Query 011924
Match_columns 475
No_of_seqs 590 out of 3612
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-42 3.7E-47 316.3 21.1 262 191-458 177-456 (459)
2 KOG0271 Notchless-like WD40 re 100.0 2E-38 4.2E-43 286.3 25.3 322 114-457 98-476 (480)
3 KOG0286 G-protein beta subunit 100.0 1.9E-36 4.2E-41 264.8 33.2 270 137-458 62-341 (343)
4 KOG0291 WD40-repeat-containing 100.0 9.6E-37 2.1E-41 296.4 32.4 301 122-456 266-606 (893)
5 KOG0271 Notchless-like WD40 re 100.0 5.4E-36 1.2E-40 270.5 23.2 264 188-458 114-435 (480)
6 KOG0263 Transcription initiati 100.0 2.6E-35 5.7E-40 289.0 22.3 235 191-458 380-645 (707)
7 KOG0315 G-protein beta subunit 100.0 1.3E-33 2.9E-38 241.8 27.5 256 150-457 19-283 (311)
8 KOG0315 G-protein beta subunit 100.0 2.6E-33 5.7E-38 240.0 28.2 266 124-441 32-309 (311)
9 KOG0284 Polyadenylation factor 100.0 1.9E-34 4.1E-39 262.6 18.1 329 76-463 40-381 (464)
10 KOG0273 Beta-transducin family 100.0 1.8E-32 3.9E-37 253.9 30.3 261 188-457 234-518 (524)
11 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-33 3.5E-38 257.7 17.3 224 230-457 173-413 (459)
12 KOG0263 Transcription initiati 100.0 1.8E-32 4E-37 269.1 25.2 199 188-422 450-651 (707)
13 KOG0279 G protein beta subunit 100.0 1.2E-31 2.6E-36 233.5 27.1 227 190-451 16-252 (315)
14 KOG0279 G protein beta subunit 100.0 5.3E-31 1.2E-35 229.5 30.1 231 189-457 63-308 (315)
15 KOG0286 G-protein beta subunit 100.0 5.4E-31 1.2E-35 230.7 28.7 231 190-457 56-298 (343)
16 KOG0265 U5 snRNP-specific prot 100.0 7.6E-31 1.6E-35 230.7 28.1 264 188-456 46-332 (338)
17 KOG0295 WD40 repeat-containing 100.0 2.2E-31 4.7E-36 239.6 22.7 269 138-459 116-403 (406)
18 KOG0284 Polyadenylation factor 100.0 8.9E-33 1.9E-37 251.8 13.6 232 190-457 97-332 (464)
19 KOG0319 WD40-repeat-containing 100.0 5.1E-31 1.1E-35 256.4 25.7 235 190-456 366-613 (775)
20 KOG0285 Pleiotropic regulator 100.0 1.5E-30 3.3E-35 233.5 22.5 247 189-474 151-400 (460)
21 KOG0282 mRNA splicing factor [ 100.0 9.1E-32 2E-36 250.3 15.1 233 191-457 216-500 (503)
22 KOG0296 Angio-associated migra 100.0 6E-29 1.3E-33 224.1 31.0 280 151-457 86-393 (399)
23 cd00200 WD40 WD40 domain, foun 100.0 3.6E-28 7.8E-33 228.6 36.6 270 134-457 13-286 (289)
24 KOG0277 Peroxisomal targeting 100.0 7.3E-30 1.6E-34 219.5 20.8 233 191-456 62-303 (311)
25 KOG0266 WD40 repeat-containing 100.0 6.1E-29 1.3E-33 249.6 29.8 235 189-457 159-404 (456)
26 KOG0291 WD40-repeat-containing 100.0 3.5E-27 7.6E-32 230.1 39.2 322 123-464 137-510 (893)
27 KOG0306 WD40-repeat-containing 100.0 5.9E-29 1.3E-33 242.3 26.8 274 132-461 375-663 (888)
28 KOG0273 Beta-transducin family 100.0 2.4E-29 5.3E-34 233.3 22.8 263 188-456 177-476 (524)
29 KOG1407 WD40 repeat protein [F 100.0 1.7E-28 3.6E-33 212.0 26.0 262 190-456 21-296 (313)
30 KOG0266 WD40 repeat-containing 100.0 2.9E-28 6.4E-33 244.6 30.6 266 137-453 166-443 (456)
31 PLN00181 protein SPA1-RELATED; 100.0 2.1E-27 4.6E-32 255.5 39.3 276 136-458 489-789 (793)
32 KOG0285 Pleiotropic regulator 100.0 2.9E-28 6.2E-33 218.9 25.8 282 124-461 144-438 (460)
33 KOG0276 Vesicle coat complex C 100.0 2E-28 4.2E-33 234.1 25.6 256 147-456 31-293 (794)
34 KOG0318 WD40 repeat stress pro 100.0 9E-27 2E-31 218.9 33.8 263 191-456 192-554 (603)
35 KOG0295 WD40 repeat-containing 100.0 1.4E-28 3E-33 221.6 20.6 234 188-457 107-359 (406)
36 KOG0310 Conserved WD40 repeat- 100.0 1.2E-27 2.6E-32 223.3 26.7 273 130-457 26-304 (487)
37 KOG0281 Beta-TrCP (transducin 100.0 4.8E-30 1E-34 229.4 10.3 223 190-458 198-424 (499)
38 KOG0305 Anaphase promoting com 100.0 1.2E-27 2.7E-32 231.3 27.4 271 131-459 178-458 (484)
39 cd00200 WD40 WD40 domain, foun 100.0 8E-27 1.7E-31 219.4 32.1 232 189-456 9-243 (289)
40 KOG0643 Translation initiation 100.0 1.4E-27 3E-32 206.9 24.3 235 188-457 9-312 (327)
41 PLN00181 protein SPA1-RELATED; 100.0 6.3E-27 1.4E-31 251.9 34.3 237 189-458 483-734 (793)
42 PTZ00421 coronin; Provisional 100.0 3.3E-26 7.1E-31 229.2 36.5 225 188-443 74-314 (493)
43 KOG0318 WD40 repeat stress pro 100.0 4E-26 8.7E-31 214.6 32.5 295 142-459 30-347 (603)
44 KOG0645 WD40 repeat protein [G 100.0 3.5E-26 7.5E-31 198.7 29.1 234 191-462 16-261 (312)
45 KOG0276 Vesicle coat complex C 100.0 2E-27 4.3E-32 227.3 22.5 233 191-459 15-254 (794)
46 KOG0281 Beta-TrCP (transducin 100.0 1.8E-28 4E-33 219.3 14.5 245 148-456 214-471 (499)
47 PTZ00420 coronin; Provisional 100.0 2E-25 4.4E-30 224.6 36.0 223 189-443 74-317 (568)
48 KOG0316 Conserved WD40 repeat- 100.0 6.1E-27 1.3E-31 199.4 19.9 229 188-456 16-251 (307)
49 PTZ00421 coronin; Provisional 100.0 1.2E-25 2.6E-30 225.1 32.3 233 191-456 24-284 (493)
50 KOG0772 Uncharacterized conser 100.0 4.5E-26 9.7E-31 213.7 26.2 282 139-460 176-485 (641)
51 KOG0645 WD40 repeat protein [G 100.0 9.1E-26 2E-30 196.1 26.1 206 225-462 7-225 (312)
52 KOG0313 Microtubule binding pr 100.0 6E-26 1.3E-30 205.7 25.4 295 127-457 101-413 (423)
53 KOG0268 Sof1-like rRNA process 99.9 3.4E-27 7.4E-32 212.5 14.7 260 190-459 67-342 (433)
54 KOG1446 Histone H3 (Lys4) meth 99.9 1.7E-24 3.7E-29 192.5 31.6 261 135-451 19-294 (311)
55 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.3E-31 212.5 17.3 265 138-457 183-456 (459)
56 KOG0319 WD40-repeat-containing 99.9 1E-25 2.2E-30 219.7 24.5 270 133-457 284-572 (775)
57 KOG0640 mRNA cleavage stimulat 99.9 2.2E-25 4.8E-30 196.9 24.4 212 186-430 109-345 (430)
58 KOG0292 Vesicle coat complex C 99.9 1.8E-25 3.8E-30 221.5 26.1 254 148-454 28-314 (1202)
59 KOG0299 U3 snoRNP-associated p 99.9 6.9E-25 1.5E-29 203.4 28.4 292 133-467 145-461 (479)
60 KOG0264 Nucleosome remodeling 99.9 9.3E-26 2E-30 209.2 22.5 234 198-462 136-403 (422)
61 KOG0292 Vesicle coat complex C 99.9 8.3E-26 1.8E-30 223.8 22.6 233 190-457 10-275 (1202)
62 KOG0313 Microtubule binding pr 99.9 2.2E-25 4.8E-30 202.0 22.7 235 187-457 103-371 (423)
63 KOG0316 Conserved WD40 repeat- 99.9 6.6E-25 1.4E-29 187.0 24.1 260 136-453 23-291 (307)
64 PTZ00420 coronin; Provisional 99.9 3.7E-24 7.9E-29 215.5 33.7 217 205-457 50-288 (568)
65 KOG0269 WD40 repeat-containing 99.9 5.9E-26 1.3E-30 222.3 19.8 234 192-457 90-335 (839)
66 KOG0293 WD40 repeat-containing 99.9 2E-25 4.4E-30 204.1 20.9 235 191-458 226-509 (519)
67 KOG0277 Peroxisomal targeting 99.9 3.6E-25 7.9E-30 190.7 21.1 217 207-457 36-260 (311)
68 KOG0274 Cdc4 and related F-box 99.9 9.6E-25 2.1E-29 219.0 27.7 249 148-457 225-477 (537)
69 KOG0283 WD40 repeat-containing 99.9 2.3E-25 5E-30 221.0 22.7 235 187-456 265-570 (712)
70 KOG0289 mRNA splicing factor [ 99.9 4.6E-25 1E-29 203.0 23.0 237 184-456 214-456 (506)
71 KOG0973 Histone transcription 99.9 9.8E-25 2.1E-29 221.8 27.7 241 189-463 69-355 (942)
72 KOG4283 Transcription-coupled 99.9 4.8E-25 1E-29 193.6 21.6 206 188-424 42-280 (397)
73 KOG0308 Conserved WD40 repeat- 99.9 7.5E-26 1.6E-30 217.6 17.6 226 198-456 36-279 (735)
74 KOG0278 Serine/threonine kinas 99.9 1E-25 2.3E-30 193.5 16.5 268 190-468 15-302 (334)
75 KOG0289 mRNA splicing factor [ 99.9 3.5E-24 7.7E-29 197.2 25.0 231 190-456 262-500 (506)
76 KOG0296 Angio-associated migra 99.9 6.5E-24 1.4E-28 191.7 26.0 245 191-473 66-374 (399)
77 KOG0265 U5 snRNP-specific prot 99.9 7.8E-24 1.7E-28 186.6 25.5 257 138-417 55-335 (338)
78 KOG1036 Mitotic spindle checkp 99.9 1.1E-23 2.4E-28 186.5 26.6 263 133-452 16-294 (323)
79 KOG0308 Conserved WD40 repeat- 99.9 3.4E-25 7.5E-30 213.1 18.3 281 141-458 36-323 (735)
80 KOG0641 WD40 repeat protein [G 99.9 2.8E-23 6.2E-28 176.0 27.0 233 191-457 34-298 (350)
81 KOG0310 Conserved WD40 repeat- 99.9 2.7E-24 6E-29 200.9 21.3 231 190-459 27-265 (487)
82 KOG1446 Histone H3 (Lys4) meth 99.9 8.1E-23 1.8E-27 181.9 29.3 232 189-457 14-257 (311)
83 KOG1407 WD40 repeat protein [F 99.9 1.5E-24 3.3E-29 187.6 17.7 198 226-456 14-255 (313)
84 KOG0275 Conserved WD40 repeat- 99.9 7.6E-25 1.7E-29 194.6 15.0 232 191-456 215-461 (508)
85 KOG0306 WD40-repeat-containing 99.9 4.7E-23 1E-27 201.4 27.7 249 173-459 357-619 (888)
86 KOG1332 Vesicle coat complex C 99.9 5.3E-24 1.1E-28 182.5 18.6 241 195-466 19-290 (299)
87 KOG0278 Serine/threonine kinas 99.9 1.4E-24 3E-29 186.6 14.8 219 149-423 79-300 (334)
88 KOG0772 Uncharacterized conser 99.9 7.7E-24 1.7E-28 198.8 21.0 259 191-468 169-447 (641)
89 KOG0275 Conserved WD40 repeat- 99.9 4.2E-24 9.1E-29 189.9 17.9 277 135-457 218-504 (508)
90 KOG0294 WD40 repeat-containing 99.9 2.9E-23 6.4E-28 184.1 22.8 233 188-458 42-277 (362)
91 KOG0282 mRNA splicing factor [ 99.9 2.6E-24 5.7E-29 200.7 16.6 257 138-418 222-503 (503)
92 KOG0274 Cdc4 and related F-box 99.9 1.8E-23 3.9E-28 209.9 23.7 228 188-457 207-436 (537)
93 KOG1539 WD repeat protein [Gen 99.9 1.1E-21 2.4E-26 194.0 35.5 260 190-455 203-640 (910)
94 KOG0647 mRNA export protein (c 99.9 1.1E-22 2.4E-27 179.5 23.4 258 190-453 28-315 (347)
95 KOG2055 WD40 repeat protein [G 99.9 7.9E-22 1.7E-26 183.2 29.4 276 133-457 216-507 (514)
96 KOG1274 WD40 repeat protein [G 99.9 3.7E-22 8E-27 199.4 28.9 277 128-462 10-300 (933)
97 KOG0267 Microtubule severing p 99.9 1.1E-24 2.4E-29 211.9 10.6 227 191-453 30-259 (825)
98 KOG0973 Histone transcription 99.9 1.5E-22 3.2E-27 206.1 25.1 235 191-458 15-308 (942)
99 KOG0293 WD40 repeat-containing 99.9 4.3E-23 9.3E-28 188.9 18.4 233 136-421 275-514 (519)
100 KOG0264 Nucleosome remodeling 99.9 1.5E-22 3.2E-27 188.1 22.2 198 192-420 180-404 (422)
101 KOG2096 WD40 repeat protein [G 99.9 1.9E-22 4E-27 179.2 21.9 260 190-457 87-397 (420)
102 KOG0305 Anaphase promoting com 99.9 2.9E-22 6.3E-27 194.2 24.1 236 134-422 221-463 (484)
103 KOG0639 Transducin-like enhanc 99.9 9.1E-23 2E-27 190.9 19.0 267 138-455 427-697 (705)
104 KOG0301 Phospholipase A2-activ 99.9 1.3E-21 2.9E-26 189.9 26.1 268 129-459 12-285 (745)
105 KOG1274 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 194.4 26.2 229 191-456 15-256 (933)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.8E-20 1.9E-24 174.2 37.1 266 149-442 9-300 (300)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-20 1.1E-24 175.7 35.0 248 199-455 1-272 (300)
108 KOG0639 Transducin-like enhanc 99.9 1.4E-22 3.1E-27 189.6 16.2 233 189-457 419-658 (705)
109 KOG2106 Uncharacterized conser 99.9 6.7E-20 1.5E-24 172.1 33.9 285 142-454 213-513 (626)
110 KOG0300 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 173.2 21.6 256 149-457 168-471 (481)
111 KOG0641 WD40 repeat protein [G 99.9 2.6E-20 5.7E-25 158.1 28.0 239 188-457 88-344 (350)
112 KOG0283 WD40 repeat-containing 99.9 4.4E-21 9.6E-26 190.8 26.5 194 190-420 370-576 (712)
113 KOG0270 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 181.5 20.3 234 198-464 191-450 (463)
114 KOG0288 WD40 repeat protein Ti 99.9 1.4E-22 3E-27 185.8 14.0 234 186-457 172-412 (459)
115 KOG2048 WD40 repeat protein [G 99.9 1.4E-20 3E-25 182.6 27.5 237 188-460 24-273 (691)
116 KOG0646 WD40 repeat protein [G 99.9 1.9E-21 4.2E-26 181.0 20.5 223 190-448 82-335 (476)
117 KOG0640 mRNA cleavage stimulat 99.9 6.5E-22 1.4E-26 175.1 16.3 211 222-467 102-339 (430)
118 KOG2919 Guanine nucleotide-bin 99.9 5.6E-21 1.2E-25 170.2 21.9 285 133-453 52-361 (406)
119 KOG0299 U3 snoRNP-associated p 99.9 3.6E-21 7.7E-26 178.9 20.8 241 188-464 141-411 (479)
120 KOG0300 WD40 repeat-containing 99.9 2.3E-21 4.9E-26 172.2 18.5 251 191-454 150-420 (481)
121 KOG1332 Vesicle coat complex C 99.9 3.5E-21 7.6E-26 165.3 18.9 226 147-419 29-285 (299)
122 KOG0269 WD40 repeat-containing 99.9 1.4E-21 3E-26 191.9 17.4 185 235-450 90-281 (839)
123 KOG1273 WD40 repeat protein [G 99.9 1.4E-20 3E-25 167.1 21.9 266 179-450 13-311 (405)
124 KOG1408 WD40 repeat protein [F 99.9 1.6E-20 3.5E-25 182.6 24.2 263 192-456 327-665 (1080)
125 KOG0301 Phospholipase A2-activ 99.9 3.9E-21 8.4E-26 186.7 19.9 229 188-457 13-244 (745)
126 KOG2445 Nuclear pore complex c 99.9 6.1E-20 1.3E-24 162.7 25.7 239 188-457 12-313 (361)
127 KOG0294 WD40 repeat-containing 99.9 5.7E-20 1.2E-24 163.4 25.4 228 138-422 50-283 (362)
128 KOG0267 Microtubule severing p 99.9 8.5E-23 1.8E-27 198.9 7.2 213 203-457 8-221 (825)
129 KOG0643 Translation initiation 99.9 4.3E-20 9.3E-25 160.6 22.8 198 227-457 5-215 (327)
130 KOG2096 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 167.1 20.1 238 226-469 80-366 (420)
131 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.4E-25 175.5 19.4 233 189-450 186-438 (498)
132 KOG0307 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 200.6 14.0 238 189-457 64-322 (1049)
133 KOG2055 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 175.4 19.4 234 185-452 209-455 (514)
134 KOG0646 WD40 repeat protein [G 99.9 2E-20 4.3E-25 174.3 19.8 217 138-403 89-332 (476)
135 KOG1408 WD40 repeat protein [F 99.9 1.9E-20 4.1E-25 182.1 20.5 233 191-456 461-707 (1080)
136 KOG0268 Sof1-like rRNA process 99.9 5.2E-21 1.1E-25 172.8 15.1 226 148-423 86-348 (433)
137 KOG0270 WD40 repeat-containing 99.9 5.9E-20 1.3E-24 170.2 22.0 202 190-425 244-454 (463)
138 KOG0647 mRNA export protein (c 99.9 1.4E-19 3.1E-24 160.0 23.2 240 148-409 47-312 (347)
139 KOG0302 Ribosome Assembly prot 99.9 7E-20 1.5E-24 166.3 20.3 233 191-454 156-431 (440)
140 KOG0302 Ribosome Assembly prot 99.9 8.1E-20 1.8E-24 165.9 19.8 195 192-418 214-436 (440)
141 KOG4378 Nuclear protein COP1 [ 99.8 8.5E-20 1.9E-24 171.0 19.7 210 198-444 90-305 (673)
142 KOG1036 Mitotic spindle checkp 99.8 3.3E-19 7.2E-24 158.3 22.3 233 190-462 14-262 (323)
143 KOG1539 WD repeat protein [Gen 99.8 1.7E-17 3.6E-22 164.7 34.5 259 192-457 162-601 (910)
144 KOG2048 WD40 repeat protein [G 99.8 7.9E-18 1.7E-22 163.6 29.8 269 134-457 29-314 (691)
145 KOG4283 Transcription-coupled 99.8 3E-19 6.5E-24 157.3 17.7 210 227-457 38-271 (397)
146 KOG1524 WD40 repeat-containing 99.8 6.8E-19 1.5E-23 166.4 20.2 261 135-456 19-280 (737)
147 KOG0303 Actin-binding protein 99.8 6.9E-19 1.5E-23 160.8 19.6 234 208-474 56-306 (472)
148 KOG1034 Transcriptional repres 99.8 2.1E-18 4.5E-23 154.3 20.7 222 199-456 105-377 (385)
149 KOG2106 Uncharacterized conser 99.8 9.3E-17 2E-21 151.2 31.2 227 138-418 254-519 (626)
150 KOG0650 WD40 repeat nucleolar 99.8 4.1E-18 8.8E-23 163.2 21.4 264 188-458 399-731 (733)
151 KOG1007 WD repeat protein TSSC 99.8 5.9E-18 1.3E-22 148.9 20.6 247 207-456 38-355 (370)
152 KOG1063 RNA polymerase II elon 99.8 7.7E-17 1.7E-21 157.1 30.2 299 141-463 24-392 (764)
153 KOG1009 Chromatin assembly com 99.8 1E-17 2.2E-22 153.9 22.0 254 189-466 13-375 (434)
154 KOG0307 Vesicle coat complex C 99.8 2.7E-19 5.8E-24 183.4 12.9 245 133-423 67-330 (1049)
155 KOG2445 Nuclear pore complex c 99.8 3.8E-17 8.2E-22 145.1 24.8 270 128-442 10-342 (361)
156 KOG1063 RNA polymerase II elon 99.8 2.4E-17 5.3E-22 160.5 23.4 314 128-459 264-645 (764)
157 KOG1273 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 148.8 19.1 187 235-457 26-221 (405)
158 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-17 2.6E-22 156.8 18.9 179 190-402 122-305 (673)
159 KOG2110 Uncharacterized conser 99.8 3.7E-16 8.1E-21 142.2 26.9 225 191-457 7-243 (391)
160 KOG1538 Uncharacterized conser 99.8 7.5E-17 1.6E-21 156.2 23.3 265 132-457 14-288 (1081)
161 KOG0322 G-protein beta subunit 99.8 1E-17 2.2E-22 145.6 15.4 263 188-457 13-318 (323)
162 PRK11028 6-phosphogluconolacto 99.8 1.5E-15 3.3E-20 147.3 32.5 230 194-456 41-298 (330)
163 KOG0303 Actin-binding protein 99.8 1.9E-16 4.2E-21 144.9 23.7 225 188-443 80-320 (472)
164 KOG4328 WD40 protein [Function 99.8 1.6E-16 3.5E-21 148.0 23.1 255 151-452 210-484 (498)
165 KOG0321 WD40 repeat-containing 99.8 4.3E-17 9.3E-22 157.4 18.6 264 190-463 101-391 (720)
166 KOG0649 WD40 repeat protein [G 99.8 3.2E-16 6.9E-21 134.9 21.6 226 194-451 17-263 (325)
167 KOG1517 Guanine nucleotide bin 99.8 1.8E-16 3.9E-21 160.9 23.4 275 133-456 1067-1375(1387)
168 KOG1587 Cytoplasmic dynein int 99.7 7.2E-16 1.6E-20 154.1 25.4 251 189-457 242-511 (555)
169 KOG0290 Conserved WD40 repeat- 99.7 6.1E-16 1.3E-20 136.4 21.7 227 191-451 98-355 (364)
170 KOG0650 WD40 repeat nucleolar 99.7 6.1E-17 1.3E-21 155.3 16.7 232 221-457 389-675 (733)
171 COG2319 FOG: WD40 repeat [Gene 99.7 7.6E-15 1.6E-19 145.6 32.7 232 190-455 66-307 (466)
172 KOG0290 Conserved WD40 repeat- 99.7 1.9E-16 4E-21 139.7 18.2 238 131-411 97-357 (364)
173 KOG1188 WD40 repeat protein [G 99.7 3.3E-16 7.1E-21 141.1 19.9 231 200-463 41-297 (376)
174 KOG1445 Tumor-specific antigen 99.7 1.7E-17 3.6E-22 159.9 12.3 182 253-464 599-796 (1012)
175 KOG0771 Prolactin regulatory e 99.7 5.4E-17 1.2E-21 150.1 15.1 191 236-459 148-351 (398)
176 KOG0321 WD40 repeat-containing 99.7 1.7E-16 3.7E-21 153.3 18.3 265 124-422 93-393 (720)
177 PRK01742 tolB translocation pr 99.7 1E-15 2.2E-20 153.4 23.4 209 208-459 183-398 (429)
178 KOG1523 Actin-related protein 99.7 6.7E-16 1.5E-20 138.0 19.4 231 190-453 11-269 (361)
179 COG2319 FOG: WD40 repeat [Gene 99.7 6.2E-14 1.4E-18 139.0 35.8 265 138-454 73-351 (466)
180 KOG4532 WD40-like repeat conta 99.7 3.3E-15 7.3E-20 130.5 22.7 278 126-454 26-324 (344)
181 KOG1445 Tumor-specific antigen 99.7 3.3E-16 7.1E-21 151.1 16.6 237 193-452 585-833 (1012)
182 KOG2919 Guanine nucleotide-bin 99.7 5.1E-16 1.1E-20 138.8 16.5 217 150-411 132-361 (406)
183 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-16 7.2E-21 149.6 16.3 208 189-431 344-572 (577)
184 PRK01742 tolB translocation pr 99.7 2.5E-15 5.4E-20 150.6 23.6 211 191-443 205-426 (429)
185 KOG0322 G-protein beta subunit 99.7 6.1E-16 1.3E-20 134.7 16.1 241 143-419 26-322 (323)
186 KOG2110 Uncharacterized conser 99.7 2E-14 4.3E-19 131.1 24.8 192 190-421 47-249 (391)
187 PRK11028 6-phosphogluconolacto 99.7 6.3E-14 1.4E-18 136.0 30.2 217 202-452 5-247 (330)
188 KOG3881 Uncharacterized conser 99.7 8.5E-15 1.9E-19 134.3 22.2 235 187-443 103-342 (412)
189 KOG1007 WD repeat protein TSSC 99.7 2.7E-15 5.9E-20 132.3 17.5 201 189-421 123-362 (370)
190 PRK02889 tolB translocation pr 99.7 2.6E-14 5.7E-19 143.1 25.9 213 209-459 176-397 (427)
191 KOG4227 WD40 repeat protein [G 99.7 1.2E-14 2.5E-19 133.1 20.3 237 190-459 57-384 (609)
192 KOG0771 Prolactin regulatory e 99.7 1.8E-15 3.9E-20 140.1 15.2 196 191-421 148-355 (398)
193 KOG1009 Chromatin assembly com 99.7 4.6E-15 1E-19 136.5 17.1 188 231-450 12-248 (434)
194 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-15 5.7E-20 143.5 15.8 199 227-457 289-556 (577)
195 KOG2394 WD40 protein DMR-N9 [G 99.7 6.9E-15 1.5E-19 139.8 18.1 200 198-442 184-384 (636)
196 PRK03629 tolB translocation pr 99.7 1.1E-13 2.5E-18 138.4 28.2 210 209-458 179-399 (429)
197 PRK05137 tolB translocation pr 99.6 1.8E-13 3.9E-18 137.7 28.2 206 209-454 182-398 (435)
198 KOG2111 Uncharacterized conser 99.6 3.2E-13 7E-18 121.0 26.1 231 192-462 51-322 (346)
199 PRK03629 tolB translocation pr 99.6 1.9E-13 4.1E-18 136.8 27.9 213 191-443 200-428 (429)
200 KOG1034 Transcriptional repres 99.6 1.1E-14 2.5E-19 130.6 15.9 234 190-455 39-330 (385)
201 KOG2394 WD40 protein DMR-N9 [G 99.6 1E-14 2.2E-19 138.7 16.4 188 148-400 192-384 (636)
202 KOG1272 WD40-repeat-containing 99.6 9.4E-16 2E-20 143.2 9.2 216 194-450 134-351 (545)
203 PRK04922 tolB translocation pr 99.6 1.5E-13 3.2E-18 138.1 25.8 214 209-462 184-408 (433)
204 KOG1538 Uncharacterized conser 99.6 1.6E-14 3.4E-19 140.4 17.7 223 191-456 14-246 (1081)
205 KOG2111 Uncharacterized conser 99.6 3.3E-13 7.1E-18 120.9 24.6 230 191-458 7-252 (346)
206 PF08662 eIF2A: Eukaryotic tra 99.6 1E-13 2.2E-18 122.8 21.2 111 310-427 64-185 (194)
207 KOG1587 Cytoplasmic dynein int 99.6 6.6E-14 1.4E-18 140.1 22.0 244 134-421 246-517 (555)
208 KOG1188 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 130.1 15.9 179 249-456 42-236 (376)
209 KOG0644 Uncharacterized conser 99.6 1.3E-15 2.9E-20 151.2 8.8 234 190-466 191-469 (1113)
210 PRK04922 tolB translocation pr 99.6 3.6E-13 7.7E-18 135.3 26.6 212 191-442 205-432 (433)
211 KOG1524 WD40 repeat-containing 99.6 3.5E-14 7.5E-19 134.9 17.2 170 249-453 77-247 (737)
212 KOG2139 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 125.3 20.0 230 189-455 98-368 (445)
213 KOG2139 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 125.9 18.9 185 233-453 99-301 (445)
214 KOG0649 WD40 repeat protein [G 99.6 2.5E-12 5.4E-17 111.1 25.3 229 187-456 60-310 (325)
215 KOG4497 Uncharacterized conser 99.6 1.2E-12 2.6E-17 117.7 24.2 293 137-456 15-426 (447)
216 KOG1523 Actin-related protein 99.6 7.9E-14 1.7E-18 124.9 16.2 195 231-457 9-231 (361)
217 PRK05137 tolB translocation pr 99.6 2.4E-12 5.2E-17 129.5 28.0 212 191-443 203-433 (435)
218 PF08662 eIF2A: Eukaryotic tra 99.6 3.4E-13 7.5E-18 119.4 19.0 138 310-453 10-164 (194)
219 KOG1963 WD40 repeat protein [G 99.6 1.4E-12 3E-17 131.2 25.2 257 198-460 27-320 (792)
220 PRK02889 tolB translocation pr 99.6 1.6E-12 3.6E-17 130.1 25.5 213 191-443 197-425 (427)
221 KOG1963 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 127.4 27.8 274 134-451 164-528 (792)
222 KOG1517 Guanine nucleotide bin 99.5 1.1E-12 2.3E-17 134.0 23.0 233 198-452 1075-1324(1387)
223 KOG1240 Protein kinase contain 99.5 1.9E-12 4.2E-17 134.1 25.1 254 172-457 1029-1329(1431)
224 PF02239 Cytochrom_D1: Cytochr 99.5 8E-11 1.7E-15 114.7 35.1 283 149-455 14-338 (369)
225 TIGR02800 propeller_TolB tol-p 99.5 9.7E-12 2.1E-16 124.8 29.7 211 209-459 170-391 (417)
226 KOG1272 WD40-repeat-containing 99.5 3.3E-14 7.2E-19 133.0 10.1 253 138-451 137-398 (545)
227 KOG1310 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 129.5 14.1 210 188-429 49-312 (758)
228 TIGR02800 propeller_TolB tol-p 99.5 1.8E-11 3.9E-16 122.9 27.8 210 192-441 192-417 (417)
229 KOG3881 Uncharacterized conser 99.5 3E-12 6.6E-17 117.7 19.7 234 190-457 56-315 (412)
230 PRK01029 tolB translocation pr 99.5 2.6E-11 5.6E-16 121.0 28.1 210 209-454 165-392 (428)
231 PRK00178 tolB translocation pr 99.5 2.9E-11 6.4E-16 121.7 28.2 211 210-460 180-401 (430)
232 KOG0644 Uncharacterized conser 99.5 9.6E-14 2.1E-18 138.2 9.4 267 125-423 184-471 (1113)
233 PF10282 Lactonase: Lactonase, 99.5 9.6E-10 2.1E-14 107.0 37.0 243 194-456 43-315 (345)
234 PRK04792 tolB translocation pr 99.5 3.5E-11 7.7E-16 121.0 27.8 210 210-459 199-419 (448)
235 KOG1310 WD40 repeat protein [G 99.5 9.1E-13 2E-17 125.8 14.5 162 226-419 44-230 (758)
236 KOG0280 Uncharacterized conser 99.5 1.6E-11 3.5E-16 109.0 21.1 215 207-443 44-264 (339)
237 KOG4227 WD40 repeat protein [G 99.5 1.4E-12 3.1E-17 119.6 14.7 196 221-449 45-261 (609)
238 COG2706 3-carboxymuconate cycl 99.5 6.7E-10 1.5E-14 102.1 32.0 248 193-465 43-321 (346)
239 PRK00178 tolB translocation pr 99.4 9.2E-11 2E-15 118.1 28.2 213 191-443 200-428 (430)
240 PRK04792 tolB translocation pr 99.4 6E-11 1.3E-15 119.3 26.1 213 191-443 219-447 (448)
241 KOG1354 Serine/threonine prote 99.4 1.7E-11 3.6E-16 111.1 19.5 259 191-456 27-353 (433)
242 KOG2321 WD40 repeat protein [G 99.4 3.9E-11 8.4E-16 115.5 21.6 261 192-460 54-341 (703)
243 KOG4497 Uncharacterized conser 99.4 1E-11 2.2E-16 111.8 16.2 187 243-463 17-241 (447)
244 KOG0974 WD-repeat protein WDR6 99.4 2.4E-11 5.3E-16 124.5 20.2 194 245-466 98-292 (967)
245 PF02239 Cytochrom_D1: Cytochr 99.4 1.9E-09 4.1E-14 105.1 32.7 194 200-428 6-210 (369)
246 KOG1334 WD40 repeat protein [G 99.4 2.3E-12 4.9E-17 121.6 11.6 251 190-473 143-441 (559)
247 KOG4547 WD40 repeat-containing 99.4 8.7E-11 1.9E-15 113.8 22.6 191 249-450 7-207 (541)
248 KOG2321 WD40 repeat protein [G 99.4 5.3E-11 1.1E-15 114.6 20.7 235 230-469 49-308 (703)
249 PF10282 Lactonase: Lactonase, 99.4 7.9E-09 1.7E-13 100.7 36.6 261 133-440 39-345 (345)
250 KOG0280 Uncharacterized conser 99.4 9.6E-11 2.1E-15 104.2 19.2 235 191-457 71-327 (339)
251 KOG4547 WD40 repeat-containing 99.3 1.8E-10 3.8E-15 111.7 21.1 190 199-420 5-220 (541)
252 KOG1334 WD40 repeat protein [G 99.3 1.6E-11 3.5E-16 115.9 13.1 289 128-459 139-463 (559)
253 COG4946 Uncharacterized protei 99.3 1E-09 2.2E-14 103.7 24.9 230 133-409 271-507 (668)
254 PRK04043 tolB translocation pr 99.3 3.5E-09 7.5E-14 105.2 30.1 192 234-463 189-398 (419)
255 KOG0974 WD-repeat protein WDR6 99.3 7.6E-11 1.6E-15 120.9 17.9 191 195-421 95-289 (967)
256 PRK01029 tolB translocation pr 99.3 2E-09 4.3E-14 107.6 27.6 198 209-444 211-426 (428)
257 KOG2315 Predicted translation 99.3 4.1E-09 8.9E-14 101.7 26.8 241 198-453 44-375 (566)
258 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.2E-08 9.2E-13 93.7 33.1 256 151-429 27-339 (352)
259 KOG2314 Translation initiation 99.3 4.4E-09 9.4E-14 101.2 25.2 258 191-455 253-560 (698)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.6E-08 1E-12 93.5 32.1 228 209-452 27-319 (352)
