BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011924
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 25 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++R + ++ DG+ +A+A V +++ ++G +
Sbjct: 84 WN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 140
Query: 434 EISGISFSPDTESLF-------IGVWDRTYGSLLE 461
+ G++FSPD +++ + +W+R G LL+
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 174
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 166 WN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 222
Query: 434 EISGISFSPDTESLF-------IGVWDRTYGSLLE 461
+ G++FSPD +++ + +W+R G LL+
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 256
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374
PDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++W
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434
+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 331 N-RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 387
Query: 435 ISGISFSPDTESLF-------IGVWDRTYGSLLE 461
+ G++FSPD +++ + +W+R G LL+
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 420
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH A+ P+G T A+ + DKT ++
Sbjct: 230 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 289 WN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSS 345
Query: 434 EISGISFSPDTESLF-------IGVWDRTYGSLLE 461
+ G++FSPD +++ + +W+R G LL+
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 379
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPD + + D+ L + G+ + +L GH A+ P+G T A+ + DKT ++
Sbjct: 435 SPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++R + ++ DG+ +A+A V +++ ++G +
Sbjct: 494 WN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 550
Query: 434 EISGISFSPDTESLFIGVWDRT 455
+ G++FSPD +++ D+T
Sbjct: 551 SVWGVAFSPDGQTIASASSDKT 572
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH A+ P+G T A+ + DKT ++
Sbjct: 189 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++ + + DG+ +A+A V +++ ++G +
Sbjct: 248 WN-RN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 304
Query: 434 EISGISFSPDTESLFIGVWDRT 455
+ G++FSPD +++ D+T
Sbjct: 305 SVWGVAFSPDGQTIASASDDKT 326
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH A+ P+G T A+ + DKT ++
Sbjct: 353 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+ RN + + L G+ ++ + ++ D + +A+A V +++ ++G +
Sbjct: 412 WN-RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 468
Query: 434 EISGISFSPDTESLF-------IGVWDRTYGSLLE 461
+ G++FSPD +++ + +W+R G LL+
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 502
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413
A+ P+G T A+ + DKT ++W+ RN + + L G+ ++ + ++ DG+ +A+A
Sbjct: 23 AFSPDGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80
Query: 414 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF-------IGVWDRTYGSLLE 461
V +++ ++G + + G++FSPD +++ + +W+R G LL+
Sbjct: 81 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 133
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 517 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Query: 374 WD 375
W+
Sbjct: 576 WN 577
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 151 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 243
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 93
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 455 TYGSLLE 461
G L+
Sbjct: 154 KTGKCLK 160
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 130 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 222
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 72
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 455 TYGSLLE 461
G L+
Sbjct: 133 KTGKCLK 139
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 134 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 76
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 455 TYGSLLE 461
G L+
Sbjct: 137 KTGKCLK 143
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 137 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 455 TYGSLLE 461
G L+
Sbjct: 140 KTGKCLK 146
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 135 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 227
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 77
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 455 TYGSLLE 461
G L+
Sbjct: 138 KTGKCLK 144
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 134 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 226
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 76
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 455 TYGSLLE 461
G L+
Sbjct: 137 KTGKCLK 143
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 137 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 229
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 455 TYGSLLE 461
G L+
Sbjct: 140 KTGKCLK 146
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 140 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 232
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 82
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 455 TYGSLLE 461
G L+
Sbjct: 143 KTGKCLK 149
