Query 011923
Match_columns 475
No_of_seqs 350 out of 1498
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 3.9E-21 1.3E-25 181.3 15.6 128 52-187 38-186 (194)
2 4hyg_A Putative uncharacterize 99.7 1.4E-18 5E-23 169.8 2.1 116 330-458 109-239 (301)
3 3iib_A Peptidase M28; YP_92679 99.1 8.5E-10 2.9E-14 116.2 12.9 136 48-186 66-225 (444)
4 2ek8_A Aminopeptidase; metallo 98.9 7.5E-09 2.6E-13 107.9 13.6 89 82-174 92-181 (421)
5 3fed_A Glutamate carboxypeptid 98.6 1.1E-07 3.8E-12 105.3 9.6 93 81-175 125-267 (707)
6 3kas_A Transferrin receptor pr 98.4 4.2E-07 1.4E-11 99.8 8.6 92 82-175 107-230 (640)
7 3i6s_A Subtilisin-like proteas 98.3 8.8E-07 3E-11 97.4 8.2 93 83-184 257-354 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.0 1.7E-05 5.7E-10 90.7 12.0 92 83-185 260-352 (926)
9 1y9z_A Alkaline serine proteas 97.9 1.6E-05 5.6E-10 83.2 8.3 84 94-184 258-356 (441)
10 3vta_A Cucumisin; subtilisin-l 90.0 0.35 1.2E-05 52.6 6.2 72 94-178 268-342 (621)
11 3gx8_A Monothiol glutaredoxin- 22.5 1.5E+02 0.005 24.5 5.8 68 104-178 15-99 (121)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=181.31 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=104.6
Q ss_pred Eeeeec--C--CcceeEEecccccCCcccccccCcceEEEEecC---CCCCCCCCCC---C-------CCCeEEEEecCC
Q 011923 52 VQTWID--G--IENEEFVGVGARFGTTIVSKEKNANQIHLTLSH---PRDCCSMPKH---K-------YAGDVIMVDRGN 114 (475)
Q Consensus 52 ~~~~~~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------l~g~IaLV~RG~ 114 (475)
+-+|.| | +...++.+.+|+||..+|.+ +.++.++.+. |.+||++.+. + .+||||||+||+
T Consensus 38 n~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~ 114 (194)
T 3icu_A 38 NVSWRVPHTGVNRTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG 114 (194)
T ss_dssp EEEEECCSSCTTCEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT
T ss_pred EEEEECCCCCccceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCC
Confidence 446765 4 55667899999999998876 4778888764 7899998762 1 368999999999
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEeCCC---cccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEEecC
Q 011923 115 -CKFTTKANIAEAAGASALLIINNQK---ELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSP 187 (475)
Q Consensus 115 -CsF~~Ka~~Aq~aGA~avIV~n~~~---~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l~~p 187 (475)
|+|.+|++|||++||+|+||||+++ ....|... ...+||++||++++|+.|++++++|.+|++++...
T Consensus 115 ~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence 9999999999999999999999852 35667542 13579999999999999999999999998887643
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.71 E-value=1.4e-18 Score=169.81 Aligned_cols=116 Identities=28% Similarity=0.448 Sum_probs=79.0
Q ss_pred hhhhhhheeeeeeeccccchhHhhHHHHHHHHHHHHh--cccCchhHHHHHHHHHHhhheeeeeeecccccceeEEEeec
Q 011923 330 PFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQI--VHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVAR 407 (475)
Q Consensus 330 ~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~l~~--i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~~sVMv~VA~ 407 (475)
..++++++.++.+. +|+..|+.|+++|..+... +++..+ .+.+||++|++||.+|||.|+ +|+++|+
T Consensus 109 ~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLAe 177 (301)
T 4hyg_A 109 IGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLAE 177 (301)
T ss_dssp HHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHTT
T ss_pred HHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHHH
Confidence 34556666555566 4999999999999988775 566888 799999999999999999655 8999999
Q ss_pred CCCCCCCCCCEEEEeccccC-------------CCCceeeecccchhhHHHHHHHHHHhhcccC
Q 011923 408 GDKSGEDGIPMLLKIPRMFD-------------PWGGYSIIGFGDILLPGLIIAFSLRFKLSDL 458 (475)
Q Consensus 408 g~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~ 458 (475)
|.- +.++|+++++|+-.+ ..++..|+|+||+++|+++++.+.|||....
