i~f~~ 315 (383)
T 2x0b_A 252 SVGSSTLLCED----GCLALVDTGASYISGSTSSIEKLMEALGAK----K-RLF--DYVVKCNEG-----PTLPDISFHL 315 (383)
T ss_dssp EESSCCCBSTT----CEEEEECTTCSSEEECHHHHHHHHHHHTCE----E-CSS--CEEEEGGGT-----TTCCCEEEEE
T ss_pred EeCCceEEcCC----CcEEEEcCCCceEEcCHHHHHHHHHHhCCc----c-cCC--cEEEecccc-----ccCceEEEEE
Confidence 99998753221 146999999999999999999999998754 2 222 345678743 3689999999
Q ss_pred cCCcEEEecCCCeEEEeCC--CeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 411 LGGVDLELDVRGTLVVASV--SQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 411 ~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+|+++.|++++|+++... +..|+ +|.... ...+.||||++|||++|+|||++++|||||+++
T Consensus 316 -~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 316 -GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp -TTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred -CCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 789999999999987542 46898 687653 135689999999999999999999999999864
No 17
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=4.4e-55 Score=438.19 Aligned_cols=295 Identities=23% Similarity=0.401 Sum_probs=248.6
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCC
Q 011922 123 SVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDD 200 (475)
Q Consensus 123 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (475)
++.+.+|+++|.||||+|+++|++||||+++||+|++|.. |..+ +.|||++|+||+...
T Consensus 7 n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------- 67 (320)
T 4aa9_A 7 SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH--HRFDPRKSSTFRNLG----------------- 67 (320)
T ss_dssp -CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE-----------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCC--CCCCCCCCcCeEcCC-----------------
Confidence 3567899999999999999999999999999999999985 8755 899999999999863
Q ss_pred CCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCCcc------
Q 011922 201 NCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSPVS------ 271 (475)
Q Consensus 201 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S------ 271 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .+ ...+||||||+..++
T Consensus 68 ------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 134 (320)
T 4aa9_A 68 ------KPLSIHYGTGS-MEGFLGYDTVTVSNIVDPN------QTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVP 134 (320)
T ss_dssp ------EEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCC
T ss_pred ------cEEEEEECCcE-EEEEEEEEEEEECCEeecC------eEEEEEEEcccccccccCcccEEecCcccccccCCCC
Confidence 69999999998 7999999999999988899 99999998876 22 257999999997654
Q ss_pred h----hhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeeccccc
Q 011922 272 I----ITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYF 344 (475)
Q Consensus 272 l----~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~ 344 (475)
+ .+|.... +||+||.+. ...|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++.+..+..
T Consensus 135 ~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~~~-- 207 (320)
T 4aa9_A 135 VFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVACVGG-- 207 (320)
T ss_dssp HHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEESTTC--
T ss_pred HHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEeccCCC--
Confidence 3 3443332 899999986 45899999999987 488999999986 67999999999999998865422
Q ss_pred CCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeE
Q 011922 345 TKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTL 424 (475)
Q Consensus 345 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 424 (475)
..+||||||++++||+++|++|.+++++. ....+ .+..+|.. ...+|+|+|+| +|++++|++++|+
T Consensus 208 --~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~~~~g--~~~~~C~~-----~~~~p~i~f~f-~g~~~~l~~~~y~ 273 (320)
T 4aa9_A 208 --CQAILDTGTSVLFGPSSDILKIQMAIGAT----ENRYG--EFDVNCGN-----LRSMPTVVFEI-NGRDYPLSPSAYT 273 (320)
T ss_dssp --EEEEECTTCSSEEEEHHHHHHHHHHTTCE----ECTTS--CEEECGGG-----GGGCCCEEEEE-TTEEEEECHHHHE
T ss_pred --cEEEEECCCCcEECCHHHHHHHHHHhCCc----ccCCC--cEEEeCCC-----CCcCceEEEEE-CCEEEEECHHHhc
Confidence 46999999999999999999999998653 12222 34556753 34789999999 7899999999999
Q ss_pred EEeCCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 425 VVASVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 425 ~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
... +..|+ +|... ...+.||||++|||++|++||++++|||||+++
T Consensus 274 ~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 274 SKD--QGFCTSGFQGD-NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp EEE--TTEEEESEEEE-TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCC--CCeEEEEEEcC-CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 763 56898 57764 234679999999999999999999999999974
No 18
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=7.5e-55 Score=438.30 Aligned_cols=302 Identities=26% Similarity=0.469 Sum_probs=251.6
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--ccCCCCCCCCCCCCCccccccCCCccccCcc
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLR 193 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (475)
.+|+. ..+.+|+++|.||||+|++.|+|||||+++||+|++|.. |..+ +.|||++|+||+...
T Consensus 4 ~~~l~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~---------- 68 (329)
T 1htr_B 4 YEPMA---YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH--SRFNPSESSTYSTNG---------- 68 (329)
T ss_dssp CCGGG---GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE----------
T ss_pred eeeeE---EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCC--CcCCCccCCCeEECC----------
Confidence 45665 467899999999999999999999999999999999985 9765 899999999998863
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCCCc
Q 011922 194 GLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRSPV 270 (475)
Q Consensus 194 ~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~ 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. | ...+||||||+..+
T Consensus 69 -------------~~~~i~Yg~gs-~~G~~~~D~v~~g~~~~~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 128 (329)
T 1htr_B 69 -------------QTFSLQYGSGS-LTGFFGYDTLTVQSIQVPN------QEFGLSENEPGTNFVYAQFDGIMGLAYPAL 128 (329)
T ss_dssp -------------EEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEESSCSSGGGGGCSCCEEEECCCCSC
T ss_pred -------------cEEEEEeCCCC-eEEEEEeeeEEEcceEECc------eEEEEEEEccccccccCCCceEEecCCCcc
Confidence 69999999998 5999999999999988899 999999988663 3 36899999999876
Q ss_pred ch----------hhhcccc--eeEEecCCCCCC-cceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEE
Q 011922 271 SI----------ITKTKIS--YFSYCLPSPYGS-RGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336 (475)
Q Consensus 271 Sl----------~sQ~~~~--~FS~cL~~~~~~-~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~ 336 (475)
+. .+|.... +||+||.+.... .|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++.
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~ 204 (329)
T 1htr_B 129 SVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQA 204 (329)
T ss_dssp CCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTEE
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCce
Confidence 53 3443322 999999987544 799999999987 478999999987 67999999999999987
Q ss_pred eeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEE
Q 011922 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDL 416 (475)
Q Consensus 337 l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~ 416 (475)
+..... ..++||||||++++||+++|++|++++.+. + ...+ .+..+|+.. ..+|+|+|+| +|+++
T Consensus 205 ~~~~~~---~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~---~-~~~g--~~~~~C~~~-----~~~P~i~f~f-~g~~~ 269 (329)
T 1htr_B 205 SGWCSE---GCQAIVDTGTSLLTVPQQYMSALLQATGAQ---E-DEYG--QFLVNCNSI-----QNLPSLTFII-NGVEF 269 (329)
T ss_dssp CCTTTT---CEEEEECTTCCSEEEEGGGHHHHHHHHTCE---E-CTTS--CEEECGGGG-----GGSCCEEEEE-TTEEE
T ss_pred eeecCC---CceEEEecCCccEECCHHHHHHHHHHhCCe---e-cCCC--eEEEeCCCc-----ccCCcEEEEE-CCEEE
Confidence 641111 146999999999999999999999998654 2 1222 345678743 3689999999 78999
Q ss_pred EecCCCeEEEeCCCeEEE-EEEEcC---CCCC-eeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 417 ELDVRGTLVVASVSQVCL-GFAVYP---SDTN-SFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 417 ~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~-~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+|++++|+++.. ..|+ +|.... ...+ .||||++|||++|++||++++|||||+++
T Consensus 270 ~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 270 PLPPSSYILSNN--GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EECHHHHEEECS--SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhcccCC--CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 999999998875 3898 677653 1234 89999999999999999999999999864
No 19
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-54 Score=445.45 Aligned_cols=311 Identities=24% Similarity=0.359 Sum_probs=251.8
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS 204 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 204 (475)
.+..|+++|.||||+|++.|+|||||+++||+|.+|..|+ +.|||++|+||+...