261 COG5170 CDC55 Serine/threonine 99.2 3.6E-10 7.9E-15 101.2 15.6 258 190-457 27-362 (460)
262 KOG1240 Protein kinase contain 99.2 1.7E-09 3.7E-14 112.8 21.3 196 225-452 1041-1261(1431)
263 COG2706 3-carboxymuconate cycl 99.2 1.9E-08 4.1E-13 92.7 25.8 210 208-450 15-261 (346)
264 KOG1354 Serine/threonine prote 99.2 6.7E-10 1.5E-14 100.9 15.2 208 190-422 85-361 (433)
265 KOG1064 RAVE (regulator of V-A 99.2 1.4E-10 2.9E-15 124.6 12.1 210 198-455 2219-2439(2439)
266 KOG2041 WD40 repeat protein [G 99.2 6.5E-10 1.4E-14 109.6 15.9 233 188-455 13-281 (1189)
267 COG4946 Uncharacterized protei 99.2 3.8E-08 8.2E-13 93.3 26.6 217 198-450 277-506 (668)
268 KOG2315 Predicted translation 99.1 2.2E-08 4.8E-13 96.8 22.7 197 205-442 190-410 (566)
269 PLN02919 haloacid dehalogenase 99.1 1.4E-07 3E-12 103.8 31.0 241 198-456 579-882 (1057)
270 PF08450 SGL: SMP-30/Gluconola 99.1 1.3E-06 2.7E-11 81.0 32.5 212 198-452 11-245 (246)
271 TIGR03300 assembly_YfgL outer 99.1 4.7E-07 1E-11 89.6 31.0 279 142-456 65-373 (377)
272 PRK04043 tolB translocation pr 99.1 1E-07 2.3E-12 94.7 26.1 206 192-439 190-418 (419)
273 KOG0309 Conserved WD40 repeat- 99.1 1.8E-09 4E-14 106.9 12.9 242 184-457 62-334 (1081)
274 PLN02919 haloacid dehalogenase 99.0 1.6E-06 3.5E-11 95.6 33.7 214 193-424 627-892 (1057)
275 PF04762 IKI3: IKI3 family; I 99.0 3.6E-07 7.7E-12 98.9 27.9 255 189-456 75-373 (928)
276 KOG1409 Uncharacterized conser 98.9 9.4E-08 2E-12 87.2 18.0 242 130-421 23-271 (404)
277 PF04762 IKI3: IKI3 family; I 98.9 1E-06 2.2E-11 95.5 28.7 203 231-473 74-341 (928)
278 KOG2041 WD40 repeat protein [G 98.9 2.7E-07 5.8E-12 91.7 21.2 283 130-451 14-327 (1189)
279 KOG1832 HIV-1 Vpr-binding prot 98.9 1.1E-09 2.4E-14 110.4 4.9 241 190-450 1102-1377(1516)
280 KOG1064 RAVE (regulator of V-A 98.9 6.3E-09 1.4E-13 112.2 10.7 178 235-457 2211-2393(2439)
281 KOG4714 Nucleoporin [Nuclear s 98.9 6.5E-09 1.4E-13 91.2 8.8 95 327-421 159-255 (319)
282 KOG3914 WD repeat protein WDR4 98.9 3.5E-08 7.7E-13 91.8 13.8 156 198-387 73-232 (390)
283 KOG1275 PAB-dependent poly(A) 98.9 5.3E-08 1.1E-12 99.1 15.5 181 198-418 146-340 (1118)
284 KOG2066 Vacuolar assembly/sort 98.9 1.1E-07 2.5E-12 95.7 17.7 182 190-421 40-234 (846)
285 KOG1409 Uncharacterized conser 98.9 9.6E-08 2.1E-12 87.1 15.4 216 226-473 18-282 (404)
286 COG5354 Uncharacterized protei 98.8 2.1E-06 4.6E-11 82.4 24.1 218 190-454 174-421 (561)
287 COG5354 Uncharacterized protei 98.8 3.3E-06 7.2E-11 81.1 24.6 276 129-464 31-347 (561)
288 PF08450 SGL: SMP-30/Gluconola 98.8 4.1E-05 8.9E-10 70.9 31.6 217 136-409 5-244 (246)
289 KOG4190 Uncharacterized conser 98.8 2.3E-08 5E-13 96.2 9.6 203 191-429 737-957 (1034)
290 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.3E-12 88.7 13.3 116 310-427 112-230 (390)
291 PF00400 WD40: WD domain, G-be 98.8 3.3E-08 7.1E-13 62.7 6.6 39 337-375 1-39 (39)
292 KOG4190 Uncharacterized conser 98.8 1.7E-08 3.8E-13 97.0 7.2 169 226-429 729-915 (1034)
293 KOG2695 WD40 repeat protein [G 98.7 5E-08 1.1E-12 89.0 9.5 148 251-430 228-386 (425)
294 PF13360 PQQ_2: PQQ-like domai 98.7 4E-05 8.6E-10 70.4 28.3 222 150-427 2-237 (238)
295 KOG0882 Cyclophilin-related pe 98.7 1.4E-07 3.1E-12 88.9 10.7 203 191-426 11-237 (558)
296 PF11768 DUF3312: Protein of u 98.7 7.4E-05 1.6E-09 73.9 29.8 109 310-422 210-331 (545)
297 TIGR03300 assembly_YfgL outer 98.7 1.5E-05 3.3E-10 78.8 25.7 247 142-417 105-376 (377)
298 PF07433 DUF1513: Protein of u 98.6 7.6E-05 1.6E-09 69.2 27.4 173 243-450 59-274 (305)
299 PF13360 PQQ_2: PQQ-like domai 98.6 3.8E-05 8.2E-10 70.5 25.8 206 208-454 2-222 (238)
300 KOG1275 PAB-dependent poly(A) 98.6 6.5E-07 1.4E-11 91.4 14.5 176 250-460 150-340 (1118)
301 KOG4532 WD40-like repeat conta 98.6 5.4E-06 1.2E-10 73.5 18.4 169 249-445 86-263 (344)
302 COG5170 CDC55 Serine/threonine 98.6 5.7E-07 1.2E-11 81.1 12.5 204 191-419 87-366 (460)
303 KOG2314 Translation initiation 98.6 1.3E-06 2.7E-11 84.7 15.6 182 234-451 212-412 (698)
304 PF11768 DUF3312: Protein of u 98.6 2.8E-05 6.1E-10 76.8 25.2 67 310-378 264-330 (545)
305 PF07433 DUF1513: Protein of u 98.6 3.4E-05 7.3E-10 71.6 24.4 197 237-462 9-254 (305)
306 COG0823 TolB Periplasmic compo 98.6 5.5E-06 1.2E-10 82.0 19.7 184 233-451 193-388 (425)
307 KOG0309 Conserved WD40 repeat- 98.6 2E-07 4.4E-12 92.9 9.3 193 232-457 24-227 (1081)
308 KOG1912 WD40 repeat protein [G 98.6 1.3E-05 2.8E-10 80.8 21.7 237 134-421 18-305 (1062)
309 PF15492 Nbas_N: Neuroblastoma 98.6 0.00013 2.9E-09 65.8 25.5 243 136-427 3-266 (282)
310 KOG2114 Vacuolar assembly/sort 98.5 3.8E-05 8.3E-10 78.5 23.5 207 191-429 27-252 (933)
311 PF00400 WD40: WD domain, G-be 98.5 3.7E-07 8E-12 57.8 6.2 38 381-418 2-39 (39)
312 KOG4714 Nucleoporin [Nuclear s 98.5 8.3E-07 1.8E-11 78.2 9.6 68 310-377 184-254 (319)
313 PRK11138 outer membrane biogen 98.5 9.7E-05 2.1E-09 73.5 25.7 261 143-456 121-388 (394)
314 PRK02888 nitrous-oxide reducta 98.5 1.6E-05 3.4E-10 80.4 19.1 174 243-421 201-405 (635)
315 KOG1008 Uncharacterized conser 98.4 4.4E-08 9.5E-13 96.2 0.3 199 191-420 58-275 (783)
316 KOG2066 Vacuolar assembly/sort 98.4 7.5E-06 1.6E-10 82.9 15.7 170 234-450 41-222 (846)
317 KOG1912 WD40 repeat protein [G 98.4 5.4E-05 1.2E-09 76.5 20.7 235 190-457 16-299 (1062)
318 KOG1920 IkappaB kinase complex 98.4 6.6E-05 1.4E-09 79.6 22.1 206 233-473 69-330 (1265)
319 PF06977 SdiA-regulated: SdiA- 98.4 0.00053 1.2E-08 62.7 25.1 191 226-449 15-238 (248)
320 KOG1920 IkappaB kinase complex 98.3 0.00014 3.1E-09 77.2 22.8 224 190-422 69-324 (1265)
321 KOG2695 WD40 repeat protein [G 98.3 3.5E-06 7.6E-11 77.2 9.2 150 203-390 228-388 (425)
322 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0006 1.3E-08 66.7 25.8 251 194-454 49-349 (353)
323 PRK02888 nitrous-oxide reducta 98.3 0.00044 9.6E-09 70.2 23.7 95 358-456 287-398 (635)
324 COG3391 Uncharacterized conser 98.2 0.00042 9.1E-09 68.4 23.4 183 236-452 77-272 (381)
325 PRK11138 outer membrane biogen 98.2 0.0012 2.7E-08 65.6 27.0 194 195-427 116-319 (394)
326 KOG0882 Cyclophilin-related pe 98.2 1.1E-05 2.5E-10 76.4 10.2 194 231-458 8-227 (558)
327 PF03178 CPSF_A: CPSF A subuni 98.2 0.00092 2E-08 64.5 23.9 224 210-467 3-270 (321)
328 COG3386 Gluconolactonase [Carb 98.2 0.0016 3.4E-08 61.8 24.6 217 201-454 39-277 (307)
329 COG0823 TolB Periplasmic compo 98.2 4.8E-05 1E-09 75.4 14.8 140 310-453 197-346 (425)
330 PF08553 VID27: VID27 cytoplas 98.2 0.00015 3.3E-09 76.1 18.9 154 124-334 483-646 (794)
331 KOG2114 Vacuolar assembly/sort 98.1 0.00043 9.3E-09 71.1 19.7 178 243-451 32-233 (933)
332 PF08596 Lgl_C: Lethal giant l 98.1 0.0027 5.8E-08 62.5 25.0 235 191-450 3-324 (395)
333 PF08553 VID27: VID27 cytoplas 98.1 0.00042 9.1E-09 72.8 20.0 145 246-419 493-646 (794)
334 PF15492 Nbas_N: Neuroblastoma 98.0 0.0022 4.9E-08 58.0 21.5 208 127-386 40-267 (282)
335 PF14583 Pectate_lyase22: Olig 98.0 0.015 3.4E-07 55.9 30.7 245 198-452 46-370 (386)
336 KOG1832 HIV-1 Vpr-binding prot 98.0 4E-06 8.8E-11 85.5 3.9 143 310-456 1106-1256(1516)
337 KOG1008 Uncharacterized conser 98.0 1.6E-06 3.5E-11 85.5 0.5 191 234-457 58-269 (783)
338 KOG1645 RING-finger-containing 98.0 5E-05 1.1E-09 71.2 9.6 137 310-449 198-347 (463)
339 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.001 2.2E-08 65.1 19.5 188 243-462 1-265 (353)
340 COG3391 Uncharacterized conser 97.8 0.018 3.9E-07 56.9 25.8 209 198-443 84-309 (381)
341 KOG3621 WD40 repeat-containing 97.8 0.0098 2.1E-07 60.3 23.4 113 190-336 36-155 (726)
342 cd00216 PQQ_DH Dehydrogenases 97.8 0.04 8.7E-07 56.4 28.9 127 319-455 303-459 (488)
343 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.015 3.2E-07 52.1 21.3 141 199-376 23-164 (354)
344 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 71.8 9.6 90 310-400 25-115 (665)
345 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.0035 7.5E-08 56.0 16.8 146 243-419 19-164 (354)
346 cd00216 PQQ_DH Dehydrogenases 97.7 0.055 1.2E-06 55.4 28.0 237 200-456 111-418 (488)
347 KOG3621 WD40 repeat-containing 97.7 0.00046 9.9E-09 69.5 12.0 131 310-441 38-179 (726)
348 PF02897 Peptidase_S9_N: Proly 97.7 0.059 1.3E-06 54.0 27.6 198 237-465 128-357 (414)
349 PF04841 Vps16_N: Vps16, N-ter 97.7 0.076 1.6E-06 52.9 28.6 99 313-418 186-285 (410)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.031 6.8E-07 55.7 24.7 85 355-444 186-271 (410)
351 smart00320 WD40 WD40 repeats. 97.6 0.00018 4E-09 44.0 5.6 39 337-375 2-40 (40)
352 PF04053 Coatomer_WDAD: Coatom 97.6 0.018 4E-07 57.5 22.2 208 193-456 36-256 (443)
353 PF03178 CPSF_A: CPSF A subuni 97.6 0.077 1.7E-06 51.1 25.9 184 199-417 42-262 (321)
354 PF06977 SdiA-regulated: SdiA- 97.6 0.058 1.3E-06 49.4 24.0 195 191-417 23-247 (248)
355 PF08596 Lgl_C: Lethal giant l 97.6 0.0052 1.1E-07 60.5 17.6 224 189-418 86-333 (395)
356 KOG3617 WD40 and TPR repeat-co 97.6 0.0036 7.7E-08 64.5 16.2 244 191-449 61-372 (1416)
357 COG3386 Gluconolactonase [Carb 97.6 0.049 1.1E-06 51.7 23.2 98 310-409 167-274 (307)
358 PF00780 CNH: CNH domain; Int 97.6 0.076 1.6E-06 49.9 27.4 226 198-472 6-272 (275)
359 KOG2395 Protein involved in va 97.5 0.0022 4.7E-08 62.8 13.8 145 243-419 342-499 (644)
360 PF04053 Coatomer_WDAD: Coatom 97.5 0.078 1.7E-06 53.1 25.3 217 131-420 33-262 (443)
361 KOG3617 WD40 and TPR repeat-co 97.5 0.00019 4.1E-09 73.4 6.8 108 310-420 20-131 (1416)
362 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.014 2.9E-07 45.6 15.1 99 310-416 4-110 (111)
363 PRK13616 lipoprotein LpqB; Pro 97.5 0.016 3.6E-07 60.1 20.2 180 233-454 350-560 (591)
364 KOG4640 Anaphase-promoting com 97.4 0.0008 1.7E-08 67.0 9.4 93 348-442 21-115 (665)
365 PRK13616 lipoprotein LpqB; Pro 97.4 0.0047 1E-07 64.1 15.5 140 308-453 352-516 (591)
366 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.034 7.3E-07 43.5 16.1 103 235-372 2-109 (111)
367 KOG1645 RING-finger-containing 97.4 0.0018 4E-08 61.0 10.7 148 226-406 187-346 (463)
368 PF02897 Peptidase_S9_N: Proly 97.3 0.028 6.2E-07 56.3 20.1 151 310-463 128-307 (414)
369 COG3490 Uncharacterized protei 97.3 0.021 4.6E-07 51.9 16.6 144 310-453 72-246 (366)
370 PF06433 Me-amine-dh_H: Methyl 97.3 0.17 3.6E-06 48.1 29.6 221 195-450 43-306 (342)
371 KOG2395 Protein involved in va 97.3 0.0034 7.3E-08 61.5 11.8 135 315-452 343-491 (644)
372 PF05096 Glu_cyclase_2: Glutam 97.3 0.14 3.1E-06 46.8 25.8 187 229-451 41-249 (264)
373 smart00320 WD40 WD40 repeats. 97.2 0.0012 2.6E-08 40.1 5.6 38 381-418 3-40 (40)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.36 7.7E-06 49.9 32.7 76 195-274 116-198 (527)
375 PF00780 CNH: CNH domain; Int 97.1 0.25 5.3E-06 46.4 28.0 228 140-430 5-265 (275)
376 TIGR02604 Piru_Ver_Nterm putat 97.1 0.046 9.9E-07 53.8 18.0 142 310-454 18-205 (367)
377 PF10647 Gmad1: Lipoprotein Lp 97.1 0.046 1E-06 50.6 17.0 141 310-454 28-187 (253)
378 PHA02713 hypothetical protein; 97.1 0.019 4.2E-07 59.6 15.9 192 197-425 302-538 (557)
379 PF10313 DUF2415: Uncharacteri 97.1 0.0026 5.6E-08 40.2 5.7 38 391-428 1-41 (43)
380 PF05694 SBP56: 56kDa selenium 97.0 0.37 8.1E-06 47.1 24.8 225 198-450 86-391 (461)
381 PF14583 Pectate_lyase22: Olig 96.9 0.46 1E-05 46.0 29.8 259 137-418 42-379 (386)
382 PF10647 Gmad1: Lipoprotein Lp 96.8 0.41 8.9E-06 44.3 21.4 148 234-412 25-187 (253)
383 KOG4441 Proteins containing BT 96.8 0.1 2.2E-06 54.2 18.6 219 198-455 284-534 (571)
384 KOG4499 Ca2+-binding protein R 96.7 0.37 8.1E-06 42.8 19.5 131 310-442 113-263 (310)
385 PF14870 PSII_BNR: Photosynthe 96.7 0.58 1.3E-05 44.3 28.4 146 310-462 149-301 (302)
386 PF06433 Me-amine-dh_H: Methyl 96.5 0.77 1.7E-05 43.7 27.6 266 122-430 27-330 (342)
387 KOG2079 Vacuolar assembly/sort 96.5 0.0094 2E-07 63.2 8.5 97 316-413 98-198 (1206)
388 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 1 2.2E-05 46.6 23.3 193 198-425 68-338 (527)
389 COG3204 Uncharacterized protei 96.5 0.69 1.5E-05 42.7 20.1 189 229-450 82-301 (316)
390 TIGR03074 PQQ_membr_DH membran 96.4 1.7 3.7E-05 46.8 25.8 212 198-427 193-484 (764)
391 PF15390 DUF4613: Domain of un 96.4 0.24 5.1E-06 49.9 16.7 111 310-420 61-186 (671)
392 KOG2079 Vacuolar assembly/sort 96.4 0.0098 2.1E-07 63.1 7.6 97 358-454 98-197 (1206)
393 PHA03098 kelch-like protein; P 96.4 0.17 3.6E-06 52.7 16.9 192 194-423 290-514 (534)
394 PHA02713 hypothetical protein; 96.3 0.43 9.4E-06 49.7 19.2 133 315-454 350-523 (557)
395 PF14870 PSII_BNR: Photosynthe 96.2 1.2 2.7E-05 42.1 24.1 183 195-417 110-301 (302)
396 PF15390 DUF4613: Domain of un 96.1 0.83 1.8E-05 46.2 19.0 149 190-377 20-186 (671)
397 KOG2444 WD40 repeat protein [G 96.1 0.018 3.9E-07 50.7 6.8 105 316-421 69-178 (238)
398 PF12894 Apc4_WD40: Anaphase-p 96.1 0.024 5.2E-07 37.0 5.7 29 310-339 16-44 (47)
399 KOG4499 Ca2+-binding protein R 95.9 0.24 5.1E-06 44.0 12.6 125 208-364 138-271 (310)
400 COG3204 Uncharacterized protei 95.9 0.56 1.2E-05 43.3 15.5 143 310-452 90-252 (316)
401 PF08728 CRT10: CRT10; InterP 95.9 0.28 6E-06 51.4 15.3 176 129-334 35-245 (717)
402 COG3490 Uncharacterized protei 95.9 1.2 2.6E-05 40.9 17.2 140 243-409 76-244 (366)
403 KOG4441 Proteins containing BT 95.8 0.92 2E-05 47.3 18.8 189 195-423 329-549 (571)
404 KOG3630 Nuclear pore complex, 95.7 0.15 3.2E-06 54.9 12.4 138 310-449 105-260 (1405)
405 PF12894 Apc4_WD40: Anaphase-p 95.7 0.04 8.6E-07 36.0 5.4 34 390-424 11-44 (47)
406 PF05694 SBP56: 56kDa selenium 95.6 2.6 5.5E-05 41.5 22.7 149 312-463 136-340 (461)
407 KOG1897 Damage-specific DNA bi 95.5 4.6 0.0001 43.5 29.4 264 192-464 586-899 (1096)
408 KOG2444 WD40 repeat protein [G 95.4 0.056 1.2E-06 47.7 6.8 100 250-378 73-178 (238)
409 PRK10115 protease 2; Provision 95.3 5.1 0.00011 43.0 26.2 193 235-462 129-343 (686)
410 COG5167 VID27 Protein involved 95.2 0.39 8.4E-06 47.4 12.7 144 244-420 477-632 (776)
411 KOG1897 Damage-specific DNA bi 95.2 5.6 0.00012 42.9 28.5 87 370-460 471-564 (1096)
412 PRK13684 Ycf48-like protein; P 95.2 3.3 7.2E-05 40.1 21.4 104 310-418 219-329 (334)
413 PHA03098 kelch-like protein; P 95.1 0.94 2E-05 47.1 16.5 133 316-454 342-498 (534)
414 PF03022 MRJP: Major royal jel 95.1 3.1 6.7E-05 39.3 20.1 170 258-450 35-253 (287)
415 PF07995 GSDH: Glucose / Sorbo 95.1 2 4.3E-05 41.6 17.4 159 310-471 6-220 (331)
416 PHA02790 Kelch-like protein; P 95.0 1.6 3.4E-05 44.7 17.3 186 197-423 270-473 (480)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 4.6 9.9E-05 40.1 25.6 78 349-429 309-407 (415)
418 PF02333 Phytase: Phytase; In 94.6 4.8 0.0001 39.2 25.6 149 209-386 127-299 (381)
419 PF10168 Nup88: Nuclear pore c 94.4 1.1 2.3E-05 47.9 14.7 77 310-387 89-189 (717)
420 PF10168 Nup88: Nuclear pore c 94.3 1.3 2.8E-05 47.2 14.9 77 349-426 86-185 (717)
421 PF11635 Med16: Mediator compl 94.3 9.8 0.00021 41.3 22.2 74 391-464 260-352 (753)
422 PF12234 Rav1p_C: RAVE protein 94.2 3.2 6.9E-05 43.3 16.9 108 310-419 34-155 (631)
423 KOG3630 Nuclear pore complex, 94.1 0.96 2.1E-05 49.1 13.1 98 235-364 158-260 (1405)
424 PF12234 Rav1p_C: RAVE protein 93.9 2.8 6.1E-05 43.7 16.1 103 243-377 38-156 (631)
425 PLN02153 epithiospecifier prot 93.9 6.6 0.00014 38.1 22.1 27 195-221 29-62 (341)
426 TIGR02604 Piru_Ver_Nterm putat 93.6 8.1 0.00018 37.9 23.7 58 310-368 128-204 (367)
427 PF10313 DUF2415: Uncharacteri 93.4 0.43 9.4E-06 30.2 5.8 31 348-378 1-34 (43)
428 TIGR03547 muta_rot_YjhT mutatr 93.4 8.3 0.00018 37.4 22.3 42 413-454 291-332 (346)
429 PLN02193 nitrile-specifier pro 93.1 12 0.00025 38.3 19.8 105 316-424 278-414 (470)
430 PHA02790 Kelch-like protein; P 93.0 7.1 0.00015 39.9 17.5 130 315-453 317-456 (480)
431 KOG2247 WD40 repeat-containing 92.9 0.011 2.5E-07 57.4 -2.7 136 310-448 39-175 (615)
432 COG5167 VID27 Protein involved 92.9 1.6 3.4E-05 43.4 11.5 134 316-453 478-624 (776)
433 PF07995 GSDH: Glucose / Sorbo 92.9 9.5 0.00021 36.8 26.9 74 382-456 245-329 (331)
434 TIGR03606 non_repeat_PQQ dehyd 92.5 13 0.00028 37.4 20.8 101 310-410 34-165 (454)
435 PF08728 CRT10: CRT10; InterP 92.4 5 0.00011 42.4 15.2 103 316-419 113-245 (717)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 1.6 3.5E-05 43.2 11.1 77 308-387 310-407 (415)
437 KOG2377 Uncharacterized conser 92.3 4 8.7E-05 40.1 13.3 139 310-451 27-172 (657)
438 PF13449 Phytase-like: Esteras 92.1 12 0.00026 36.1 18.2 140 308-449 22-231 (326)
439 COG5276 Uncharacterized conser 92.1 10 0.00022 35.3 28.3 225 191-454 130-361 (370)
440 COG3823 Glutamine cyclotransfe 91.7 8.8 0.00019 33.8 14.4 174 245-451 55-247 (262)
441 PF12657 TFIIIC_delta: Transcr 91.4 1.1 2.4E-05 38.8 8.0 30 391-420 86-121 (173)
442 KOG2377 Uncharacterized conser 91.4 6.4 0.00014 38.8 13.5 98 310-409 71-172 (657)
443 TIGR02276 beta_rpt_yvtn 40-res 91.2 1.3 2.9E-05 27.6 6.4 41 400-441 1-42 (42)
444 KOG4460 Nuclear pore complex, 91.2 3 6.6E-05 41.6 11.3 78 349-426 105-204 (741)
445 KOG1916 Nuclear protein, conta 91.1 0.23 5E-06 52.2 3.9 109 316-425 194-328 (1283)
446 PF05096 Glu_cyclase_2: Glutam 91.0 13 0.00028 34.3 24.8 178 192-408 47-249 (264)
447 COG3823 Glutamine cyclotransfe 90.9 8.7 0.00019 33.8 12.6 76 198-278 55-132 (262)
448 PF07250 Glyoxal_oxid_N: Glyox 90.6 13 0.00028 34.0 14.3 143 289-434 46-211 (243)
449 PF07569 Hira: TUP1-like enhan 90.1 2.4 5.2E-05 38.2 9.2 78 190-271 13-101 (219)
450 KOG2247 WD40 repeat-containing 89.9 0.041 8.9E-07 53.8 -2.4 141 233-408 33-177 (615)
451 PF07569 Hira: TUP1-like enhan 89.9 2.1 4.6E-05 38.6 8.7 67 355-422 18-97 (219)
452 PF11715 Nup160: Nucleoporin N 89.6 2.4 5.3E-05 44.2 10.3 75 198-274 157-257 (547)
453 TIGR03118 PEPCTERM_chp_1 conse 89.3 19 0.00042 33.8 20.8 186 200-400 101-307 (336)
454 TIGR03606 non_repeat_PQQ dehyd 89.3 14 0.00031 37.1 14.7 61 342-402 24-90 (454)
455 TIGR02276 beta_rpt_yvtn 40-res 89.2 2.2 4.7E-05 26.6 6.1 31 244-274 1-31 (42)
456 PF14761 HPS3_N: Hermansky-Pud 88.9 16 0.00036 32.4 14.4 102 318-422 29-165 (215)
457 PF03022 MRJP: Major royal jel 88.8 21 0.00046 33.7 21.9 183 210-408 35-253 (287)
458 KOG4460 Nuclear pore complex, 88.6 7.7 0.00017 38.9 11.8 69 310-378 108-199 (741)
459 PF14761 HPS3_N: Hermansky-Pud 88.4 18 0.00038 32.2 14.1 94 359-454 29-156 (215)
460 TIGR03074 PQQ_membr_DH membran 88.3 42 0.00091 36.5 22.6 128 250-383 197-349 (764)
461 KOG4659 Uncharacterized conser 88.3 50 0.0011 37.3 18.6 27 431-457 660-686 (1899)
462 PRK13684 Ycf48-like protein; P 88.2 26 0.00056 33.9 29.3 145 310-463 177-329 (334)
463 PF10446 DUF2457: Protein of u 88.2 0.34 7.4E-06 47.0 2.4 7 201-207 194-200 (458)
464 TIGR03548 mutarot_permut cycli 87.9 26 0.00056 33.6 22.6 62 316-378 123-195 (323)
465 KOG1916 Nuclear protein, conta 87.5 0.41 8.9E-06 50.5 2.7 91 327-419 153-264 (1283)
466 TIGR03548 mutarot_permut cycli 87.4 28 0.00061 33.4 17.8 25 314-338 169-197 (323)
467 PF13449 Phytase-like: Esteras 86.7 31 0.00068 33.2 21.8 146 310-456 89-311 (326)
468 PF07676 PD40: WD40-like Beta 86.6 2.5 5.5E-05 25.9 5.1 32 386-417 4-38 (39)
469 PLN00033 photosystem II stabil 86.6 36 0.00078 33.8 18.3 102 310-417 285-396 (398)
470 TIGR02171 Fb_sc_TIGR02171 Fibr 86.1 5.7 0.00012 42.8 10.1 87 318-404 320-412 (912)
471 PRK13615 lipoprotein LpqB; Pro 85.7 33 0.00072 35.6 15.3 137 310-450 338-487 (557)
472 PF11715 Nup160: Nucleoporin N 85.1 5.5 0.00012 41.5 9.7 37 392-428 216-256 (547)
473 COG5276 Uncharacterized conser 84.8 34 0.00074 32.0 23.9 192 191-422 88-287 (370)
474 COG4257 Vgb Streptogramin lyas 84.5 34 0.00074 31.7 13.5 149 309-459 65-215 (353)
475 PF10214 Rrn6: RNA polymerase 84.0 71 0.0015 34.9 22.1 206 214-451 1-267 (765)
476 KOG2280 Vacuolar assembly/sort 83.8 63 0.0014 34.3 16.8 39 348-387 217-255 (829)
477 PF04931 DNA_pol_phi: DNA poly 83.7 0.77 1.7E-05 50.0 2.7 10 126-135 767-776 (784)
478 PF03088 Str_synth: Strictosid 83.7 11 0.00023 28.5 8.0 43 408-451 33-75 (89)
479 KOG1900 Nuclear pore complex, 83.7 28 0.0006 39.1 14.0 68 310-378 183-273 (1311)
480 PF05935 Arylsulfotrans: Aryls 83.5 56 0.0012 33.4 19.3 114 311-430 153-311 (477)
481 TIGR03547 muta_rot_YjhT mutatr 83.3 46 0.00099 32.2 19.4 29 194-222 59-98 (346)
482 COG5290 IkappaB kinase complex 83.3 47 0.001 35.4 14.7 130 310-443 206-347 (1243)
483 COG1506 DAP2 Dipeptidyl aminop 83.2 63 0.0014 34.3 16.7 139 310-454 64-237 (620)
484 KOG1898 Splicing factor 3b, su 83.0 81 0.0018 34.9 17.9 85 190-274 540-627 (1205)
485 PF07676 PD40: WD40-like Beta 82.6 5.4 0.00012 24.4 5.3 32 343-374 4-38 (39)
486 PF14269 Arylsulfotran_2: Aryl 82.6 45 0.00098 31.7 14.1 71 307-377 145-220 (299)
487 PRK13614 lipoprotein LpqB; Pro 82.5 54 0.0012 34.2 15.2 138 310-451 347-504 (573)
488 PF12768 Rax2: Cortical protei 82.4 26 0.00055 32.9 11.8 93 326-420 15-123 (281)
489 KOG2280 Vacuolar assembly/sort 82.1 46 0.00099 35.2 14.1 59 386-444 212-271 (829)
490 PLN02193 nitrile-specifier pro 80.2 73 0.0016 32.5 17.9 104 316-424 228-355 (470)
491 PLN00033 photosystem II stabil 79.4 70 0.0015 31.8 29.3 137 310-455 243-392 (398)
492 PRK14131 N-acetylneuraminic ac 77.6 76 0.0016 31.2 19.7 201 193-427 79-375 (376)
493 PRK10115 protease 2; Provision 77.3 1.1E+02 0.0024 33.0 31.9 233 191-462 128-391 (686)
494 KOG2063 Vacuolar assembly/sort 76.9 41 0.00089 36.8 12.6 75 191-269 17-100 (877)
495 COG4590 ABC-type uncharacteriz 76.8 13 0.00028 36.7 8.0 154 195-378 228-387 (733)
496 PF09026 CENP-B_dimeris: Centr 75.8 0.84 1.8E-05 34.1 -0.1 14 67-80 40-53 (101)
497 PF03088 Str_synth: Strictosid 75.8 32 0.00069 26.0 8.5 14 310-323 61-74 (89)
498 PF14727 PHTB1_N: PTHB1 N-term 75.2 94 0.002 31.1 26.0 225 198-456 36-312 (418)
499 COG4590 ABC-type uncharacteriz 74.4 14 0.00031 36.4 7.6 140 307-449 222-374 (733)
500 PRK13613 lipoprotein LpqB; Pro 74.4 1.2E+02 0.0026 32.0 15.7 154 308-463 365-537 (599)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=316.34 Aligned_cols=262 Identities=21% Similarity=0.328 Sum_probs=238.2
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
||+...+ +++.|+||+.+|.++||+...... ..++.+|.+.+.++.| +|. ...-+++|+.||++++|++.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---~~~l~gH~~~v~~~~f--hP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---LQTLRGHTSRVGAAVF--HPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce---eEEEeccccceeeEEE--ccCCCccceeeeccCCceeeeccCCC
Confidence 6666666 999999999999999999987633 4788899999999999 887 3445999999999999999887
Q ss_pred eeeeeee-c---cccEEeccCCceEE------EEEEeecccceEE----EEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 268 QLSKHFR-F---PWPVNVSSSYCIIL------LCRLLNFMTEKVI----ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 268 ~~~~~~~-~---~~~v~~s~~~~~l~------~~~v~d~~~~~~~----~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.++..+. | ...|.|+|+|..|+ ++++||..++..+ .+...|.+++|.|||.++++||-|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 7776665 3 45677999999997 6899999998765 3445888999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEcCCC
Q 011924 334 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPAD 412 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg 412 (475)
+++|+++..|.+|...|.+++|+|+|..||||+.|++++|||+|. .+++.++.+|..-|+.++|+| .|++|++++.|+
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCc
Confidence 999999999999999999999999999999999999999999998 777999999999999999999 789999999999
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+++||...+..++.++.+|.+.|.++..+||+.+|+++++|++++-
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 9999999999999999999999999999999999999999999863
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=286.27 Aligned_cols=322 Identities=18% Similarity=0.232 Sum_probs=259.5
Q ss_pred ccccccccccccceeeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccccccee
Q 011924 114 YYEFRRNSRSVKSTILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 191 (475)
Q Consensus 114 ~~~~~~~~~~~~~~~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (475)
.|+-+.-++-..+...|-...-++ |++....+.. ..|..+++|+..+....... .| +..-
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--Kg----------------H~~W 159 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KG----------------HKNW 159 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee--cC----------------CccE
Confidence 333343344444445565544444 7776666666 56789999998876543332 22 3357
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEE---eCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY---GSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~---~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
|.|++| +|+.|++|+.+|+|++||..+++.. ...+.+|...|++++|. ..|..+ +|+++|.||+|+|||+..