T Consensus 178 gvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~ 239 (301)
T 4hyg_A 178 GVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPA 239 (301)
T ss_dssp TC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHccccc
Confidence 952 257999999998422 1256789999999999999999999996433
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.05 E-value=8.5e-10 Score=116.15 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=92.4
Q ss_pred EEEEEeeeecCCcceeEE--------ecccccCCcccccccCcceEEEEecCCCCCCCCCC-CCCCCeEEEEecCCCC--
Q 011923 48 VLVKVQTWIDGIENEEFV--------GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCK-- 116 (475)
Q Consensus 48 ~lv~~~~~~~g~e~~~~~--------~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~Cs-- 116 (475)
+-+.++.|..|.+..+.. ..+..+.+ .++.++++++|+.++..++|.... .+++||||||+||.|.
T Consensus 66 q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~---~tp~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~~~ 142 (444)
T 3iib_A 66 EPVTVPVWRRGIAKASILSPFPQPLVVTALGGSI---ATPAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERHR 142 (444)
T ss_dssp EEEEEEEEEEEEEEEEEEESSCEEECEEECBTCC---CCCTTCEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCCCT
T ss_pred eeEEeccEEecceEEEEeCCCCceEEEEeccCCC---CCCCCCeEEEEEecCCHHHHhhccccccCccEEEEeCCCCCCc
Confidence 444566787655443332 22222332 233457899999987666665543 5899999999999996
Q ss_pred -------HHHH----HHHHHHcCCcEEEEEeCCCcccccccCC--CCCCCCcceeEEEeccchhhhHHHHhhccceEEEE
Q 011923 117 -------FTTK----ANIAEAAGASALLIINNQKELYKMVCDP--DETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQ 183 (475)
Q Consensus 117 -------F~~K----a~~Aq~aGA~avIV~n~~~~l~~M~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~ 183 (475)
|..| +.+|+++||+|+|++|+.++...+.++. ........||++.|++++|+.|++.+++|++++++
T Consensus 143 ~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~ 222 (444)
T 3iib_A 143 DGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVIS 222 (444)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEE
T ss_pred ccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEE
Confidence 6666 4679999999999999865432222211 11123468999999999999999999888766665
Q ss_pred Eec
Q 011923 184 LYS 186 (475)
Q Consensus 184 l~~ 186 (475)
+..
T Consensus 223 l~~ 225 (444)
T 3iib_A 223 LEL 225 (444)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.92 E-value=7.5e-09 Score=107.92 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=67.9
Q ss_pred cceEEEEecCCCCCCCCCCC-CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEE
Q 011923 82 ANQIHLTLSHPRDCCSMPKH-KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAV 160 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~~~-~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv 160 (475)
+.+++++.+... ..++.+. +++|||||++||+|+|.+|+++|+++||+|+|+||+.+......- .......||++
T Consensus 92 ~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~---~~~~~~~IP~~ 167 (421)
T 2ek8_A 92 DVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTL---GGSDASFVAAV 167 (421)
T ss_dssp EEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBC---SSCCTTCCEEE
T ss_pred CcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCccccccc---CCCCCCCccEE
Confidence 567888776422 2222233 799999999999999999999999999999999998654322111 11134689999
Q ss_pred EeccchhhhHHHHh
Q 011923 161 MMPQDAGASLEKML 174 (475)
Q Consensus 161 ~Is~~~G~~L~~~l 174 (475)
.|++++++.|++.+
T Consensus 168 ~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 168 GITKQEGDALAANL 181 (421)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHh
Confidence 99999999999988
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.57 E-value=1.1e-07 Score=105.32 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=67.9
Q ss_pred CcceEEEEecCCCCCCCC-C-------CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-------cc--
Q 011923 81 NANQIHLTLSHPRDCCSM-P-------KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-------YK-- 143 (475)
Q Consensus 81 ~~~~~~Lv~~~p~daC~~-~-------~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l-------~~-- 143 (475)
..++++++.++ .||.. . ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. ++
T Consensus 125 G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~ 202 (707)
T 3fed_A 125 GMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202 (707)
T ss_dssp BCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTS
T ss_pred CceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCC
Confidence 35788998884 46632 1 236999999999999999999999999999999999973210 00
Q ss_pred ---------------cccCCCC-C-----------------CCCcceeEEEeccchhhhHHHHhh
Q 011923 144 ---------------MVCDPDE-T-----------------DLDIHIPAVMMPQDAGASLEKMLL 175 (475)
Q Consensus 144 ---------------M~~~~~~-~-----------------~~~i~IPvv~Is~~~G~~L~~~l~ 175 (475)
+.++++. + ....+||++-|++++|+.|++.+.