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 140 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 232
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 82
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 455 TYGSLLE 461
G L+
Sbjct: 143 KTGKCLK 149
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 156 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 248
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 98
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 455 TYGSLLE 461
G L+
Sbjct: 159 KTGKCLK 165
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 140 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 232
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 82
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 455 TYGSLLE 461
G L+
Sbjct: 143 KTGKCLK 149
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 137 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 229
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 455 TYGSLLE 461
G L+
Sbjct: 140 KTGKCLK 146
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 139 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 231
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 81
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 455 TYGSLLE 461
G L+
Sbjct: 142 KTGKCLK 148
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 365
L + + S D LL+ D+ + D +GK + +L GH ++ F ++P +G
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425
+ D++ RIWD++ + + L + + ++ + DG + ++ ++D SG
Sbjct: 125 SFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 426 EQEIDFFG-EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+ ID +S + FSP+ + + D T L +Y G+C
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 225
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 75
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 455 TYGSLLE 461
G L+
Sbjct: 136 KTGKCLK 142
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 158 WDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 250
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 100
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 455 TYGSLLE 461
G L+
Sbjct: 161 KTGKCLK 167
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 137 WDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 434 -EISGISFSPDTESLFIGVWDRTYGSLLEY--GRC 465
+S + FSP+ + + D T L +Y G+C
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTL-KLWDYSKGKC 229
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 455 TYGSLLE 461
G L+
Sbjct: 140 KTGMCLK 146
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D LL+ D+ + D +GK + +L GH ++ F ++P +G+ D++ RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD++ + L + + ++ + DG + ++ ++D SG + ID
Sbjct: 137 WDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 434 -EISGISFSPDTESLF-------IGVWDRTYGSLLE-YGRCRNYSY 470
+S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 454
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 455 TYGSLLE 461
G L+
Sbjct: 140 KTGMCLK 146
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDGK L ++ + D K + L GH ++ + P+G +G+ D+T RI
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-------EKE 426
WDLR + L G DG+Y+A V V+D ++G+ E E
Sbjct: 192 WDLRT-GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 427 QEIDFFGEISGISFSPDTESLFIGVWDRT 455
+ + F+ D +S+ G DR+
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 321 IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 380
+ V D+ G LV+ + + S GH D ++ + +G + +G+ D++ ++W+L+N +
Sbjct: 231 VRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 381 ESVAVLKGNLGA-----------IRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
N G + S+ T + Y+ + V +D KSG
Sbjct: 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 393 IRSIRYTSDGRYMATAEPADFVHVYDVKS--------GYEKEQEIDFFGEISGISFSPDT 444
IRS+ ++ DG+++AT + ++D+++ G+E+ +I + + P
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--------DIYSLDYFPSG 177
Query: 445 ESLFIGVWDRT 455
+ L G DRT
Sbjct: 178 DKLVSGSGDRT 188
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364
+LCL + S G + G + ++ D +G+ + + H + ++P+G FA+
Sbjct: 199 VLCLDLAP-SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 365 GNQDKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
G+ D TCR++DLR E K ++ GA S+ ++ GR + ++V+DV G
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGA-SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316
Query: 423 YEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+S + SPD + G WD T
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 322 IVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR-N 378
IV + DG ++ DS T ++ + A A+ P+G A G D C ++ L +
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138
Query: 379 LSESVAVLKGNLGA----IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434
+E++A K ++ + + +T+ + TA ++DV+SG + +
Sbjct: 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198
Query: 435 ISGISFSP-DTESLFIG--------VWDRTYGSLLE 461
+ + +P +T + F+ VWD G ++
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 42/249 (16%)
Query: 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGH--VAPSEKHPGSLLEGFTQTQ 191