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC
Confidence 999999 9999999999999999998776655 57788999999999993 233455 599999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCC--ceE------EEEEEeecccceEEEEe----eeeeeEEEC-----------CCC-----
Q 011924 267 YQLSKHFR-FPWPVNVSSSY--CII------LLCRLLNFMTEKVIICL----LCLQHSSQS-----------PDG----- 317 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~--~~l------~~~~v~d~~~~~~~~~~----~~i~~~~~s-----------p~g----- 317 (475)
++++..+. |..+|+.-.-| ..+ .++++|+...|+....+ ..|..++.| |.+
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 99988877 77777743222 233 27999999887654332 255555555 333
Q ss_pred --------------------cEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 318 --------------------KLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 318 --------------------~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
..|++|++|.++++|+.. +.+++.++.+|+.-|..+.||||++++|++|.|+.|++||.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 359999999999999976 45688899999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++ ++.+.++.+|.++|..++|+.|.++|++|+.|.++++|++++.+....+.+|..+|.++.|+|||..+++|+.|..+
T Consensus 397 ~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 397 RT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred CC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEE
Confidence 88 89999999999999999999999999999999999999999998888899999999999999999999999999655
Q ss_pred c
Q 011924 457 G 457 (475)
Q Consensus 457 ~ 457 (475)
+
T Consensus 476 ~ 476 (480)
T KOG0271|consen 476 R 476 (480)
T ss_pred E
Confidence 3
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=264.83 Aligned_cols=270 Identities=23% Similarity=0.354 Sum_probs=238.8
Q ss_pred EEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 137 VWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
-|++++..|..+ .++.+++|++.+......+.+. ..-|.+.++ .++++++||.|+...|
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecC------------------ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 389888887775 6799999999887766554432 235777777 8999999999999999
Q ss_pred EeCCCC---CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 214 KHLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 214 w~~~~~---~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++... +.....+.+.+|.+.+.+..| -+++ .++++|.|.+..+||+++++.+..|. |.+.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~--------- 190 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVM--------- 190 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEE--cCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEE---------
Confidence 999754 223345678899999999999 5555 49999999999999999999999998 899999
Q ss_pred EEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
+++++| +++.+++|+-|+..+|||++.+.++++|.+|...|.+++|+|+|.-|+||+.|
T Consensus 191 --------------------slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 191 --------------------SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred --------------------EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCe
Q 011924 369 KTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 446 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~ 446 (475)
+++|+||+|. .+.+..+... ..+|++++||..||+|.+|..|..+.+||.-.++....+.+|..+|+++..+|||-.
T Consensus 251 ~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred ceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 9999999998 6666666643 358999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcce
Q 011924 447 LFIGVWDRTYGS 458 (475)
Q Consensus 447 l~~~~~D~~~~~ 458 (475)
|++|+||.+++.
T Consensus 330 v~TgSWDs~lri 341 (343)
T KOG0286|consen 330 VATGSWDSTLRI 341 (343)
T ss_pred EEecchhHheee
Confidence 999999988764
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.6e-37 Score=296.39 Aligned_cols=301 Identities=23% Similarity=0.368 Sum_probs=257.7
Q ss_pred ccccceeeecccceeE--EecCCCeEEEecCCeEEEEecCCCCce--EEEeccCC-CCCCCCCCCCcc------------
Q 011924 122 RSVKSTILHFQLRNLV--WATSKHDVYLMSHFSVIHWSSLTSSRS--QVLNVSGH-VAPSEKHPGSLL------------ 184 (475)
Q Consensus 122 ~~~~~~~~h~~lr~l~--~~~~~~~v~~~~~~~v~~w~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~------------ 184 (475)
.++++..+|..++-++ |+++.+.||-+++..++|-.+.+.... ..+|.+|. ++..+...|+++
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 4788888898888877 667778899999999999988886653 45677787 888887777765
Q ss_pred ccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 185 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 185 ~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
+..|-..++|+++ +|+++++|+.||+|+|||... .+|..++..|++.|+++.| +..|+. ++++|.||+||.|
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f--~~~g~~-llssSLDGtVRAw 419 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQF--TARGNV-LLSSSLDGTVRAW 419 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEE--EecCCE-EEEeecCCeEEee
Confidence 1112347888888 999999999999999999664 7899999999999999999 888886 8999999999999
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-CcEEEEECCCCceEE
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-PDGLLVDSMTGKTIA 341 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-g~i~iwd~~~~~~~~ 341 (475)
|+..++..++|..|.++.|+ |++..|.|.++.+|+.| -.|++|++++|+.+-
T Consensus 420 DlkRYrNfRTft~P~p~Qfs---------------------------cvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFS---------------------------CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred eecccceeeeecCCCceeee---------------------------EEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 99999999999999999977 99999999999999866 479999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.|.||.++|.+++|+|.+..||++|+|.|||+||+-.....+.++.. ..-+..++|+|+|+.||+++.||.|.+||++.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 99999999999999999999999999999999999775566777764 45688999999999999999999999999987
Q ss_pred CeeEEEEec--------------------cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEID--------------------FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~--------------------~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+..+..+.+ ....++.|++|+||.+|++|+....+
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 766543332 11358899999999999998766554
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-36 Score=270.55 Aligned_cols=264 Identities=18% Similarity=0.226 Sum_probs=231.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+..+|.|++| ++..|++|+.|-++++||+.+..+. .+..+|..-|.+|+| +|+|+. |++|+.||+|++||.+
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvaw--sPDgk~-iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAW--SPDGKK-IASGSKDGSIRLWDPK 187 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEE--CCCcch-hhccccCCeEEEecCC
Confidence 4458999999 8999999999999999999987766 566789999999999 999997 9999999999999998
Q ss_pred CCeeee-eee-ccc--------cEEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeC
Q 011924 266 KYQLSK-HFR-FPW--------PVNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 266 ~~~~~~-~~~-~~~--------~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~ 325 (475)
+++++. .+. |.. |+...|..+.++ .++|||...+..+.++. .|+|+.|-.+| ++++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 876543 333 332 333445556554 79999999988876655 78999998665 8999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEe-----------cCCCE-------------------------EEEEeCCC
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWH-----------PNGVT-------------------------FATGNQDK 369 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s-----------p~g~~-------------------------l~t~s~dg 369 (475)
|++|++|+...|++.+.|+||..+|+.++.+ |.++. |++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999988776 43444 99999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
++.+|+-....+++..+.+|..-|..+.||||++++|+|+.|..|++||.++|+.+..+.+|-+.|..++||.|.+.|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 99999998878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcce
Q 011924 450 GVWDRTYGS 458 (475)
Q Consensus 450 ~~~D~~~~~ 458 (475)
|+.|.+++.
T Consensus 427 ~SkDsTLKv 435 (480)
T KOG0271|consen 427 GSKDSTLKV 435 (480)
T ss_pred cCCCceEEE
Confidence 999988863
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-35 Score=288.96 Aligned_cols=235 Identities=23% Similarity=0.368 Sum_probs=216.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCC----------------------------ceEEEeeecCCCCceeEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------VSFCSRTTYDDNAITNAVEI 240 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----------------------------~~~~~~~~~~~~~~v~~l~~ 240 (475)
.++|..| ++.+||.|-.|-.|++|.+...+ .....+...+|.++|....|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 5777777 77888888899999999987311 11123557899999999999
Q ss_pred EeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE
Q 011924 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL 319 (475)
Q Consensus 241 ~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~ 319 (475)
+|+.++ |+++|.|++||+|.+.+..++-.+. |..||. .+.|+|-|-+
T Consensus 460 --sPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVw-----------------------------dV~F~P~GyY 507 (707)
T KOG0263|consen 460 --SPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW-----------------------------DVQFAPRGYY 507 (707)
T ss_pred --cccccc-eeeccCCcceeeeecccceeEEEecCCCccee-----------------------------eEEecCCceE
Confidence 999986 9999999999999999999888887 888999 9999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 320 l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
+|+++.|++.++|.....++++.+.||.+.|.|++|||+++|+||||.|.+||+||+.+ +..++.+.||.++|.+++||
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999977 88899999999999999999
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
|+|++||+|+.|+.|+|||+.++..+.++.+|.+.|.++.||.+|..|++|+.|.++.-
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999988853
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=241.77 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=223.3
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
|..|++|...+|.....+.. ..++|..|.. +++.|++|+. -.|++||+++.... ....
T Consensus 19 DhTIRfWqa~tG~C~rTiqh------------------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t 78 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQH------------------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVAT 78 (311)
T ss_pred cceeeeeehhcCeEEEEEec------------------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeE
Confidence 57899999999988776543 2357888888 7788888875 57999999987764 3567
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeee
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLC 307 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~ 307 (475)
+.+|...|.++.| ..+|++ +++||.||+++|||++...+.+.+.++.+|+
T Consensus 79 ~e~h~kNVtaVgF--~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn--------------------------- 128 (311)
T KOG0315|consen 79 FEGHTKNVTAVGF--QCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN--------------------------- 128 (311)
T ss_pred EeccCCceEEEEE--eecCeE-EEecCCCceEEEEeccCcccchhccCCCCcc---------------------------
Confidence 7889999999999 899998 9999999999999999988889999999999
Q ss_pred eeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-----Cc
Q 011924 308 LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-----SE 381 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-----~~ 381 (475)
++..+|+-..|+++..+|.|++||+....+...+-. ....|.++...|+|.+++.+...|++.+|++-+. -.
T Consensus 129 --~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 129 --TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred --eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 999999999999999999999999998877666543 4468999999999999999999999999998642 24
Q ss_pred eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 382 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++..++.|.+.+..+.+|||+++||+++.|.+++||++.+. +...++.+|.+.+.+++||.||+||++|+.|...+
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence 78889999999999999999999999999999999999887 45567778999999999999999999999996553
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=239.96 Aligned_cols=266 Identities=18% Similarity=0.298 Sum_probs=225.2
Q ss_pred ccceeeec--ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC
Q 011924 124 VKSTILHF--QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 199 (475)
Q Consensus 124 ~~~~~~h~--~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~ 199 (475)
-..++.|- |...|-..+++..|..+....|++|+..+++...++.+.+| ...|+++.| +|
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dg 95 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDG 95 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecC
Confidence 33445554 44556677888888889999999999988887777776653 236888888 99
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPW 277 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~ 277 (475)
+.+++||.||+++|||++... .+....+.++|++|.+ +|+... |++|..+|.|++||+....+...+- ...
T Consensus 96 rWMyTgseDgt~kIWdlR~~~----~qR~~~~~spVn~vvl--hpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 96 RWMYTGSEDGTVKIWDLRSLS----CQRNYQHNSPVNTVVL--HPNQTE-LISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eEEEecCCCceEEEEeccCcc----cchhccCCCCcceEEe--cCCcce-EEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999998732 2445567799999999 999876 9999999999999998776655544 344
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC------ceEEEeecCCCCeE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG------KTIASLCGHLDFSF 351 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------~~~~~l~~h~~~v~ 351 (475)
++. ++++.|+|++|+.+...|.+++|++-+. .++..++.|.+.+.
T Consensus 169 ~i~-----------------------------sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 169 SIQ-----------------------------SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred cee-----------------------------eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 566 9999999999999999999999998754 35677889999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.+.+||++++||++|.|.+|+||+....-+.-..+++|...++.++||.||+||++|+.|+.+++|++..++.+++..+|
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 99999999999999999999999998755677788999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEc
Q 011924 432 FGEISGISFS 441 (475)
Q Consensus 432 ~~~i~~l~fs 441 (475)
.....+++..
T Consensus 300 ~K~~vc~~ln 309 (311)
T KOG0315|consen 300 HKAAVCVALN 309 (311)
T ss_pred ccccEEEEee
Confidence 8877777653
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=262.64 Aligned_cols=329 Identities=18% Similarity=0.256 Sum_probs=255.6
Q ss_pred CHHHHHHHHHhcccCccCCCCCCCCcCcccccccccccccccccccccccceeeecc-------cceeEEecCCCeEEEe
Q 011924 76 TREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQ-------LRNLVWATSKHDVYLM 148 (475)
Q Consensus 76 ~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------lr~l~~~~~~~~v~~~ 148 (475)
.--.|++.|.-+|.--..++.........|.+ +..|+ ......+...+.|.. ...+.|.+.+..|.+.
T Consensus 40 ~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~p---p~~~~--~dp~~~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltg 114 (464)
T KOG0284|consen 40 PVCNYRQNRRWQYDRDRALLQPDSSYIIDLVP---PSLYL--DDPSSAFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTG 114 (464)
T ss_pred HHHHHHHHHhhcccccccccCCCchhhhcccC---hhhcc--CCcccccccceEeccccccccceeeEEEcCCCceeEee
Confidence 45678888888887222222221112222211 11122 222334444445543 2234488888888875
Q ss_pred c-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 149 S-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
+ .+.+.+|+..+ +++. .+...+..+|.+|.| ++.++++|..+|.|++|+..-+...
T Consensus 115 s~SGEFtLWNg~~------fnFE------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk--- 173 (464)
T KOG0284|consen 115 SQSGEFTLWNGTS------FNFE------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK--- 173 (464)
T ss_pred cccccEEEecCce------eeHH------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---
Confidence 4 47889998643 2221 122335678999999 9999999999999999998765544
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
....+|...|.+++| +|+... |+++|.||+|+|||....+.-+.+. |.+.|.
T Consensus 174 ~~~ahh~eaIRdlaf--SpnDsk-F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk------------------------ 226 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAF--SPNDSK-FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK------------------------ 226 (464)
T ss_pred HhhHhhhhhhheecc--CCCCce-eEEecCCCeEEEEeccCCchhheeccCCCCcc------------------------
Confidence 344456689999999 998886 9999999999999998877766666 889999
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 384 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~ 384 (475)
+++|+|...++++++.|..|++||.++|.++.++.+|+..|.++.|+|++++|+|+|.|..++++|+|. -+.+.
T Consensus 227 -----svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~ 300 (464)
T KOG0284|consen 227 -----SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELF 300 (464)
T ss_pred -----eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 67788
Q ss_pred EEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 385 VLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 385 ~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
++++|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+ ..|.+.|++++|+|=|..|++|+.|.+++-+-+-
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999999999 5568999999999999998854444443 3588999999999999999999999988654443
Q ss_pred E
Q 011924 463 G 463 (475)
Q Consensus 463 ~ 463 (475)
.
T Consensus 381 r 381 (464)
T KOG0284|consen 381 R 381 (464)
T ss_pred C
Confidence 3
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-32 Score=253.94 Aligned_cols=261 Identities=17% Similarity=0.249 Sum_probs=221.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
....|++|+| +|.+||+|.++|.+++|+.+... ..++..|.++|.+|.| +..|.+ +++++-|+++.+||..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKW--nk~G~y-ilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKW--NKKGTY-ILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEE--cCCCCE-EEeccCCccEEEEecc
Confidence 4458999999 69999999999999999976422 3577889999999999 999997 9999999999999999
Q ss_pred CCeeeeeee-cccc---EEeccCCceE-----EEEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 266 KYQLSKHFR-FPWP---VNVSSSYCII-----LLCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 266 ~~~~~~~~~-~~~~---v~~s~~~~~l-----~~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
++.....|. +..+ |.+-.+.... +.++|+-+....+..+.. .|.++.|+|.|.+|+++++|++++||
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 999888887 3333 3322221111 135565555444444433 78899999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 333 DSMTGKTIASLCGHLDFSFASAWHPNG---------VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 333 d~~~~~~~~~l~~h~~~v~~~~~sp~g---------~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
....+.....|.+|...|+.+.|+|.| ..+++++.|++|++||+.. +.+++.+..|..+|.+++|+|+|+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc
Confidence 998888999999999999999999954 4789999999999999977 899999999999999999999999
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+||+|+.||.|+||++++++..+.+.+ .+.|..++|+.+|.+|.++..|+.+.
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCce
Confidence 999999999999999999988877765 56699999999999999999998764
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=257.71 Aligned_cols=224 Identities=21% Similarity=0.258 Sum_probs=202.4
Q ss_pred CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-c---cccEEeccC--CceEE------EEEEeecc
Q 011924 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-F---PWPVNVSSS--YCIIL------LCRLLNFM 297 (475)
Q Consensus 230 ~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~---~~~v~~s~~--~~~l~------~~~v~d~~ 297 (475)
+...++..+.| +++++. |++||.+|.+++|...+...+.+|. | ...+.|+|. +..++ ++++|+..
T Consensus 173 gd~rPis~~~f--S~ds~~-laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSF--SRDSKH-LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEe--ecCCCe-EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 45567788888 999985 9999999999999999988888777 4 455668987 33443 68999998
Q ss_pred cceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 298 TEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 298 ~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
+..++..+ ..|..++|+|+|++|++++.|.+-++||+++++.+...+||...|++++|+|||.+++||+.|..-||
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 86665443 37889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC-CCCeEEEEEe
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVW 452 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp-dg~~l~~~~~ 452 (475)
||+|+ ++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++...++.++..|..-|+.+.|+| .|.+|++++.
T Consensus 330 WDlRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 330 WDLRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 99998 899999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred cCCcc
Q 011924 453 DRTYG 457 (475)
Q Consensus 453 D~~~~ 457 (475)
|+++.
T Consensus 409 D~t~k 413 (459)
T KOG0272|consen 409 DNTVK 413 (459)
T ss_pred Cccee
Confidence 99876
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-32 Score=269.06 Aligned_cols=199 Identities=23% Similarity=0.314 Sum_probs=185.9
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
|..+|...+| +.++|++++.|+++++|.+.+. .|.....+|..+|+.+.| +|-|-+ |+++|.|++.++|...
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F--~P~GyY-Fatas~D~tArLWs~d 523 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQF--APRGYY-FATASHDQTARLWSTD 523 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEe--cCCceE-EEecCCCceeeeeecc
Confidence 4458998888 8999999999999999999874 345777899999999999 999865 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
..++.+.|. |-..|. |++|+|+..++++|+.|.++++||+.+|..++.|.
T Consensus 524 ~~~PlRifaghlsDV~-----------------------------cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVD-----------------------------CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred cCCchhhhcccccccc-----------------------------eEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 988888887 888888 99999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
||.++|.+++|+|+|++|++|+.|+.|.|||+.+ ++++..+.+|.+.|.++.||.+|.+||+|+.|++|++||+...
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999987 8899999999999999999999999999999999999998653
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-31 Score=233.47 Aligned_cols=227 Identities=18% Similarity=0.297 Sum_probs=198.9
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
..|+.++. ..+.|++++.|..+.+|++......+ ..+.+.+|...|+.+.. +++|++ ++++|.|+++|+||+
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--s~dg~~-alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--SSDGNF-ALSASWDGTLRLWDL 92 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--ccCCce-EEeccccceEEEEEe
Confidence 36777777 57899999999999999997654322 34667789999999999 999996 999999999999999
Q ss_pred CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.+++..+.|. |...|. +++|+|+.+.+++|+.|.+|.+|++..+ +..++
T Consensus 93 ~~g~~t~~f~GH~~dVl-----------------------------sva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~ 142 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVL-----------------------------SVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTI 142 (315)
T ss_pred cCCcEEEEEEecCCceE-----------------------------EEEecCCCceeecCCCcceeeeeeeccc-EEEEE
Confidence 9998888887 888999 9999999999999999999999998644 44444
Q ss_pred ec--CCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 344 CG--HLDFSFASAWHPN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 344 ~~--h~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.. +.+.|.|++|+|+ ..+|++++.|++|++||+++ .+....+.+|.+.++.+++||||..+++|+.||.+.+||+
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 43 3789999999996 78999999999999999987 7888899999999999999999999999999999999999
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
..++.+. ...+...|.+++|+|+...|+.+.
T Consensus 222 ~~~k~ly-sl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 222 NEGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cCCceeE-eccCCCeEeeEEecCCceeEeecc
Confidence 9998854 456889999999999977776653
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-31 Score=229.46 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=193.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.+.|..+.. +|++.++++.||.+++||+..... .+.+.+|...|.+++| ++++.. +++||.|.+|++|++..
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---t~~f~GH~~dVlsva~--s~dn~q-ivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---TRRFVGHTKDVLSVAF--STDNRQ-IVSGSRDKTIKLWNTLG 136 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcE---EEEEEecCCceEEEEe--cCCCce-eecCCCcceeeeeeecc
Confidence 346776666 999999999999999999987643 3778899999999999 999986 99999999999999865
Q ss_pred Ceeeeeeec--cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLSKHFRF--PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~~~~~~--~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
......... ..=|+ |+.|+|+ ..++++++.|+++++||+++-+..+.
T Consensus 137 ~ck~t~~~~~~~~WVs-----------------------------cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVS-----------------------------CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred cEEEEEecCCCcCcEE-----------------------------EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 433332222 34566 9999997 78999999999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+.||++.++.+++||||.++++|+.||.+.+||++. ++.+..+. +...|.+++|+|+.-+|+.+... .|+|||+.++
T Consensus 188 ~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred cccccccEEEEEECCCCCEEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence 999999999999999999999999999999999987 67676665 56789999999998777766654 5999999998
Q ss_pred eeEEEEecc---------CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEIDF---------FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~~---------~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..+..- .-...+++||+||..|++|-.|+.++
T Consensus 265 ~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 265 AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 776655421 11346789999999999999998774
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.4e-31 Score=230.75 Aligned_cols=231 Identities=19% Similarity=0.288 Sum_probs=200.8
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|++|.| +.++|++++.||.+.|||..+.... ..+.-...-|-..+| +|+|+. +++|+.|....||++.+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---haipl~s~WVMtCA~--sPSg~~-VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAY--SPSGNF-VACGGLDNKCSIYPLSTR 129 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccce---eEEecCceeEEEEEE--CCCCCe-EEecCcCceeEEEecccc
Confidence 37999999 9999999999999999998766544 223334556667777 999996 999999999999999754
Q ss_pred ------eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 268 ------QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 268 ------~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+..+.+. |.+.+. |..|-+ ...|++++.|.++.+||+++|+.+
T Consensus 130 d~~g~~~v~r~l~gHtgylS-----------------------------cC~f~d-D~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLS-----------------------------CCRFLD-DNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred cccccceeeeeecCccceeE-----------------------------EEEEcC-CCceEecCCCceEEEEEcccceEE
Confidence 2344455 777777 888887 557889999999999999999999
Q ss_pred EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 341 ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.||.+.|.+++++| +++.+++|+-|++.+|||+|. +.+++.+.+|.+-|.+++|.|+|.-+++|+.|++.++||+
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 99999999999999999 999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 420 KSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 420 ~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....+..+.. ...+|++++||..|++|++|..|.+..