T Consensus 11 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~----~~f~~~~SsT~~~~~--------------------- 65 (383)
T 2ewy_A 11 SGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID----TYFDTERSSTYRSKG--------------------- 65 (383)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBS----CCCCGGGCTTCEEEE---------------------
T ss_pred CCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCccc----cCcccccCccceeCC---------------------
Confidence 3457999999999999999999999999999999997774 689999999999864
Q ss_pred CCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCc-----------
Q 011922 205 RECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPV----------- 270 (475)
Q Consensus 205 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~----------- 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++....+ ..+.|+|.....+.| ...+||||||+..+
T Consensus 66 --~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 138 (383)
T 2ewy_A 66 --FDVTVKYTQGS-WTGFVGEDLVTIPKGFNTS----FLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFF 138 (383)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEEETTTEEEE----EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHH
T ss_pred --ceEEEEECCcE-EEEEEEEEEEEECCCccce----eEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHH
Confidence 69999999998 6999999999998643211 127789887666655 26799999999875
Q ss_pred -chhhhcccc-eeEEecCCC-------CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeec
Q 011922 271 -SIITKTKIS-YFSYCLPSP-------YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFS 340 (475)
Q Consensus 271 -Sl~sQ~~~~-~FS~cL~~~-------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~ 340 (475)
+|++|...+ +||+||... ....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.+.++
T Consensus 139 ~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~~~ 214 (383)
T 2ewy_A 139 DSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLNLD 214 (383)
T ss_dssp HHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECCCC
T ss_pred HHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcccc
Confidence 356676555 999998631 235799999999987 589999999987 579999999999999998877
Q ss_pred ccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCC--ccccccccccCCCceeecceEEEEEcCC-----
Q 011922 341 TSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGA--GDILDTCYDLRAYETVVVPKITIHFLGG----- 413 (475)
Q Consensus 341 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg----- 413 (475)
...|...++||||||++++||+++|++|++++.+.+.. +..... ..+..+|++.+......+|+|+|+|.|+
T Consensus 215 ~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~ 293 (383)
T 2ewy_A 215 CREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRS 293 (383)
T ss_dssp TTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-SCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEE
T ss_pred ccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhccc-ccCccccccccccccccCCcccHhhCCcEEEEECCCCCCce
Confidence 66665568999999999999999999999999987431 111110 0235689876544445799999999654
Q ss_pred cEEEecCCCeEEEeC---CCeEEEEE--EEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 414 VDLELDVRGTLVVAS---VSQVCLGF--AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~---~~~~Cl~~--~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
.+++|++++|+++.. .+..|++| .+. .+.||||++|||++|++||++++|||||+++|+
T Consensus 294 ~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 294 FRITILPQLYIQPMMGAGLNYECYRFGISPS---TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp EEEEECHHHHEEEECCCTTCSEEEEESEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred EEEEEChHHheeecccCCCCceeEEEEecCC---CCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 379999999998863 35689864 332 346999999999999999999999999999994
No 20
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=6.7e-55 Score=440.58 Aligned_cols=305 Identities=22% Similarity=0.389 Sum_probs=254.2
Q ss_pred cceeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CccCCCCCCCCCCCCCccccccCCCcc
Q 011922 113 KAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPLFDPSKSKTFSKIPCNSTT 188 (475)
Q Consensus 113 ~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~ 188 (475)
+...+|+.. ..+.+|+++|.||||+|+++|++||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 6 ~~~~~~l~n--~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~----- 76 (341)
T 3k1w_A 6 TTSSVILTN--YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG----- 76 (341)
T ss_dssp BCEEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTS--CCBCGGGCTTCEEEE-----
T ss_pred CCccccceE--ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCC--CCCCCCcCcCeeECC-----
Confidence 346777764 46789999999999999999999999999999999998 38754 899999999998753
Q ss_pred ccCccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecC
Q 011922 189 CKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGL 265 (475)
Q Consensus 189 C~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGL 265 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+ + +.|||++...+. | ...+|||||
T Consensus 77 ------------------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~v-~------~~fg~~~~~~~~~~~~~~~~GilGL 130 (341)
T 3k1w_A 77 ------------------TELTLRYSTGT-VSGFLSQDIITVGGITV-T------QMFGEVTEMPALPFMLAEFDGVVGM 130 (341)
T ss_dssp ------------------EEEEEEETTEE-EEEEEEEEEEEETTEEE-E------EEEEEEEECCHHHHTTCSSSEEEEC
T ss_pred ------------------CEEEEEECCcE-EEEEEEEEEEEECCcee-e------EEEEEEEEccccccccCCcceEEEC
Confidence 69999999998 89999999999999888 8 999999988753 2 368999999
Q ss_pred CCCCcc----------hhhhcccc--eeEEecCCCC----CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEe
Q 011922 266 DRSPVS----------IITKTKIS--YFSYCLPSPY----GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLT 328 (475)
Q Consensus 266 g~~~~S----------l~sQ~~~~--~FS~cL~~~~----~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~ 328 (475)
|+...+ |++|.... +||+||.+.. ...|.|+|||+|++ +.+++.|+|+.. +.+|.|.++
T Consensus 131 g~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~ 206 (341)
T 3k1w_A 131 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMK 206 (341)
T ss_dssp SCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEEC
T ss_pred CchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEe
Confidence 998765 45553333 9999999864 24799999999987 488999999986 679999999
Q ss_pred EEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEE
Q 011922 329 GISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITI 408 (475)
Q Consensus 329 gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 408 (475)
+|+|+++.+..+.. ..+||||||++++||+++|++|.+++.+. + . .. .+..+|. ....+|+|+|
T Consensus 207 ~i~v~~~~~~~~~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~---~-~-~~--g~~~~C~-----~~~~~p~i~f 270 (341)
T 3k1w_A 207 GVSVGSSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAK---K-R-LF--DYVVKCN-----EGPTLPDISF 270 (341)
T ss_dssp CEEETTEEEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---E-C-SS--CEEEEGG-----GGGGCCCEEE
T ss_pred EEEECCEEeecCCC----CEEEEECCCChhcCCHHHHHHHHHHcCCe---e-c-CC--CeEEeCC-----CCCcCCcEEE
Confidence 99999997654332 46999999999999999999999998654 2 1 11 1445565 3347899999
Q ss_pred EEcCCcEEEecCCCeEEEeC--CCeEEE-EEEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 409 HFLGGVDLELDVRGTLVVAS--VSQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 409 ~f~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+| +|+++.|++++|++... .+..|+ +|...+ ...+.||||++|||++|++||++++|||||+++
T Consensus 271 ~f-~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 271 HL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EE-TTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EE-CCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 99 78999999999998753 357898 677642 235689999999999999999999999999974
No 21
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.9e-54 Score=437.40 Aligned_cols=301 Identities=21% Similarity=0.334 Sum_probs=246.3
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCC--CC---------CccCCCCCCCCCCCCCcccccc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKP--CI---------HCFQQRDPLFDPSKSKTFSKIP 183 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~--C~---------~C~~~~~~~fdps~SsT~~~~~ 183 (475)
+.+|+.. ++++|+++|.||||+|++.|++||||+++||+|.. |. .|.. .+.|||++|+||+...
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~~ 77 (342)
T 3pvk_A 3 VPVTLHN---EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQ--KGTYDPSGSSASQDLN 77 (342)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGT--TCCBCGGGCTTCEEEE
T ss_pred cceEEec---CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCC--CCcCCCccCcceeecC
Confidence 4556543 56899999999999999999999999999998543 42 3754 4899999999999874
Q ss_pred CCCccccCccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCcee
Q 011922 184 CNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIM 263 (475)
Q Consensus 184 C~s~~C~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~Gil 263 (475)
|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++... ..+|||
T Consensus 78 -----------------------~~~~i~Yg~gs~~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~----~~~Gil 124 (342)
T 3pvk_A 78 -----------------------TPFKIGYGDGSSSQGTLYKDTVGFGGVSIKN------QVLADVDSTS----IDQGIL 124 (342)
T ss_dssp -----------------------EEEEEECSSSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEES----SSSCEE
T ss_pred -----------------------CeEEEEecCCCeEEEEEEEEEEEECCEEecc------eEEEEEEccC----CCccEE
Confidence 6999999999989999999999999988899 9999999765 579999
Q ss_pred cCCCCCc-------chhhhccc----c--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeE
Q 011922 264 GLDRSPV-------SIITKTKI----S--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTG 329 (475)
Q Consensus 264 GLg~~~~-------Sl~sQ~~~----~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~g 329 (475)
|||+..+ +++.|+.. . +||+||.+.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++
T Consensus 125 GLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~ 200 (342)
T 3pvk_A 125 GVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTS----DRELRISLGS 200 (342)
T ss_dssp ECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEE
T ss_pred EecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCc----cceEEEEEeE
Confidence 9999873 45555433 2 899999886656899999999887 589999999987 5589999999
Q ss_pred EEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEE
Q 011922 330 ISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIH 409 (475)
Q Consensus 330 I~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~ 409 (475)
|+|+++.+..+. ..+||||||++++||+++|++|.+++.+.... ...+...+..+|+ ..|+|+|+
T Consensus 201 i~v~g~~~~~~~-----~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~--~~~~~~~~~~~C~--------~~p~i~f~ 265 (342)
T 3pvk_A 201 VEVSGKTINTDN-----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ--DSNGNSFYEVDCN--------LSGDVVFN 265 (342)
T ss_dssp EEETTEEEEEEE-----EEEEECTTCSSEEECHHHHHHHHHHTTCEEEE--CTTSCEEEEECSC--------CCSEEEEE
T ss_pred EEECCEEecCCC-----ceEEEeCCCCCeecCHHHHHHHHHHcCCeecc--cCCCceEEEEecC--------CCCceEEE
Confidence 999999987642 35999999999999999999999999765321 1111012556675 35999999
Q ss_pred EcCCcEEEecCCCeEEEeC--CC---eEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 410 FLGGVDLELDVRGTLVVAS--VS---QVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 410 f~gg~~~~l~~~~~~~~~~--~~---~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
|.+|++++|++++|+++.. .+ ..|+..... .+.||||++|||++|++||++++|||||+++|+
T Consensus 266 f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~---~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 266 FSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDV---NDANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp ESTTCEEEEEGGGGEEC----------CEEESEEE---CTTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred ECCCCEEEEcHHHheeeccccCCCcCCeeEEEEee---CCCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 9668999999999998731 22 679844433 246999999999999999999999999999995
No 22
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=2.9e-54 Score=444.64 Aligned_cols=310 Identities=22% Similarity=0.358 Sum_probs=251.1
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS 204 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 204 (475)
.+..|+++|.||||+|++.|+|||||+++||+|.+|..|+ +.|||++|+||+...
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~----~~y~~~~SsT~~~~~--------------------- 73 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH----RYYQRQLSSTYRDLR--------------------- 73 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCS----CCCCGGGCTTCEEEE---------------------
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCcccc----CCcCcccCCCceeCC---------------------
Confidence 3568999999999999999999999999999999997663 789999999999864
Q ss_pred CCceeeeecCCCCcEEEEEEEEEEEEec-ccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCc----------
Q 011922 205 RECHFNIAYVDGSGNSGFWATDRMTIQE-ANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPV---------- 270 (475)
Q Consensus 205 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~-~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~---------- 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++ ..++ ..+.|+|.....+.| ...+||||||+..+
T Consensus 74 --~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~~~-----~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~ 145 (395)
T 2qp8_A 74 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVT-----VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 145 (395)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCE-----EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCH
T ss_pred --ceEEEEECCcE-EEEEEEeEEEEECCCCCce-----EEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCH
Confidence 69999999998 58999999999983 3332 126788887665555 36899999999765
Q ss_pred --chhhhcccc-eeEEecCCC----------CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEE
Q 011922 271 --SIITKTKIS-YFSYCLPSP----------YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336 (475)
Q Consensus 271 --Sl~sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~ 336 (475)
+|++|.... +||+||.+. ....|.|+|||+|++ +.+++.|+|+.. ..+|.|.|++|+|+++.