+N A K V + H + + S T+S Q+L SG A + G LL+ F
Sbjct: 139 KNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196
Query: 192 VSTLAV------KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS 245
L + V+GG + + + R G + T++ + N+V Y PS
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-RSGQCVQAFETHESD--VNSVRYY--PS 251
Query: 246 GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305
G F + ++D R +D+ R V + S II ++F
Sbjct: 252 GDA-FASGSDDATCRLYDL---------RADREVAIYSKESIIFGASSVDF--------- 292
Query: 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 365
S G+LL ++ + D + G ++ L GH + P+G F +G
Sbjct: 293 --------SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344
Query: 366 NQDKTCRIW 374
+ D T R+W
Sbjct: 345 SWDHTLRVW 353
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 315 PDGKLLIIVGD-NPDGLLVDSMTGKTIASL-----CGH----LDFSFASAWHPNGVTFAT 364
PD + +I G + +L D TG+ I+ GH L S S N F +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL---NANMFIS 223
Query: 365 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY- 423
G+ D T R+WDLR S +V G+ G I S+++ DG+ T ++D+++G+
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 424 ------EKEQEIDFFGEISGISFSPDTESLFIG-------VWDRTYGSL-LEYGRCRN 467
E ++ + ++ ++FS LF G VWD + L G +N
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 322 IVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 379
IV + DG L+ +++T + ++ H + A+ PNG + A G D C I++L +
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 380 SESVA------VLKGNLGAIRSIRYTSDGRYMATAEPADFVHV-YDVKSGYEKEQEIDFF 432
++ VL G+ G S +Y D D V +DV +G Q I F
Sbjct: 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG----QRISIF 196
Query: 433 GEISGISFSPDTESLFI 449
G + D SL I
Sbjct: 197 GSEFPSGHTADVLSLSI 213
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 431 FFGEISGISFSPDTESLFIGVWD 453
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
D +LL+ + ++ DS T + ++ + A+ P+G A G D C I++
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 376 LRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432
L+ +V V L G+ G + R+ D + + T+ ++D+++G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 433 GEISGISFSPDTESLFIGVWD 453
G++ +S +PDT G D
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 431 FFGEISGISFSPDTESLFIGVWD 453
+S + + D ++ G WD
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWD 344
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
D +LL+ + ++ DS T + ++ + A+ P+G A G D C I++
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 376 LRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432
L+ +V V L G+ G + R+ D + + T+ ++D+++G +
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 433 GEISGISFSPDTESLFIGVWD 453
G++ +S +PDT G D
Sbjct: 196 GDVMSLSLAPDTRLFVSGACD 216
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
G ++ +I+ I F P+ + G D T
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 396
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 114
Query: 397 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 152
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 431 FFGEISGISFSPDTESLFIGVWD 453
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
D +LL+ + ++ DS T + ++ + A+ P+G A G D C I++
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 376 LRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432
L+ +V V L G+ G + R+ D + + T+ ++D+++G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 433 GEISGISFSPDTESLFIGVWD 453
G++ +S +PDT G D
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 431 FFGEISGISFSPDTESLFIGVWD 453
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
D +LL+ + ++ DS T + ++ + A+ P+G A G D C I++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 376 LRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432
L+ +V V L G+ G + R+ D + + T+ ++D+++G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 433 GEISGISFSPDTESLFIGVWD 453
G++ +S +PDT G D
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 396
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 103
Query: 397 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 141
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 431 FFGEISGISFSPDTESLFIGVWD 453
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
D +LL+ + ++ DS T + ++ + A+ P+G A G D C I++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 376 LRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432
L+ +V V L G+ G + R+ D + + T+ ++D+++G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 433 GEISGISFSPDTESLFIGVWD 453
G++ +S +PDT G D
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 396
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 103
Query: 397 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 141
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394
+TG+ H + A + F++ + DKT +IW LS + LKG+ G +R
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVR 1131
Query: 395 SIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE 445
++ DG +AT + + +++V G +E G ++ + FSPD++
Sbjct: 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1191
Query: 446 SL 447
+L
Sbjct: 1192 TL 1193
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRY 398