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN 298 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCcee
Confidence 99888877764 236899999999999999986666543
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.6e-31 Score=230.66 Aligned_cols=264 Identities=16% Similarity=0.218 Sum_probs=227.8
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|.++.| +|.+|++||.|..|.+|++......+ -...+|++.|..+.| .++++. +++++.|.+|+.||++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~--~~d~s~-i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHG--MRDGSH-ILSCGTDKTVRGWDAE 120 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccccce--eeeccccceeEeeee--ccCCCE-EEEecCCceEEEEecc
Confidence 4558999999 89999999999999999976544332 345589999999999 999986 9999999999999999
Q ss_pred CCeeeeeee-ccccEEecc---CCceE-------EEEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSS---SYCII-------LLCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~---~~~~l-------~~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
+++.++.++ |...|+..+ -|..+ .++++||+.+...+++.. .++++.|..++..+.+|+-|+.|++
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence 999998887 555555222 12222 379999999888877763 6779999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---CceEEEEecCCC----ceEEEEEccCCCE
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---SESVAVLKGNLG----AIRSIRYTSDGRY 404 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~---~~~~~~~~~~~~----~v~~l~~spdg~~ 404 (475)
||++.+..+..+.||.++|+.+..+|+|.++.+-+.|.++++||+|-. .+++..+.+|.. ....++|+|++++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 999999999999999999999999999999999999999999999842 345777777542 3457899999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.+|+.|..+++||..+...+..+.+|.+.|.++.|+|....|.+++.|.++
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 9999999999999998878888999999999999999999999999999875
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=239.57 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=234.0
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
+-+....++.+ .+.+++.|+..++.... .+.|| .. .|.++++ .|++||+++.|=.+.+|
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~--~LrGH---------------t~-sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELER--SLRGH---------------TD-SVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhh--hhhcc---------------cc-ceeEEEEecCccEEEecCCccchhhe
Confidence 44444444444 47999999999887622 22222 22 3788888 78999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
++... ..|.+...+|.-.|.++.| -|.|.. +++++.|.+|+.|++.++-++.+|. ++.=|.
T Consensus 178 d~~~~--~~c~ks~~gh~h~vS~V~f--~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~h~ewvr------------- 239 (406)
T KOG0295|consen 178 DFDTF--FRCIKSLIGHEHGVSSVFF--LPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR------------- 239 (406)
T ss_pred eHHHH--HHHHHHhcCcccceeeEEE--EecCCe-eeecccccceeEEecccceeEEeccCchHhEE-------------
Confidence 98754 3345677788889999999 788876 9999999999999999999999998 666677
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC----------C----
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN----------G---- 359 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~----------g---- 359 (475)
.++.+.||.++|+++.|.++++|-+.++++...+..|+-+|-+++|-|. |
T Consensus 240 ----------------~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 240 ----------------MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred ----------------EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 8899999999999999999999999999999999999999999999773 2
Q ss_pred -CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 360 -VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 360 -~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.++.++++|++|++||+.. +.++.++.+|...|+.++|+|.|+||+++..|+++++||++++.+...+..|..-++++
T Consensus 304 ~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred ccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 5899999999999999976 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
.|+.+..++++|+-|.+++.+
T Consensus 383 Dfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ecCCCCceEEeccccceeeee
Confidence 999999999999999887654
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-33 Score=251.78 Aligned_cols=232 Identities=15% Similarity=0.224 Sum_probs=207.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|..+.| +|+.|++|+..|.+.+|+...-... .+...|.++|.++.| +++|.+ +++|..+|.|++|+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---tilQaHDs~Vr~m~w--s~~g~w-miSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---TILQAHDSPVRTMKW--SHNGTW-MISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHH---HHhhhhcccceeEEE--ccCCCE-EEEcCCCceEEecccchh
Confidence 47888888 8999999999999999987432222 345789999999999 999997 999999999999998654
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
....... +...|+ +++|||+...|+++++||.|+|||....+....|.||
T Consensus 171 nVk~~~ahh~eaIR-----------------------------dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIR-----------------------------DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred hhHHhhHhhhhhhh-----------------------------eeccCCCCceeEEecCCCeEEEEeccCCchhheeccC
Confidence 4433333 458888 9999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
.-.|.+++|||...++|+|+.|..|++||.++ ++++.++.+|...|..+.|+|++++|++++.|..+++||+++.+.+.
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 99999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEEcCCC-CeEEEEEecCCcc
Q 011924 427 QEIDFFGEISGISFSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 427 ~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~ 457 (475)
.+.+|...+.++.|+|-. ..|.+|++|+.+.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999955 4566789998764
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-31 Score=256.43 Aligned_cols=235 Identities=20% Similarity=0.286 Sum_probs=211.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|.+++. +|.+|++|+.|.++++|.++++. ...|.....+|...|.+|++ +..+..+|+++|.|+++++|++..
T Consensus 366 e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCC
Confidence 36788884 67799999999999999994433 44455667889999999999 888888899999999999999976
Q ss_pred Ceeee---e-------eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 267 YQLSK---H-------FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 267 ~~~~~---~-------~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
.+... . ..|...|+ |++++|+.+++|+|+.|.+.+||++..
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN-----------------------------~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDIN-----------------------------CVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred cccccccceehhhHHHHhhccccc-----------------------------ceEecCCCceEEecccccceeeecccC
Confidence 22111 1 11667777 999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
.....+|.||...|+|+.|+|..+.+||+|.|+||+||.+.+ .++++++.+|..+|..+.|-.+|+.|++++.||-|+|
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999999999999999999999999999977 8999999999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|+++++.+...+-.|...|++++-+|.+..+++|+.|+.+
T Consensus 574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEE
Confidence 9999999999999999999999999999999999999765
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=233.47 Aligned_cols=247 Identities=18% Similarity=0.246 Sum_probs=220.9
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..-|.|+++ .+.++++|+.|++|+|||+.++... .++.+|-..|..+++ |+--.+ +++++.|+.|+.||++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vav--S~rHpY-lFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAV--SKRHPY-LFSAGEDKQVKCWDLEY 224 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---Eeecchhheeeeeee--cccCce-EEEecCCCeeEEEechh
Confidence 357889998 6789999999999999999976655 566789999999999 888776 88999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
.+.++++. |-..|. |++..|.-..|++|+.|..++|||+++...+..+.|
T Consensus 225 nkvIR~YhGHlS~V~-----------------------------~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVY-----------------------------CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred hhhHHHhccccceeE-----------------------------EEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 99999887 788888 999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|..+|.++.+.|-...+++||.|++|++||++. ++...++..|...|++++.+|....+|+++.|+ |+-|++..|..+
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~ 353 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL 353 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence 999999999999777899999999999999998 888899999999999999999999999999886 999999999988
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecceeeeccc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSL 474 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~~l~~~ 474 (475)
..+.+|.+-|..++...|| ++++|+..|.+ .+..+..+++++.+..+
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~-~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSI-MFWDWKSGHNYQRGQTI 400 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEE-EEEecCcCccccccccc
Confidence 8889999999999998886 66677655444 66777788888877544
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=9.1e-32 Score=250.25 Aligned_cols=233 Identities=19% Similarity=0.283 Sum_probs=205.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.|+++.| .+.+|++||.|+.|+||++...+ .|.+++.+|..+|..+.| ++.|.. |+++|.|+.|++||+++|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~--s~~g~~-fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASF--NNCGTS-FLSASFDRFLKLWDTETG 290 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhc--cccCCe-eeeeecceeeeeeccccc
Confidence 5777777 78999999999999999998744 346899999999999999 999987 999999999999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+++..|.....+. |+.|.|++ +.+++|+.|+.|+.||+++++.++.+..|
T Consensus 291 ~~~~~f~~~~~~~-----------------------------cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 291 QVLSRFHLDKVPT-----------------------------CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred eEEEEEecCCCce-----------------------------eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 9999999888888 99999988 89999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-------------------------------eE------------
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-------------------------------SV------------ 383 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-------------------------------~~------------ 383 (475)
.+.|..+.|-|+|+++++++.|++++||+.+.+-. .+
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 99999999999999999999999999999765210 00
Q ss_pred --EEEecCC--CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-CCeEEEEEecCCcc
Q 011924 384 --AVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-TESLFIGVWDRTYG 457 (475)
Q Consensus 384 --~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-g~~l~~~~~D~~~~ 457 (475)
+.+.+|. +--..+.|||||++|++|..+|.+.+||.++.+.+..+..|.+.+.++.|+|- ...+|+++|||.+.
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 1112332 33467899999999999999999999999999999999999999999999995 46788999999875
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6e-29 Score=224.06 Aligned_cols=280 Identities=17% Similarity=0.161 Sum_probs=227.3
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
..-.+|...++.. +..+.| +.-.|+++.| +|.+|++|+.+|.|.||...+..... .+.
T Consensus 86 D~AflW~~~~ge~--~~eltg----------------HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~ 145 (399)
T KOG0296|consen 86 DLAFLWDISTGEF--AGELTG----------------HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD 145 (399)
T ss_pred ceEEEEEccCCcc--eeEecC----------------CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee
Confidence 5567898877762 222332 3346888888 99999999999999999998776553 222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEE---eccCCceEE------EEEEeeccc
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVN---VSSSYCIIL------LCRLLNFMT 298 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~---~s~~~~~l~------~~~v~d~~~ 298 (475)
..-..+.-+.| +|.+.. |++|+.||.+.+|.+..+...+.+. |..+++ |.|+|+.+. ++++||+++
T Consensus 146 -~e~~dieWl~W--Hp~a~i-llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 146 -QEVEDIEWLKW--HPRAHI-LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred -cccCceEEEEe--cccccE-EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 33344556777 898875 9999999999999998876666666 666666 889998884 789999999
Q ss_pred ceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEEec---CCCEE
Q 011924 299 EKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--------GHLDFSFASAWHP---NGVTF 362 (475)
Q Consensus 299 ~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--------~h~~~v~~~~~sp---~g~~l 362 (475)
++++.... ...++.++..+..++.|+.++.+++....+|+.+.... .+...+.|+.+.| .-.++
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 98887666 56789999999999999999999999998998877666 3444555555555 56789
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
|+|+-||+|.|||+.. . .++..-.|..+|+.+.|-+ ..+|++++.+|.|+.||.++|.++..+.+|..+|.+++++|
T Consensus 302 A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred hcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC
Confidence 9999999999999975 3 4455556788899999998 77999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+++++++++.|++..
T Consensus 379 ~~~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTAL 393 (399)
T ss_pred CCcEEEEecCCCeEE
Confidence 999999999997653
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.6e-28 Score=228.58 Aligned_cols=270 Identities=21% Similarity=0.319 Sum_probs=225.6
Q ss_pred ceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.|.+....+++.. ++.+.+|+..+++....+. .+...+..+.+ ++++|++++.+|.
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK------------------GHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe------------------cCCcceeEEEECCCCCEEEEEcCCCe
Confidence 4455666666666655 7899999987665322211 12234667777 6679999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++|++...... .....|...+.++.| ++++. ++++++.++.|++|++.+++....+. +...+.
T Consensus 75 i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~--------- 139 (289)
T cd00200 75 IRLWDLETGECV---RTLTGHTSYVSSVAF--SPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN--------- 139 (289)
T ss_pred EEEEEcCcccce---EEEeccCCcEEEEEE--cCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEE---------
Confidence 999999865433 334467778999999 88866 47777779999999999888877776 667788
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
+++|+|++.++++++.++.+++||+++++.+..+..|...+.+++|+|+++.+++++.++
T Consensus 140 --------------------~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 140 --------------------SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred --------------------EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 999999999998888899999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
.|++||++. .+.+..+..+...+.+++|+|++.++++++.++.|++|++.++.....+..|...|.+++|+|++++|++
T Consensus 200 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 200 TIKLWDLST-GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred cEEEEECCC-CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999976 6778888788889999999999999999888999999999998888888888899999999999999999
Q ss_pred EEecCCcc
Q 011924 450 GVWDRTYG 457 (475)
Q Consensus 450 ~~~D~~~~ 457 (475)
++.|+.+.
T Consensus 279 ~~~d~~i~ 286 (289)
T cd00200 279 GSADGTIR 286 (289)
T ss_pred ecCCCeEE
Confidence 99998653
No 24
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-30 Score=219.52 Aligned_cols=233 Identities=19% Similarity=0.228 Sum_probs=201.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+..++| ..+.+++++.||.+++||+..+... +..+.+|...|.++.| ++..+..++++|.|++|++|+....
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kEH~~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKEHKREVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHhhhhheEEecc--ccccceeEEeeccCCceEeecCCCC
Confidence 5778888 5678899999999999997654443 5778899999999999 8887778999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
+.+.+|. +...|. ..+|+| .++++++++.|+.+++||++.......+..
T Consensus 138 ~Sv~Tf~gh~~~Iy-----------------------------~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a 188 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIY-----------------------------QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA 188 (311)
T ss_pred cceEeecCCccEEE-----------------------------EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence 9999988 666666 899999 889999999999999999985444445889
Q ss_pred CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCe
Q 011924 346 HLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 346 h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~ 423 (475)
|...+.|+.|+. +.+.++||+.|+.||+||+|+...++..+.+|.-+|+.++|||.. ..||+++.|-+++|||...+.
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999999998 889999999999999999999999999999999999999999965 689999999999999987443
Q ss_pred -eEEEEeccCCCeEEEEEcC-CCCeEEEEEecCCc
Q 011924 424 -EKEQEIDFFGEISGISFSP-DTESLFIGVWDRTY 456 (475)
Q Consensus 424 -~~~~~~~~~~~i~~l~fsp-dg~~l~~~~~D~~~ 456 (475)
.+.+...|..-+.++.||+ ++.++|+++||..+
T Consensus 269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred hhhhhhhccceEEeccccccccCceeeecccccce
Confidence 4444555667789999998 67899999999765
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.1e-29 Score=249.55 Aligned_cols=235 Identities=22% Similarity=0.314 Sum_probs=206.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-C
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-G 265 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~ 265 (475)
...|+++.| +|+.|++++.++.+++|+...... .......+|...|+.++| +|+++. +++++.|++|++||+ .
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~f--s~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAF--SPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEE--CCCCcE-EEEecCCceEEEeeccC
Confidence 346778887 999999999999999999955441 122444789999999999 999995 999999999999999 5
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.+..++.+. |...|. +++|+|+|+++++|+.|++|+|||+++++++..+.
T Consensus 235 ~~~~~~~l~gH~~~v~-----------------------------~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVT-----------------------------SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred CCeEEEEecCCCCceE-----------------------------EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence 568888887 889999 99999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCc--eEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~--v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+|.+.|.+++|++++++|++++.|+.|+|||+.+ +. ++..+..+..+ +++++|+|+|++|+++..|+.+++||+.
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999999999999999999999987 55 46677766554 9999999999999999999999999999
Q ss_pred CCeeEEEEeccCCC---eEEEEEcCCCCeEEEEEecCCcc
Q 011924 421 SGYEKEQEIDFFGE---ISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 421 ~~~~~~~~~~~~~~---i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+..+..+..|... +.+..+++.+.++++|+.|+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 99999999988764 44556688999999999997763
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.5e-27 Score=230.07 Aligned_cols=322 Identities=15% Similarity=0.196 Sum_probs=250.9
Q ss_pred cccceeeeccc-ceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c
Q 011924 123 SVKSTILHFQL-RNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K 198 (475)
Q Consensus 123 ~~~~~~~h~~l-r~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~ 198 (475)
..+....||+- ..+-|+.+...+.. .-|-.+++|.....+......+.|| ...|.+.-| +
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH----------------kd~VvacfF~~~ 200 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH----------------KDYVVACFFGAN 200 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCC----------------CcceEEEEeccC
Confidence 44556677765 44448877777666 4567788888665544333333332 224444444 7
Q ss_pred CcEEEEEecCceEEEEeCCCC------------------------C---c-eEE---EeeecCCCCceeEEEEEeCCCCC
Q 011924 199 DKLLVAGGFQGELICKHLDRP------------------------G---V-SFC---SRTTYDDNAITNAVEIYGSPSGA 247 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~------------------------~---~-~~~---~~~~~~~~~~v~~l~~~~s~~g~ 247 (475)
...|++-+.||.+.+|..+.. + . .+. ...+......|++.++ ++.-+
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--H~~t~ 278 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--HKGTN 278 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec--cCCce
Confidence 788999999999999987611 1 0 000 0112223366788877 77655
Q ss_pred eEEEEEeCCCeEEEEECCCCeeeeeee-c---cccEEeccCCceEE-------EEEEeecccceEEEE----eeeeeeEE
Q 011924 248 VHFTASNNDCGVRDFDMGKYQLSKHFR-F---PWPVNVSSSYCIIL-------LCRLLNFMTEKVIIC----LLCLQHSS 312 (475)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~-~---~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~----~~~i~~~~ 312 (475)
+|++|-..|...+|.+....+++.+. . ...+.|+..|..++ -+-||+..+..-+-. ...+.+++
T Consensus 279 -~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 279 -LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred -EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 59999999999999999999988776 2 23344666666664 578999888765533 34788999
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-C
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-G 391 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~ 391 (475)
+||||.++|+|+.||.|+|||.++|-+..++..|+..|+.+.|+..|+.++++|-||+||.||+.. .+..+++.... -
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~ 436 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPI 436 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999976 77788887643 3
Q ss_pred ceEEEEEccCCCEEEEEcCCC-eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 392 AIRSIRYTSDGRYMATAEPAD-FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
...+++..|.|..+++|+.|. .|.||++++|+.+-.+.+|.|+|.+++|+|+|..|++|+||.+++.+--|.+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 566899999999999998886 5999999999999999999999999999999999999999999986666654
No 27
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.9e-29 Score=242.28 Aligned_cols=274 Identities=19% Similarity=0.181 Sum_probs=234.6
Q ss_pred ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 132 QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
..|.+.++.+...++...++++++|+..+.+....+.. ..+.+..| .++++++|...|
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--------------------~y~l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--------------------GYILASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--------------------ccEEEEEecCCCceEEEeccCC
Confidence 35677777777767777789999999887776554321 24566666 788999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-----Cee--------eeeeecc
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQL--------SKHFRFP 276 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-----~~~--------~~~~~~~ 276 (475)
.+.++++...... .+...|.+.++.++. +|+++. +++||.|.+|++||..- +.. .+++..+
T Consensus 435 el~vfdlaS~~l~---Eti~AHdgaIWsi~~--~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 435 ELQVFDLASASLV---ETIRAHDGAIWSISL--SPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred ceEEEEeehhhhh---hhhhccccceeeeee--cCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 9999999865544 555689999999999 999997 99999999999998732 111 0222234
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
..+. |+++||||++||++--|.+++||-+.+-+...+|.||.-||.|+..+
T Consensus 509 ddvL-----------------------------~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 509 DDVL-----------------------------CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred ccEE-----------------------------EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 4444 99999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
||+++++|||.|++|+||-+.- +.|.+.+-+|..+|.++.|-|...++.+++.|+.|+-||-.+-..+..+.+|..+|+
T Consensus 560 ~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW 638 (888)
T ss_pred CCcCeEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee
Confidence 9999999999999999999965 899999999999999999999999999999999999999998889999999999999
Q ss_pred EEEEcCCCCeEEEEEecCCcceEEE
Q 011924 437 GISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+++.+|+|.++++++.|.+++-+-+
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeec
Confidence 9999999999999999998864443
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.4e-29 Score=233.26 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=213.5
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEE------ee-----ecCCCCceeEEEEEeCCCCCeEEEEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCS------RT-----TYDDNAITNAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~------~~-----~~~~~~~v~~l~~~~s~~g~~~l~s~ 253 (475)
+.++|.+-+| ...+|++|+.+-..++|++......... .+ ....+..|++++| +.+|.. |++|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~-LatG 253 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTL-LATG 253 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCe-EEEe
Confidence 4567888888 4568999999999999998741111000 00 1123356999999 999985 9999
Q ss_pred eCCCeEEEEECCCCeeeeeee-ccccEE---eccCCceEE------EEEEeecccceEEEEeeee----eeEEECCCCcE
Q 011924 254 NNDCGVRDFDMGKYQLSKHFR-FPWPVN---VSSSYCIIL------LCRLLNFMTEKVIICLLCL----QHSSQSPDGKL 319 (475)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~---~s~~~~~l~------~~~v~d~~~~~~~~~~~~i----~~~~~sp~g~~ 319 (475)
+.||.+|+|+.. +.++.++. |.+||. +...|..|. ++.+||..++...+..... -.+.|- +...
T Consensus 254 ~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDE 331 (524)
T ss_pred ecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCce
Confidence 999999999985 45555555 666655 556665553 6789999888776654411 134443 3446
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 320 l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
|++++.|+.|+|+.+....++.++.||.+.|.++.|.|.|.+|+++|.|+|++||.+.. ..+.+.+.+|...|..+.|+
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeec
Confidence 88888999999999988889999999999999999999999999999999999999866 77889999999999999999
Q ss_pred cCCC---------EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 400 SDGR---------YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 400 pdg~---------~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|.|. .|++++.|++|++||+..|.++..+..|..+|.+++|||+|++||+|+.|+.+
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 9763 78999999999999999999999999999999999999999999999888765
No 29
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=211.96 Aligned_cols=262 Identities=16% Similarity=0.204 Sum_probs=223.4
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|.+++| +|..|++|++++++.+|+++...... .....+|.+.|-.++| +|...-+|++++.|.+|++||++.+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w--~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCW--DPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhhee--CCCCCcceEEecCCceEEEEEeccC
Confidence 47889999 99999999999999999998764321 2445678888899999 7777667999999999999999999
Q ss_pred eeeeeee---ccccEEeccCCceEE------EEEEeecccceEEEEe---eeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 268 QLSKHFR---FPWPVNVSSSYCIIL------LCRLLNFMTEKVIICL---LCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 268 ~~~~~~~---~~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~---~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
++..... ..-.+.++|++..++ .+...|..+-+..... ..+..++|+-++.+++.....|.|.|....
T Consensus 98 k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 98 KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 9887776 233456889988875 3566666665554332 255678899888888887788999999999
Q ss_pred CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 336 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
.-+++..++.|.....|+.|+|+|++||+|+.|..|.+||+.. --+++.+.-+.-+|+.+.||.||++||+|+.|..|-
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 9999999999999999999999999999999999999999976 568888998999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|=++++|..+..+. +.++...++|+|....||-++.|..-
T Consensus 257 IA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 257 IAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred eEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 99999998887765 78999999999999999999887654
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=244.63 Aligned_cols=266 Identities=20% Similarity=0.258 Sum_probs=222.7
Q ss_pred EEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 137 VWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
-++.....+... .+..++.|...+.+......+. -+...|.+++| ++.++++|+.|++|++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~----------------~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS----------------GHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhcccc----------------ccccceeeeEECCCCcEEEEecCCceEEE
Confidence 355555555443 6678888887544421111111 13347889999 8899999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~ 292 (475)
|++.... .+.+++.+|...|++++| +|.|+ ++++|+.|++|++||++++++++.+. |..+|+
T Consensus 230 wd~~~~~--~~~~~l~gH~~~v~~~~f--~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is------------ 292 (456)
T KOG0266|consen 230 WDLKDDG--RNLKTLKGHSTYVTSVAF--SPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS------------ 292 (456)
T ss_pred eeccCCC--eEEEEecCCCCceEEEEe--cCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceE------------
Confidence 9994332 335778899999999999 99995 69999999999999999999999998 888999
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--eEEEeecCCCC--eEEEEEecCCCEEEEEeCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDF--SFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~--v~~~~~sp~g~~l~t~s~d 368 (475)
+++|+++|.+|++++.|+.|++||+.++. ++..+.++... +++++|+|++.++++++.|
T Consensus 293 -----------------~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 293 -----------------GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred -----------------EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 99999999999999999999999999998 56777776655 9999999999999999999
Q ss_pred CeEEEEECCCCCceEEEEecCCCc---eEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc-CCCeEEEEEcCCC
Q 011924 369 KTCRIWDLRNLSESVAVLKGNLGA---IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDT 444 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~---v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~fspdg 444 (475)
+++++||++. ...+..+.+|... +.+...++.|+++++|+.|+.|.+||+.++..+..+.+| ...+..+.++|..
T Consensus 356 ~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred CeEEEEEccC-CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc
Confidence 9999999987 7788888887764 334455789999999999999999999999889999999 8999999999999
Q ss_pred CeEEEEEec
Q 011924 445 ESLFIGVWD 453 (475)
Q Consensus 445 ~~l~~~~~D 453 (475)
+++++++++
T Consensus 435 ~~~~s~s~~ 443 (456)
T KOG0266|consen 435 NLIASSSFE 443 (456)
T ss_pred CeeeecCcC
Confidence 999999853
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.1e-27 Score=255.47 Aligned_cols=276 Identities=12% Similarity=0.126 Sum_probs=216.5
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGEL 211 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i 211 (475)
+.|.++...+++. .++.|.+|+..+..... .... .+ .........|.+++| .+.+|++|+.||.|
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~~~~-----~~--~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDG----RDIH-----YP--VVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccc----cccc-----cc--eEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3466777766664 46899999864311000 0000 00 011112346888888 47899999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILL 290 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~ 290 (475)
++||+...... ..+.+|.+.|++++| +| ++. +|++|+.|++|++||+.++..+..+.....+.
T Consensus 558 ~lWd~~~~~~~---~~~~~H~~~V~~l~~--~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~---------- 621 (793)
T PLN00181 558 QVWDVARSQLV---TEMKEHEKRVWSIDY--SSADPT-LLASGSDDGSVKLWSINQGVSIGTIKTKANIC---------- 621 (793)
T ss_pred EEEECCCCeEE---EEecCCCCCEEEEEE--cCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEecCCCeE----------
Confidence 99999865433 556789999999999 87 555 59999999999999999988888777666777
Q ss_pred EEEeecccceEEEEeeeeeeEEEC-CCCcEEEEEeCCCcEEEEECCCCc-eEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
++.|+ ++|.+|++|+.|+.|++||+++++ ++..+.+|...|.+++|. ++.+|++++.|
T Consensus 622 -------------------~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 622 -------------------CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred -------------------EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 88995 589999999999999999998766 577888999999999997 67899999999
Q ss_pred CeEEEEECCCC-----CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-------------ec
Q 011924 369 KTCRIWDLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-------------ID 430 (475)
Q Consensus 369 g~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-------------~~ 430 (475)
++|+|||++.. ..++..+.+|...+..++|+|++++||+|+.|+.|+||+......+..+ ..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 99999999742 3578889999999999999999999999999999999998665433221 12
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+...|.+++|+|++..|++|+.||++..
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 3456999999999999999999998853
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.9e-28 Score=218.91 Aligned_cols=282 Identities=20% Similarity=0.261 Sum_probs=235.5
Q ss_pred ccceeeecccceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC
Q 011924 124 VKSTILHFQLRNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 199 (475)
Q Consensus 124 ~~~~~~h~~lr~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~ 199 (475)
.+..-.|.....++.....+..|. ..|..+.+|+..+++.... +.||+ ..|..+++ ..
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi----------------~~vr~vavS~rH 205 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHI----------------ETVRGVAVSKRH 205 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchh----------------heeeeeeecccC
Confidence 334445666555554444455555 3568999999998866443 44443 35667777 67
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 278 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (475)
.+|++++.|++|++||+..++.. +..++|-+.|.++++ +|.-.. |++|+.|.++|+||+++...+..+. |..+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvI---R~YhGHlS~V~~L~l--hPTldv-l~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVI---RHYHGHLSGVYCLDL--HPTLDV-LVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhH---HHhccccceeEEEec--ccccee-EEecCCcceEEEeeecccceEEEecCCCCc
Confidence 79999999999999999987766 678899999999999 888875 9999999999999999999999888 9999
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN 358 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~ 358 (475)
|. .+.+.|-...+++|+.|++|++||++.|+...++..|...+++++.+|.
T Consensus 280 V~-----------------------------~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 280 VA-----------------------------SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ce-----------------------------eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 99 9999998889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--------
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-------- 430 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-------- 430 (475)
...||+++.|. |+-|++.. +..+..+.+|...|.+++...|| ++++|+.+|.+.+||.++|...+....
T Consensus 331 e~~fASas~dn-ik~w~~p~-g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~ 407 (460)
T KOG0285|consen 331 ENLFASASPDN-IKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE 407 (460)
T ss_pred hhhhhccCCcc-ceeccCCc-cchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence 99999999885 99999977 77777799999999999998887 788999999999999999866544421
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
....|.+.+|...|..|++|..|.++.-+-+
T Consensus 408 sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 408 SEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cccceeEEeecccCceEEeccCCcceEEEec
Confidence 2356889999999999999999998865544
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-28 Score=234.13 Aligned_cols=256 Identities=13% Similarity=0.158 Sum_probs=223.5
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEE
Q 011924 147 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 147 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..-++.|.+|+..+......+.+. ..||.+-.| ..+++++|+.|+.|+|++.++....
T Consensus 31 ~LynG~V~IWnyetqtmVksfeV~------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 31 ALYNGDVQIWNYETQTMVKSFEVS------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred eeecCeeEEEecccceeeeeeeec------------------ccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 345688999999888776665543 235666666 7789999999999999999886655
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
..+..|..-|.+|+. +|...+ ++++|.|-+|++||.+. ..+.++|. |..-|.
T Consensus 91 -~~FeAH~DyIR~iav--HPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM---------------------- 144 (794)
T KOG0276|consen 91 -KTFEAHSDYIRSIAV--HPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM---------------------- 144 (794)
T ss_pred -EEeeccccceeeeee--cCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEE----------------------
Confidence 778899999999999 999886 99999999999999976 46677777 888888
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCC
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~ 379 (475)
+++|+| |.+.+|+++-|++|++|.+.+..+..+|+||...|.|+++-| |..+|+||+.|.+|+|||..+
T Consensus 145 -------qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt- 216 (794)
T KOG0276|consen 145 -------QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT- 216 (794)
T ss_pred -------EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-
Confidence 999999 889999999999999999999999999999999999999988 557999999999999999987
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..|+.++.+|...|..+.|+|.-.++++|+.||+|+||+..+-+....+.-..+++++++-.+.++.+++|...|.+
T Consensus 217 k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 217 KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 89999999999999999999999999999999999999988766555555556789999999998899988766654
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=9e-27 Score=218.91 Aligned_cols=263 Identities=21% Similarity=0.221 Sum_probs=207.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
-|.|+.+ +|.++++.|.||++.+||-.+.+......-...|.+.|.+|+| +|+++. ++++|.|.+++|||+.+.+
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW--sPDs~~-~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW--SPDSTQ-FLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE--CCCCce-EEEecCCceEEEEEeeccc
Confidence 6888888 9999999999999999998777655433435589999999999 999997 9999999999999999999
Q ss_pred eeeeeeccccEE------eccCCceE-----EEEEEeecccceEEEE----eeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 269 LSKHFRFPWPVN------VSSSYCII-----LLCRLLNFMTEKVIIC----LLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 269 ~~~~~~~~~~v~------~s~~~~~l-----~~~~v~d~~~~~~~~~----~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
+++++.....+. +-+.+.++ +.+..++...+..... ...|++++.+|++++|++|+.||.|.-|+
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 999887443322 11122222 2566666666554433 44899999999999999999999999999
Q ss_pred CCCCce-----------EEEeecCC-------------------------------------------------------
Q 011924 334 SMTGKT-----------IASLCGHL------------------------------------------------------- 347 (475)
Q Consensus 334 ~~~~~~-----------~~~l~~h~------------------------------------------------------- 347 (475)
+.+|.. +..+..+.
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 875521 11110000
Q ss_pred ---------------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 348 ---------------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 348 ---------------~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
-...+++++|+++.+|.|++|+.|+||.+.... .....+..|.++|+.++|||||.|||++...
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 013478999999999999999999999996522 3444567799999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 412 DFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.|.+||+.+.+.....-. |.+.|.+++|||+..++|+|+-|..+
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 9999999998876433333 88999999999999999999999765
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=221.59 Aligned_cols=234 Identities=15% Similarity=0.258 Sum_probs=207.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+..+|+.+-+ .--++++++.+++|++||..+.... ..+.+|...+..|.| +..|+. +++++.|-.+++||..