T Consensus 146 ~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~ 221 (395)
T 2qp8_A 146 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQD 221 (395)
T ss_dssp HHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEE
T ss_pred HHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECCEE
Confidence 456666555 999999753 125799999999987 478999999987 67999999999999999
Q ss_pred eeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCC--ccccccccccCCCceeecceEEEEEcCCc
Q 011922 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGA--GDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 337 l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
+.++...|...++||||||++++||+++|++|++++.+.+.. +..... ..+..+|+..+......+|+|+|+|.|+.
T Consensus 222 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~ 300 (395)
T 2qp8_A 222 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV 300 (395)
T ss_dssp CCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT-SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSS
T ss_pred cccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhccc-ccCCccccccccccccccccchHhhCCcEEEEEccCC
Confidence 887766555468999999999999999999999999987431 111110 01246898766544457999999996653
Q ss_pred -----EEEecCCCeEEEeCC----CeEEEE--EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 415 -----DLELDVRGTLVVASV----SQVCLG--FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 415 -----~~~l~~~~~~~~~~~----~~~Cl~--~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+++|++++|+++... ...|++ +.+. .+.||||++|||++|++||++++|||||+++|+
T Consensus 301 ~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 301 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS---STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred CCceEEEEECHHHhEeecccCCCCCceEEEEEecCC---CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 799999999988642 358974 4432 357999999999999999999999999999995
No 23
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=3.5e-54 Score=440.65 Aligned_cols=299 Identities=23% Similarity=0.346 Sum_probs=249.8
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 52 ~~~pl~~--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~--------- 118 (375)
T 1miq_A 52 DVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK--NLYDSSKSKSYEKDG--------- 118 (375)
T ss_dssp BCCCGGG--TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGS--CCBCGGGCTTCEEEE---------
T ss_pred ceEEccc--CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCC--CcCCCccCCceEECC---------
Confidence 3466653 46789999999999999999999999999999999997 48765 899999999998863
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEc----CCCCC--CCCCceecCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRN----SSGDK--SGASGIMGLD 266 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~----~~g~~--~~~~GilGLg 266 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ .|||++. .. .| ...+||||||
T Consensus 119 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~-------~Fg~~~~~~~~~~-~f~~~~~dGilGLg 175 (375)
T 1miq_A 119 --------------TKVDITYGSGT-VKGFFSKDLVTLGHLSMPY-------KFIEVTDTDDLEP-IYSSVEFDGILGLG 175 (375)
T ss_dssp --------------EEEEEEETTEE-EEEEEEEEEEEETTEEEEE-------EEEEEEECGGGTT-HHHHSCCCEEEECS
T ss_pred --------------cEEEEEeCCCe-EEEEEEEEEEEEcCceECc-------EEEEEEecccccc-ccccCCCceEEeCC
Confidence 69999999998 8999999999999765442 7999998 54 33 3689999999
Q ss_pred CCCcch----------hhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEEC
Q 011922 267 RSPVSI----------ITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVG 333 (475)
Q Consensus 267 ~~~~Sl----------~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vg 333 (475)
++.++. ++|.... +||+||++.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ |+||
T Consensus 176 ~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~v~ 250 (375)
T 1miq_A 176 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFG 250 (375)
T ss_dssp SCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EEET
T ss_pred CCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EEEC
Confidence 987653 3443332 999999986546899999999987 488999999986 679999999 9999
Q ss_pred CEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCC
Q 011922 334 GKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGG 413 (475)
Q Consensus 334 g~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 413 (475)
++.+ . ..++||||||++++||+++|++|.+++.+. ++...+ .+..+|+. ..+|+|+|+| +|
T Consensus 251 g~~~----~---~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g--~~~~~C~~------~~~P~i~f~f-~g 311 (375)
T 1miq_A 251 KQTM----E---KANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLP--FYVTTCDN------KEMPTLEFKS-AN 311 (375)
T ss_dssp TEEE----E---EEEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSS--CEEEETTC------TTCCCEEEEC-SS
T ss_pred CEEc----c---cceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCC--eEEEECCC------CCCCcEEEEE-CC
Confidence 9887 1 146999999999999999999999998764 333333 35667874 4689999999 78
Q ss_pred cEEEecCCCeEEEeC--CCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 414 VDLELDVRGTLVVAS--VSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
++++|++++|+++.. +...|+ +|.+.....+.||||++|||++|++||++++|||||+++
T Consensus 312 ~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 312 NTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp CEEEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 999999999999864 346898 888764323689999999999999999999999999864
No 24
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=1.6e-53 Score=447.79 Aligned_cols=317 Identities=22% Similarity=0.388 Sum_probs=251.9
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CccCCCCCCCCCCCCCccccccCCCccccC
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPLFDPSKSKTFSKIPCNSTTCKK 191 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (475)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+...
T Consensus 42 ~~~~l~n--~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~-------- 109 (478)
T 1qdm_A 42 DIVALKN--YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKNG-------- 109 (478)
T ss_dssp CSGGGCC--GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCCC--------
T ss_pred ceEEeEe--ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeCC--------
Confidence 4566653 46789999999999999999999999999999999996 49876 799999999998742
Q ss_pred ccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCC-C--CCCCceecCCCC
Q 011922 192 LRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGD-K--SGASGIMGLDRS 268 (475)
Q Consensus 192 ~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~ 268 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+. | ..++||||||++
T Consensus 110 ---------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~------~~Fg~a~~~~~~~f~~~~~dGIlGLg~~ 167 (478)
T 1qdm_A 110 ---------------KPAAIQYGTGS-IAGYFSEDSVTVGDLVVKD------QEFIEATKEPGITFLVAKFDGILGLGFK 167 (478)
T ss_dssp ---------------CEEEEEETTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEECCBSHHHHCSSSEEEECSCG
T ss_pred ---------------cEEEEEcCCCC-eEEEEEEEEEEECCeEECC------EEEEEEEecCCcccccccccceeccccc
Confidence 58999999998 8999999999999988899 999999987653 2 368999999998
Q ss_pred Ccc----------hhhhcccc--eeEEecCCCC--CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEEC
Q 011922 269 PVS----------IITKTKIS--YFSYCLPSPY--GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVG 333 (475)
Q Consensus 269 ~~S----------l~sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vg 333 (475)
.++ |++|.... +||+||++.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+||
T Consensus 168 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~v~ 243 (478)
T 1qdm_A 168 EISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVLVG 243 (478)
T ss_dssp GGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEEET
T ss_pred ccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEEEC
Confidence 776 34554332 9999998753 34799999999987 478999999987 67999999999999
Q ss_pred CEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHh----------hcc------------ccC---------
Q 011922 334 GKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRM----------KKY------------KRA--------- 382 (475)
Q Consensus 334 g~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~----------~~~------------~~~--------- 382 (475)
++.+.+.... .++||||||++++||+++|++|.+++.+.. .+| +..
T Consensus 244 g~~~~~~~~~---~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC 320 (478)
T 1qdm_A 244 GKSTGFCAGG---CAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLC 320 (478)
T ss_dssp TEECSTTTTC---EEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred CEEEeecCCC---ceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhcccccc
Confidence 9987654332 469999999999999999999999986420 000 000
Q ss_pred --CCC---------------------------------------------------ccccccccccC---------CCce
Q 011922 383 --KGA---------------------------------------------------GDILDTCYDLR---------AYET 400 (475)
Q Consensus 383 --~~~---------------------------------------------------~~~~~~C~~~~---------~~~~ 400 (475)
.+. ....+.|+.++ |...
T Consensus 321 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~ 400 (478)
T 1qdm_A 321 TFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSL 400 (478)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGG
T ss_pred ccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecccc
Confidence 000 00123455443 2223
Q ss_pred eecceEEEEEcCCcEEEecCCCeEEEeCC--CeEEEE-EEEcC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 401 VVVPKITIHFLGGVDLELDVRGTLVVASV--SQVCLG-FAVYP---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 401 ~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl~-~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
..+|+|+|+| ||++++|+|++|++.... ...|++ |...+ ...+.||||++|||++|++||++++|||||++.
T Consensus 401 ~~lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 401 GSMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp TTCCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 4689999999 789999999999998654 358984 66542 134689999999999999999999999999863
No 25
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.5e-53 Score=440.31 Aligned_cols=313 Identities=23% Similarity=0.369 Sum_probs=249.4
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS 204 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 204 (475)
...+|+++|.||||+|+++|+|||||+++||+|.+| |.. ++.|||++|+||+...
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~~--~~~y~~~~SsT~~~~~--------------------- 80 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL--HRYYQRQLSSTYRDLR--------------------- 80 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC--SCCCCGGGCTTCEEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Ccc--cCCcCcccCcccccCC---------------------
Confidence 346899999999999999999999999999999998 432 3799999999999864
Q ss_pred CCceeeeecCCCCcEEEEEEEEEEEEec-ccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcc---------
Q 011922 205 RECHFNIAYVDGSGNSGFWATDRMTIQE-ANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVS--------- 271 (475)
Q Consensus 205 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~-~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S--------- 271 (475)
|.|.+.|++|+ +.|.+++|+|+|++ ..++. .+.|+|.....+.| ...+||||||+..++
T Consensus 81 --~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~-----~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~ 152 (402)
T 3vf3_A 81 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVTV-----RANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 152 (402)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCEE-----EEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCH
T ss_pred --CEEEEEECcEE-EEEEEEEEEEEECCccccce-----eeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcH
Confidence 69999999998 69999999999985 33321 15688887766654 368999999997653
Q ss_pred ---hhhhcccc-eeEEecCCC----------CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEE
Q 011922 272 ---IITKTKIS-YFSYCLPSP----------YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336 (475)
Q Consensus 272 ---l~sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~ 336 (475)
|++|.... +||+||.+. ....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.