+A GHL + + P+G +F T + D+T R+W+ + + ++ A VLK + +
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----- 929
Query: 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIG 450
+ M A D + + +G K +ID+ E +S SP E + G
Sbjct: 930 FQENETMVLA--VDNIRGLQLIAG--KTGQIDYLPEAQVSCCCLSPHLEYVAFG 979
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369
H+ S DG+ + G + + + TG+ + + H D A+ + AT + DK
Sbjct: 620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK 679
Query: 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQ 427
+IWD + V + + +T+ ++ A ++ F+ ++D+ +KE
Sbjct: 680 KVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKEC 735
Query: 428 EIDFFGEISGIS---FSPDTESL 447
FG + ++ FSPD E L
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELL 758
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 330 LLVDSMTG-KTIASLCGHLDF-----SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 383
L VD++ G + IA G +D+ P+ A G++D +I +L N +
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVF 996
Query: 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
+ G+ A+R I++T+DG+ + ++ + V++ ++G
Sbjct: 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394
+TG+ H + A + F++ + DKT +IW LS + LKG+ G +R
Sbjct: 1080 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVR 1138
Query: 395 SIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE 445
++ DG +AT + + +++V G +E G ++ + FSPD++
Sbjct: 1139 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1198
Query: 446 SL 447
+L
Sbjct: 1199 TL 1200
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRY 398
+A GHL + + P+G +F T + D+T R+W+ + + + S VLK + +
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----- 936
Query: 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIG 450
+ M A D + + +G K +ID+ E +S SP E + G
Sbjct: 937 FQENETMVLA--VDNIRGLQLIAG--KTGQIDYLPEAQVSCCCLSPHLEYVAFG 986
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369
H+ S DG+ + G + + + TG+ + + H D A+ + AT + DK
Sbjct: 627 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK 686
Query: 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQ 427
+IWD + V + + +T+ ++ A ++ F+ ++D+ +KE
Sbjct: 687 KVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKEC 742
Query: 428 EIDFFGEISGIS---FSPDTESL 447
FG + ++ FSPD E L
Sbjct: 743 RNTMFGHTNSVNHCRFSPDDELL 765
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 330 LLVDSMTG-KTIASLCGHLDF-----SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 383
L VD++ G + IA G +D+ P+ A G++D +I +L N +
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVF 1003
Query: 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
+ G+ A+R I++T+DG+ + ++ + V++ ++G
Sbjct: 1004 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
A+ + D R+WDL N + ++ G + A ++ ++ D +Y+AT V+++ V+SG
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
Query: 423 YEKEQEIDFFGE-ISGISFSPDTESL-------FIGVWDRTYGSLL 460
+KE +D G+ I I++SPD + L I ++D G LL
Sbjct: 155 -KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 395
+GK SL F + A+ P+G A+G D I+D+ + + L+G+ IRS
Sbjct: 153 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRS 211
Query: 396 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG-------ISFSPD 443
+ ++ D + + TA ++ +YDV Q + G +SG ++F PD
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDV-------QHANLAGTLSGHASWVLNVAFCPD 259
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPD +LL+ D+ + D +L GH + A+ P+ F + + DK+ ++
Sbjct: 215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418
WD+ + V + + ++Y +G + + +H+YD
Sbjct: 275 WDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 314 SPDGKLLIIVGDNPDGLL--VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
SPDGK L DG++ D TGK + +L GH + + P+ T + D
Sbjct: 173 SPDGKYL--ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230
Query: 372 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
+I+D+++ + L G+ + ++ + D + ++ V V+DV
Sbjct: 231 KIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 314 SPDGKLLIIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
SP +IV D L+ D TG+ + L GH ++ + P+G A+ ++D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 372 RIWDLRN---LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD-------VKS 421
R+WDL LSE A GA + S RY A + ++D V+
Sbjct: 221 RLWDLTKGEALSEMAA------GAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVEL 274
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWD---RTYG 457
E + E I++S D +L+ G D R +G
Sbjct: 275 APEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWG 313
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 318 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377
K L+ G NPD + G L GH F A NG + + D + R+W+L+
Sbjct: 38 KTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ 97
Query: 378 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS----GYEKEQEIDFFG 433
N L G+ + S+ ++ D R + + + + V++VK + D+
Sbjct: 98 NGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW-- 154
Query: 434 EISGISFSPDTESLFI--GVWD 453
+S + FSP ++ I G WD
Sbjct: 155 -VSCVRFSPSLDAPVIVSGGWD 175
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 345 GHLDFSFASAWHPNGV--TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402