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---~~LrGHt~sv~di~~--~a~Gk~-l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE---RSLRGHTDSVFDISF--DASGKY-LATCSSDLSAKLWDFD 180 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhh---hhhhccccceeEEEE--ecCccE-EEecCCccchhheeHH
Confidence 3456777777 4456777889999999999887653 677889989999999 888875 9999999999999997
Q ss_pred C-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 266 K-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 266 ~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+ .++++... +...|. ++.|-|.|.++++++.|.+|+.|++.+|-++.++
T Consensus 181 ~~~~c~ks~~gh~h~vS-----------------------------~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVS-----------------------------SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred HHHHHHHHhcCccccee-----------------------------eEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 7 44444443 777788 9999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC---------------CCEEEEE
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD---------------GRYMATA 408 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd---------------g~~la~~ 408 (475)
.+|...|..++.+.||.++|+++.|.+|++|-+.+ .++...+..|.-+|-+++|.|. |.+++++
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 99999999999999999999999999999999977 7788889999999999998762 2589999
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.|++|++||+.+|.++.++.+|...|.+++|+|.|+||+++..|++++
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 9999999999999999999999999999999999999999998888874
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=223.28 Aligned_cols=273 Identities=19% Similarity=0.265 Sum_probs=222.7
Q ss_pred ecccceeEEec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 130 HFQLRNLVWAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 130 h~~lr~l~~~~-~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
|-....+.|++ .++++..++.-.+.+++..+......+.- | .-.|++++| +|++|++|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr-----------------F-k~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR-----------------F-KDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh-----------------h-ccceeEEEeecCCeEEEccC
Confidence 33444555554 34677778888888998877655442211 1 125888888 899999999
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSY 285 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~ 285 (475)
..|.|+++|..+ ... .+.+..|..++..+.| +|.++.+|++|+.|+.+++||+.+......+. |...|+
T Consensus 88 ~sG~V~vfD~k~-r~i--LR~~~ah~apv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR----- 157 (487)
T KOG0310|consen 88 ESGHVKVFDMKS-RVI--LRQLYAHQAPVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR----- 157 (487)
T ss_pred CcCcEEEecccc-HHH--HHHHhhccCceeEEEe--cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-----
Confidence 999999999443 323 3677899999999999 99999999999999999999999887654555 888899
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
|.+|+| ++.++++|+.||.|++||+++. ..+.++. |..+|..+.+-|.|.++|
T Consensus 158 ------------------------~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 158 ------------------------CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIA 212 (487)
T ss_pred ------------------------eeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEE
Confidence 999999 5668999999999999999976 5666665 899999999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
+++.. .|+|||+-.+++.+.....|...|+|+++..++..|++|+-|+.|++||+.+.+.+. -....++|.+++.+|+
T Consensus 213 sAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 213 SAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPD 290 (487)
T ss_pred EcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE-eeecccceeeEEecCC
Confidence 99764 799999987677777777799999999999999999999999999999976654443 3457899999999999
Q ss_pred CCeEEEEEecCCcc
Q 011924 444 TESLFIGVWDRTYG 457 (475)
Q Consensus 444 g~~l~~~~~D~~~~ 457 (475)
++.+++|..||.+-
T Consensus 291 d~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVS 304 (487)
T ss_pred CceEEEecccceee
Confidence 99999999997653
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.8e-30 Score=229.43 Aligned_cols=223 Identities=15% Similarity=0.203 Sum_probs=198.6
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..|+|+.++...+|+|..|.+|++||... .+|...+.+|.+.|-|+.+ +.+ ++++||.|.+|++||++++++
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqy----d~r-viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQY----DER-VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CceEEEEecchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeec----cce-EEEecCCCceEEEEeccCCch
Confidence 36999999999999999999999999775 5556888999999999998 344 699999999999999999999
Q ss_pred eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc---eEEEeec
Q 011924 270 SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCG 345 (475)
Q Consensus 270 ~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~l~~ 345 (475)
+.++- |-..|. .+.|+ ..++++++.|.++.+||+.+.. +.+.+.|
T Consensus 270 l~tlihHceaVL-----------------------------hlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG 318 (499)
T KOG0281|consen 270 LNTLIHHCEAVL-----------------------------HLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG 318 (499)
T ss_pred hhHHhhhcceeE-----------------------------EEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence 88766 677777 88886 4589999999999999998664 3456789
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|...|..+.| +.+++++++.|.||++|++.+ ...++++.+|.-.|.|+.+ .|+++++|+.|.+|++||+..|.++
T Consensus 319 HrAaVNvVdf--d~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 319 HRAAVNVVDF--DDKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred hhhheeeecc--ccceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 9999999999 457999999999999999976 8999999999998888877 5899999999999999999999999
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+.+.+|..-|.++.| |.+.|++|..||+++.
T Consensus 394 RvLeGHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred HHHhchHHhhhheee--cCceeeeccccceEEE
Confidence 999999999999999 5679999999999863
No 38
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=231.34 Aligned_cols=271 Identities=17% Similarity=0.237 Sum_probs=229.3
Q ss_pred cccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecC
Q 011924 131 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 208 (475)
Q Consensus 131 ~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~d 208 (475)
|.+.-+-|+ +.+.|..+....|++|+..++....+.++. ...|+++.| +|.+|++|..+
T Consensus 178 fY~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecC------------------CCceEEEEECCCCCEEEEeecC
Confidence 334334466 677788888899999999999877765542 246999999 89999999999
Q ss_pred ceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee-ee-ccccEEeccCC
Q 011924 209 GELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR-FPWPVNVSSSY 285 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~s~~~ 285 (475)
|.|.+||....+.. ..... |.+.|.+++| + +. ++.+|+.++.|..+|++..+.... +. |...|.
T Consensus 239 g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW--~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC----- 305 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKT---RTLRGSHASRVGSLAW--N--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC----- 305 (484)
T ss_pred CeEEEEehhhcccc---ccccCCcCceeEEEec--c--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceee-----
Confidence 99999998876654 34444 9999999999 4 33 499999999999999987655443 44 788898
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFAT 364 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t 364 (475)
.++|+++++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ...+||+
T Consensus 306 ------------------------gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 306 ------------------------GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred ------------------------eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence 999999999999999999999999988889999999999999999999 7789999
Q ss_pred Ee--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE--cCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 365 GN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA--EPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 365 ~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
|+ .|++|++||..+ +..+..+.. .+.|.+|.|++..+.|+++ ..++.|.||+..+...+..+.+|..+|..+++
T Consensus 362 GGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~ 439 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNT-GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL 439 (484)
T ss_pred cCCCcccEEEEEEcCC-CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE
Confidence 75 599999999976 777776664 4589999999999777664 45678999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcceE
Q 011924 441 SPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~l 459 (475)
||||..+++|+.|.+++-+
T Consensus 440 SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFW 458 (484)
T ss_pred CCCCCEEEEecccCcEEec
Confidence 9999999999999998633
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=8e-27 Score=219.38 Aligned_cols=232 Identities=25% Similarity=0.392 Sum_probs=202.8
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..+|+++++ ++++|++|+.+|.|++|++...... .....|...+..+.| +|+++. +++++.++.|++|++.+
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~~-l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAA--SADGTY-LASGSSDKTIRLWDLET 82 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---EEEecCCcceeEEEE--CCCCCE-EEEEcCCCeEEEEEcCc
Confidence 357999999 6799999999999999999866533 445567777888888 999875 88888999999999998
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
++....+. +...+. ++.|+|+++++++++.++.+.+||+++++....+..
T Consensus 83 ~~~~~~~~~~~~~i~-----------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 83 GECVRTLTGHTSYVS-----------------------------SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred ccceEEEeccCCcEE-----------------------------EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 77766666 555777 999999999898888899999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|...+.+++|+|++.++++++.++.|++||++. .+++..+..+...+.++.|+|+++.|++++.++.|++||+.++..+
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 999999999999999999998899999999976 6778888888889999999999999999999999999999988888
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+..|.+.+.++.|+|++.++++++.|+.+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 8777888899999999998888887767765
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=206.93 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=207.0
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.-+++-+.+ +|.+|.+++.|....||--.+++.. -+..+|.+.|+++++ ..+.+. +++|+.|.++++||++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---Gty~GHtGavW~~Di--d~~s~~-liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---GTYDGHTGAVWCCDI--DWDSKH-LITGSADQTAKLWDVE 82 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCcee---eeecCCCceEEEEEe--cCCcce-eeeccccceeEEEEcC
Confidence 4447888888 8999999999999999987555544 677899999999999 777665 9999999999999999
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-----CCcEEEEECC-----
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-----NPDGLLVDSM----- 335 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-----dg~i~iwd~~----- 335 (475)
+|+++..+..+.+|. .+.|+++|++++++.+ .+.|.++|++
T Consensus 83 tGk~la~~k~~~~Vk-----------------------------~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVK-----------------------------RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred CCcEEEEeecCCeeE-----------------------------EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 999999999999999 9999999999888754 4779999998
Q ss_pred --CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 336 --TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 336 --~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
...+...+..+...+..+-|.|-+.+|++|..||.|.+||+++..+.+.....|...|+.++++|+..++++++.|.+
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc
Confidence 445678888888999999999999999999999999999999866778888889999999999999999999999999
Q ss_pred EEEEECCCCee-------------------------------------------------------EEEEeccCCCeEEE
Q 011924 414 VHVYDVKSGYE-------------------------------------------------------KEQEIDFFGEISGI 438 (475)
Q Consensus 414 i~iwd~~~~~~-------------------------------------------------------~~~~~~~~~~i~~l 438 (475)
-++||+.+-.. +..+.+|+|+|+++
T Consensus 214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv 293 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV 293 (327)
T ss_pred ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence 99999875432 22344688999999
Q ss_pred EEcCCCCeEEEEEecCCcc
Q 011924 439 SFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~ 457 (475)
+|+|+|+..++|+.||.++
T Consensus 294 AfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 294 AFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred EECCCCcccccCCCCceEE
Confidence 9999999999999999885
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=6.3e-27 Score=251.87 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=198.2
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
...|.+++| ++++|++|+.||.|++|++.... ..........+...+.+++| ++....+|++++.||+|++|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW--NSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEe--ccCCCCEEEEEeCCCeEEEE
Confidence 457999999 88999999999999999975311 00000111223457888888 76544459999999999999
Q ss_pred ECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceE
Q 011924 263 DMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 263 d~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
|+.+++.+..+. |...|. +++|+| ++.+|++|+.|+.|++||++++..+
T Consensus 561 d~~~~~~~~~~~~H~~~V~-----------------------------~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVW-----------------------------SIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred ECCCCeEEEEecCCCCCEE-----------------------------EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 999988888776 788898 999997 7899999999999999999999998
Q ss_pred EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 341 ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+..+ ..+.+++|++ +|.+|++|+.|++|++||+++...++..+.+|...|.+++|. ++.+|++++.|+.|+|||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 888854 6799999965 799999999999999999987555677888999999999997 6889999999999999999
Q ss_pred CCC------eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 420 KSG------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 420 ~~~------~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
..+ ..+..+.+|...+..++|+|++.+|++|+.|+++..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 743 456778889999999999999999999999987643
No 42
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.3e-26 Score=229.19 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=184.0
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
+...|.+++| ++++|++|+.||+|++|++...+. ......+.+|...|.+++| +|++..+|++++.|++|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEE
Confidence 3458999999 568999999999999999976432 1123456789999999999 998755699999999999
Q ss_pred EEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 261 DFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 261 iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
+||+.+++.+..+. |...|. +++|+|+|.+|++++.|+.|++||+++++.
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~-----------------------------sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQIT-----------------------------SLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEECCCCeEEEEEcCCCCceE-----------------------------EEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 99999998887776 777888 999999999999999999999999999999
Q ss_pred EEEeecCCCC-eEEEEEecCCCEEEEEe----CCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEc-CCC
Q 011924 340 IASLCGHLDF-SFASAWHPNGVTFATGN----QDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAE-PAD 412 (475)
Q Consensus 340 ~~~l~~h~~~-v~~~~~sp~g~~l~t~s----~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~-~dg 412 (475)
+..+.+|.+. +..+.|.|++..+++++ .|++|++||+++...++.....+. ..+..+.|+|++++|++++ .|+
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 9999999865 45678999887777654 478999999998666666554333 4566678999999999887 599
Q ss_pred eEEEEECCCCeeEEEEec-cCCCeEEEEEcCC
Q 011924 413 FVHVYDVKSGYEKEQEID-FFGEISGISFSPD 443 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspd 443 (475)
.|++||+.++........ +..++.+++|.|.
T Consensus 283 ~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 283 NIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999998876655432 3456788989884
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=4e-26 Score=214.59 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=191.9
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
.+.+.|....+++.-+..+.....+. .++.++..|--.++.|-++++|...|+|+||+....+.
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iY----------------tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h 93 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIY----------------TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH 93 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeee----------------ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce
Confidence 35566666666666655444332221 11222223444444788888888888888888765332
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---CCCeEEEEE--CCCCeeee--------eeeccccEEeccCCceE
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---NDCGVRDFD--MGKYQLSK--------HFRFPWPVNVSSSYCII 288 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---~dg~v~iwd--~~~~~~~~--------~~~~~~~v~~s~~~~~l 288 (475)
.. ...+.--.++|..|+| +.++++++++|- +-|.+.+|| -..|+... .|+..+|.+....+..
T Consensus 94 iL-Knef~v~aG~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD- 169 (603)
T KOG0318|consen 94 IL-KNEFQVLAGPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDD- 169 (603)
T ss_pred ee-eeeeeeccccccccee--CCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCC-
Confidence 21 2223334455555666 555555444431 112344443 11111111 1111222220000000
Q ss_pred EEEEEeeccc----ceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee---cCCCCeEEEEEecCCCE
Q 011924 289 LLCRLLNFMT----EKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVT 361 (475)
Q Consensus 289 ~~~~v~d~~~----~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~---~h~~~v~~~~~sp~g~~ 361 (475)
..+-++.... .....+...|+|+.|+|||.++++++.||++.+||-.+|..+..|. +|.+.|++++|+||+..
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 0111111000 0001112245599999999999999999999999999999999998 89999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCC---ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLG---AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~---~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
|+|++.|.+++|||+.. .++++++..... .--.+.|. ...|++.+.+|+|.+++...+..+.++.+|...|+++
T Consensus 250 ~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999976 788888765332 22355565 5589999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
..+|++.+|++|+.||.+-.+
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EEcCCCCEEEeeccCceEEEE
Confidence 999999999999999876443
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-26 Score=198.72 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=198.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEE-eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
+|-.++| .|..|++||.|..|++|+........|. .+-.+|+..|..++| +|.|++ |+++|.|+++-||.-..
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~~-La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGRY-LASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCcE-EEEeeccceEEEeecCC
Confidence 6888888 2558999999999999999854444443 344579999999999 999995 99999999999997653
Q ss_pred --Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceE
Q 011924 267 --YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTI 340 (475)
Q Consensus 267 --~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~ 340 (475)
++++..+. |...|. |++||++|++||++++|..+-||.+..+ .+.
T Consensus 93 ~efecv~~lEGHEnEVK-----------------------------~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVK-----------------------------CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred CceeEEeeeecccccee-----------------------------EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 56777777 888999 9999999999999999999999998744 467
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--CCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR--NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
..|++|...|..+.|||...+|+++|.|.+|++|.-. ....++.++.+|...|.+++|+|.|..|++++.|++|+||-
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 8899999999999999999999999999999999875 22468999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 419 VKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
..+.- ...|.+++..+.|. .-.|++++.|+.+....+-
T Consensus 224 ~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 224 LYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred eccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 66431 12367889999998 4589999999887544433
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=227.30 Aligned_cols=233 Identities=16% Similarity=0.248 Sum_probs=207.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
+|.++.+ ....++++-.+|.|.+|+.++.... +.+.-..-+|.+..| -+-.++ +++|+.|..||+|+..+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---ksfeV~~~PvRa~kf--iaRknW-iv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---KSFEVSEVPVRAAKF--IARKNW-IVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceee---eeeeecccchhhhee--eeccce-EEEecCCceEEEEecccce
Confidence 5667766 6779999999999999998875544 333444556777777 455556 9999999999999999999
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeecC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGH 346 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h 346 (475)
.+..|. |+.-++ |++.+|.-.+++++++|-.|++||-..+ .+.++++||
T Consensus 89 kV~~FeAH~DyIR-----------------------------~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 89 KVKTFEAHSDYIR-----------------------------SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred eeEEeecccccee-----------------------------eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 999999 999999 9999999999999999999999998754 578899999
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC--CEEEEEcCCCeEEEEECCCCe
Q 011924 347 LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 347 ~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg--~~la~~~~dg~i~iwd~~~~~ 423 (475)
+..|++++|+| |.+.+|+++-|+||+||.+.. ..+..++.+|...|.++.|-|-| .+|++|+.|.+|+|||.++..
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 99999999999 889999999999999999976 78899999999999999998755 699999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
++.++.+|...|+.+.|+|.-..+++|+.||+++-+
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 999999999999999999999999999999998643
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=219.32 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=202.7
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
.-++.|.+|+..+-....+ +.| +.+.|.|+.++.+.|++|+.|.+|++||+.+.+.. .+
T Consensus 214 lrDnTikiWD~n~~~c~~~--L~G----------------HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l---~t 272 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKI--LTG----------------HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL---NT 272 (499)
T ss_pred cccCceEEeccccHHHHHh--hhc----------------CCCcEEeeeccceEEEecCCCceEEEEeccCCchh---hH
Confidence 4568888998765444332 222 23479999999999999999999999999987765 67
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee---eeee-ccccEEeccCCceEEEEEEeecccceEEE
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
+.+|...|-.+.| + +| +++++|.|.++++||+.....+ +.+. |...|+
T Consensus 273 lihHceaVLhlrf--~-ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN----------------------- 324 (499)
T KOG0281|consen 273 LIHHCEAVLHLRF--S-NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN----------------------- 324 (499)
T ss_pred HhhhcceeEEEEE--e-CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-----------------------
Confidence 7889999999998 3 33 5999999999999999764422 2222 667788
Q ss_pred EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE
Q 011924 304 CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 383 (475)
Q Consensus 304 ~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~ 383 (475)
.+.|+ .+++++++.|.+|++|++.++..++++.+|...|.|+.+ .++++++|+.|.+|++||+.. +.++
T Consensus 325 ------vVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-G~cL 393 (499)
T KOG0281|consen 325 ------VVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACL 393 (499)
T ss_pred ------eeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-cHHH
Confidence 66664 569999999999999999999999999999999998887 789999999999999999977 8999
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE---------EEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK---------EQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
+.+.+|..-|++++|. .+.+++|..||.|+|||+.++... .....|.|.|..+.| |...|++++.|.
T Consensus 394 RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999999999999995 568999999999999999876543 344458899999999 456888888887
Q ss_pred Cc
Q 011924 455 TY 456 (475)
Q Consensus 455 ~~ 456 (475)
++
T Consensus 470 tI 471 (499)
T KOG0281|consen 470 TI 471 (499)
T ss_pred eE
Confidence 65
No 47
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2e-25 Score=224.58 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=178.4
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCce-----EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS-----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
..+|.+++| ++++|++|+.||.|++|++...... .....+.+|...|.+++| +|++..++++++.|++|+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEE
Confidence 357999999 3689999999999999999754321 112345678899999999 999987778999999999
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+||+.+++....+.+...+. +++|+|+|.+|++++.|+.|+|||+++++.+
T Consensus 152 IWDl~tg~~~~~i~~~~~V~-----------------------------SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 152 IWDIENEKRAFQINMPKKLS-----------------------------SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEECCCCcEEEEEecCCcEE-----------------------------EEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 99999988777777777788 9999999999999999999999999999999
Q ss_pred EEeecCCCCeEE-----EEEecCCCEEEEEeCCC----eEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEc
Q 011924 341 ASLCGHLDFSFA-----SAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 341 ~~l~~h~~~v~~-----~~~sp~g~~l~t~s~dg----~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~ 409 (475)
..+.+|.+.+.+ ..|++++.+|++++.++ +|+|||+++...++..+..+ .+.+......++|.++++|+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 999999876543 33558889999988764 79999999767777665433 33343444456789999999
Q ss_pred CCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCC
Q 011924 410 PADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPD 443 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspd 443 (475)
.|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987742 2222 24567899999996
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-27 Score=199.40 Aligned_cols=229 Identities=15% Similarity=0.127 Sum_probs=201.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.+.+|.++.+ +|++.+++|.|.+|++|+.... .+.++..+|...|..++. +.++.. |++|+.|..|.+||++
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~--s~Dnsk-f~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAAL--SSDNSK-FASCGGDKAVQVWDVN 89 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccc--cccccc-cccCCCCceEEEEEcc
Confidence 3457889888 9999999999999999997653 345888899989988888 778776 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--CceEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKTIAS 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~ 342 (475)
+|+..+.+. |...|+ .++|+.+...+++|+-|..+++||-++ .++++.
T Consensus 90 TGkv~Rr~rgH~aqVN-----------------------------tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVN-----------------------------TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cCeeeeecccccceee-----------------------------EEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 999999999 999999 999999999999999999999999874 568999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+....+.|.++.. .+..|++|+.||++|.||+|. +....-.-+| +|+++.|+++|+.++.++.|++|++.|-.+|
T Consensus 141 ldea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~-G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRK-GTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhcCceeEEEe--cccEEEeeccCCcEEEEEeec-ceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchh
Confidence 9888899999988 567899999999999999998 6655544444 8999999999999999999999999999999
Q ss_pred eeEEEEeccCCC--eEEEEEcCCCCeEEEEEecCCc
Q 011924 423 YEKEQEIDFFGE--ISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 423 ~~~~~~~~~~~~--i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.+..+++|... =...+++.....+++|+.||.+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 999999998753 3566788888899999999865
No 49
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.2e-25 Score=225.13 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=177.7
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCC---------c-eEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeE
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPG---------V-SFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGV 259 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~---------~-~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v 259 (475)
.++..+|++..+++++.+.....|+..... . ......+.+|.+.|.+++| +| ++. +|++|+.|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~-~LaSgS~DgtI 100 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQ-KLFTASEDGTI 100 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCC-EEEEEeCCCEE
Confidence 344555555555655555555555533211 1 1011245689999999999 99 666 59999999999
Q ss_pred EEEECCCCe-------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEE
Q 011924 260 RDFDMGKYQ-------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGL 330 (475)
Q Consensus 260 ~iwd~~~~~-------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~ 330 (475)
++||+.++. .+..+. |...|. +++|+|++ ++|++++.|+.|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~-----------------------------~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVG-----------------------------IVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEE-----------------------------EEEeCcCCCCEEEEEeCCCEEE
Confidence 999997643 233344 666777 99999975 6999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCc-eEEEEEccCCCEEEEEc
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA-IRSIRYTSDGRYMATAE 409 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~spdg~~la~~~ 409 (475)
|||+++++.+..+.+|...|.+++|+|+|++|++++.|++|+|||+++ ++.+..+.+|.+. +..+.|.|++..|++++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 999999999999999999999999999999999999999999999987 6778888888764 44678999887777654
Q ss_pred ----CCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 410 ----PADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 410 ----~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
.|+.|++||+++........ .....+....|++++.+|++|+. |+++
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 47899999998765433332 23345667789999999999874 7765
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=213.67 Aligned_cols=282 Identities=15% Similarity=0.113 Sum_probs=207.7
Q ss_pred ecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEe
Q 011924 139 ATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKH 215 (475)
Q Consensus 139 ~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~ 215 (475)
-+++-.++. .-++.|..|+...-.. . +.....+-|. ..++|.++.| .+..|++.+...+.+++|
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMda-s-~~~fr~l~P~-----------E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDA-S-MRSFRQLQPC-----------ETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred cCCCceeeeccccceEEEEecccccc-c-chhhhccCcc-----------cccccceeeecCCCCeEEEEecCcceeEEc
Confidence 344445555 3478999999643111 1 1111112222 2346777777 777777777778888888
Q ss_pred CCCCCceEEE---------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeeec--cccEEecc
Q 011924 216 LDRPGVSFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFRF--PWPVNVSS 283 (475)
Q Consensus 216 ~~~~~~~~~~---------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~--~~~v~~s~ 283 (475)
-+......|. ..+.+|...+++.+| +|..+..|++++.||++|+|++...+ ....+.+ .+.-..
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv-- 318 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV-- 318 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc--
Confidence 7654433332 345688889999999 99988889999999999999997643 2222321 111111
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--e-EEEeecCCC--CeEEEEEecC
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--T-IASLCGHLD--FSFASAWHPN 358 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~-~~~l~~h~~--~v~~~~~sp~ 358 (475)
.++..+|+|+|+++|+|..||.|.+|+..... + ...-..|.. .|+|+.||++
T Consensus 319 -----------------------~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 319 -----------------------PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred -----------------------CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 11278999999999999999999999975322 2 223346776 8999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcC------CCeEEEEECCCCeeEEEEec
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~------dg~i~iwd~~~~~~~~~~~~ 430 (475)
|++|++-+.|+++++||+|+..+++.+..+-. -+-+.++|||+.++|++|+. .|.+.+||..+-..+..+.-
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 99999999999999999999889988877633 35678999999999999864 46899999888877777766
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
....|..+.|+|.=+.|++|+.||++..+.
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEEE
Confidence 677899999999999999999998876443
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.1e-26 Score=196.11 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=179.7
Q ss_pred EeeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCC---Ceeeeeee--ccccEEeccCCceEEEEEEeeccc
Q 011924 225 SRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGK---YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMT 298 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~ 298 (475)
.....+|.+.+..++| +|. |. +|++|+.|+.||+|+... ..+...+. |...|+
T Consensus 7 ~~~~~gh~~r~W~~aw--hp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR------------------ 65 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAW--HPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR------------------ 65 (312)
T ss_pred EEeecCCCCcEEEEEe--ccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheee------------------
Confidence 4566788889999999 888 65 699999999999999974 33444443 777888
Q ss_pred ceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 299 EKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 299 ~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
+++|+|.|++|++++-|.++.||.-..+ +++.+|+||...|.|++|+++|++|||+++|+.|=||.+
T Consensus 66 -----------svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 66 -----------SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred -----------eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 9999999999999999999999986543 678999999999999999999999999999999999999
Q ss_pred CC--CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC---CCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 377 RN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK---SGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 377 ~~--~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.. ...+...+++|..-|..+.|+|...+|++++.|++|++|.-. .-.+..++.+|.+.|.+++|+|.|..|++++
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 73 235889999999999999999998999999999999999865 2356788888999999999999999999999
Q ss_pred ecCCcceEEEE
Q 011924 452 WDRTYGSLLEY 462 (475)
Q Consensus 452 ~D~~~~~ll~~ 462 (475)
.|+++.....+
T Consensus 215 dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 215 DDGTVSIWRLY 225 (312)
T ss_pred CCcceEeeeec
Confidence 99998755543
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6e-26 Score=205.67 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=215.9
Q ss_pred eeeecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-----cCcE
Q 011924 127 TILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-----KDKL 201 (475)
Q Consensus 127 ~~~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-----~~~~ 201 (475)
.+.|-.....+-..+++.+...-++.+++|+........+ .|| ..+|.++++ ....
T Consensus 101 ~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~---~Gh----------------t~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTI---VGH----------------TGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred cccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEE---ecC----------------CcceeeeEEEecCCccce
Confidence 3456555566655556655556789999998643332332 222 235666666 2346
Q ss_pred EEEEecCceEEEEeCCCCCceE-EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeeecccc
Q 011924 202 LVAGGFQGELICKHLDRPGVSF-CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFRFPWP 278 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~ 278 (475)
+++++.|.++++|.++.+.... +.....+|...|.+|.. .++|.. +++||.|.+|.+|+.++.. ..........
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe--cCCCCe-EEeecccceeeecccCCCccccccccchhhh
Confidence 9999999999999988765332 22333489999999999 899986 9999999999999943210 0000000000
Q ss_pred EE--eccCCceEEEEEEeecccceEEE----EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 279 VN--VSSSYCIILLCRLLNFMTEKVII----CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 279 v~--~s~~~~~l~~~~v~d~~~~~~~~----~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
-+ +-+ ...++.++. +..+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++.+ ...+++
T Consensus 239 k~~~~~~-----------~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 239 KKQKREK-----------EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC 305 (423)
T ss_pred hhhhhhh-----------cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence 00 000 000001111 111444999998 77889999999999999999999988885 456899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCe-eEEEE
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQE 428 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~-~~~~~ 428 (475)
+..+|..++||+|+.|..+++||.|+... ....+.+|.+.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+
T Consensus 306 i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred eecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 99999999999999999999999997543 567788999999999999965 578899999999999999887 88999
Q ss_pred eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 429 IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+|...|.++.|+ ++..|++|+.|.++.
T Consensus 386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 386 AGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ccCCceEEEEecc-CCceEEeccCcceEE
Confidence 9999999999998 457999999998764
No 53
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-27 Score=212.46 Aligned_cols=260 Identities=15% Similarity=0.236 Sum_probs=207.2
Q ss_pred eeEEEEEEcC---cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAVKD---KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~~~---~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|.||+-+. ..+++|+.||.|++||+.. ..|..++..|.+.|..|++ .. . .+++++.|.+|+.|.+..
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---R~~~~~f~AH~G~V~Gi~v--~~--~-~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---RECIRTFKAHEGLVRGICV--TQ--T-SFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhh---hhhhheeecccCceeeEEe--cc--c-ceEEecCCcceeeeeccC
Confidence 3577777722 5689999999999999876 3345788899999999999 44 3 388888999999999865
Q ss_pred CeeeeeeeccccEE---eccCCceEE----EEEEeecccceEEEEee----eeeeEEECC-CCcEEEEEeCCCcEEEEEC
Q 011924 267 YQLSKHFRFPWPVN---VSSSYCIIL----LCRLLNFMTEKVIICLL----CLQHSSQSP-DGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 267 ~~~~~~~~~~~~v~---~s~~~~~l~----~~~v~d~~~~~~~~~~~----~i~~~~~sp-~g~~l~~~~~dg~i~iwd~ 334 (475)
...+++.....+. -+..+...+ .+.|||.....++.... .|.++.|+| ....|++++.|+.|.|||+
T Consensus 139 -~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 139 -PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred -CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 3444443222221 111111111 47899998888776655 788999999 5567777889999999999
Q ss_pred CCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
+++++++.+. -...-..++|+|.+-.|++|+.|..+..||+|+...++....+|.++|..+.|||.|+-+++||.|.+|
T Consensus 218 R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 218 RQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred ccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 9999887765 344567899999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 415 HVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
+||.+..+...-.+.. -...|.++.||.|.+|+++|+.|++++-+
T Consensus 297 RIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred EEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence 9999987755443322 23579999999999999999999998643
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-24 Score=192.52 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=209.0
Q ss_pred eeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec--Cc
Q 011924 135 NLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF--QG 209 (475)
Q Consensus 135 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~--dg 209 (475)
.+-++.++..+... .+..+.+|+..+++....++.... .|..++| ..+.++.++. |.
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky------------------G~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY------------------GVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc------------------cccEEEEecCCceEEEccCCCCC
Confidence 34466666666664 456999999999988877664311 2334444 5566666655 88
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
+|+..++..++.. +.+.+|...|+.|++ +|-+.. +++++.|++||+||++..++...+. ...++.