T Consensus 203 ~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 203 WNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp SBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred ccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 0000000 0 013589999999999999999875
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.40 E-value=4.2e-07 Score=99.76 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=66.2
Q ss_pred cceEEEEecCCCCCCCC-CC---CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-c-----------ccc
Q 011923 82 ANQIHLTLSHPRDCCSM-PK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-Y-----------KMV 145 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC~~-~~---~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l-~-----------~M~ 145 (475)
.+++++|.+. .||.. .+ .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . .+.
T Consensus 107 ~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~ 184 (640)
T 3kas_A 107 TVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG 184 (640)
T ss_dssp EEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSS
T ss_pred ceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccC
Confidence 4678888874 44522 11 27999999999999999999999999999999999975321 0 000
Q ss_pred cCCC----------------CCCCCcceeEEEeccchhhhHHHHhh
Q 011923 146 CDPD----------------ETDLDIHIPAVMMPQDAGASLEKMLL 175 (475)
Q Consensus 146 ~~~~----------------~~~~~i~IPvv~Is~~~G~~L~~~l~ 175 (475)
.++. +......||++-|++++|+.|.+.+.
T Consensus 185 ~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 185 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0000 00113479999999999999988764
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.30 E-value=8.8e-07 Score=97.44 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=75.9
Q ss_pred ceEEEEecCCCCCCCCCC---C--CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcce
Q 011923 83 NQIHLTLSHPRDCCSMPK---H--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHI 157 (475)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~---~--~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~I 157 (475)
...+++.....+.|.+.. . +++|||+|++||.|++.+|..+++++||.++|++|+.++.. . ....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~---~------~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFR---S------ATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGGG---C------CCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCccccc---c------ccCcC
Confidence 467888877788998743 3 34999999999999999999999999999999999873321 1 12468
Q ss_pred eEEEeccchhhhHHHHhhccceEEEEE
Q 011923 158 PAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 158 Pvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
|+++|+.++|+.|++.+++++..++++
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999876555554
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.05 E-value=1.7e-05 Score=90.65 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=69.5
Q ss_pred ceEEEEecCCCCCCCCCC-CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEE
Q 011923 83 NQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVM 161 (475)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~ 161 (475)
...+++.+. ++|.+.. .+++|||+|++||.|+|.+|+.+++++||.++|++|+......+.. .....+|+++
T Consensus 260 ~~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~ 332 (926)
T 1xf1_A 260 KAYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAF 332 (926)
T ss_dssp CCEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEE
T ss_pred ceEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEE
Confidence 346776653 5786533 5899999999999999999999999999999999998654222211 1235689999
Q ss_pred eccchhhhHHHHhhccceEEEEEe
Q 011923 162 MPQDAGASLEKMLLNTSSVSVQLY 185 (475)
Q Consensus 162 Is~~~G~~L~~~l~~g~~V~V~l~ 185 (475)
|++++|+.|++ ++..++++.