GH D+ + PN + T + + DKT ++W+L N + L G+ G + ++ + DG
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDG 573
Query: 403 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF------IGVWDRTY 456
A+ V ++D+ G +K ++ I + FSP+ L I +WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEG-KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLES 632
Query: 457 GSLLE 461
S++E
Sbjct: 633 KSIVE 637
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 358 NGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATAEPADF 413
N + ++DK+ +W L ++ V L G+ + + +SDG++ +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 414 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466
+ ++D+ +G + + ++ ++FS D + DRT G C+
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 397
K ++L GH + A P+G A+G +D +WDL + + L+ N I ++
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEAN-SVIHALC 609
Query: 398 YTSDGRYMATAEPADFVHVYDVKS 421
+ S RY A + ++D++S
Sbjct: 610 F-SPNRYWLCAATEHGIKIWDLES 632
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW--DLRNLSESVAVLKGNLGAIRS 395
+ + +L GH + + AW P+G AT ++DK+ +W D + E V+VL + ++
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 396 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTES 446
+ + +A+A D V +Y +E+E D+ + ++F P +
Sbjct: 156 VVWHPSQELLASASYDDTVKLY-------REEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 447 LFIGVWDRTYGSLLEY 462
L DRT +Y
Sbjct: 209 LASCSDDRTVRIWRQY 224
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 314 SPDGKLLIIVGDNPD----GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369
+P G LL G + G DS K++ S GH AW P G A+ + D
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDA 83
Query: 370 TCRIWDL-RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426
T IW ++ E V L+G+ ++S+ + G +AT V V++V E E
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRN---LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410
AW+P G A+ D+ RIW + +SV + +G+ +R + ++ G Y+A+A
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWSPCGNYLASAS- 80
Query: 411 ADFVHVYDVKSGYEKEQEIDF---------FGEISGISFSP 442
+D + K+ + DF E+ ++++P
Sbjct: 81 ------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 308 LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 367
+Q+ SP L ++ L ++ + +A GHL + + P+G +F T +
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSD 908
Query: 368 DKTCRIWDLRNLSESVAVL 386
D+T R+W+ + + ++ AV+
Sbjct: 909 DQTIRLWETKKVCKNSAVM 927
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417
+ F++ + DKT +IW +L + L+G+ G +R ++ D +AT + + ++
Sbjct: 1102 DATKFSSTSADKTAKIWSF-DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 418 DVKSG--------YEKEQEIDFFGEISGISFSPDTESL-----FIGVWDRTYG 457
+V +G +E G ++ + FSPD + L +I W+ G
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTG 1213
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369
H+ S DG+ + G + + + TG+ + + H D A+ + AT + DK
Sbjct: 626 HACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDK 685
Query: 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY--MATAEPADFVHVYDVKSGYEKEQ 427
+IW+ E V + + +T+ + +AT F+ ++D+ +KE
Sbjct: 686 KVKIWNSMT-GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN---QKEC 741
Query: 428 EIDFFGEISGIS---FSPDTESLF-------IGVWDRT 455
FG + ++ FSPD + L + +WD T
Sbjct: 742 RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---------LSESVAVLKGNL 390
+ L GH SA+ + ATG+ + RIW++ N LSE A G
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG-- 1183
Query: 391 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443
G + + ++ DG+ + +A ++ ++V +G + + I SPD
Sbjct: 1184 GWVTDLCFSPDGKMLISA--GGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 378
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 379 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 417
+ + L + + + ++ DG + T + + VY
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 378
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 224 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 283
Query: 379 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 417
+ + L + + + ++ DG + T + + VY
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 378
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 379 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 417
+ + L + + + ++ DG + T + + VY
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSES------VAVLKGNLGAIRSIRYTSDGRYMAT 407
AW P+ A G+ D T IW ++ +A+++G+ ++ + +++DG Y+AT
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 408 AEPADFVHVYDV-KSGYEKE 426
V +++ +SG E E
Sbjct: 125 CSRDKSVWIWETDESGEEYE 144
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 355 WHPNGVTFATGNQDKTCRIW-DLRNLSESVAVLKGNLGAIRS 395
WHP+ A+ + D T RIW D + E VAVL G+ G + S
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASL-------CGHLDFSFASAWHPNGVTFATGN 366
+PDG L G + +L + + G H F W P+G A+ +
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426
DKT +IW++ L + G + + + + + F++ + + G +
Sbjct: 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318
Query: 427 QEIDFFGEISGISFSPDTESLF-------IGVWDRTYG 457