T Consensus 81 tIryLsl~dNkyl---RYF~GH~~~V~sL~~--sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~-------- 146 (311)
T KOG1446|consen 81 TIRYLSLHDNKYL---RYFPGHKKRVNSLSV--SPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA-------- 146 (311)
T ss_pred ceEEEEeecCceE---EEcCCCCceEEEEEe--cCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcce--------
Confidence 9999999887655 788999999999999 999986 9999999999999999887776666 344444
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEee---cCCCCeEEEEEecCCCEEE
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLC---GHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~---~h~~~v~~~~~sp~g~~l~ 363 (475)
+|+|+|-++|++.....|++||++.- .+-.++. +.......+.|+|||++|+
T Consensus 147 -----------------------AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 147 -----------------------AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred -----------------------eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 99999999999988889999999842 3444443 3456788999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCce---EEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEE
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAI---RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGIS 439 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v---~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~ 439 (475)
.+...+.+.+.|.-. +.....+..+...- -...|+|||+++++|+.||+|++|++++|..+....+ +.+++.++.
T Consensus 204 lsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred EEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 999999999999977 77777777655322 4788999999999999999999999999999999888 689999999
Q ss_pred EcCCCCeEEEEE
Q 011924 440 FSPDTESLFIGV 451 (475)
Q Consensus 440 fspdg~~l~~~~ 451 (475)
|+|.--.+++++
T Consensus 283 fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 283 FNPRYAMFVSAS 294 (311)
T ss_pred cCCceeeeeecC
Confidence 999866666554
No 55
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=212.52 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=215.3
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
|-.....+.+ ..+..|.+|+...++...+-.++| ...+|+++.+ ++..+++.+.|+.+++|
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG----------------s~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG----------------SLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc----------------cCCCcceeeecCCCceEEeecCCCceeee
Confidence 5555555555 356789999987766332222222 2246889999 78899999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEe
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLL 294 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~ 294 (475)
+++..... .++.+|...|+++.| ...... +++|+.|.+|++||+....+.++.-....++
T Consensus 247 nvd~~r~~---~TLsGHtdkVt~ak~--~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn-------------- 306 (459)
T KOG0288|consen 247 NVDSLRLR---HTLSGHTDKVTAAKF--KLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCN-------------- 306 (459)
T ss_pred eccchhhh---hhhcccccceeeehh--hccccc-eeeccccchhhhhhhhhhheecccccccccc--------------
Confidence 99876655 567789999999999 555444 9999999999999999988888776666666
Q ss_pred ecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 295 NFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 295 d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
.+..+ ...+++|..|++|+.||++++.++.....+. .|.++..+++|..+.+++.|.++.+.
T Consensus 307 ---------------DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 307 ---------------DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred ---------------ceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 66665 5678888899999999999999999988765 89999999999999999999999999
Q ss_pred ECCCCCceEEEEecCC----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC--CeEEEEEcCCCCeEE
Q 011924 375 DLRNLSESVAVLKGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG--EISGISFSPDTESLF 448 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~fspdg~~l~ 448 (475)
|+++ ....+.+.+.. .-.+.+.|||++.|+|+|+.||.|+||++.++++...+..... .|.+++|+|.|..|+
T Consensus 369 DlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 369 DLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eccc-ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9987 66666665421 3478899999999999999999999999999998887776444 599999999999999
Q ss_pred EEEecCCcc
Q 011924 449 IGVWDRTYG 457 (475)
Q Consensus 449 ~~~~D~~~~ 457 (475)
+++.++.+.
T Consensus 448 sadk~~~v~ 456 (459)
T KOG0288|consen 448 SADKQKAVT 456 (459)
T ss_pred cccCCcceE
Confidence 998876553
No 56
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=219.70 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=214.6
Q ss_pred cceeEEecCCC-eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecC
Q 011924 133 LRNLVWATSKH-DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQ 208 (475)
Q Consensus 133 lr~l~~~~~~~-~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~d 208 (475)
+..++...+.+ .+....+.++.+++..+.+...- +.+ .+..|..|++ ..++|+.++..
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~-----------------ivG-~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ-----------------IVG-YNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehh-----------------hcC-CchhheeeeecCCccceEEEEeCC
Confidence 34444444444 44446778888886544332211 111 2236889999 56999999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee----eeee-eccccEEecc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----SKHF-RFPWPVNVSS 283 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~----~~~~-~~~~~v~~s~ 283 (475)
+.++++++.+. .| .+..+|...|.+++. ..+|. +|++||.|+++++|.++.+.. +... .|...|.
T Consensus 346 ~~lr~y~~~~~---~c-~ii~GH~e~vlSL~~--~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg--- 415 (775)
T KOG0319|consen 346 PELRLYTLPTS---YC-QIIPGHTEAVLSLDV--WSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG--- 415 (775)
T ss_pred CceEEEecCCC---ce-EEEeCchhheeeeee--cccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccc---
Confidence 99999976653 33 388899999999985 55664 699999999999998844332 2222 2666777
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCce-----EE----EeecCCCCeEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT-----IA----SLCGHLDFSFAS 353 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~-----~~----~l~~h~~~v~~~ 353 (475)
+++++. ....|++++.|+++++|++...+. +. +...|...|+|+
T Consensus 416 --------------------------ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 416 --------------------------AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred --------------------------eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 888876 346789999999999999975221 11 223588999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
+.+|+.+++||||+|++++||++.+ .....++.+|...|+++.|+|..+.||++|.|.+|+||.+.+..++.++.+|..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred EecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 9999999999999999999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcc
Q 011924 434 EISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|..+.|-.+|+.|++++.||-++
T Consensus 549 aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999999998764
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.2e-25 Score=196.92 Aligned_cols=212 Identities=20% Similarity=0.324 Sum_probs=177.8
Q ss_pred cccceeEEEEEE--cCcEEEEEecCceEEEEeCCC------C---------CceEEEeeecCCCCceeEEEEEeCCCCCe
Q 011924 186 GFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR------P---------GVSFCSRTTYDDNAITNAVEIYGSPSGAV 248 (475)
Q Consensus 186 ~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~------~---------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~ 248 (475)
+.+..++.+-+| +|.++++|+.|-.|++.+++. . .....++++.+|...|+++.| +|....
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F--HPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF--HPRETI 186 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee--cchhhe
Confidence 334556666666 999999999999999999861 1 112346888999999999999 998874
Q ss_pred EEEEEeCCCeEEEEECCCCeee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
|++|++|++|++||+.+.... +.|....+|. +++|+|.|.+|++|.+
T Consensus 187 -LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vr-----------------------------siSfHPsGefllvgTd 236 (430)
T KOG0640|consen 187 -LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVR-----------------------------SISFHPSGEFLLVGTD 236 (430)
T ss_pred -EEeccCCCeEEEEecccHHHHHHHHHhhccceee-----------------------------eEeecCCCceEEEecC
Confidence 999999999999999764433 4455677888 9999999999999999
Q ss_pred CCcEEEEECCCCceEEEe---ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CC-CceEEEEEcc
Q 011924 326 NPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NL-GAIRSIRYTS 400 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~-~~v~~l~~sp 400 (475)
...+++||+.+-++...- .+|.+.|+++.+++.+++-+||+.||.|+|||--. .+++.++.. |. ..|.+..|+.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEcc
Confidence 999999999988765433 35899999999999999999999999999999866 778877754 43 4799999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+|+|+++.+.|..|++|.+.++..+..+.+
T Consensus 316 n~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred CCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 999999999999999999999877665543
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-25 Score=221.47 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=215.6
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
...+.|..|+-..+....-+ .+ +.++|..++| .+.++|+||.|-.|+||+... ..|.
T Consensus 28 lHsG~IQlWDYRM~tli~rF--de----------------HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---rrcl 86 (1202)
T KOG0292|consen 28 LHSGVIQLWDYRMGTLIDRF--DE----------------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---RRCL 86 (1202)
T ss_pred ecCceeeeehhhhhhHHhhh--hc----------------cCCccceeeecCCCCeEEecCCccEEEEEeccc---ceeh
Confidence 45688999997665443211 11 3357889999 788999999999999999876 4455
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
.++.+|-.-|..+.| ++.-.+ ++++|.|.+||||++.+++++..+. |...|.
T Consensus 87 ftL~GHlDYVRt~~F--HheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVM------------------------ 139 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFF--HHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM------------------------ 139 (1202)
T ss_pred hhhccccceeEEeec--cCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEE------------------------
Confidence 778899999999999 999888 9999999999999999999999988 888899
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--------C---------------------ceEEEeecCCCCeEEEEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--------G---------------------KTIASLCGHLDFSFASAW 355 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------~---------------------~~~~~l~~h~~~v~~~~~ 355 (475)
|.+|+|...++++++-|.+|++||+.. + -..+.++||...|.-++|
T Consensus 140 -----cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 140 -----CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred -----eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999999999999999999852 1 012457899999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 356 HPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 356 sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
||.-.+|++|+.|..|++|.+..... .+-+..+|.+.|.++-|+|...++++.+.|++|+|||+...+.+.++..-.++
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence 99999999999999999999964221 46677899999999999999999999999999999999998889888877889
Q ss_pred eEEEEEcCCCCeEEEEEecC
Q 011924 435 ISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.++-+|..+.+++|-..|
T Consensus 295 FW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EEEEEecCCcceeeeecCCc
Confidence 99999999998776654333
No 59
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.9e-25 Score=203.41 Aligned_cols=292 Identities=13% Similarity=0.179 Sum_probs=218.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCce-EEEecc----CCCCCCCCCCCCccccccceeEEEEEE--cCcEEEE
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRS-QVLNVS----GHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvs 204 (475)
+..++..+....+|.+ .++.|.+|+..+++.. .++... .+..|... -..-+...|.++++ ++++|++
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~-----~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE-----SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc-----ccccccceeEEEEEcCCCcEEEe
Confidence 3445566666777775 4588999999999865 333321 12111111 11123346777777 9999999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEecc
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~ 283 (475)
|+.+..|.||+.++.... +.+.+|.+.|.+++|..-+ .-+++++.|++|++|+++....+.++- |+..|.
T Consensus 220 gg~d~~v~Iw~~~t~ehv---~~~~ghr~~V~~L~fr~gt---~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~--- 290 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHV---KVFKGHRGAVSSLAFRKGT---SELYSASADRSVKVWSIDQLSYVETLYGHQDGVL--- 290 (479)
T ss_pred cCCCceEEEecCcccchh---hcccccccceeeeeeecCc---cceeeeecCCceEEEehhHhHHHHHHhCCcccee---
Confidence 999999999999887765 5578999999999994333 348899999999999998877766554 888888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
.+....-++.+-+|+.|+++++|++.... ...+.+|.+.+-|++|-.+ ..|+
T Consensus 291 --------------------------~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 291 --------------------------GIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred --------------------------eechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-ccee
Confidence 77777777878888899999999995333 3467789999999999754 6799
Q ss_pred EEeCCCeEEEEECCCCCceEEEEec-C-----------CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE---EE
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKG-N-----------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE---QE 428 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~-~-----------~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~---~~ 428 (475)
+|+.+|.|.+|++.. .+++.+... | ...|++++..|...++|+|+.+|.|++|-+..+.... ..
T Consensus 343 sGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence 999999999999976 666665542 1 1278999999999999999999999999998883322 22
Q ss_pred eccCCCeEEEEEcCCCCeEEEE-EecCCcceEEEEEeecc
Q 011924 429 IDFFGEISGISFSPDTESLFIG-VWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~-~~D~~~~~ll~~~~~~~ 467 (475)
....|-|++++|+++|++|++| +....+|.+.-...+.+
T Consensus 422 ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~~ 461 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGKN 461 (479)
T ss_pred cccccEEEEEEEccCCCEEEEecccccccceeeEeecccc
Confidence 2367899999999999988877 44555665555544433
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=9.3e-26 Score=209.20 Aligned_cols=234 Identities=16% Similarity=0.206 Sum_probs=190.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEE-------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCS-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~- 269 (475)
+..++++++..|.+.|||.......... ..+.+|.+.-..|+| ++.....+++++.|++|++||+.....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW--n~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW--NRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc--ccccceeEeeccCCCcEEEEeccccccC
Confidence 6778889999999999998654422211 145566665567888 887777899999999999999975332
Q ss_pred ------eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC--CCce
Q 011924 270 ------SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM--TGKT 339 (475)
Q Consensus 270 ------~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~--~~~~ 339 (475)
...+. |...|. .++|+| ...+|+++++|+.+.|||+| +.++
T Consensus 214 ~~~~~p~~~~~~h~~~Ve-----------------------------DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVE-----------------------------DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred CccccceEEeecCCccee-----------------------------hhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 22333 677777 999999 67789999999999999999 5667
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEE
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVY 417 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iw 417 (475)
.....+|.+.+.|++|+| ++..|||||.|++|.+||+|+...+++++.+|...|.++.|||+. ..||+++.|+.+.||
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 777889999999999999 889999999999999999999999999999999999999999955 689999999999999
Q ss_pred ECCCC--------------eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 418 DVKSG--------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 418 d~~~~--------------~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
|+..- +.+..-.+|.+.|..+.|+|+..+++++..+-.+-++.+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 98642 1234445788899999999999998887777655444443
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.3e-26 Score=223.75 Aligned_cols=233 Identities=14% Similarity=0.241 Sum_probs=205.6
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|..++| ..-+++++-.+|.|++||.+-.... ..+.+|.++|..|.| +|.+.. |++|+.|..|++|+..+.
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~F--H~~qpl-FVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDF--HPTQPL-FVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHH---hhhhccCCccceeee--cCCCCe-EEecCCccEEEEEecccc
Confidence 35667777 6779999999999999998754433 667889999999999 999985 999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+++.++. |-..|+ .+.|++.-.+++++++|.+|+||+.++++++..++||
T Consensus 84 rclftL~GHlDYVR-----------------------------t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVR-----------------------------TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred eehhhhccccceeE-----------------------------EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC
Confidence 9888776 788888 9999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-------C---------------------ceEEEEecCCCceEEEEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-------S---------------------ESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-------~---------------------~~~~~~~~~~~~v~~l~~ 398 (475)
..+|.|.+|||...+++++|-|.||||||+... + -..+.+.+|.-.|.-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999999999999999999999998421 1 023456789999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCC--CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 399 TSDGRYMATAEPADFVHVYDVKS--GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|.-..+++|+.|..|++|.+.. .+.+-+..+|.+.|+++.|+|....|++.+.|++++
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 99999999999999999998754 356667788999999999999999999999888876
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.2e-25 Score=202.00 Aligned_cols=235 Identities=17% Similarity=0.218 Sum_probs=195.6
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
++.--|+++...++.+++|+.||.+++|+.... +..+..+|.+++..++|+........|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 445578888888999999999999999997632 2467789999999888875555445699999999999999887
Q ss_pred Ceeee-----eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC------
Q 011924 267 YQLSK-----HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM------ 335 (475)
Q Consensus 267 ~~~~~-----~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~------ 335 (475)
+.... .-.|..+|. +++..++|..+++|+.|..|.||+..
T Consensus 179 ~~~~~~~~~~~~GHk~~V~-----------------------------sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVD-----------------------------SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred chhhhhHHhHhccccccee-----------------------------EEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 65432 224788888 99999999999999999999999921
Q ss_pred -------------------CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 336 -------------------TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 336 -------------------~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
++.++..+.||..+|.++.|++ ...++++++|.+|+.||+.. +..+..+.+. .++.++
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~-ksl~~i 306 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTN-KSLNCI 306 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccceeeeecC-cceeEe
Confidence 1236678899999999999988 67899999999999999987 6777777754 478999
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCe---eEEEEeccCCCeEEEEEcCCCCeE-EEEEecCCcc
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGY---EKEQEIDFFGEISGISFSPDTESL-FIGVWDRTYG 457 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~fspdg~~l-~~~~~D~~~~ 457 (475)
..+|..++||+|+.|..|++||.+++. ...++.+|.+.|.++.|+|...++ ++|+.|+++.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 999999999999999999999998753 456788999999999999977655 5678888764
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.6e-25 Score=187.04 Aligned_cols=260 Identities=12% Similarity=0.101 Sum_probs=209.6
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~ 212 (475)
.-+..+++...+. ++..+++|+++.+.......- ++..|..++. +...+++||.|..+.
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg------------------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG------------------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecC------------------CCceeeeccccccccccccCCCCceEE
Confidence 3366666665554 678899999988866554332 2235666666 888999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--Ceeeeeee-ccccEEeccCCceEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
+||+.+++.. +.+.+|.+.|+++.| +.+.. ++++|+-|.++++||.+. .++++.+. ....|.
T Consensus 85 vwDV~TGkv~---Rr~rgH~aqVNtV~f--NeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~--------- 149 (307)
T KOG0316|consen 85 VWDVNTGKVD---RRFRGHLAQVNTVRF--NEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS--------- 149 (307)
T ss_pred EEEcccCeee---eecccccceeeEEEe--cCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCcee---------
Confidence 9999987766 778899999999999 77766 599999999999999976 44555554 344555
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
++.+ .+..+++|+.||+++.||++.|+...-.-+| +|++++|+|+++..+.++-|+
T Consensus 150 --------------------Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 150 --------------------SIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred --------------------EEEe--cccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccc
Confidence 5555 4668899999999999999999877666555 799999999999999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceE--EEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC-eEEEEEcCCCCe
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIR--SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTES 446 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~fspdg~~ 446 (475)
++++.|-.+ ++.+..+++|...-. ..+++....++++|+.||.|.+||+-....+..+..+... +.++.++|.-..
T Consensus 206 tlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 206 TLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eeeecccch-hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 999999876 899999999876433 4456667789999999999999999998888887777776 899999998877
Q ss_pred EEEEEec
Q 011924 447 LFIGVWD 453 (475)
Q Consensus 447 l~~~~~D 453 (475)
++++..-
T Consensus 285 f~~A~~~ 291 (307)
T KOG0316|consen 285 FITATGH 291 (307)
T ss_pred eeEecCC
Confidence 7777543
No 64
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.7e-24 Score=215.53 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=168.7
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee--------eeeee-c
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL--------SKHFR-F 275 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~--------~~~~~-~ 275 (475)
||..|.|++|+..... ....+.+|.+.|.+++| +|+...+|++|+.|++|++|++.++.. +..+. |
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6778999999986543 24566789999999999 997434599999999999999976421 12233 5
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
...|. +++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++
T Consensus 125 ~~~V~-----------------------------sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 125 KKKIS-----------------------------IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred CCcEE-----------------------------EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 56666 9999998875 4688999999999999998887776 667899999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEE-----EEEccCCCEEEEEcCCC----eEEEEECCC-Cee
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS-----IRYTSDGRYMATAEPAD----FVHVYDVKS-GYE 424 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~-----l~~spdg~~la~~~~dg----~i~iwd~~~-~~~ 424 (475)
|+|+|++|++++.|++|+|||+++ +..+..+.+|.+.+.. ..|++++.+|++++.++ .|+|||+++ +.+
T Consensus 175 wspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 175 WNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred ECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 999999999999999999999988 7788889999876433 34568999999887764 799999985 444
Q ss_pred EEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEID--FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+..... +.+.+......++|.++++|+.|+++.
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 433322 223344444456688888999998874
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.9e-26 Score=222.34 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=191.7
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
+..+.| ..++|++++..|.|.+||+...........+..|...++++.| ++....+|++||.||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldf--h~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDF--HSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeee--ccCCccEEEecCCCceEEEEeeeccc
Confidence 334555 7899999999999999999875433323577889999999999 88888889999999999999999888
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ceEEEeec
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCG 345 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~ 345 (475)
.+.++. ....++ .++|+| .+..|+++.+.|.+.+||+|.. ++...+..
T Consensus 168 S~~t~~~nSESiR-----------------------------DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 168 SKSTFRSNSESIR-----------------------------DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred ccccccccchhhh-----------------------------ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 777766 566777 999999 7889999999999999999954 56678889
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecCCCceEEEEEccCCC-EEEEEcC--CCeEEEEECCC
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGR-YMATAEP--ADFVHVYDVKS 421 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~--dg~i~iwd~~~ 421 (475)
|.++|.|+.|||++.+||||+.|+.|+|||+... ..+..++. ...+|.+++|-|..+ +||+++. |-.|+|||++-
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 9999999999999999999999999999999642 22444444 245899999999775 5666653 66899999987
Q ss_pred CeeE-EEEeccCCCeEEEEEcC-CCCeEEEEEecCCcc
Q 011924 422 GYEK-EQEIDFFGEISGISFSP-DTESLFIGVWDRTYG 457 (475)
Q Consensus 422 ~~~~-~~~~~~~~~i~~l~fsp-dg~~l~~~~~D~~~~ 457 (475)
.+.+ ..+..|...++.++|.. |...|.+++.|+++-
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 7654 45667889999999965 556788899998764
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=204.08 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=186.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.-+.| +|++||+++.|.+..+|.+..........+..+|..+|..|.| ||+.++ +++|+.+..+++||+.++.
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w--SPDdry-LlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW--SPDDRY-LLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEE--CCCCCe-EEecCchHheeeccCCcch
Confidence 4666666 9999999999999999998766554445677889999999999 999997 8888889999999999999
Q ss_pred eeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 269 LSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 269 ~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+...+.+. ..+. +.+|.|||..+++|+.|+.+..||+. |..+...++-
T Consensus 303 ~~~~y~~~~~~S~~-----------------------------sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv 352 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVS-----------------------------SCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV 352 (519)
T ss_pred hhhhcccCcCCCcc-----------------------------eeEEccCCceeEecCCCCcEEEecCC-cchhhccccc
Confidence 98888754 4555 99999999999999999999999985 5555566653
Q ss_pred C-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----------------------------------------CceEEE
Q 011924 347 L-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNL----------------------------------------SESVAV 385 (475)
Q Consensus 347 ~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~----------------------------------------~~~~~~ 385 (475)
. ..|.+++.++||+++++...|..|++++.... ...++.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 3 46899999999999999988888888876431 111122
Q ss_pred EecCCCc--eEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcce
Q 011924 386 LKGNLGA--IRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGS 458 (475)
Q Consensus 386 ~~~~~~~--v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~~ 458 (475)
+.||... +-.-+|-- +..++|+|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. ..+|+|+.||+++-
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 2233221 22223432 44689999999999999999999999999999999999999965 56678899988853
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-25 Score=190.67 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=182.4
Q ss_pred cCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-ccccEEecc
Q 011924 207 FQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 207 ~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~s~ 283 (475)
..|.+.|.++..++ ...+.. ..-...+-.++| +++....+++++.||++++||+.. ..++..++ |...|.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s--~d~~D~LfdV~W--se~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~--- 108 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQS--YDTEDGLFDVAW--SENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY--- 108 (311)
T ss_pred cCceEEEEecCCCCCeEEEEe--eecccceeEeee--cCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE---
Confidence 36899999996444 333222 234456788999 888777899999999999999743 45666666 888888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVT 361 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~ 361 (475)
++.|++ .+..+++++-|++|++|+...++.++++.||...|+..+|+| .+++
T Consensus 109 --------------------------Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 109 --------------------------SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred --------------------------EeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe
Confidence 999999 677888889999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCe-eEEEEeccCCCeEEEE
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGIS 439 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~ 439 (475)
++++|.|+++++||++.+++.+. +..|...|.++.|+. +.++|++|+.|+.|++||+++-+ ++..+.+|.-.|+.+.
T Consensus 163 fas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK 241 (311)
T ss_pred EEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe
Confidence 99999999999999999887776 888998999999988 66799999999999999998754 4566778888999999
Q ss_pred EcCCC-CeEEEEEecCCcc
Q 011924 440 FSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 440 fspdg-~~l~~~~~D~~~~ 457 (475)
|||.. ..|++++.|-+++
T Consensus 242 ~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVR 260 (311)
T ss_pred cCcchhhHhhhccccceEE
Confidence 99964 5778889988774
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=9.6e-25 Score=218.99 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=212.4
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEc--CcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVK--DKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
..+..+..|+..++..... .+.|| ...|.++++. +.+|++|+.|.++++||..+ ..|.
T Consensus 225 s~~~tl~~~~~~~~~~i~~-~l~GH----------------~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s---g~C~ 284 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLILT-RLVGH----------------FGGVWGLAFPSGGDKLVSGSTDKTERVWDCST---GECT 284 (537)
T ss_pred CCCceeEEeecccceEEEe-eccCC----------------CCCceeEEEecCCCEEEEEecCCcEEeEecCC---CcEE
Confidence 4456677999877654332 23332 2468899995 99999999999999999765 3455
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
.++.+|.+.+.++.. . ..++++||.|.+|++|++++++.+..+. |..+|+
T Consensus 285 ~~l~gh~stv~~~~~--~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~------------------------ 335 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTI--D---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN------------------------ 335 (537)
T ss_pred EEecCCCceEEEEEc--c---CceEeeccCCceEEEEeccCcceEEEeccccccEE------------------------
Confidence 788899999999987 2 3358889999999999999999999999 999999
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 384 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~ 384 (475)
++..+ +.++++|+.|+.|.+||+.+++++..+++|..+|.++.+.+. ..+++|+.|++|++||+++..+++.
T Consensus 336 -----~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 336 -----CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred -----EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 88887 889999999999999999999999999999999999988665 8999999999999999988338999
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++.+|..-+..+.+ .+++|++++.|+.|++||..++.+++.+.. |.+.|..+++. ...+++++.|+++.
T Consensus 408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVK 477 (537)
T ss_pred hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeE
Confidence 99999988866665 477999999999999999999999999988 67889988886 46788888888775
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=221.04 Aligned_cols=235 Identities=16% Similarity=0.109 Sum_probs=190.2
Q ss_pred ccceeEEEEEE--cCcEEEEEecCceEEEEeCCCC----------------------------Cc---------------
Q 011924 187 FTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP----------------------------GV--------------- 221 (475)
Q Consensus 187 ~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~----------------------------~~--------------- 221 (475)
.+...|.+|.| +|+|||+||.||.|+||.+-.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 45568999999 9999999999999999987540 00
Q ss_pred eE--------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 222 SF--------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 222 ~~--------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.. ....+.+|.+.|..|.| |.++ +|+++|.|.+||+|++....++..|.|+.-|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW--SKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT------- 413 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW--SKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT------- 413 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccc--ccCC--eeEeccccccEEeecCCCcceeeEEecCCeeE-------
Confidence 00 01234568888888999 8776 69999999999999999999999999999999
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
|++|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|++++|.|+|++.+.|+
T Consensus 414 ----------------------cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 414 ----------------------CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred ----------------------EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEE
Confidence 999999 99999999999999999998766554444 347899999999999999999
Q ss_pred CCCeEEEEECCCCCceEEEEec--------CCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeEEEEeccC--CCe
Q 011924 367 QDKTCRIWDLRNLSESVAVLKG--------NLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEI 435 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~--------~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i 435 (475)
.+|.|++|+++. .+......- ....|+++.|.|.. ..|++.+.|..|+|||.++...+..+.++. +.-
T Consensus 471 ~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 471 FNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred eccEEEEEEccC-CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 999999999975 333322211 12379999999843 457777889999999998777777777654 344
Q ss_pred EEEEEcCCCCeEEEEEecCCc
Q 011924 436 SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~D~~~ 456 (475)
....|+.||++|++|+.|..+
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred eeeeEccCCCEEEEeecCceE
Confidence 577899999999999977544
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=202.98 Aligned_cols=237 Identities=19% Similarity=0.278 Sum_probs=201.9
Q ss_pred cccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 184 LEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 184 ~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
++..+...+++|.. ....+.+||.|..+.++|...+... .++.+|...|+.+.+ +|+... +++++.|..|++
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~--~~~~~~-v~~aSad~~i~v 287 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKF--HKDLDT-VITASADEIIRV 287 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEe--ccchhh-eeecCCcceEEe
Confidence 34444456888887 3489999999999999998876655 788899999999988 898875 899999999999
Q ss_pred EECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 262 FDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
|............ |..+|+ .+..+|.|.+|++++.|+.....|+++|..+
T Consensus 288 ws~~~~s~~~~~~~h~~~V~-----------------------------~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVT-----------------------------GLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred eccccccCccccccccccce-----------------------------eeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 9987655444443 889999 9999999999999999999999999999987
Q ss_pred EEeecC--CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 341 ASLCGH--LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 341 ~~l~~h--~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
...... .-.+++.+|||||.+|.+|..|+.|+|||+.+ +..+..+.+|.++|..++|+.+|-|||+++.|+.|++||
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 766532 23588999999999999999999999999977 668899999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 419 VKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 419 ~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++..+...++... ..++.++.|.+.|.+|++++.|-.+
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9987766666542 3479999999999999999777544
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.8e-25 Score=221.84 Aligned_cols=241 Identities=18% Similarity=0.201 Sum_probs=201.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCC--CCc-------------eEEEeeecCCCCceeEEEEEeCCCCCeEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDR--PGV-------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFT 251 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~--~~~-------------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~ 251 (475)
...|+|+.| +|.+||+|+.|+.|.+|.... .+. -.+..++.+|.+.|..+.| +|++.+ ++
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~~-lv 145 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDSL-LV 145 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc--CCCccE-EE
Confidence 347999999 999999999999999999772 111 1245677889999999999 999885 99
Q ss_pred EEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+++.|++|.+|+..+++.+..+. |...|. .+.|.|-|++||+-++|++|+
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VK-----------------------------Gvs~DP~Gky~ASqsdDrtik 196 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVK-----------------------------GVSWDPIGKYFASQSDDRTLK 196 (942)
T ss_pred EecccceEEEEccccceeeeeeeccccccc-----------------------------ceEECCccCeeeeecCCceEE
Confidence 99999999999999998888888 888999 999999999999999999999
Q ss_pred EEECCCCceEEEeecC------CCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCCceEEEEecCCCceEEEEEcc
Q 011924 331 LVDSMTGKTIASLCGH------LDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h------~~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 400 (475)
+|++.+-...+.+.++ ......+.|||||.+|++... -.++.|.+-.+ .+.-..+-+|.+++.+++|+|
T Consensus 197 vwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 197 VWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred EEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeCh
Confidence 9997766666666543 245788999999999998753 34788888744 777888999999999999998
Q ss_pred -----CCC------------EEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 401 -----DGR------------YMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 401 -----dg~------------~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
..+ .+|+|+.|+.|.||.....+++..+.. ....|.+++|+|||..|++++.||++. ++.|
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~-~i~F 354 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA-LIHF 354 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE-EEEc
Confidence 111 688999999999999987777666554 346899999999999999999999984 4444
Q ss_pred E
Q 011924 463 G 463 (475)
Q Consensus 463 ~ 463 (475)
.