T Consensus 333 i~~~~g~~l~~----~~~~ti~~~ 352 (926)
T 1xf1_A 333 ISRKDGLLLKD----NPQKTITFN 352 (926)
T ss_dssp ECHHHHHHHHH----CSSCEEEEC
T ss_pred EeHHHHHHHHh----CCceEEEec
Confidence 99999998874 455566654
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.92 E-value=1.6e-05 Score=83.18 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=64.2
Q ss_pred CCCCCCC-----CCCCCeEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEeCCCcc-----cccccCCCCCCCCccee
Q 011923 94 DCCSMPK-----HKYAGDVIMVDRGNC-----KFTTKANIAEAAGASALLIINNQKEL-----YKMVCDPDETDLDIHIP 158 (475)
Q Consensus 94 daC~~~~-----~~l~g~IaLV~RG~C-----sF~~Ka~~Aq~aGA~avIV~n~~~~l-----~~M~~~~~~~~~~i~IP 158 (475)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+||+.+.. +.+ +......||
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~-----~~~~~~~~p 332 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV-----DANSDITVP 332 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEE-----CTTCCCCSC
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccc-----ccccCcccc
Confidence 4586532 579999999999987 89999999999999999999986421 111 112345799
Q ss_pred EEEeccchhhhHHHHhhccceEEEEE
Q 011923 159 AVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 159 vv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
+++|++++|+.|++.+ +.+++++.
T Consensus 333 ~~~v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 333 SVSVDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp EEEECHHHHHHHHTTT--TSEEEEEE
T ss_pred EEEEeHHHHHHHHHHh--cCCccccc
Confidence 9999999999999877 44455543
No 10
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=89.99 E-value=0.35 Score=52.60 Aligned_cols=72 Identities=11% Similarity=0.291 Sum_probs=55.6
Q ss_pred CCCCCCC---CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhH
Q 011923 94 DCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASL 170 (475)
Q Consensus 94 daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L 170 (475)
..|.+.. ..++|||++++| .+..|..+++.+||.+++++|+..+. .....+|.+.++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 3465543 368999999865 56689999999999999999986432 1234689999999999999
Q ss_pred HHHhhccc
Q 011923 171 EKMLLNTS 178 (475)
Q Consensus 171 ~~~l~~g~ 178 (475)
++.+....
T Consensus 335 ~~~~~~~~ 342 (621)
T 3vta_A 335 LRYIYSIR 342 (621)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 98877544
No 11
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.53 E-value=1.5e+02 Score=24.52 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCeEEEEecC-----CCCHHHHHHHHH-HcCCcE--EEEEeCCCc------ccccccCCCCCCCCcceeEEEeccc---h
Q 011923 104 AGDVIMVDRG-----NCKFTTKANIAE-AAGASA--LLIINNQKE------LYKMVCDPDETDLDIHIPAVMMPQD---A 166 (475)
Q Consensus 104 ~g~IaLV~RG-----~CsF~~Ka~~Aq-~aGA~a--vIV~n~~~~------l~~M~~~~~~~~~~i~IPvv~Is~~---~ 166 (475)
+++|++..++ .|.|-.|++..- +.|... .-.+|-.++ +....+ ..++|.++|... .
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg-------~~tvP~vfI~g~~iGG 87 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE-------WPTIPQLYVNKEFIGG 87 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT-------CCSSCEEEETTEEEES
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC-------CCCCCeEEECCEEEec
Confidence 4689999998 899999999764 446541 334443221 111111 246899998765 1
Q ss_pred hhhHHHHhhccc
Q 011923 167 GASLEKMLLNTS 178 (475)
Q Consensus 167 G~~L~~~l~~g~ 178 (475)
.+.+.++.++|.
T Consensus 88 ~d~l~~l~~~G~ 99 (121)
T 3gx8_A 88 CDVITSMARSGE 99 (121)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHcCC
Confidence 234555444443
Done!