T Consensus 153 ~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~ 228 (402)
T 3vf3_A 153 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQD 228 (402)
T ss_dssp HHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETTEE
T ss_pred HHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECCEE
Confidence 44555444 999999742 234799999999987 488999999987 67999999999999999
Q ss_pred eeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCC-CccccccccccCCCceeecceEEEEEcCCc-
Q 011922 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG-AGDILDTCYDLRAYETVVVPKITIHFLGGV- 414 (475)
Q Consensus 337 l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~- 414 (475)
+.++...+....+||||||++++||+++|++|.+++.+.+...+.... ...++.+|+.........+|+|+|+|.|+.
T Consensus 229 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~ 308 (402)
T 3vf3_A 229 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT 308 (402)
T ss_dssp CCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSST
T ss_pred ecccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCC
Confidence 887665554467999999999999999999999999998431111111 012367898766544457999999996543
Q ss_pred ----EEEecCCCeEEEeCCC----eEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 415 ----DLELDVRGTLVVASVS----QVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 415 ----~~~l~~~~~~~~~~~~----~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+++|++++|+++.... ..|++|.... ..+.||||++|||++|++||++++|||||+++|+
T Consensus 309 ~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 309 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp TEEEEEEECHHHHEEECCCGGGTTEEEEEECEEE-ESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred CceEEEEECHHHheehhccCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 5999999999986432 5898643221 2357999999999999999999999999999995
No 26
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.6e-53 Score=443.84 Aligned_cols=300 Identities=22% Similarity=0.352 Sum_probs=248.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+.. ..+.+|+++|.||||+|++.|++||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 128 ~~~~L~n--~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~--~~ydps~SsT~~~~~--------- 194 (453)
T 2bju_A 128 DNIELVD--FQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTK--HLYDSSKSRTYEKDG--------- 194 (453)
T ss_dssp EEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGS--CCBCGGGCTTCEEEE---------
T ss_pred CceeeEe--cCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCC--CcCCCccCCceeECC---------
Confidence 4567653 46789999999999999999999999999999999997 48764 899999999998863
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCC--CC-C--CCCCceecCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSS--GD-K--SGASGIMGLDR 267 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~--g~-~--~~~~GilGLg~ 267 (475)
|.|.+.|++|+ +.|.+++|+|+|++..++ +.|||++... +. | ...+||||||+
T Consensus 195 --------------~~~~i~YgdGs-~~G~~~~Dtv~ig~~~v~-------~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 195 --------------TKVEMNYVSGT-VSGFFSKDLVTVGNLSLP-------YKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp --------------EEEEEECSSSE-EEEEEEEEEEEETTEEEE-------EEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred --------------cEEEEEcCCCC-eEEEEEEEEEEEeCcEEE-------EEEEEEEEecccCccccccCCceeEeccC
Confidence 69999999998 899999999999875432 8999999886 53 2 36899999999
Q ss_pred CCcch----------hhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECC
Q 011922 268 SPVSI----------ITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGG 334 (475)
Q Consensus 268 ~~~Sl----------~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg 334 (475)
+.++. ++|.... +||+||++.+...|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ |+|++
T Consensus 253 ~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~Vgg 327 (453)
T 2bju_A 253 KDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHVGN 327 (453)
T ss_dssp GGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEETT
T ss_pred CcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEECc
Confidence 86653 3443332 999999986556899999999987 488999999987 679999999 99999
Q ss_pred EEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCc
Q 011922 335 KKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 335 ~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
.+ + ...++||||||++++||+++|++|.+++.+. +...+ ..+..+|+. ..+|+|+|+| ||+
T Consensus 328 -~~-~-----~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g-~~~~v~C~~------~~~P~itf~f-gg~ 388 (453)
T 2bju_A 328 -IM-L-----EKANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFL-PFYVTLCNN------SKLPTFEFTS-ENG 388 (453)
T ss_dssp -EE-E-----EEEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTS-SCEEEETTC------TTCCCEEEEC-SSC
T ss_pred -EE-e-----ccccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCC-ceEEEecCC------CCCCcEEEEE-CCE
Confidence 33 2 1256999999999999999999999888652 22222 135667863 4689999999 789
Q ss_pred EEEecCCCeEEEeC--CCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 415 DLELDVRGTLVVAS--VSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 415 ~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+++|++++|+++.. ....|+ +|.+.+...+.||||++|||++|++||++++|||||+++
T Consensus 389 ~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 389 KYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp EEEECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 99999999999865 346898 787764334689999999999999999999999999864
No 27
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.1e-53 Score=425.84 Aligned_cols=302 Identities=23% Similarity=0.309 Sum_probs=245.8
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCC
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGL 195 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 195 (475)
++++.. ...+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+..+.|||++|+ ++..
T Consensus 4 ~v~~~~-~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~------------- 66 (325)
T 1ibq_A 4 SAVTTP-QNNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS------------- 66 (325)
T ss_dssp EEEEEE-CTTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT-------------
T ss_pred eEEeEE-cCCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC-------------
Confidence 344443 34678999999999 999999999999999999999987654556899999998 4421
Q ss_pred CCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcch
Q 011922 196 FPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVSI 272 (475)
Q Consensus 196 ~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl 272 (475)
+ |.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||+..++.
T Consensus 67 -----~-----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (325)
T 1ibq_A 67 -----G-----YSWDISYGDGSSASGDVYRDTVTVGGVTTNK------QAVEAASKISSEFVQDTANDGLLGLAFSSINT 130 (325)
T ss_dssp -----T-----CBEEEECSSSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHTSTTCCEEEECSCGGGCC
T ss_pred -----C-----CEEEEEeCCCCEEEEEEEEeEEEECCEEEcc------eEEEEEEecCccccccCCCceEEEeCcccccc
Confidence 2 6999999999989999999999999988899 9999999876533 3689999999976553
Q ss_pred ---------hhhccc----ceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEee
Q 011922 273 ---------ITKTKI----SYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLP 338 (475)
Q Consensus 273 ---------~sQ~~~----~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~ 338 (475)
++|+.. .+||+||.+. ..|.|+|||+|++ +.+++.|+|+.. ...+|.|++++|+|+++.+.
T Consensus 131 ~~p~~~~~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~~~~~ 205 (325)
T 1ibq_A 131 VQPKAQTTFFDTVKSQLDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADS---SQGYWGFSTDGYSIGDGSSS 205 (325)
T ss_dssp CBSSCCCCHHHHHGGGSSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBC---TTSSCEEEECEEEETTSCCB
T ss_pred cCcCCCCCHHHHHHHhcCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCC---CCceEEEEECcEEECCeecc
Confidence 344432 3999999874 4799999999987 589999999985 26789999999999998753
Q ss_pred ecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEe
Q 011922 339 FSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLEL 418 (475)
Q Consensus 339 ~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 418 (475)
... .++||||||++++||+++|++|.+++.++. +....+ .+..+|+ ..+|+|+|+| ||++++|
T Consensus 206 --~~~---~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g--~~~~~C~-------~~~P~i~f~f-gg~~~~i 268 (325)
T 1ibq_A 206 --SSG---FSAIADTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAG--GYVFSCS-------TDLPDFTVVI-GDYKAVV 268 (325)
T ss_dssp --SCC---EEEEECTTCCSEEECHHHHHHHHTTSTTCB--CCSSSS--SCEEETT-------CCCCCEEEEE-TTEEEEE
T ss_pred --CCC---ceEEEeCCCCcEeCCHHHHHHHHHhCCCce--EcCcCC--eEEEEcC-------CCCCcEEEEE-CCEEEEE
Confidence 222 469999999999999999999999985431 222222 3445685 2689999999 8999999
Q ss_pred cCCCeEEEeC--CCeEEEE-EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 419 DVRGTLVVAS--VSQVCLG-FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 419 ~~~~~~~~~~--~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
++++|++... +...|++ |.+. +..+.||||++|||++|++||++++|||||+++
T Consensus 269 ~~~~~~~~~~~~~~~~C~~~i~~~-~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 269 PGKYINYAPVSTGSSTCYGGIQSN-SGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp CHHHHEEEESSTTCSEEEESEEEC-TTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CHHHhcccccCCCCCeEEEEEEcC-CCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 9999998753 3478996 5554 335689999999999999999999999999874
No 28
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=2.2e-53 Score=445.70 Aligned_cols=312 Identities=22% Similarity=0.369 Sum_probs=252.9
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS 204 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 204 (475)
.+..|+++|.||||+|+++|+|||||+++||+|.+| |.. ++.|||++|+||+...
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~~--~~~y~~~~SsT~~~~~--------------------- 126 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL--HRYYQRQLSSTYRDLR--------------------- 126 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC--SCCCCGGGCTTCEEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--ccc--CCcccCCCCCCcccCC---------------------
Confidence 446899999999999999999999999999999998 543 4799999999999864
Q ss_pred CCceeeeecCCCCcEEEEEEEEEEEEecc-cccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcc---------
Q 011922 205 RECHFNIAYVDGSGNSGFWATDRMTIQEA-NIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVS--------- 271 (475)
Q Consensus 205 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~-~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S--------- 271 (475)
|.|.+.|++|+ +.|.+++|+|+|++. .+. .++.|+|.....+.| ...+||||||+..++
T Consensus 127 --~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~~~-----~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~ 198 (455)
T 3lpj_A 127 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVT-----VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 198 (455)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCE-----EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCH
T ss_pred --ccEEEEeCCeE-EEEEEEEEEEEECCCccee-----eEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcH
Confidence 69999999998 599999999999853 221 126789988776655 368999999997654
Q ss_pred ---hhhhcccc-eeEEecCCC----------CCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEE
Q 011922 272 ---IITKTKIS-YFSYCLPSP----------YGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKK 336 (475)
Q Consensus 272 ---l~sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~ 336 (475)
|++|.... +||+||.+. ....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.