T Consensus 355 e 355 (942)
T KOG0973|consen 355 E 355 (942)
T ss_pred c
Confidence 3
No 72
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.8e-25 Score=193.61 Aligned_cols=206 Identities=25% Similarity=0.427 Sum_probs=172.2
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCC---------ceEEE---eeecCCCCceeEEEEEeCCCCCeEEEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG---------VSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTA 252 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~---------~~~~~---~~~~~~~~~v~~l~~~~s~~g~~~l~s 252 (475)
++..|.+|.+ .|+++++|+.||.|.+||+.+.. ...|. .....|.-.|..+.|+....| +|.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mFts 119 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MFTS 119 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--eeec
Confidence 4457888888 79999999999999999997644 11121 122346667888999655555 7999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCCCcE
Q 011924 253 SNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDNPDG 329 (475)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~dg~i 329 (475)
+|-|.++++||..+-+....|+.+..|. +-++|| ...++|+|..+..|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VY-----------------------------shamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVY-----------------------------SHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceee-----------------------------hhhcChhhhcceEEEEecCCCcE
Confidence 9999999999999999999999888888 778888 35688889999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEe--------------cCCCceE
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLK--------------GNLGAIR 394 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~--------------~~~~~v~ 394 (475)
++.|+.+|...++|.||.+.|.++.|+| ..-.||||+.||+||+||+|....+...+. .|.+.|.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 9999999999999999999999999999 455788999999999999987645544443 4567899
Q ss_pred EEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 395 SIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
+++|+.+|+++++.+.|..+++|+..+|..
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcc
Confidence 999999999999999999999999988753
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.5e-26 Score=217.63 Aligned_cols=226 Identities=19% Similarity=0.252 Sum_probs=199.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCce---EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC--eeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVS---FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH 272 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--~~~~~ 272 (475)
.+++|++||.||.|++|++...... .+...+..|..-|+.+.. ..+|+. |+++|.|-+|++|+.... -+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL--~~~~~t-lIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL--CGNGKT-LISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh--hcCCCc-eEEecCCceEEEeecccCcchhHhh
Confidence 6778999999999999998765542 234567789999999988 788876 999999999999999876 45556
Q ss_pred ee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE-CCCCcEEEEEeCCCcEEEEECCCCc--eEE-------
Q 011924 273 FR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGK--TIA------- 341 (475)
Q Consensus 273 ~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~-sp~g~~l~~~~~dg~i~iwd~~~~~--~~~------- 341 (475)
+. |...|. |+++ -++..++|+||-|+.|++||+.+|. .++
T Consensus 113 ir~H~DYVk-----------------------------cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 113 IRTHKDYVK-----------------------------CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred hhcccchhe-----------------------------eeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 65 888888 9998 7899999999999999999999872 232
Q ss_pred -Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 342 -SLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 342 -~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.+. |+...|++++.++.|..|++|+..+.+++||.++ .+.+..+.+|...|+.+..++||+.+++|+.||+|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 233 7889999999999999999999999999999998 7778888899999999999999999999999999999999
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
....++.++..|...|+++.-+|+-..+.+|+.|+.+
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 9999999999999999999999999999999999865
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1e-25 Score=193.47 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=221.8
Q ss_pred eeEEEEEE-----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 190 TQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 190 ~~v~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
-||..|++ +|-+|++++.||.--+.+-+++... -++.+|.+.|+...+ ..+... .++++.|-+.++||.
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---gtfeghkgavw~~~l--~~na~~-aasaaadftakvw~a 88 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---GTFEGHKGAVWSATL--NKNATR-AASAAADFTAKVWDA 88 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE---EeeeccCcceeeeec--Cchhhh-hhhhcccchhhhhhh
Confidence 36777777 7889999999998877666655554 788899999999988 666654 889999999999999
Q ss_pred CCCeeeeeeeccc---cEEeccCCceEE------EEEEeecccceEEE-----EeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 265 GKYQLSKHFRFPW---PVNVSSSYCIIL------LCRLLNFMTEKVII-----CLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 265 ~~~~~~~~~~~~~---~v~~s~~~~~l~------~~~v~d~~~~~~~~-----~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
-++..+..|.|.. .+.|+.+...|. .++|+|+...+..+ +...|..+-|....+.+++++.+++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 9999998888654 455887766663 57899987765433 233677888888888899989999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+||.++|+.+++|. ...+|.++..+++|++|.++ ..+.|++||..+ -.+++.+... ..|.+..++|+..++++|+.
T Consensus 169 LWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks-f~~lKs~k~P-~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS-FGLLKSYKMP-CNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred EEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccc-ccceeeccCc-cccccccccCCCceEEecCc
Confidence 99999999999998 56789999999999877666 557899999977 5666666543 46889999999999999999
Q ss_pred CCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecce
Q 011924 411 ADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNY 468 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~ 468 (475)
|..++.||..+|..+..+ .+|.++|.++.|||+|..-++|+.||++ .|+++.-+..+
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi-rlWQt~~~~~~ 302 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI-RLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceE-EEEEecCCCch
Confidence 999999999999998885 8899999999999999999999999998 46666555544
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=197.20 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=197.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+.+.+ +...+++++.+-.|+||....... ......|.++|+.+.. +|+|.+ |+++++|++....|++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---~~~~~~h~~~V~~ls~--h~tgeY-llsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---PTSSRPHEEPVTGLSL--HPTGEY-LLSASNDGTWAFSDISSG 335 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeeccccccC---ccccccccccceeeee--ccCCcE-EEEecCCceEEEEEccCC
Confidence 35777777 667888999999999999876553 3566789999999999 999997 999999999999999999
Q ss_pred eeeeeeecc-c--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFRFP-W--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~~~-~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.++....+. . .++ +.+|+|||.+|.+|..|+.++|||+.++..+..|.
T Consensus 336 ~~lt~vs~~~s~v~~t-----------------------------s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYT-----------------------------SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred cEEEEEeeccccceeE-----------------------------EeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 887766643 2 244 89999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEcCCCeEEEEECC--C
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVK--S 421 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~~--~ 421 (475)
+|.++|.+++|+.+|-+||+++.|+.|++||+|. .+...++.... ..+.++.|.+.|++|+.++.+=+|++++-. +
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 9999999999999999999999999999999998 44555555432 368999999999999999887677777633 4
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..++.++..|.|..+++.|....+++++++.|..+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l 500 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAIL 500 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhhe
Confidence 55677777888999999999999999999999763
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=6.5e-24 Score=191.67 Aligned_cols=245 Identities=12% Similarity=0.132 Sum_probs=200.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.+++. +.+++++||.|..-.+|++.+.... ....+|+..|.++.| +.+|.+ |++|..+|.|+||...++.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~F--shdgtl-LATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSF--SHDGTL-LATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEE--ccCceE-EEecCCCccEEEEEcccCc
Confidence 3555555 7789999999999999999987744 566789999999999 999985 9999999999999999988
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
....+. ....+. -+.|+|.+..|++|+.||.+.+|.+.++...+.+.||.
T Consensus 140 ~~~~~~~e~~die-----------------------------Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 140 EQWKLDQEVEDIE-----------------------------WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred eEEEeecccCceE-----------------------------EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 877775 455566 88999999999999999999999999988899999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---------------------------------------
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------------------------------- 388 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--------------------------------------- 388 (475)
.++++=.|.|+|+.++++..||+|++|+..+ ++++..+..
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999999999999999999999976 565555431
Q ss_pred ------------CCCceEEEEEcc---CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 389 ------------NLGAIRSIRYTS---DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 389 ------------~~~~v~~l~~sp---dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+...+.++.+.| .=.+.|+|+-||+|.|||+.+.+ ++.+..|...|..+.|-+ ..+|++++.|
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccC
Confidence 000112233333 33567899999999999998764 445556888899999999 7889888666
Q ss_pred CC-------cceEEEEEeecceeeecc
Q 011924 454 RT-------YGSLLEYGRCRNYSYLDS 473 (475)
Q Consensus 454 ~~-------~~~ll~~~~~~~~~~l~~ 473 (475)
|+ .|.++..+++|++.-|+-
T Consensus 348 g~v~~wDaRtG~l~~~y~GH~~~Il~f 374 (399)
T KOG0296|consen 348 GKVRQWDARTGQLKFTYTGHQMGILDF 374 (399)
T ss_pred ceEEeeeccccceEEEEecCchheeEE
Confidence 55 568899999999877653
No 77
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=7.8e-24 Score=186.65 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=205.2
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
|.+++..+.. ..|..|.+|+.... ....+.+.| +...|..+.+ +++.|+++|.|.+|+.|
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkg----------------HsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKG----------------HSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred ECCCCCeEeecCCcceEEEEecccc-ccceeeecc----------------ccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 5554443333 24688999995433 233333333 3357999999 99999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc---ccEEeccCCceE---
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNVSSSYCII--- 288 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~s~~~~~l--- 288 (475)
|..+++.. +....|.+-|+++.. +.-|..++.+++.|+++++||+++...++++... ..|.|...+..+
T Consensus 118 D~~tG~~~---rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 118 DAETGKRI---RKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ecccceee---ehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeec
Confidence 99886655 566789999999986 8888888999999999999999988888777533 344555444333
Q ss_pred ---EEEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECC----CCceEEEeecCC----CCeEEE
Q 011924 289 ---LLCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHL----DFSFAS 353 (475)
Q Consensus 289 ---~~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~----~~~~~~~l~~h~----~~v~~~ 353 (475)
..+++||+..+...-... .|+++..+|+|..+.+-+-|.++++||++ ..+++..+.+|. -....+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 368999998877665444 78999999999999999999999999998 334577887754 345678
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
+|+|+++.+.+|+.|+.+.+||... ...+..+.+|.+.|.++.|+|...+|.+++.|.+|.+=
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eccCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 9999999999999999999999954 78899999999999999999999999999999998764
No 78
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-23 Score=186.47 Aligned_cols=263 Identities=15% Similarity=0.121 Sum_probs=207.3
Q ss_pred cceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~ 210 (475)
+..+.|.+.+..|.. ..++++++|+.........++ +.+++++.+| +...+++|+.||.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-------------------~~~plL~c~F~d~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-------------------HGAPLLDCAFADESTIVTGGLDGQ 76 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-------------------cCCceeeeeccCCceEEEeccCce
Confidence 344556655555554 578999999976654333332 3468999999 8889999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILL 290 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~ 290 (475)
|+.+|+...... ....|..++.+|.. ++.... +++||+|++|++||.+.......+..+..|.
T Consensus 77 vr~~Dln~~~~~----~igth~~~i~ci~~--~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy---------- 139 (323)
T KOG1036|consen 77 VRRYDLNTGNED----QIGTHDEGIRCIEY--SYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQGKKVY---------- 139 (323)
T ss_pred EEEEEecCCcce----eeccCCCceEEEEe--eccCCe-EEEcccCccEEEEeccccccccccccCceEE----------
Confidence 999999876533 45678999999998 665554 9999999999999998866666666666777
Q ss_pred EEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL--CGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
++.. .|+.|++|+.+..+.+||+++....... ..-.-.++|+++-|++.-++.++-+
T Consensus 140 -------------------~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 140 -------------------CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred -------------------EEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence 5554 5788999999999999999976543322 2344578999999988889999999
Q ss_pred CeEEEEECCCC---CceEEEEecCC---------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 369 KTCRIWDLRNL---SESVAVLKGNL---------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 369 g~v~iwd~~~~---~~~~~~~~~~~---------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|.|.+=.+... .+....++.|. -+|.+++|+|-...||+|+.||.|.+||+.+.+.+.++......|.
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 99887666442 12344455553 2799999999888999999999999999999999999988888999
Q ss_pred EEEEcCCCCeEEEEEe
Q 011924 437 GISFSPDTESLFIGVW 452 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~ 452 (475)
.++|+.+|..||+|+.
T Consensus 279 slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeccCCCeEEEEec
Confidence 9999999999999864
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.4e-25 Score=213.11 Aligned_cols=281 Identities=14% Similarity=0.155 Sum_probs=219.2
Q ss_pred CCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccc--cceeEEEEEE--cCcEEEEEecCceEEEEe
Q 011924 141 SKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGF--TQTQVSTLAV--KDKLLVAGGFQGELICKH 215 (475)
Q Consensus 141 ~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~--~~~~lvsg~~dg~i~vw~ 215 (475)
.+..+|+. .|+.|+.|+........- .| .+... +..-|..++. +++.|++++.|-+|++|+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s-------~~-------~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPS-------TP-------YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcc-------cc-------hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 33446664 468899998654332110 00 01111 1124666655 788999999999999999
Q ss_pred CCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeeeccccEEeccCCceEEEEEE
Q 011924 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFRFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~v~~s~~~~~l~~~~v 293 (475)
..... .+|..++..|...|.|+++ -...+.++++|+-|+.|.+||++++. .+..+... +++-.+
T Consensus 102 ~~~~~-~~c~stir~H~DYVkcla~--~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~---------- 167 (735)
T KOG0308|consen 102 AHKDN-TFCMSTIRTHKDYVKCLAY--IAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLG---------- 167 (735)
T ss_pred cccCc-chhHhhhhcccchheeeee--cccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCC----------
Confidence 98766 7888999999999999998 34444579999999999999999873 33333311 111000
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
..+...|++++.++.|..+++|+..+.+++||.++++.+..|.||.+.|.++..++||+.++++|.||+|++
T Consensus 168 --------sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 168 --------SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred --------CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 012234559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
||+.. .+++.++..|...|+++..+|+=.++++|+.|+.|..-|+++......+.....+|..+..+...+-+.++.+|
T Consensus 240 WdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 240 WDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc
Confidence 99977 88999999999999999999999999999999999999999865444455556788888888666667888888
Q ss_pred CCcce
Q 011924 454 RTYGS 458 (475)
Q Consensus 454 ~~~~~ 458 (475)
+.+..
T Consensus 319 s~I~r 323 (735)
T KOG0308|consen 319 SSIKR 323 (735)
T ss_pred cccee
Confidence 87753
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=176.01 Aligned_cols=233 Identities=21% Similarity=0.318 Sum_probs=188.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCC------CC------CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLD------RP------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~------~~------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
.|.+++| .|.+.++|+...++++-... .. .+....+...+|.+.|.|.+| +|.|.. +++|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~gel-iatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGEL-IATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccCe-EEecCCC
Confidence 5778888 88999999999998875321 11 112234556789999999999 999985 9999999
Q ss_pred CeEEEEECCCCe--ee---eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC----CCcEEEEEe-C
Q 011924 257 CGVRDFDMGKYQ--LS---KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP----DGKLLIIVG-D 325 (475)
Q Consensus 257 g~v~iwd~~~~~--~~---~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp----~g~~l~~~~-~ 325 (475)
.+|++.-.+... .. ..|. |.+.|. .++|-. .|.+|++++ .
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtir-----------------------------dl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIR-----------------------------DLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCcee-----------------------------eeEEecCCCcCceEEEecCCC
Confidence 999998664422 22 1333 666677 778743 456677664 5
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-------CCCceEEEEE
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-------NLGAIRSIRY 398 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~ 398 (475)
|..|++-|...|+..+.+.||.+.|.++ ++-++-.+++|++|.+||+||+|- ..++.++.. ..++|.+++.
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEE
Confidence 6778888989999999999999999876 333789999999999999999987 667776643 2258999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|.|++|++|-.|....+||++.+..++.+..|...|.++.|||...||++++.|..++
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999998775
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=200.89 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=188.4
Q ss_pred eeEEEEEEc----CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 190 TQVSTLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 190 ~~v~~l~~~----~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
..|++++|. ..+.++++ -.+.+++....... +++..-...+.++.| ..+|+ ++++|...|.|++||+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~---k~~srFk~~v~s~~f--R~DG~-LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR---KTFSRFKDVVYSVDF--RSDGR-LLAAGDESGHVKVFDMK 98 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhh---hhHHhhccceeEEEe--ecCCe-EEEccCCcCcEEEeccc
Confidence 468888882 24555554 45777876654433 344445667899999 88998 49999999999999987
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+...++.+. |..|+. .+.|+| ++..|++|++|+.+++||+.+......+
T Consensus 99 ~r~iLR~~~ah~apv~-----------------------------~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVH-----------------------------VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred cHHHHHHHhhccCcee-----------------------------EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 766677776 888999 889999 5566778888999999999988876689
Q ss_pred ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 344 CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 344 ~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+|+++|+|.+|+| ++..++||+.||+||+||+|.....+.++. |..+|..+.|-|.|..+|+|+.. .|+|||+.+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G 227 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG 227 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC
Confidence 99999999999999 677999999999999999998556666665 67799999999999999999865 6999999865
Q ss_pred ee-EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 423 YE-KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 423 ~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
.. +.....|...|+|+.+..++..|++|+-|+.++.+
T Consensus 228 ~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 228 GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred ceehhhhhcccceEEEEEeecCCceEeecccccceEEE
Confidence 44 44444599999999999999999999999988644
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.1e-23 Score=181.91 Aligned_cols=232 Identities=18% Similarity=0.189 Sum_probs=192.1
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC--CCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~ 264 (475)
...|.+|.+ +|.+|++++.|..+++||...+... .+...++-.+..+.|. +++. . ++.++. |.+||..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Ft-h~~~-~-~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---KTINSKKYGVDLACFT-HHSN-T-VIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---eEeecccccccEEEEe-cCCc-e-EEEccCCCCCceEEEEe
Confidence 457999999 8999999999999999999876655 4555555567777774 3333 3 444444 889999999
Q ss_pred CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.+.+.++.|. |...|+ .++.+|-+..+++++.|++|++||++..++...+
T Consensus 88 ~dNkylRYF~GH~~~V~-----------------------------sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVN-----------------------------SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred ecCceEEEcCCCCceEE-----------------------------EEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 9999999999 899999 9999999999999999999999999988887766
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecC---CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~---~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..-.. ..++|.|.|-++|+++....|++||+|.. ..|..++.-. ....+.+.|||||++|+.+...+.+++.|.
T Consensus 139 ~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 53333 34799999999999998889999999975 3455555433 567889999999999999999999999999
Q ss_pred CCCeeEEEEeccCCC---eEEEEEcCCCCeEEEEEecCCcc
Q 011924 420 KSGYEKEQEIDFFGE---ISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~---i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
-+|..+..+..+... .....|+||++++++|+.||++.
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 999988887766532 26788999999999999998874
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=187.57 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=170.5
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
+.+.+|.+.+..|+| +.+|.. +++|+.|+++.+|+++..+...... |...|.
T Consensus 14 r~~~~~~~~v~Sv~w--n~~g~~-lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd---------------------- 68 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW--NCDGTK-LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD---------------------- 68 (313)
T ss_pred HHhhhhhhcceEEEE--cccCce-eeecccCCceEEEEecchhhhhhhcccCCCcchh----------------------
Confidence 344578888999999 999997 9999999999999998775544333 555666
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS- 380 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~- 380 (475)
.++|+| ...+|++++.|..|++||++.++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++..
T Consensus 69 -------ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 69 -------QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred -------hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 788888 77899999999999999999999999888655544 47899999999999999999999876521
Q ss_pred ---------------------------------------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 381 ---------------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 381 ---------------------------------------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+++..+++|.....++.|+|+|+++|+|+.|..+.+||+..
T Consensus 141 ~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 35566677888888999999999999999999999999999
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.-+.+.+..+.-+|+.++||.||++||+|+.|..+
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred hhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 88999999999999999999999999999999765
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=7.6e-25 Score=194.56 Aligned_cols=232 Identities=13% Similarity=0.157 Sum_probs=196.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE-----eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS-----RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+-|-.| +|++|++|+.||-|-+|+..+++...-. ..+.-+..+|.|+.| |.+... +++|+.||.|++|.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F--SRDsEM-lAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF--SRDSEM-LASGSQDGKIKVWR 291 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee--cccHHH-hhccCcCCcEEEEE
Confidence 3444444 9999999999999999998876633111 122335678999999 999875 99999999999999
Q ss_pred CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 264 MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
+++|++++.|. |...|+ |+.||.|+..+++++.|.++++--+.+|+++.
T Consensus 292 i~tG~ClRrFdrAHtkGvt-----------------------------~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVT-----------------------------CLSFSRDNSQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred EecchHHHHhhhhhccCee-----------------------------EEEEccCcchhhcccccceEEEeccccchhHH
Confidence 99999999987 888899 99999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC--CCceEEEEEccC-CCEEEEEcCCCeEEEEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSD-GRYMATAEPADFVHVYD 418 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spd-g~~la~~~~dg~i~iwd 418 (475)
.+.||...|....|.++|+.+++++.||+|+||+..+ ..++.+++.. .-+|.++..-|. -.+++++...++|.|.+
T Consensus 343 EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred HhcCccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 9999999999999999999999999999999999977 7788887653 357888887774 46888888889999999
Q ss_pred CCCCeeEEEEec---cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 419 VKSGYEKEQEID---FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 419 ~~~~~~~~~~~~---~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+. |..++.+.. ..|...+.+.||.|.++.+.+.|+.+
T Consensus 422 ~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vl 461 (508)
T KOG0275|consen 422 MQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVL 461 (508)
T ss_pred cc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEE
Confidence 75 566666654 23667788899999999999998754
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=4.7e-23 Score=201.40 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=207.4
Q ss_pred CCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEE
Q 011924 173 VAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFT 251 (475)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~ 251 (475)
.+|.+...+.+-...++..|.++++ +.+.++..+..+.|++|+..+.+ |.++.... .+.+..| .|.+++ ++
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k---ciRTi~~~--y~l~~~F--vpgd~~-Iv 428 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK---CIRTITCG--YILASKF--VPGDRY-IV 428 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc---eeEEeccc--cEEEEEe--cCCCce-EE
Confidence 3344445555556667888999999 55666666678999999988644 34554443 5666666 888876 99
Q ss_pred EEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+|...|.+.+||+....++.+++ |.+.+- .++.+||++.+++|+.|.+|+
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-----------------------------si~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIW-----------------------------SISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhcccccee-----------------------------eeeecCCCCceEEecCCcEEE
Confidence 99999999999999988887777 888888 999999999999999999999
Q ss_pred EEECC-----CCceEEEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 331 LVDSM-----TGKTIASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 331 iwd~~-----~~~~~~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
+||.. .|.....+.- -.+.|.|+.+||||++||.+--|.||+||-+.+ -+-...+-||.-||.++..
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEec
Confidence 99974 1222111211 356799999999999999999999999999976 6777888999999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
|||++.++|||.|..|+||-+.=|.+.+.+..|...|.++.|-|....+++++.|+.++.+
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 9999999999999999999999999999999999999999999999999999999988755
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.3e-24 Score=182.53 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=193.4
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHF 273 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (475)
|.+.|++|++++.|+.|+|+.++.++.......+.+|.++|.-++|. +| -|. +|++++.||.|.||.-+.++..+..
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~-iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGT-ILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCc-EeeEeecCceEEEEecCCCchhhhh
Confidence 44489999999999999999999888755567889999999999997 55 455 6999999999999998887544332
Q ss_pred e---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCC-c--eEEEeec
Q 011924 274 R---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTG-K--TIASLCG 345 (475)
Q Consensus 274 ~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~-~--~~~~l~~ 345 (475)
. |...|+ +++|.| -|-+|++++.||.|.|.+.+.. . .......
T Consensus 97 e~~~h~~SVN-----------------------------sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 97 EHAAHSASVN-----------------------------SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred hhhhhcccce-----------------------------eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 2 788899 999998 5778999999999999988743 2 2233457
Q ss_pred CCCCeEEEEEecC---C-----------CEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCceEEEEEccCC----CEEE
Q 011924 346 HLDFSFASAWHPN---G-----------VTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDG----RYMA 406 (475)
Q Consensus 346 h~~~v~~~~~sp~---g-----------~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~spdg----~~la 406 (475)
|.-.|.+++|.|. | +.|++|+-|..|+||+..+.. ..-.++.+|.+.|+.++|.|.- ..||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999995 5 579999999999999997631 3445588999999999999954 4899
Q ss_pred EEcCCCeEEEEECCCC---eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 407 TAEPADFVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+++.||+|.||-.... .....+..+...+..++||+.|+.|++++.|..+.-+-+-..+.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9999999999986532 12223344667899999999999999999998886555544443
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=186.62 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=183.1
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 226 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~ 226 (475)
.+..-.+|+.+++...-.+. +.+-|.+++| +.++|++||.+.-++|++++.++-. ..
T Consensus 79 adftakvw~a~tgdelhsf~-------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p~ 137 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFE-------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--PK 137 (334)
T ss_pred ccchhhhhhhhhhhhhhhhh-------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC--ch
Confidence 45666777777764322111 2345778888 8899999999999999999887654 35
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
-..+|.+.|..+.| +...+. +++++.|++||+||.++++.++.+..+.+|+
T Consensus 138 E~~ghtg~Ir~v~w--c~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-------------------------- 188 (334)
T KOG0278|consen 138 EISGHTGGIRTVLW--CHEDKC-ILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-------------------------- 188 (334)
T ss_pred hhcCCCCcceeEEE--eccCce-EEeeccCCceEEEEeccCcEEEEEecCCCCc--------------------------
Confidence 66789999999999 666665 7777899999999999999999999999999
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
++.++++|++|.++ ..+.|..||..+-.++..++ -.-.|.+...+|+...+++|+.|..++.||..+ +..+..+
T Consensus 189 ---SlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~ 262 (334)
T KOG0278|consen 189 ---SLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSY 262 (334)
T ss_pred ---ceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC-Cceeeec
Confidence 99999999988776 45679999999888887776 355688999999999999999999999999977 6666664
Q ss_pred -ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 387 -KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 387 -~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
++|.++|.+++|+|+|...|+|+.||+|+||-+..++
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 8999999999999999999999999999999976554
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=198.76 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=183.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCce--EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.|+++++ .|..|++|+.|..|++||+...... ....+.......|+++.| ++.|.. |++.+.....+|+|-..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~-iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQ-ILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCe-EEEEecCcceeEEccCC
Confidence 6888888 8999999999999999998654422 112344556667999999 999997 55555677899999876
Q ss_pred CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCc-eEEEee
Q 011924 267 YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK-TIASLC 344 (475)
Q Consensus 267 ~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~ 344 (475)
.......+....|. |+.. ...+.-.++|.+|+| +...+++++.||+++|||+...+ .+.+++
T Consensus 246 ~~~~e~~KGDQYI~--------------Dm~n--TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIR--------------DMYN--TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred ceeeeeeccchhhh--------------hhhc--cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 66554433222221 0000 000111233889999 55678999999999999998543 444443
Q ss_pred -----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCC--ceEEEEEccCCCEEEEEcCCCeEE
Q 011924 345 -----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 345 -----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~--~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
+-.-++..|+|+|+|++||+|+.||.|.+|+.++... ....-.+|.. .|+++.||+||++|++-+.|++++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2345789999999999999999999999999865322 2333455665 899999999999999999999999
Q ss_pred EEECCCCe-eEEEEeccC--CCeEEEEEcCCCCeEEEEEe--cCCcceEEEEEeecce
Q 011924 416 VYDVKSGY-EKEQEIDFF--GEISGISFSPDTESLFIGVW--DRTYGSLLEYGRCRNY 468 (475)
Q Consensus 416 iwd~~~~~-~~~~~~~~~--~~i~~l~fspdg~~l~~~~~--D~~~~~ll~~~~~~~~ 468 (475)
+||+++.+ ++....+.. -+-+.++|||+.+.|++|.. .+.....|.|....++
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence 99998754 333333333 35678999999999998843 2222335555554443
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.2e-24 Score=189.88 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=232.7
Q ss_pred eeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceE
Q 011924 135 NLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 211 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i 211 (475)
...|+++...+...+ ++-+-+|+..+++..+-+..... .++ .....+|.|++| +..+|++|+.||+|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq--------d~f--MMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ--------DNF--MMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh--------cce--eecccceEEEeecccHHHhhccCcCCcE
Confidence 355888888877754 68899999999987654433210 000 112347999999 88999999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILL 290 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~ 290 (475)
++|.+.++.-. .++...|...|+++.| |.++.. +++++.|.++|+.-+..|++++.|+ |...|+
T Consensus 288 KvWri~tG~Cl--RrFdrAHtkGvt~l~F--SrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn---------- 352 (508)
T KOG0275|consen 288 KVWRIETGQCL--RRFDRAHTKGVTCLSF--SRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN---------- 352 (508)
T ss_pred EEEEEecchHH--HHhhhhhccCeeEEEE--ccCcch-hhcccccceEEEeccccchhHHHhcCcccccc----------
Confidence 99999876544 2344578999999999 999986 8999999999999999999999998 888888
Q ss_pred EEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEec-CCCEEEEEeC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHP-NGVTFATGNQ 367 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp-~g~~l~t~s~ 367 (475)
.+.|.++|..+++++.||+|++|+..++.++.+++. ...+|.++-.-| +...++.++.
T Consensus 353 -------------------~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 353 -------------------EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred -------------------ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 999999999999999999999999999999988874 345788888778 6778999999
Q ss_pred CCeEEEEECCCCCceEEEEecC---CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~---~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
..+|.|.++. ++.++.+... .+...+.+.||.|.++++.+.|+.++.|.+.+|.....+..|...+.+++-+|..
T Consensus 414 sntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq 491 (508)
T KOG0275|consen 414 SNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ 491 (508)
T ss_pred CCeEEEEecc--ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc
Confidence 9999999995 7788887642 3456678899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
+.|++-+.|+.++
T Consensus 492 NllAsYsEDgllK 504 (508)
T KOG0275|consen 492 NLLASYSEDGLLK 504 (508)
T ss_pred chhhhhcccchhh
Confidence 9999999998764
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-23 Score=184.14 Aligned_cols=233 Identities=17% Similarity=0.251 Sum_probs=191.2
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
+..+|+++|+++.++|+|+.|-+|++||+...... .....|.+.|+++.|+.....+ .|++|+.||.|.+|+....
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql---g~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL---GILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccchhhh---cceeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCCe
Confidence 45689999999999999999999999999875544 5566789999999994222222 4999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
.++..++ |...|+ .++++|.|++.++.+.|+.+++|++-.|+.-..+.-
T Consensus 118 ~~~~slK~H~~~Vt-----------------------------~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L- 167 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVT-----------------------------DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL- 167 (362)
T ss_pred EEeeeecccccccc-----------------------------eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-
Confidence 9999988 888899 999999999999999999999999998876554442
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
......+.|+|.|.+++.+.+++ |-||.+.+ .+....+... ..+.++.|- ++..|++|..++.|.+||..++.+..
T Consensus 168 ~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~-A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 168 KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDN-ASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred CCcceeeEEcCCCCEEEEEeccE-EEEEeccc-HhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccce
Confidence 22334499999999999998875 99999876 3444443332 345566664 56789999999999999999899999
Q ss_pred EEeccCCCeEEEEE--cCCCCeEEEEEecCCcce
Q 011924 427 QEIDFFGEISGISF--SPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 427 ~~~~~~~~i~~l~f--spdg~~l~~~~~D~~~~~ 458 (475)
.+..|..+|-++.+ .|++.+|++++.||.+..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 99999999999984 567899999999998863
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=200.70 Aligned_cols=257 Identities=15% Similarity=0.234 Sum_probs=201.9
Q ss_pred EecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 138 WATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 138 ~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
|.+...+|++. -+..|++|+.... ...+-.+.|| ..+|.+++| .|..++++++|+.|++
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH----------------~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGH----------------RKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecC-cceehhhhcc----------------hhhhhhhhccccCCeeeeeecceeeee
Confidence 66655566664 4688999987652 2232223332 236888888 8999999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----ccccEEeccCCceEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNVSSSYCIIL 289 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~s~~~~~l~ 289 (475)
||++++....+. .....+.++.+ +|++..+|++|+.|+.|+.||+++++.++.+. ....+.|-+.+....