I+ +S S D ++LF I WD + G
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388
+W P+ V ATG+ D + +W++ S+ ++KG
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 353 KIGEEQSTE 361
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 357 KIGEEQSTE 365
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 355 KIGEEQSTE 363
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 401
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 373
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 374 WD 375
W+
Sbjct: 255 WN 256
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 318 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 377 RN 378
N
Sbjct: 127 EN 128
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 401
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 373
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 374 WD 375
W+
Sbjct: 255 WN 256
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 318 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 377 RN 378
N
Sbjct: 127 EN 128
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 304 CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363
+ CLQ + +I D+ + DS+ K + L GH D + + +G
Sbjct: 124 VITCLQF-----EDNYVITGADDKXIRVYDSINKKFLLQLSGH-DGGVWALKYAHGGILV 177
Query: 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS--DGRYMATAEPADFVHVYDVKS 421
+G+ D+T R+WD++ V +G+ +R + + +Y+ T + +HV+ +
Sbjct: 178 SGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-- 234
Query: 422 GYEKEQEIDFFGE---ISGISFSPDTESLFIGV 451
KE + GE + +P+ F+GV
Sbjct: 235 --PKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 321 IIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378
I+V + D L+ D K + L GH D +++ + + + D T RIWDL N
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409
E L+G+ + +R + A A+
Sbjct: 342 -GELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392
D TG +L GH D ++ +G A+ + D T ++WD + E + + G+
Sbjct: 136 DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-ECIRTMHGHDHN 194
Query: 393 IRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423
+ S+ +G ++ +A + +++V++GY
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390
+ D TG + +L GH ++ +H G + DKT R+WD +N + L +
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHE 380
Query: 391 GAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
+ S+ + Y+ T V V++ +
Sbjct: 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH +HP + ++D T ++WD + LKG+ +++ I +
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHS 161
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTESLFIGVWDRT 455
G+ +A+ + ++D + G+E + + +S +S P+ + + D+T
Sbjct: 162 GKLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374
P+G ++ + + + TG + + GH ++ + +G A+ + D+T R+W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409
+ E A L+ + + I + + Y + +E
Sbjct: 262 VVAT-KECKAELREHRHVVECISWAPESSYSSISE 295
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 317 GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376
GK ++ D+ + D + + +L H F + +H TG+ D+T ++W+
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 377 R 377
R
Sbjct: 410 R 410
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418
G +G++DKT ++WD+ + + L G+ +R + + S G+++ + + V+D
Sbjct: 308 GPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 419 VKS 421
K+
Sbjct: 367 YKN 369
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 309 QHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-GVTFATGN 366
H S L+ VG P L D +G L GH A +W P AT +
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS 206
Query: 367 QDKTCRIWDLR------------NLSESVAVLKGNL---GAIRSIRYTSDGRYMATAEPA 411
D ++WD+R N +S AV N G + + +TSDG ++ T
Sbjct: 207 ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266
Query: 412 DFVHVYDVKSG 422
+ + +++ +G
Sbjct: 267 NRMRLWNSSNG 277
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392
DS+ K + L GH D + + +G +G+ D+T R+WD++ V +G+
Sbjct: 148 DSINKKFLLQLSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKK-GCCTHVFEGHNST 205
Query: 393 IRSIRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTESL 447
+R + + +Y+ T + +HV+ + KE + GE + +P+
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 448 FIGV 451
F+GV
Sbjct: 262 FVGV 265
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 321 IIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378
I+V + D L+ D K + L GH D +++ + + + D T RIWDL N
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409
E + L+G+ + +R + A A+
Sbjct: 342 -GELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 373
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 374 WD 375
W+
Sbjct: 255 WN 256
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 401
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 321 IIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378
IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 401
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 373
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 374 WD 375
W+
Sbjct: 255 WN 256
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 318 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 377 RN 378