T Consensus 199 ~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~ 274 (455)
T 3lpj_A 199 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQD 274 (455)
T ss_dssp HHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEE
T ss_pred HHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECCEE
Confidence 44555554 999999753 234799999999987 488999999987 68999999999999999
Q ss_pred eeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCC--CccccccccccCCCceeecceEEEEEcCCc
Q 011922 337 LPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKG--AGDILDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 337 l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
+.++...+....+||||||++++||+++|++|.+++.+.+.. ..... +..++.+|+.........+|+|+|+|.|+.
T Consensus 275 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~-~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~ 353 (455)
T 3lpj_A 275 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV 353 (455)
T ss_dssp CCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTT-SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSS
T ss_pred ccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccc-cccCcccccCcceecccccCCchhcCCcEEEEEcCCC
Confidence 887765554467999999999999999999999999998531 11111 012367899776544456999999996553
Q ss_pred -----EEEecCCCeEEEeCCC----eEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 415 -----DLELDVRGTLVVASVS----QVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 415 -----~~~l~~~~~~~~~~~~----~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
+++|++++|+++.... ..|++|.... ..+.||||++|||++|++||++++|||||+++|+
T Consensus 354 ~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 354 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE-ESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred cCceEEEEECHHHheEeccCCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 5999999999986432 5899753321 2457999999999999999999999999999995
No 29
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=2.7e-53 Score=425.89 Aligned_cols=294 Identities=20% Similarity=0.315 Sum_probs=242.2
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCC
Q 011922 124 VSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCN 203 (475)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 203 (475)
..+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+..+.|||++|+ ++..
T Consensus 12 ~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~--------------------- 67 (323)
T 1izd_A 12 SNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID--------------------- 67 (323)
T ss_dssp GGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE---------------------
T ss_pred CCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC---------------------
Confidence 3568899999999 899999999999999999999987544556899999999 5432
Q ss_pred CCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcch--------
Q 011922 204 SRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVSI-------- 272 (475)
Q Consensus 204 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl-------- 272 (475)
.|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||++.++.
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~ 139 (323)
T 1izd_A 68 --GATWSISYGDGSSASGDVYKDKVTVGGVSYDS------QAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKT 139 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCC
T ss_pred --CCeEEEEcCCCCeEEEEEEEEEEEECCEEECc------eEEEEEEeccccccccCCCceEEecCcccccccCCCCCCC
Confidence 16999999999988999999999999988899 9999999876543 3689999999986553
Q ss_pred -h----hhcccceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCC
Q 011922 273 -I----TKTKISYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTK 346 (475)
Q Consensus 273 -~----sQ~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~ 346 (475)
+ +|+...+||+||.+. ..|.|+|||+|++ +.+++.|+|+.. ...+|.|++++|+|++ .+. ...
T Consensus 140 ~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~-~~~--~~~--- 208 (323)
T 1izd_A 140 FFDNVKSSLSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDN---SQGFWGFTADGYSIGS-DSS--SDS--- 208 (323)
T ss_dssp HHHHHGGGSSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBC---TTSSCEEEESEEEETT-EEE--CCC---
T ss_pred HHHHHHHhccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCC---CCceEEEEECeEEECC-ccc--CCC---
Confidence 2 343333999999874 4799999999987 488999999984 2678999999999999 543 222
Q ss_pred CCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEE
Q 011922 347 LSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVV 426 (475)
Q Consensus 347 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 426 (475)
.++||||||++++||+++|++|.+++.++ .+....+ .+..+|+ ..+|+|+|+| ||++++|++++|++.
T Consensus 209 ~~aiiDSGTs~~~lp~~~~~~i~~~i~ga--~~~~~~g--~~~~~C~-------~~~P~i~f~f-gg~~~~i~~~~~~~~ 276 (323)
T 1izd_A 209 ITGIADTGTTLLLLDDSIVDAYYEQVNGA--SYDSSQG--GYVFPSS-------ASLPDFSVTI-GDYTATVPGEYISFA 276 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTC--EEETTTT--EEEEETT-------CCCCCEEEEE-TTEEEEECHHHHEEE
T ss_pred ceEEEeCCCcceeCCHHHHHHHHHhCCCc--EEcCcCC--EEEEECC-------CCCceEEEEE-CCEEEecCHHHeEEe
Confidence 46999999999999999999999988543 1222222 2344575 2689999999 899999999999988
Q ss_pred eCCCeEEEE-EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 427 ASVSQVCLG-FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 427 ~~~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
..++..|++ |.+.+ ..+.||||++|||++|++||++++|||||+++
T Consensus 277 ~~~~~~C~~~i~~~~-~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 277 DVGNGQTFGGIQSNS-GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp ECSTTEEEESEEECT-TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCCCCeEEEEEEcCC-CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 655678996 66652 35689999999999999999999999999864
No 30
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=2.5e-53 Score=426.15 Aligned_cols=293 Identities=21% Similarity=0.332 Sum_probs=240.7
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCC
Q 011922 124 VSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCN 203 (475)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 203 (475)
..+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+..+.|||++|+ ++..
T Consensus 12 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~--------------------- 67 (323)
T 1bxo_A 12 ANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS--------------------- 67 (323)
T ss_dssp GGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE---------------------
T ss_pred CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC---------------------
Confidence 4678999999999 999999999999999999999987654556899999998 5532
Q ss_pred CCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcch--------
Q 011922 204 SRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVSI-------- 272 (475)
Q Consensus 204 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl-------- 272 (475)
.|.|.+.|++|+.+.|.+++|+|+|++..+++ +.|||++...+.+ ...+||||||+..++.
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~------~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 139 (323)
T 1bxo_A 68 --GYTWSISYGDGSSASGNVFTDSVTVGGVTAHG------QAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTT 139 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCC
T ss_pred --CCeEEEEeCCCCeEEEEEEEEEEEECCEEECc------EEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCC
Confidence 17999999999988999999999999988899 9999999876533 3689999999976543
Q ss_pred -h----hhcccceeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCC
Q 011922 273 -I----TKTKISYFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTK 346 (475)
Q Consensus 273 -~----sQ~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~ 346 (475)
+ +|+...+||+||.+. ..|.|+|||+|++ +.+++.|+|+... ..+|.|++++|+|++ . . ...
T Consensus 140 ~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~-~--~~~--- 207 (323)
T 1bxo_A 140 FFDTVKSSLAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS-Q-S--GDG--- 207 (323)
T ss_dssp HHHHHGGGBSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT-E-E--EEE---
T ss_pred HHHHHHHhcCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC-c-c--CCC---
Confidence 2 343233999999863 4799999999987 5899999999852 578999999999999 2 1 111
Q ss_pred CCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEE
Q 011922 347 LSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVV 426 (475)
Q Consensus 347 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 426 (475)
..+||||||++++||+++|++|.+++.++ .+....+ .+..+|+ ..+|+|+|+| ||++++|++++|++.
T Consensus 208 ~~aiiDSGTs~~~lP~~~~~~l~~~i~~a--~~~~~~g--~~~~~C~-------~~~P~i~f~f-gg~~~~l~~~~~~~~ 275 (323)
T 1bxo_A 208 FSGIADTGTTLLLLDDSVVSQYYSQVSGA--QQDSNAG--GYVFDCS-------TNLPDFSVSI-SGYTATVPGSLINYG 275 (323)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHTTSTTC--EEETTTT--EEEECTT-------CCCCCEEEEE-TTEEEEECHHHHEEE
T ss_pred ceEEEeCCCCceeCCHHHHHHHHHhCCCc--eEcCcCC--EEEEECC-------CCCceEEEEE-CCEEEEECHHHeEEe
Confidence 45999999999999999999999998543 1232222 3345685 2689999999 899999999999987
Q ss_pred eC-CCeEEEE-EEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 427 AS-VSQVCLG-FAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 427 ~~-~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
.. ....|++ |.+. +..+.||||++|||++|++||++++|||||+++
T Consensus 276 ~~~~~~~C~~~i~~~-~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 276 PSGDGSTCLGGIQSN-SGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp ECSSSSCEEESEEEC-TTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ccCCCCeEEEEEECC-CCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 63 3478996 6654 245689999999999999999999999999974
No 31
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=5.2e-53 Score=425.07 Aligned_cols=302 Identities=16% Similarity=0.254 Sum_probs=247.7
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+.. ..+.+|+++|.|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++| ||+...