N
Sbjct: 127 EN 128
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 328 DGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385
DGL LVD TG + + GH F + PNG + G +D+T RIW N S +
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVI 262
Query: 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVY-DVKSGYEKEQEI 429
+ +I S+ S+G + + + V ++ KS + E EI
Sbjct: 263 TLPAI-SIWSVDCXSNGDIIVGSSD-NLVRIFSQEKSRWASEDEI 305
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---N 389
D TG I +L GH S S +GN D T +IWD++ + + L+G +
Sbjct: 305 DVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKH 361
Query: 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
A+ +++ + ++ T+ V ++D+K+G
Sbjct: 362 QSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 373
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 434 EISGISFSPD 443
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 373
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 175 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 232
Query: 434 EISGISFSPD 443
E+ ++FSP+
Sbjct: 233 EVFSLAFSPN 242
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 20 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 77
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 78 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I + ++ + + D ++V+D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 351 KIGEEQSAE 359
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I + ++ + + D ++V+D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 351 KIGEEQSAE 359
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 215
Query: 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 432
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 433 -GEISGISFSP 442
G + +++ P
Sbjct: 276 QGAVKAVAWCP 286
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374
T +A L GH + P+G T A+ D+T R+W
Sbjct: 353 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 226
Query: 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 432
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 433 -GEISGISFSP 442
G + +++ P
Sbjct: 287 QGAVKAVAWCP 297
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374
T +A L GH + P+G T A+ D+T R+W
Sbjct: 364 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 373
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 434 EISGISFSPD 443
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 373
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 434 EISGISFSPD 443
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 373
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 434 EISGISFSPD 443
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 419
ATG+ DKT +WDLRNL + + + I ++++ + + D ++V+D+
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 420 KSGYEKEQE 428
K G E+ E
Sbjct: 349 KIGEEQSPE 357
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 432
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 433 -GEISGISFSP 442
G + +++ P
Sbjct: 196 QGAVKAVAWCP 206
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 321 IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRIW 374
II G + V ++ G+ +A+L GH D+ PN VT + DK + W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV---KSGYEKEQEIDF 431
+L N + A G+ I ++ + DG +A+A + ++++ K+ Y + +
Sbjct: 182 NL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 432 FGEISGISFSPD 443
F ++FSP+
Sbjct: 241 F----SLAFSPN 248
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 408
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399
I +L GH AW +G+ A+G D +IWD R+ N A++++ +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-AAVKAVAWC 268
Query: 400 S-DGRYMATAEPA--DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448
+AT +H ++ +G + +D +++ + +SP ++ +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIM 319
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S DG L + N + D + + ++ GH +W N ++G++
Sbjct: 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHH 200
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
D+R + + L+G+ + + + SDG +A+ + V ++D +S K + +
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260
Query: 434 EISGISFSPDTESLF 448
+ +++ P +L
Sbjct: 261 AVKAVAWCPWQSNLL 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390
L D TG T GH + A+ + +G++DKT ++W+ + + + +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 391 GAIRSIRYT--SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443
+ +R++ S + + V V+++ + K I G ++ ++ SPD
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 203
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 364 TGNQDKTCRIWDLR----NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
+ ++DKT +W L N L+G+ + + +SDG++ + + ++D+
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466
+G + + ++ ++FS D + G D+T G C+
Sbjct: 93 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404
GH + P+G A+G +D +WDL N + + L G G I + S RY
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG--GDIINALCFSPNRY 246
Query: 405 MATAEPADFVHVYDVKSGY---EKEQEIDFFG------EISGISFSPDTESLFIG----- 450
A + ++D++ E +QE+ + + +++S D ++LF G