T Consensus 7 ~~~~l~n--~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~--------- 72 (330)
T 1yg9_A 7 LYKLVHV--FINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG--------- 72 (330)
T ss_dssp SCSCEEE--EECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE---------
T ss_pred eEeeeec--CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC---------
Confidence 4456553 4567899999999 89999999999999999999998 495444589999999 998753
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC--CCCCceecCCCCCc
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK--SGASGIMGLDRSPV 270 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~~ 270 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++.....| ...+||||||++.+
T Consensus 73 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~~~------~~fg~~~~~~~~f~~~~~~GilGLg~~~~ 131 (330)
T 1yg9_A 73 --------------NVQVKFFDTGS-AVGRGIEDSLTISQLTTSQ------QDIVLADELSQEVCILSADVVVGIAAPGC 131 (330)
T ss_dssp --------------EEEEEETTTEE-EEEEEEEEEEEETTEEEEE------EEEEEEEEECTHHHHTTCSEEEECSCTTS
T ss_pred --------------CEEEEEECCce-EEEEEEEEEEEECCEEEcC------eEEEEEEEcccccccccCceEEEcCcchh
Confidence 58999999998 4999999999999988898 9999999883333 26899999999887
Q ss_pred c-----------hhhhcccc-eeEEecCCCCCC--cceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCE
Q 011922 271 S-----------IITKTKIS-YFSYCLPSPYGS--RGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGK 335 (475)
Q Consensus 271 S-----------l~sQ~~~~-~FS~cL~~~~~~--~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~ 335 (475)
+ |++|.... +||+||.+..+. .|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++
T Consensus 132 s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~ 207 (330)
T 1yg9_A 132 PNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIGDT 207 (330)
T ss_dssp CCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEETTE
T ss_pred ccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEECCE
Confidence 7 34442223 999999876333 799999999987 488999999986 6799999999999998
Q ss_pred EeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccc-cccccccCCCceeecceEEEEEcCCc
Q 011922 336 KLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDI-LDTCYDLRAYETVVVPKITIHFLGGV 414 (475)
Q Consensus 336 ~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~P~i~~~f~gg~ 414 (475)
.+. .. ...+||||||++++||+++|++|++++++. +.. .+...+ ..+|+. ...+|+|+|+| ||+
T Consensus 208 ~~~--~~---~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~-~g~~~~~~~~C~~-----~~~~p~i~f~f-gg~ 272 (330)
T 1yg9_A 208 TVA--PA---GTQAIIDTSKAIIVGPKAYVNPINEAIGCV---VEK-TTTRRICKLDCSK-----IPSLPDVTFVI-NGR 272 (330)
T ss_dssp EEE--CT---TCEEEECTTCSSEEEEHHHHHHHHHHHTCE---EEE-CSSCEEEEECGGG-----GGGSCCEEEEE-TTE
T ss_pred EEc--CC---CcEEEEecCCccccCCHHHHHHHHHHhCCc---ccC-CCceEEEEEECCC-----ccccCcEEEEE-CCE
Confidence 865 11 146999999999999999999999998654 221 110123 445753 34689999999 899
Q ss_pred EEEecCCCeEEEeCCCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 415 DLELDVRGTLVVASVSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 415 ~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
+++|++++|+++. +..|+ +|.+. ...+.||||++|||++|++||++++|||||+++
T Consensus 273 ~~~l~~~~y~~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 273 NFNISSQYYIQQN--GNLCYSGFQPC-GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EEEECHHHHEEEE--TTEEEESEEEE-TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhcccC--CCcEEEEEEeC-CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9999999999887 56898 67765 234679999999999999999999999999864
No 32
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=2.9e-52 Score=434.73 Aligned_cols=299 Identities=20% Similarity=0.314 Sum_probs=246.9
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
..+|+.. ..+.+|+++|.||||+|++.|++||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 127 ~~~pL~n--~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~--~~ydps~SsT~~~~~--------- 193 (451)
T 3qvc_A 127 DNVELKD--LANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESK--NHYDSSKSKTYEKDD--------- 193 (451)
T ss_dssp CCCCGGG--GBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEEE---------
T ss_pred Cccceee--cCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCC--CCCCCCCCcccccCC---------
Confidence 4566653 46789999999999999999999999999999999996 49655 899999999998753
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEc----CCCCCC--CCCceecCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRN----SSGDKS--GASGIMGLD 266 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~----~~g~~~--~~~GilGLg 266 (475)
|.|.+.|+||+ +.|.+++|+|+|++..++ +.|||++. ..+ |. ..+||||||
T Consensus 194 --------------~~f~i~YgdGs-~~G~~~~Dtv~igg~~v~-------~~Fg~a~~t~~~~~~-f~~~~~dGILGLg 250 (451)
T 3qvc_A 194 --------------TPVKLTSKAGT-ISGIFSKDLVTIGKLSVP-------YKFIEMTEIVGFEPF-YSESDVDGVFGLG 250 (451)
T ss_dssp --------------EEEEEECSSEE-EEEEEEEEEEEETTEEEE-------EEEEEEEEEEECTTH-HHHSCCCEEEECS
T ss_pred --------------CEEEEEECCCE-EEEEEEEEEEEECCEEEE-------EEEEEEEeccccCCC-ccCCCCCEEEecC
Confidence 69999999998 999999999999875433 89999998 655 42 679999999
Q ss_pred CCCcc----------hhhhcccc--eeEEecCCCCCCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEEC
Q 011922 267 RSPVS----------IITKTKIS--YFSYCLPSPYGSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVG 333 (475)
Q Consensus 267 ~~~~S----------l~sQ~~~~--~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vg 333 (475)
++.++ |.+|.... +||+||.+.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ |+||
T Consensus 251 ~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~Vg 325 (451)
T 3qvc_A 251 WKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VHFG 325 (451)
T ss_dssp SBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EEET
T ss_pred CCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EEEC
Confidence 97654 44453332 999999987666899999999988 488999999986 689999999 9999
Q ss_pred CEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCC
Q 011922 334 GKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGG 413 (475)
Q Consensus 334 g~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 413 (475)
++ .. . ...+||||||++++||++++++|.+++.+. +....+ .+..+|. ...+|+|+|+| ||
T Consensus 326 g~-~~--~----~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~---~~~~~g--~y~v~C~------~~~~P~itf~f-gg 386 (451)
T 3qvc_A 326 NV-SS--K----KANVILDSATSVITVPTEFFNQFVESASVF---KVPFLS--LYVTTCG------NTKLPTLEYRS-PN 386 (451)
T ss_dssp TE-EE--E----EEEEEECTTBSSEEECHHHHHHHHTTTTCE---ECTTSS--CEEEETT------CTTCCCEEEEE-TT
T ss_pred Cc-cC--C----CceEEEeCCCccccCCHHHHHHHHHHcCCe---ecCCCC--eEEeeCC------cCcCCcEEEEE-CC
Confidence 98 11 1 145999999999999999999999998654 222222 3445664 34689999999 78
Q ss_pred cEEEecCCCeEEEeC--CCeEEE-EEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 414 VDLELDVRGTLVVAS--VSQVCL-GFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 414 ~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
.+++|++++|+++.. .+..|+ +|.+.+...+.||||++|||++|++||.+++|||||+++
T Consensus 387 ~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 387 KVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEEEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999999999864 356898 666653225789999999999999999999999999974
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=6.3e-52 Score=418.85 Aligned_cols=297 Identities=23% Similarity=0.338 Sum_probs=240.1
Q ss_pred eeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccC
Q 011922 115 FTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRG 194 (475)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (475)
.++|+.. .+.+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++..
T Consensus 3 ~~~~l~n---~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~~------------- 56 (340)
T 1wkr_A 3 GSVPATN---QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSATS------------- 56 (340)
T ss_dssp EEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEEE-------------
T ss_pred ccEeeec---cCcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCccccC-------------
Confidence 3577764 2468999999999999999999999999999875 4799999886432
Q ss_pred CCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCCCCCCceecCCCCCcch--
Q 011922 195 LFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSI-- 272 (475)
Q Consensus 195 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl-- 272 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ |...+||||||+..+++
T Consensus 57 ------------~~~~i~Yg~Gs-~~G~~~~Dtv~~g~~~v~~------~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~ 116 (340)
T 1wkr_A 57 ------------DKVSVTYGSGS-FSGTEYTDTVTLGSLTIPK------QSIGVASRDSG-FDGVDGILGVGPVDLTVGT 116 (340)
T ss_dssp ------------EEEEEECSSCE-EEEEEEEEEEEETTEEEEE------EEEEEEEEEES-CTTCSEEEECSCGGGGTTS
T ss_pred ------------ceEEEEECCcE-EEEEEEEEEEEECCEEEcc------eEEEEEEccCC-CcCCCcEEECCcccccccc
Confidence 69999999998 8999999999999988899 99999999766 55789999999977653
Q ss_pred ------------hhhc----ccc--eeEEecCCCC---CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEE
Q 011922 273 ------------ITKT----KIS--YFSYCLPSPY---GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGI 330 (475)
Q Consensus 273 ------------~sQ~----~~~--~FS~cL~~~~---~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI 330 (475)
+.++ ... +||+||.+.. ...|.|+|||+|++ +.+++.|+|+..++....+|.|. ++|
T Consensus 117 ~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i 195 (340)
T 1wkr_A 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSI 195 (340)
T ss_dssp EESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEE
T ss_pred ccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeE
Confidence 3333 222 9999998642 24799999999987 58999999999865446799999 999
Q ss_pred EECC-EEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEE
Q 011922 331 SVGG-KKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIH 409 (475)
Q Consensus 331 ~vgg-~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~ 409 (475)
+|++ +.+..+ +.+||||||++++||+++|++|.+++++. +....+ .+..+|.. ...+|+|+|+
T Consensus 196 ~v~~~~~l~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~a~---~~~~~g--~~~~~C~~-----~~~~p~i~f~ 259 (340)
T 1wkr_A 196 RYGSSTSILSS------TAGIVDTGTTLTLIASDAFAKYKKATGAV---ADNNTG--LLRLTTAQ-----YANLQSLFFT 259 (340)
T ss_dssp EETTTEEEEEE------EEEEECTTBCSEEECHHHHHHHHHHHTCE---ECTTTS--SEEECHHH-----HHTCCCEEEE
T ss_pred EECCCeEccCC------CeEEEeCCcccccCCHHHHHHHHHhhCCE---EcCCCC--eEEeeccc-----cccCCcEEEE
Confidence 9998 877522 45999999999999999999998888654 222222 33456752 3468999999
Q ss_pred EcCCcEEEecCCCeEEEeC-------CCeEEE-EEEEcCC---CCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922 410 FLGGVDLELDVRGTLVVAS-------VSQVCL-GFAVYPS---DTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475 (475)
Q Consensus 410 f~gg~~~~l~~~~~~~~~~-------~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~ 475 (475)
| +|.++.|++++|+++.. ....|+ +|.+... ....||||++|||++|++||++++|||||+++|+
T Consensus 260 f-~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 260 I-GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp E-TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred E-CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 9 78999999999997642 124565 6766421 2346999999999999999999999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=7e-42 Score=328.50 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=187.1
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CccCCCCCCCCCCCCCccccccCCCccccCc
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKL 192 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (475)
.+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 4 ~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~--------- 70 (239)
T 1b5f_A 4 VVALTN--DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKENG--------- 70 (239)
T ss_dssp EEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred eeeeee--cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeCC---------
Confidence 466654 46789999999999999999999999999999999997 39765 799999999998763
Q ss_pred cCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCC-CC--CCCCceecCCCCC
Q 011922 193 RGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSG-DK--SGASGIMGLDRSP 269 (475)
Q Consensus 193 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~ 269 (475)
|.|.+.|++|+ +.|.+++|+|+|++..+++ +.|||++...+ .| ..++||||||+..
T Consensus 71 --------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v~~------~~fg~~~~~~~~~f~~~~~~GilGLg~~~ 129 (239)
T 1b5f_A 71 --------------TFGAIIYGTGS-ITGFFSQDSVTIGDLVVKE------QDFIEATDEADNVFLHRLFDGILGLSFQT 129 (239)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEEETTEEEEE------EEEEEEEEECHHHHTTCSCCEEEECSCCS
T ss_pred --------------cEEEEEECCCc-EEEEEEEEEEEECCcEEcc------EEEEEEEeccCccccccCcceEEecCccc
Confidence 68999999998 7999999999999988888 99999998764 22 3689999999998
Q ss_pred cc------hhhhcccc--eeEEecCCCC--CCcceEEecCCCCc-CCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEee
Q 011922 270 VS------IITKTKIS--YFSYCLPSPY--GSRGYITFGKRNTV-KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLP 338 (475)
Q Consensus 270 ~S------l~sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~ 338 (475)
++ |++|.... +||+||++.. ...|.|+||++|++ +.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 130 ~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 205 (239)
T 1b5f_A 130 ISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTG 205 (239)
T ss_dssp SSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECC
T ss_pred cccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEec
Confidence 76 55665433 9999999753 35799999999987 478999999987 6799999999999999876
Q ss_pred ecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHH
Q 011922 339 FSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRK 374 (475)
Q Consensus 339 ~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~ 374 (475)
+.... .++||||||++++||+++|++|.+++++
T Consensus 206 ~~~~~---~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 206 FCAPG---CQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp TTTTC---EEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred ccCCC---CEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 54332 4699999999999999999999998753
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=3.1e-35 Score=282.48 Aligned_cols=210 Identities=19% Similarity=0.338 Sum_probs=168.8
Q ss_pred EEEEeEEcCCC-CCC--CCCceecCCCCCcch----------hhhcccc--eeEEecCCCCCC--cceEEecCCCCc-CC
Q 011922 244 FLLGCIRNSSG-DKS--GASGIMGLDRSPVSI----------ITKTKIS--YFSYCLPSPYGS--RGYITFGKRNTV-KT 305 (475)
Q Consensus 244 ~~FGc~~~~~g-~~~--~~~GilGLg~~~~Sl----------~sQ~~~~--~FS~cL~~~~~~--~G~L~fGg~d~~-~~ 305 (475)
+.|||++...+ .|. ..+||||||++.++. ++|.... +||+||.+.... .|.|+|||+|++ +.
T Consensus 8 ~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~ 87 (241)
T 1lya_B 8 QVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYK 87 (241)
T ss_dssp EEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCGGGEE
T ss_pred eEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcCHHHcC
Confidence 99999999876 343 689999999987652 3443222 999999986543 899999999987 47
Q ss_pred CCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhccccCCCC
Q 011922 306 KFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGA 385 (475)
Q Consensus 306 ~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~ 385 (475)
+++.|+|+.. +.+|.|.+++|+|+++.+... . ...+||||||++++||+++|++|.+++++. +. ..+
T Consensus 88 g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~-~---~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~---~~-~~g- 154 (241)
T 1lya_B 88 GSLSYLNVTR----KAYWQVHLDQVEVASGLTLCK-E---GCEAIVDTGTSLMVGPVDEVRELQKAIGAV---PL-IQG- 154 (241)
T ss_dssp EEEEEEECSS----BTTBEEEEEEEEETTSCEEST-T---CEEEEECTTCSSEEECHHHHHHHHHHHTCE---EE-ETT-
T ss_pred CceEEEECcc----ccEEEEEEeEEEECCeeEecc-C---CCEEEEECCCccccCCHHHHHHHHHHhCCe---ec-cCC-
Confidence 8999999986 679999999999999875322 1 146999999999999999999999998654 22 122
Q ss_pred ccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCC--CeEEE-EEEEcC---CCCCeeeechhhhcceEEE
Q 011922 386 GDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASV--SQVCL-GFAVYP---SDTNSFLLGNVQQRGHEVH 459 (475)
Q Consensus 386 ~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vv 459 (475)
.+..+|+. ...+|+|+|+| +|++++|++++|++.... ...|+ +|.+.. ...+.||||++|||++|++
T Consensus 155 -~~~~~C~~-----~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~v 227 (241)
T 1lya_B 155 -EYMIPCEK-----VSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTV 227 (241)
T ss_dssp -EEEEEGGG-----GGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEE
T ss_pred -cEEEECCC-----CccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEE
Confidence 34556864 34689999999 889999999999998643 46898 587653 1356899999999999999
Q ss_pred EECCCCEEEEeeCC
Q 011922 460 YDVAGRRLGFGPGN 473 (475)
Q Consensus 460 fD~~~~~iGFa~~~ 473 (475)
||++++|||||+++
T Consensus 228 fD~~~~~igfA~~~ 241 (241)
T 1lya_B 228 FDRDNNRVGFAEAA 241 (241)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EECCCCEEEEEEcC
Confidence 99999999999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.88 E-value=1.1e-22 Score=166.90 Aligned_cols=89 Identities=29% Similarity=0.535 Sum_probs=79.8
Q ss_pred eeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CccCCCCCCCCCCCCCccccccCCCccccC
Q 011922 116 TFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPLFDPSKSKTFSKIPCNSTTCKK 191 (475)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (475)
.+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 4 ~~~l~n--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~--~~y~p~~SsT~~~~~-------- 71 (97)
T 1lya_A 4 PEVLKN--YMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH--HKYNSDKSSTYVKNG-------- 71 (97)
T ss_dssp EEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred eEeeEE--CCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC--CCCCchhCCCceeCC--------
Confidence 456653 46789999999999999999999999999999999997 49765 899999999999863
Q ss_pred ccCCCCCCCCCCCCCceeeeecCCCCcEEEEEEEEEEEEec
Q 011922 192 LRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQE 232 (475)
Q Consensus 192 ~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~ 232 (475)
|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 72 ---------------~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 ---------------TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ---------------EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred ---------------CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 69999999998 89999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.60 E-value=1.2e-15 Score=122.32 Aligned_cols=73 Identities=19% Similarity=0.384 Sum_probs=61.7
Q ss_pred eeecceEEEEEcCCcEEEecCCCeEEEeCC--CeEEE-EEEEcC--CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922 400 TVVVPKITIHFLGGVDLELDVRGTLVVASV--SQVCL-GFAVYP--SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN 473 (475)
Q Consensus 400 ~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~--~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~ 473 (475)
...+|+|+|+| ||++++|++++|++.... ...|+ +|.+.+ ...+.||||++|||++|++||.+++|||||+++
T Consensus 10 ~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA~~~ 87 (87)
T 1b5f_B 10 LSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 87 (87)
T ss_dssp GGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEEEEEcC
Confidence 34789999999 789999999999988643 46898 577643 234689999999999999999999999999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=90.66 E-value=0.54 Score=40.17 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred eeeechhhhcceEEEEECCCCEEEEe
Q 011922 445 SFLLGNVQQRGHEVHYDVAGRRLGFG 470 (475)
Q Consensus 445 ~~IlG~~fl~~~~vvfD~~~~~iGFa 470 (475)
..|||..||+.+-+..|+.+++|-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 48999999999999999999999885
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=89.81 E-value=0.73 Score=39.66 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=62.3
Q ss_pred eEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHHHHHHHHHHhhc-cc-cCCCCccccccccccCCCc
Q 011922 322 YYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKK-YK-RAKGAGDILDTCYDLRAYE 399 (475)
Q Consensus 322 ~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~-~~-~~~~~~~~~~~C~~~~~~~ 399 (475)
.++|+ ..|+|+.+. +++|||++.+.++.+..+.+- +...... +. .+.+ .. ...+
T Consensus 24 ~l~v~---~~Ing~~v~----------~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g-~G-~~~~------- 79 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------AFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKG-VG-TQRI------- 79 (148)
T ss_dssp CCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC-----CEE-------
T ss_pred EEEEE---EEECCEEEE----------EEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEc-CC-ccEE-------
Confidence 45555 347888643 899999999999998888761 1100000 00 0111 00 0001
Q ss_pred eeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEEcCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011922 400 TVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGP 471 (475)
Q Consensus 400 ~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~ 471 (475)
.-.++...+.+ |+..+ .|-+++-. ...-..|||.-+|+.+-.+.|++++++-|..
T Consensus 80 ~g~v~~~~I~I-g~~~~---------------~~~~~Vle-~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 80 IGRVHLAQIQI-EGDFL---------------QCSFSILE-DQPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp EEEEEEEEEEE-TTEEE---------------EEEEEEET-TCSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred EEEEEEEEEEE-CCEEE---------------EEEEEEeC-CCCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 11233455555 44321 13222222 1223479999999999999999999998865
No 40
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=83.19 E-value=1.1 Score=36.13 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEe
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQ 156 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~ 156 (475)
-++.|.|| .|.+.+++|||.|++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 46889999 899999999999999987
No 41
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=82.63 E-value=1.4 Score=35.04 Aligned_cols=29 Identities=34% Similarity=0.365 Sum_probs=25.0
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
=++.|.|| .|.+.+++|||.|++-+.-..
T Consensus 9 P~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~ 37 (99)
T 2hs1_A 9 PLVTIKIG--GQLKEALLDTGADDTIIEEMS 37 (99)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSEEESCCS
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEeccc
Confidence 35789999 899999999999999987543
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=78.71 E-value=2.3 Score=33.77 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=24.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011922 130 YTVVAIGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 130 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
++.+.|| +|.+.+++|||.|++-+.-..