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Query: 451 --VWDRTYGS 458
VW T G+
Sbjct: 307 VRVWQVTIGT 316
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390
L D TG T GH + A+ + +G++DKT ++W+ + + + +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 391 GAIRSIRYT--SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443
+ +R++ S + + V V+++ + K I G ++ ++ SPD
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 226
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 364 TGNQDKTCRIWDLR----NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
+ ++DKT +W L N L+G+ + + +SDG++ + + ++D+
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466
+G + + ++ ++FS D + G D+T G C+
Sbjct: 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404
GH + P+G A+G +D +WDL N + + L G G I + S RY
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG--GDIINALCFSPNRY 269
Query: 405 MATAEPADFVHVYDVKSGY---EKEQEIDFFG------EISGISFSPDTESLFIG----- 450
A + ++D++ E +QE+ + + +++S D ++LF G
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Query: 451 --VWDRTYGS 458
VW T G+
Sbjct: 330 VRVWQVTIGT 339
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 434 EISGISFSPDTESLFIGV 451
E++GISFSPD ++LF+G+
Sbjct: 532 EVTGISFSPDQKTLFVGI 549
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 357 PNGVTFATGNQDKTCRIWDLRNLS 380
PNG ATG +DK IWD+ NL+
Sbjct: 223 PNGKYIATGGKDKKLLIWDILNLT 246
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH F A + + DKT R+WDLR + G+ + S+ ++ D
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPD 129
Query: 402 GRYMATAEPADFVHVYDVK-----SGYEKEQEIDFFGEISGISFSPDTES 446
R + +A + ++++ S EKE D+ +S + +SP +S
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDW---VSCVRYSPIMKS 176
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 356 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415
P FA+ D ++W+ + K + + + + +G+Y+AT +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 416 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451
++D+ + ++E D I+ I+F+P + + +G
Sbjct: 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT 274
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 324 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSES 382
G+ P +L S+TG + C +D HPN ATG QD IWD+R +
Sbjct: 223 GNEPSQIL--SLTGDRVPLHC--VDR------HPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 383 VAVLKGNLGAIRSIRY 398
V++LK + + + +
Sbjct: 273 VSLLKAHEAEMWEVHF 288
>pdb|3DC7|A Chain A, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|B Chain B, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|C Chain C, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109
Length = 232
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 345 GHLDFSFASAWHPNGVTFATG-----NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399
GH+ F AW + +T G D WD+ S+++ + +G+ RY
Sbjct: 17 GHVSFK-RPAWLGDSITANNGLATVHYHDILAADWDVER-SDNLGISGSTIGS----RYD 70
Query: 400 SDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440
+ RY A E ADF+ V+ + Y ++Q + +G+ +F
Sbjct: 71 AXAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDXTTF 112
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413
AW +G + TG ++ R+W+ + VL + I S+++ DG ++ + + +
Sbjct: 115 AWSHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172
Query: 414 VHVYDVKSG 422
+++V SG
Sbjct: 173 TILWNVISG 181
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 378
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
pdb|1HZO|B Chain B, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
Length = 271
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 161 SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA---VKDKLLVAGGFQGELICKHLD 217
+S S+V+ V+ + SEK G L + T + +A + +K L G EL L
Sbjct: 45 ASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAELSAATLQ 104
Query: 218 RPGVSFCSRTTYDDNAITNAVEIY-GSPSGAVHFTASNNDCGVR 260
Y DN N + Y G P+ F S ND R
Sbjct: 105 -----------YSDNTAMNKILDYLGGPAKVTQFARSINDVTYR 137
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 343 LCGHLDFSFASA-----WHPNGVTFATGNQDKTCRI 373
+C H+ S WHPN V A G+ D CRI
Sbjct: 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 343 LCGHLDFSFASA-----WHPNGVTFATGNQDKTCRI 373
+C H+ S WHPN V A G+ D CRI
Sbjct: 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 355 WHPNG---VTFATG-NQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRY 398
WHP V ATG + D + IWDLRN + + L +G+ I S+ +
Sbjct: 222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 378
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 192 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 378
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPD K+ + + + D + GH D + +G TG D T R
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 374 WDLRNLSESVAVLKGNLGA-IRSIRYTSDGRYMATAEPADFVHVYDV 419
WDLR E + + + + I S+ Y G ++A + V V V
Sbjct: 210 WDLR---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 378
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,168,767
Number of Sequences: 62578
Number of extensions: 591476
Number of successful extensions: 1628
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 255
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)