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5789999 999999999999999996543
No 43
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=77.16 E-value=2.1 Score=36.35 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQC 157 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c 157 (475)
..+.+++++.|+ ++++.+++|||++.+-+.-
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 557799999999 8999999999999988853
No 44
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=73.43 E-value=2.9 Score=34.29 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
=++ |.|| .|.+.+++|||.|++-+.-.
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 345 9999 89999999999999988743
No 45
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=72.59 E-value=3.1 Score=33.81 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=25.7
Q ss_pred EEEEEeC---CCCceEEEEEEcCCCceeEeCCCC
Q 011922 130 YTVVAIG---KPKQYVSLLLDTGSDVTWTQCKPC 160 (475)
Q Consensus 130 ~~~v~iG---tP~q~~~vi~DTGS~~~Wv~c~~C 160 (475)
.+.|.|| +|+|....++|||.|++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4666666 789999999999999999986554
No 46
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=68.23 E-value=4.4 Score=34.66 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 125 SADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
....|++++.|. .+++++++|||++.+.+.-+
T Consensus 21 ~~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 21 QVTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp -CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred ccCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 445789999998 89999999999999988543
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=67.44 E-value=5.2 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCCC
Q 011922 130 YTVVAIGKPKQYVSLLLDTGSDVTWTQCKPC 160 (475)
Q Consensus 130 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C 160 (475)
.+.+.|| +|.+..++|||.|++-+.-...
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 5788899 8999999999999999976543
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=53.73 E-value=11 Score=31.48 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=24.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 128 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
.-++.+.|+ +|.+.+++|||.+.+-+.-.
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 446789999 89999999999999988654
No 49
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=53.38 E-value=10 Score=31.41 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.5
Q ss_pred eCCCCceEEEEEEcCCCceeEeCCC
Q 011922 135 IGKPKQYVSLLLDTGSDVTWTQCKP 159 (475)
Q Consensus 135 iGtP~q~~~vi~DTGS~~~Wv~c~~ 159 (475)
|| +|.+.+++|||.|++-+.-..
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 66 788899999999999997654
No 50
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=50.49 E-value=12 Score=33.59 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=24.0
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQC 157 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c 157 (475)
-.+.|.|| +|.+.+++|||.|++-+.-
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 46889999 9999999999999998864
No 51
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=46.52 E-value=11 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.0
Q ss_pred CeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHH
Q 011922 320 SEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPM 364 (475)
Q Consensus 320 ~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~ 364 (475)
...|.++ |.||. |+..|. ++||||+..+++|...
T Consensus 12 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~~ 45 (97)
T 1lya_A 12 DAQYYGE---IGIGT-----PPQCFT---VVFDTGSSNLWVPSIH 45 (97)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBTT
T ss_pred CCeEEEE---EEECC-----CCeEEE---EEEeCCCCceEEeEcC
Confidence 4567765 67773 233343 9999999999998653
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=41.56 E-value=27 Score=33.36 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHH
Q 011922 306 KFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMY 365 (475)
Q Consensus 306 ~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y 365 (475)
+.+..+|+.. ...|.++ |+||.+. |. ++||||++.+++|..-.
T Consensus 4 g~v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~C 46 (323)
T 1bxo_A 4 GVATNTPTAN----DEEYITP---VTIGGTT-------LN---LNFDTGSADLWVFSTEL 46 (323)
T ss_dssp EEEEEEECGG----GSCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTTS
T ss_pred CceeeeecCC----CCEEEEE---EEECCEE-------EE---EEEeCCCcceEEecCCC
Confidence 4455566554 5667765 6788443 22 99999999999997543
No 53
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=37.18 E-value=36 Score=32.50 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHH
Q 011922 306 KFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMY 365 (475)
Q Consensus 306 ~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y 365 (475)
+.+.-+|+.. ...|.++ |+||.+. +. ++||||++.+++|..-.
T Consensus 4 ~~v~~~~~~~----~~~Y~~~---i~iG~q~-------~~---v~~DTGSs~lWv~~~~C 46 (323)
T 1izd_A 4 GSVTTNPTSN----DEEYITQ---VTVGDDT-------LG---LDFDTGSADLWVFSSQT 46 (323)
T ss_dssp EEEEEEECGG----GCCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTTS
T ss_pred CceeeeEcCC----CCEEEEE---EEECCEE-------EE---EEEcCCCcceEEecCCC
Confidence 3445556544 5667765 6788433 22 99999999999997643
No 54
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=32.54 E-value=35 Score=32.56 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=27.7
Q ss_pred eEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHH
Q 011922 308 IKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMY 365 (475)
Q Consensus 308 ~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y 365 (475)
+.-+|+.. ...|.++ |+||.+. |. ++||||++.+++|..-.
T Consensus 5 v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~C 45 (325)
T 1ibq_A 5 AVTTPQNN----DEEYLTP---VTVGKST-------LH---LDFDTGSADLWVFSDEL 45 (325)
T ss_dssp EEEEECTT----TSCEEEE---EEEBTEE-------EE---EEEETTCCCEEEECTTS
T ss_pred EEeEEcCC----CCEEEEE---EEECCEE-------EE---EEEeCCCccceEeeCCC
Confidence 34455433 5667766 6677443 22 99999999999997543
No 55
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=29.48 E-value=56 Score=31.58 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHH
Q 011922 305 TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSP 363 (475)
Q Consensus 305 ~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~ 363 (475)
.+.+...|+... ....|.++ |+||. |+..+. ++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDF--DLEEYAIP---VSIGT-----PGQDFY---LLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEET--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCccceEEeecC--CCCEEEEE---EEECC-----CCcEEE---EEEcCCCCCeEECCC
Confidence 456667787652 24567765 66883 222333 999999999999965
No 56
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=29.25 E-value=44 Score=30.01 Aligned_cols=28 Identities=36% Similarity=0.353 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011922 129 YYTVVAIGKPKQYVSLLLDTGSDVTWTQCK 158 (475)
Q Consensus 129 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~ 158 (475)
=.+++.|| +|....++|||.|++-+.-.
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~~ 140 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEEL 140 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeecc
Confidence 46889999 89999999999999998543
No 57
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=25.32 E-value=36 Score=32.46 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=28.7
Q ss_pred eEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHH
Q 011922 308 IKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPM 364 (475)
Q Consensus 308 ~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~ 364 (475)
+...||... ....|.++ |.||. |+..+. ++||||++.+++|...
T Consensus 3 ~~~~~l~n~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~~ 46 (323)
T 3cms_A 3 VASVPLTNY--LDSQYFGK---IYLGT-----PPQEFT---VLFDTGSSDFWVPSIY 46 (323)
T ss_dssp CEEEEEEEE--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBTT
T ss_pred cceeeeEec--cCCEEEEE---EEECC-----CCeEEE---EEEeCCccceEEcCCC
Confidence 445566542 24567765 66874 233343 9999999999998653
No 58
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=24.23 E-value=54 Score=32.61 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHH
Q 011922 306 KFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSP 363 (475)
Q Consensus 306 ~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~ 363 (475)
..-...|+..+.. ...|+++ |++|. |+..|. ++||||+.++|+|-+
T Consensus 6 ~~~~~~pv~~d~~-~~~Y~~~---i~iGT-----Ppq~~~---v~~DTGS~~lWv~c~ 51 (413)
T 3vla_A 6 PSALVVPVKKDAS-TLQYVTT---INQRT-----PLVSEN---LVVDLGGRFLWVDCD 51 (413)
T ss_dssp CSEEEEEEEECTT-TCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred CccEEEEeeecCC-CCeEEEE---EEcCC-----CCcceE---EEEeCCChhhhcccC
Confidence 3445578877653 5567776 56775 344444 999999999999853
No 59
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=23.36 E-value=74 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=24.1
Q ss_pred CeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHH
Q 011922 320 SEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPM 364 (475)
Q Consensus 320 ~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~ 364 (475)
...|.++ |.||. |+..+. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~~ 47 (329)
T 1oew_A 14 DDAYITP---VQIGT-----PAQTLN---LDFDTGSSDLWVFSSE 47 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBTT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCCCCeEEecCC
Confidence 5567765 67883 222333 9999999999999753
No 60
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=22.02 E-value=81 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred CeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHH
Q 011922 320 SEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMY 365 (475)
Q Consensus 320 ~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y 365 (475)
...|.++ |+||. |+..|. ++||||++.+++|..-.
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~~C 48 (329)
T 3c9x_A 14 DSEYITS---VSIGT-----PAQVLP---LDFDTGSSDLWVFSSET 48 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBTTS
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCeEEecCCC
Confidence 5567665 67883 222333 99999999999997543
No 61
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=21.88 E-value=82 Score=24.90 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.2
Q ss_pred EeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHHHHH
Q 011922 327 LTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAA 367 (475)
Q Consensus 327 l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~y~~ 367 (475)
+..|.|+|+... +++|||+-.|.+.......
T Consensus 10 ~v~v~I~Gq~~e----------~LLDTGAD~TVl~~~~w~~ 40 (104)
T 1fmb_A 10 TTIVLINDTPLN----------VLLDTGADTSVLTTAHYNR 40 (104)
T ss_dssp EEEEEETTEEEE----------EEECTTCSSCEEEHHHHHH
T ss_pred EEEEEECCEEEE----------EEeccCCCcEEEccccCcc
Confidence 345888998643 8999999999999876643
No 62
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=20.56 E-value=89 Score=29.64 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.8
Q ss_pred CeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCcccccCHHH
Q 011922 320 SEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPM 364 (475)
Q Consensus 320 ~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~Lp~~~ 364 (475)
...|.++ |+||. |+..+. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~~~ 47 (325)
T 2apr_A 14 DIEYYGQ---VTIGT-----PGKKFN---LDFDTGSSDLWIASTL 47 (325)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBTT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCEEEccCC
Confidence 5567765 66883 222333 9999999999998653
Done!