T Consensus 285 wDtETG~~~~~f----~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 285 WDTETGQVLSRF----HLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred eccccceEEEEE----ecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 999987755322 23456789999 99997779999999999999999999877655 344555777776663
Q ss_pred ------EEEEeecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCC--CCeEEE
Q 011924 290 ------LCRLLNFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHL--DFSFAS 353 (475)
Q Consensus 290 ------~~~v~d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~--~~v~~~ 353 (475)
.++||+...+-.++-+. .+.|+..+|+++.+++-+-+..|.++.+... .....++||. ++...+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 68999888776665433 5668899999999999889999999886532 2234567775 566778
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEE
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYD 418 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd 418 (475)
.|||||.+|++|+.||.|.+||.++ .+.+..+++|.+++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999976 78899999999999999999954 5899999999999996
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=209.87 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=199.6
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
....+.++.+..+++++|+.++.|.+|+....... ...+.+|.+.|.++++ .. +...+++|+.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i--~~~l~GH~g~V~~l~~--~~-~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI--LTRLVGHFGGVWGLAF--PS-GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEE--EeeccCCCCCceeEEE--ec-CCCEEEEEecCCcEEeEecCCC
Confidence 44568888888999999999999999998764433 2338899999999999 43 3445999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
++...+. |...+. ++.. ...++++|+.|.+|++|++.+++.+..+.+|
T Consensus 282 ~C~~~l~gh~stv~-----------------------------~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVR-----------------------------CLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred cEEEEecCCCceEE-----------------------------EEEc--cCceEeeccCCceEEEEeccCcceEEEeccc
Confidence 9999998 787777 5554 4567788899999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEK 425 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~ 425 (475)
.++|+++..+ +.++++|+.|++|+|||++. .++++.+.+|.+.|.++.+.+. .++++|+.|+.|++||+.+. +++
T Consensus 331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred cccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence 9999999996 88999999999999999986 8999999999999999988765 79999999999999999999 899
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..|.+-+.++.+ .+++|++++.|+++.
T Consensus 407 ~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hhhcCCccccccccc--ccceeEeccccccEE
Confidence 999999988877666 567999999998765
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-21 Score=194.01 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=196.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+++.. -=..++.|..+|+|.++++...+... .+....+.|+.++| ..+|..++++|+..|.+.+||++..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~---sFk~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM---SFKQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEE---EEEccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCC
Confidence 35555555 23567788888888888888766553 23333588999999 9999998999988999999999876
Q ss_pred eeeeeee--c-----------cccEEec--------------cCC-------------------------ceEE------
Q 011924 268 QLSKHFR--F-----------PWPVNVS--------------SSY-------------------------CIIL------ 289 (475)
Q Consensus 268 ~~~~~~~--~-----------~~~v~~s--------------~~~-------------------------~~l~------ 289 (475)
+.+.... | ..||.++ ++| ..+.
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 6543322 1 1122111 000 0000
Q ss_pred -----------------------------------------------------------------EEEEeecccceEE--
Q 011924 290 -----------------------------------------------------------------LCRLLNFMTEKVI-- 302 (475)
Q Consensus 290 -----------------------------------------------------------------~~~v~d~~~~~~~-- 302 (475)
..+.|+..+....
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 1345555443321
Q ss_pred --EEe------eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe---ecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 011924 303 --ICL------LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTC 371 (475)
Q Consensus 303 --~~~------~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~t~s~dg~v 371 (475)
.+. ..+.+++.++.|++.+.|+..|.|-+|++++|-...++ ..|..+|+.++..--++.+++++.+|.+
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 111 25678999999999999999999999999999888888 4799999999998888999999999999
Q ss_pred EEEECCCCC----------------------------------------ceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 372 RIWDLRNLS----------------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 372 ~iwd~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
++||..+.. +.++.+.+|.+.|+.+.|||||++|++++.|
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 999985411 1234456789999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
++|++||+.++.++-.+. ...++..+.|||+|.+||+...|..
T Consensus 598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred CcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence 999999999998775543 5678999999999999999988743
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=179.47 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=196.5
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|++|+| ...++++|+.||+|++|++...+... .+....|.++|.+++| +.+|.. +++|+.|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W--sddgsk-Vf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW--SDDGSK-VFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE--ccCCce-EEeeccCCceEEEEccC
Confidence 35888888 56788899999999999998764332 3666789999999999 999987 88889999999999999
Q ss_pred CeeeeeeeccccEE---eccCC--ceEE------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 267 YQLSKHFRFPWPVN---VSSSY--CIIL------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 267 ~~~~~~~~~~~~v~---~s~~~--~~l~------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
++....-.|..+|. +-+.. ..|+ +++.||....+++.++. .++++. --..+++++..++.|.+|
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D--v~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD--VLYPMAVVATAERHIAVY 181 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh--ccCceeEEEecCCcEEEE
Confidence 98776666887777 22222 2332 67888888877776544 344433 234577777788888888
Q ss_pred ECCCCceEE-Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecCC---------CceEEEEEcc
Q 011924 333 DSMTGKTIA-SLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNL---------GAIRSIRYTS 400 (475)
Q Consensus 333 d~~~~~~~~-~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~---------~~v~~l~~sp 400 (475)
+++.+.... .++ .-.-.++|++..++....|.|+-.|.|.|-.+..+ .+.-.+++.|. -+|.+++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 887553221 111 12346889999998888899999999999988652 13344455554 2688999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE-Eec
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWD 453 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~-~~D 453 (475)
....|++++.||++.+||-.....+.....|..+|++.+|+.+|.+++-+ +.|
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 88899999999999999987777777878899999999999999999865 444
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.9e-22 Score=183.20 Aligned_cols=276 Identities=13% Similarity=0.143 Sum_probs=209.2
Q ss_pred cceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc-EEEEEecC
Q 011924 133 LRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK-LLVAGGFQ 208 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~lvsg~~d 208 (475)
++.+-|.+....+.++. ++.+.++.........+.+ -++...||-+.+| +|. .++++|..
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS----------------~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS----------------IHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhhee----------------eeeccCccceeeecCCCceEEEecccc
Confidence 34444555555555543 4666666543222222211 1233456777766 777 89999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
.-++.||+.+.+..............+....+ |+++++ ++..+..|.|.+....+++.+..++..+.|.
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV--Shd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG~v~-------- 348 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEV--SHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEGVVS-------- 348 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEe--cCCCCe-EEEcccCceEEeehhhhhhhhheeeeccEEe--------
Confidence 99999999876654322222233445666677 999996 7777799999999999999999999999999
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC--eEEEEEecCCCEEEEEe
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF--SFASAWHPNGVTFATGN 366 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~--v~~~~~sp~g~~l~t~s 366 (475)
.++|+.+|+.|++++.+|.|.+||++..++++++.- .+. -+++|.+++|.+||+|+
T Consensus 349 ---------------------~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 349 ---------------------DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred ---------------------eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEecc
Confidence 999999999999999999999999999999988873 333 45678889999999999
Q ss_pred CCCeEEEEECCC-----CCceEEEEecCCCceEEEEEccCCCEEEEEcC--CCeEEEEECCCCeeEEEEec---cCCCeE
Q 011924 367 QDKTCRIWDLRN-----LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--ADFVHVYDVKSGYEKEQEID---FFGEIS 436 (475)
Q Consensus 367 ~dg~v~iwd~~~-----~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~i~ 436 (475)
..|.|.|||..+ ..+|+..+..-..+|+++.|+|++++||.+|. .+.+++..+.+......+.. .-+.|+
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 999999999642 24577777777789999999999999999886 56899988887654443332 236799
Q ss_pred EEEEcCCCCeEEEEEecCCcc
Q 011924 437 GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++|||.|-+|++|-.+|.++
T Consensus 487 c~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred EEEecCCCceEEeecCCCcee
Confidence 999999999999999988764
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=199.41 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=218.5
Q ss_pred eeecc-cceeEEecCCCeEEEe-cCCeEEEEecCCC-CceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEE
Q 011924 128 ILHFQ-LRNLVWATSKHDVYLM-SHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVA 204 (475)
Q Consensus 128 ~~h~~-lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvs 204 (475)
..|+. +..++|.+++..|++. +++.|.+|...+. ...+.++. .+..|++++..+++|++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~------------------~g~~v~~ia~~s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI------------------SGELVSSIACYSNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc------------------cCceeEEEeecccceEE
Confidence 34554 3445577777777765 6789999998766 33333321 33478999999999999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEecc
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~ 283 (475)
|+.+++|.++.+...... .++..-.-++.++++ +.+|++ ++.||.|-.|++-++........+. |..+|.
T Consensus 72 ~s~~~tv~~y~fps~~~~---~iL~Rftlp~r~~~v--~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl--- 142 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEED---TILARFTLPIRDLAV--SGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL--- 142 (933)
T ss_pred eeccceEEEeeCCCCCcc---ceeeeeeccceEEEE--ecCCcE-EEeecCceeEEEEeccccchheeecccCCcee---
Confidence 999999999999876543 122223446788888 899986 9999999999999998877777776 899999
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC--------CCCeEEEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--------LDFSFASAW 355 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h--------~~~v~~~~~ 355 (475)
++.|+|++++||+.+-||.|++|++.++.+..++.+- ...+..++|
T Consensus 143 --------------------------~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 143 --------------------------QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred --------------------------eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee
Confidence 9999999999999999999999999999877776541 334567899
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 356 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 356 sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
+|+|..|+..+.|++|++|+... ......+.. +...+..+.|+|+|+|||+++.+|.|.|||+++.+. .....
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~ 271 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKR 271 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccc
Confidence 99988899999999999999976 666666654 334589999999999999999999999999998322 33456
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 434 EISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.|.+++|-|+++.|-.-.+-|+.+....+
T Consensus 272 ~Vc~~aw~p~~n~it~~~~~g~~~~~~~i 300 (933)
T KOG1274|consen 272 AVCCEAWKPNANAITLITALGTLGVSPAI 300 (933)
T ss_pred eeEEEecCCCCCeeEEEeeccccccChhh
Confidence 89999999999998877777776654443
No 97
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=211.88 Aligned_cols=227 Identities=15% Similarity=0.234 Sum_probs=202.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.++.. .++.+++||.+..+-+|.+...... ..+.+|.++|.+|.| ++... ++++|+.+|+|++||++..+
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f--~~~E~-LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTF--DTSER-LLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeec--Ccchh-hhcccccCCceeeeehhhhh
Confidence 4455554 6789999999999999988765544 346789999999999 87776 59999999999999999999
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
.++++. |...+. .+.|+|-+.+++.++.|+.+.+||++...+.+.+.+|.
T Consensus 104 ~vrtLtgh~~~~~-----------------------------sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 104 IVRTLTGHLLNIT-----------------------------SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred hhhhhhccccCcc-----------------------------eeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 888776 666777 89999999999999999999999999888999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
..+..+.|+|+|+++++|+.|.+++|||+.. ++....+..|.+.+..+.|+|..-.|++|+.|++|++||+++-..+.+
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 9999999999999999999999999999976 899999999999999999999999999999999999999998877777
Q ss_pred EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 428 EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 428 ~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.......|.+.+|+|+++.+++|..+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchh
Confidence 77777899999999999999888544
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.5e-22 Score=206.10 Aligned_cols=235 Identities=18% Similarity=0.288 Sum_probs=190.4
Q ss_pred eEEEEEE--cCcEEEEEe--cCceEEEEeCCCCC---------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 191 QVSTLAV--KDKLLVAGG--FQGELICKHLDRPG---------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~--~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
+|.+++. ++..+++|| .||.+.+|+...-- ..........|.+.|+|+.| +|+|++ |++||.|+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~~-lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGSY-LASGSDDR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCCe-EeeccCcc
Confidence 5778877 899999999 99999999874311 11112344678999999999 999997 99999999
Q ss_pred eEEEEECCCC------------------eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc
Q 011924 258 GVRDFDMGKY------------------QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK 318 (475)
Q Consensus 258 ~v~iwd~~~~------------------~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~ 318 (475)
.|.||..... +.+..+. |...|. .++|+|++.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-----------------------------Dv~Wsp~~~ 142 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-----------------------------DVNWSPDDS 142 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-----------------------------eeccCCCcc
Confidence 9999987630 1222222 444555 999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC------Cc
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL------GA 392 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~------~~ 392 (475)
+|++++.|++|.||+.++.+.+.++.+|.+.|-.+.|.|-|+|||+-+.|++|+||.+.. ....+.+..+- .-
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTF 221 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999865 55666665432 35
Q ss_pred eEEEEEccCCCEEEEEcC----CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-------------CC----eEEEEE
Q 011924 393 IRSIRYTSDGRYMATAEP----ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-------------TE----SLFIGV 451 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-------------g~----~l~~~~ 451 (475)
.+.+.|||||.+|+++-. -..+.|.+-.+.+.-..+.+|.+++.++.|+|. .. .+|+|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 678999999999998743 347999997666667788999999999999991 11 578899
Q ss_pred ecCCcce
Q 011924 452 WDRTYGS 458 (475)
Q Consensus 452 ~D~~~~~ 458 (475)
.|+++..
T Consensus 302 qDrSlSV 308 (942)
T KOG0973|consen 302 QDRSLSV 308 (942)
T ss_pred CCccEEE
Confidence 9988743
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.3e-23 Score=188.94 Aligned_cols=233 Identities=17% Similarity=0.194 Sum_probs=187.6
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~ 212 (475)
+.|+++...+... .+..+.+|+..++.....+... .+..+++.+| +|..+|+|+.|+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-----------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-----------------LGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccC-----------------cCCCcceeEEccCCceeEecCCCCcEE
Confidence 4588888887775 3466889999888765443221 1235677777 999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~ 292 (475)
.|+++.+... .-..-....|..+++ +++|++ +++...|..|++++.++...........++.
T Consensus 338 ~wdlDgn~~~---~W~gvr~~~v~dlai--t~Dgk~-vl~v~~d~~i~l~~~e~~~dr~lise~~~it------------ 399 (519)
T KOG0293|consen 338 MWDLDGNILG---NWEGVRDPKVHDLAI--TYDGKY-VLLVTVDKKIRLYNREARVDRGLISEEQPIT------------ 399 (519)
T ss_pred EecCCcchhh---cccccccceeEEEEE--cCCCcE-EEEEecccceeeechhhhhhhccccccCcee------------
Confidence 9999864422 111222345888999 999998 5555589999999998876666666677888
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC--eEEEEEec-CCCEEEEEeCCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF--SFASAWHP-NGVTFATGNQDK 369 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~--v~~~~~sp-~g~~l~t~s~dg 369 (475)
+.++|.+|+++++.-.+..+++||+...+.++.+.||... +-.-||.- +..++|+||.|+
T Consensus 400 -----------------s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 400 -----------------SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred -----------------EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 9999999999999999999999999988999999998753 44446654 668999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEEEEEcCCCeEEEEECCC
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~ 421 (475)
.|+||+.++ ++++.++.||...|.+++|+|. -.++|+|+.||+|+||-...
T Consensus 463 kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 463 KVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999987 8999999999999999999995 46899999999999998653
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.5e-22 Score=188.07 Aligned_cols=198 Identities=16% Similarity=0.242 Sum_probs=166.5
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
-..|+| ....|++|+.+++|++||+..... ......+.+|.+.|+.++| ++-...+|++++.|+.+.|||+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEc
Confidence 345777 667899999999999999976543 3345677899999999999 7877778999999999999999
Q ss_pred CC--Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ce
Q 011924 265 GK--YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KT 339 (475)
Q Consensus 265 ~~--~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~ 339 (475)
++ .+...... |..+++ |++|+| ++.+||+|+.|++|.+||+|.. ++
T Consensus 258 R~~~~~~~~~~~ah~~~vn-----------------------------~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~ 308 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVN-----------------------------CVAFNPFNEFILATGSADKTVALWDLRNLNKP 308 (422)
T ss_pred CCCCCCCcccccccCCcee-----------------------------EEEeCCCCCceEEeccCCCcEEEeechhcccC
Confidence 95 34434443 788999 999999 7888999999999999999954 57
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc-------------eEEEEecCCCceEEEEEccCCC-E
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-------------SVAVLKGNLGAIRSIRYTSDGR-Y 404 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~spdg~-~ 404 (475)
+.++.+|.+.|+++.|+| ....||+++.|+.+.|||+...+. ++..-.||...|..+.|+|+.. .
T Consensus 309 lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 309 LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence 889999999999999999 668899999999999999964332 3466678999999999999875 5
Q ss_pred EEEEcCCCeEEEEECC
Q 011924 405 MATAEPADFVHVYDVK 420 (475)
Q Consensus 405 la~~~~dg~i~iwd~~ 420 (475)
|++++.|+.++||.+.
T Consensus 389 I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 389 IASVAEDNILQIWQMA 404 (422)
T ss_pred EEEecCCceEEEeecc
Confidence 6778899999999976
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=179.19 Aligned_cols=260 Identities=19% Similarity=0.216 Sum_probs=188.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc--eEEEe--eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV--SFCSR--TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~--~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|++|+| +|+.|++++.|+.|++|+++.-.. ..|.+ +..+| -+.+.| +|+.+.+++++-+..++++|.
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~F--apDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVF--APDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEE--CCCcceEEEEEccCCEEEEEE
Confidence 47999999 999999999999999999875221 11222 22233 466777 999998788887888999998
Q ss_pred CCC---Ceeeeeee----------cccc---EEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCC
Q 011924 264 MGK---YQLSKHFR----------FPWP---VNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDG 317 (475)
Q Consensus 264 ~~~---~~~~~~~~----------~~~~---v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g 317 (475)
+.. |....++. +.-+ +-...++..|+ .+.+|++. |+.+.++. .-+..++||+|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC
Confidence 743 22221111 1111 11233344443 57899999 77776655 34578899999
Q ss_pred cEEEEEeCCCcEEEEECC---CC-----ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---C---ceE
Q 011924 318 KLLIIVGDNPDGLLVDSM---TG-----KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---S---ESV 383 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~---~~-----~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~---~---~~~ 383 (475)
+++++++--..+++|.+- .| +.+..|+||+..|..++|+|++..++|.|.||++||||+.-. + ..+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 999999999999999864 23 245678999999999999999999999999999999998521 1 112
Q ss_pred EEE----ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 384 AVL----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 384 ~~~----~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++. ....+....+..+|+|+.||.+... .+++|..++|+....+. .|.+.|++|+|+|+|+++++++ |+.+.
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR 397 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence 221 1222334489999999999887654 69999999987665554 4888999999999999999876 44443
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-22 Score=194.23 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=199.2
Q ss_pred ceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 134 RNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 134 r~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
..+.|+..+..|.+ ..++.|.+|+..+.+....+... +...|.+++|++..+.+|+.+|.|.
T Consensus 221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----------------h~~rvg~laW~~~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----------------HASRVGSLAWNSSVLSSGSRDGKIL 283 (484)
T ss_pred EEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----------------cCceeEEEeccCceEEEecCCCcEE
Confidence 44457777777766 46788999998776655543321 4458999999999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
.+|++...... ....+|...|..+.| ++++.. +++|++|+.+.|||.....++..+. |...|.
T Consensus 284 ~~dvR~~~~~~--~~~~~H~qeVCgLkw--s~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK----------- 347 (484)
T KOG0305|consen 284 NHDVRISQHVV--STLQGHRQEVCGLKW--SPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK----------- 347 (484)
T ss_pred EEEEecchhhh--hhhhcccceeeeeEE--CCCCCe-eccCCCccceEeccCCCccccEEEeccceeee-----------
Confidence 99998776553 247789999999999 999986 9999999999999997666666655 899999
Q ss_pred EEeecccceEEEEeeeeeeEEECC-CCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe--
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-- 366 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-- 366 (475)
.++|+| ...+||+|+ .|+.|++||..+|+.+..+. -...|.++.|+|..+.|+++.
T Consensus 348 ------------------A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 348 ------------------ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred ------------------EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 999999 888999975 79999999999999988876 467899999999887777653
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+..|.||+..+ .+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999977 7889999999999999999999999999999999999998764
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=9.1e-23 Score=190.92 Aligned_cols=267 Identities=16% Similarity=0.202 Sum_probs=213.6
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccc-eeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQ-TQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
.+....+||+...+.|++|+....... .|-..+..++. ..|.+... +|+.|++||.-.++.||
T Consensus 427 IS~~trhVyTgGkgcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 427 ISNPTRHVYTGGKGCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ecCCcceeEecCCCeEEEeeccCCCCC--------------CccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 345557899999999999996432111 11111222221 23444333 99999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
|+..+.......+ ........++++ +|+.+. ++++..||.|.|||+.....++.|+ |...+.
T Consensus 493 DLAapTprikael-tssapaCyALa~--spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGas------------- 555 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL-TSSAPACYALAI--SPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS------------- 555 (705)
T ss_pred eccCCCcchhhhc-CCcchhhhhhhc--CCccce-eeeeccCCcEEEEEcccceeeecccCCCCCce-------------
Confidence 9987765432222 223345667777 999986 7777799999999999999999998 888888
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
|+.++++|..|-+|+-|.+|+.||+++++.++... ....|+++-..|++.++|.|-.++.|.|
T Consensus 556 ----------------cIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 556 ----------------CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred ----------------eEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEE
Confidence 99999999999999999999999999998776544 4678999999999999999999999988
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
-... +.....+.-|.+-|.++.|.+-|+++++.+.|+.+..|.+.-|..+.+.. ....|.++..|-|.++|++|+.|
T Consensus 619 lh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 619 LHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EecC--CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 8875 45566777788999999999999999999999999999998887776654 45789999999999999999998
Q ss_pred CC
Q 011924 454 RT 455 (475)
Q Consensus 454 ~~ 455 (475)
..
T Consensus 696 kk 697 (705)
T KOG0639|consen 696 KK 697 (705)
T ss_pred cc
Confidence 54
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.3e-21 Score=189.87 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=205.7
Q ss_pred eecccceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEE-EEE---cCcEEE
Q 011924 129 LHFQLRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST-LAV---KDKLLV 203 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~---~~~~lv 203 (475)
.|.+-...+..++.-.+...+ ++++.+|....+.-.+...+.+|. + -|.+ +++ ++..|+
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---------------g-~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---------------G-FIANSICYAESDKGRLV 75 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCc---------------c-eeeccceeccccCcceE
Confidence 344332233344444344444 688999987665544433333221 1 1222 444 667899
Q ss_pred EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEec
Q 011924 204 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVS 282 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s 282 (475)
+|+.|+.|.+|.+....+. .++.+|.+.|+++.. ..++. +++||+|.++++|-.. ++...+. |..+|-
T Consensus 76 ~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~--~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVW-- 144 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSI--GEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVW-- 144 (745)
T ss_pred eecccceEEEEecCCCCch---hhhhccccceeeeec--CCcCc--eEecccccceEEecch--hhhcccCCcchhee--
Confidence 9999999999999877666 678899999999987 55553 8999999999999873 4444444 777787
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
+++.-|.+ .+++|+.|..|++|.- ++.+.+|.||.+.|+.+++-|++ .|
T Consensus 145 ---------------------------Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~f 193 (745)
T KOG0301|consen 145 ---------------------------AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HF 193 (745)
T ss_pred ---------------------------eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-Ce
Confidence 88888877 8899999999999974 88899999999999999999875 58
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
++++.||.|++|++ . +..+..+.+|..-|.++...+++..+++++.|++++||+.. .+...+.-....|+++.+-+
T Consensus 194 lScsNDg~Ir~w~~-~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-D-GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred EeecCCceEEEEec-c-CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence 89999999999999 3 78999999999999999988888899999999999999966 44444443334899999988
Q ss_pred CCCeEEEEEecCCcceE
Q 011924 443 DTESLFIGVWDRTYGSL 459 (475)
Q Consensus 443 dg~~l~~~~~D~~~~~l 459 (475)
+|. |++|++||.++.+
T Consensus 270 NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 270 NGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCC-EEEeccCceEEEE
Confidence 875 7789999877543
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.9e-21 Score=194.40 Aligned_cols=229 Identities=16% Similarity=0.226 Sum_probs=187.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+.+++ +|.+|++++.+|.|++|+....... ..+...+...|.+++. .+. .|++|+.+++|.+|.+..++
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~----~s~-~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIAC----YSN-HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEee----ccc-ceEEeeccceEEEeeCCCCC
Confidence 4556666 8999999999999999997655211 1222225666777765 333 49999999999999998876
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
.-..+. +..+++ +++|+.+|+++|.|++|-.|++.++.+......+.+|.
T Consensus 88 ~~~iL~Rftlp~r-----------------------------~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 88 EDTILARFTLPIR-----------------------------DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred ccceeeeeeccce-----------------------------EEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence 553333 566778 99999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC--------CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--------LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--------~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
++|.++.|+|++++||+.+-||+|+|||+.+ +.+..++.+- ...+..++|+|+|..|+..+.|+.|.+|+.
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence 9999999999999999999999999999976 6655555431 345678999999888888889999999999
Q ss_pred CCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+......+.. +...+..+.|||+|+|||++.-|+.+
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 88877776664 33459999999999999999988765
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=8.8e-20 Score=174.19 Aligned_cols=266 Identities=16% Similarity=0.156 Sum_probs=191.2
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
.++.+..|+..+++....+... ..+.++++ +++.+ ++++.++.|++|++......
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-------------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--- 66 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-------------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--- 66 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-------------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---
Confidence 4688999998777654443321 01234555 67665 56778899999998865433
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEE-------EEEEee
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIIL-------LCRLLN 295 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~-------~~~v~d 295 (475)
.....+.. +..+.+ +|+++.++++++.++.|++||+.+.+.+..+. .+..+.++|++..++ .+..||
T Consensus 67 ~~~~~~~~-~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 67 GTLPSGPD-PELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred EeccCCCC-ccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 22222222 456667 99999766677778999999999888777665 245677899988875 245678
Q ss_pred cccceEEEEe---eeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecCC-----C--CeEEEEEecCCCEEEE
Q 011924 296 FMTEKVIICL---LCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHL-----D--FSFASAWHPNGVTFAT 364 (475)
Q Consensus 296 ~~~~~~~~~~---~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h~-----~--~v~~~~~sp~g~~l~t 364 (475)
..+++..... ....+++|+|+|++|++++ .++.|++||+.+++.+..+..+. . ....++|+|+++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 144 TKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 8776654332 2445789999999886554 58999999999998877665321 1 2346889999998655
Q ss_pred E-eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 365 G-NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 365 ~-s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+ ..++++.+||+++ ++.+..+. +...+.+++|+|+|++|++++ .++.|+|||+.+++.+..+.. ...+.+++|+|
T Consensus 224 ~~~~~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 224 ALGPANRVAVVDAKT-YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EcCCCCeEEEEECCC-CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 4 4567899999976 56555443 344788999999999998864 589999999999988887764 46678998876
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.2e-20 Score=175.74 Aligned_cols=248 Identities=16% Similarity=0.172 Sum_probs=182.9
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---c
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F 275 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~ 275 (475)
+.++++++.+|.|++|++.+.+.. ..+..+. .+..+.| +|+|+.++++++.++.|++||+.+++....+. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~---~~~~~~~-~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT---RTFPVGQ-RPRGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE---EEEECCC-CCCceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence 357889999999999999765543 2333333 3567888 99998766778889999999999888776554 2
Q ss_pred cccEEeccCCceEE-------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCC-cEEEEECCCCceEEEee
Q 011924 276 PWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLC 344 (475)
Q Consensus 276 ~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~~~~l~ 344 (475)
+..+.+++++..+. .+.+||+.+++.+.... .+.+++|+|+|+++++++.++ .+.+||..+++.+..+.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 34566888887663 58899998876655443 457899999999999988765 46778998887766554
Q ss_pred cCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEEecCC-------CceEEEEEccCCCEEEEE-cCCCeEE
Q 011924 345 GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNL-------GAIRSIRYTSDGRYMATA-EPADFVH 415 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~~~~~-------~~v~~l~~spdg~~la~~-~~dg~i~ 415 (475)
. ...+.+++|+|++++|+++ ..++.|++||+++ ++.+..+..+. .....++|+|+|++++++ ..++.|.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 3346789999999988655 4689999999976 55555554221 123468899999986554 4567899
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe-cCC
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW-DRT 455 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~-D~~ 455 (475)
+||+.+++....+ .+...+.+++|+|+|++|+++.. +++
T Consensus 233 v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 233 VVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSND 272 (300)
T ss_pred EEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCe
Confidence 9999988766544 34567899999999999998743 444
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.4e-22 Score=189.58 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=186.6
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecC--CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.-|.++.+ ..+.+++|| .|.|+|||+...+.......+.. ....+..+.+ .|+|+. |++|+.-.++.|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL--~pdgrt-LivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL--LPDGRT-LIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEe--cCCCce-EEeccccceeeeeec
Confidence 345666666 667788886 67899999987765433333222 3345667777 899997 888888999999999
Q ss_pred CCCeee--eeeeccc-cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 265 GKYQLS--KHFRFPW-PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~~~--~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
...... ..+.... ... .+++|||.++.+++..||.|.|||+++...++
T Consensus 495 AapTprikaeltssapaCy-----------------------------ALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACY-----------------------------ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred cCCCcchhhhcCCcchhhh-----------------------------hhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 764432 2333222 222 78899999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.|+||++.+.||.++++|..|.||+-|.+||-||+|. ++.+.... ..+.|.++.++|.+.+||+|-.++.|.|....
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre-grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s- 622 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS- 622 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhh-hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-
Confidence 9999999999999999999999999999999999997 44333322 34679999999999999999999999998854
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....++..|..-|.++.|++.|+++++.+.|.-++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLn 658 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 658 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhh
Confidence 556778888999999999999999999999886554
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=6.7e-20 Score=172.06 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=199.1
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.+.+.+...+.+..|....+...+.... .+......|+||+| .+.-+++|..+|.|.||+.....
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~~l~k~~~~--------------fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGGSLVKRQGI--------------FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred CcEEEEeCCceEEEEEccCCceEEEeec--------------cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce
Confidence 3444455556777787666655443222 12223367999999 66778999999999999986544
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEE-eccCCceE--EE----
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVN-VSSSYCII--LL---- 290 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~-~s~~~~~l--~~---- 290 (475)
.. +....|.+.|.++++ -.+|. |++|+.|+.|..|| ...+..+... ..++++ ..+....+ ++
T Consensus 279 ~~---k~~~aH~ggv~~L~~--lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 279 IS---KQVHAHDGGVFSLCM--LRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EE---eEeeecCCceEEEEE--ecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 33 333389999999999 78885 67799999999999 3333333332 222333 22222212 11
Q ss_pred EEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 011924 291 CRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
+-.-++..+-.+.... ..-.++.+|+..++++++.|+.+++|+ ..+++.+.. -.+++.|+.|+|.| .+|.|..
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence 1111222222221111 223789999999999999999999999 455554443 46789999999999 9999999
Q ss_pred CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEe-ccCCCeEEEEEcCCCC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEI-DFFGEISGISFSPDTE 445 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~-~~~~~i~~l~fspdg~ 445 (475)
.|...+.|..+ ...+..-.. ..+++.++|+|+|.+||+|+.|+.|+||-+... ....... .+..+|+.+.||+|++
T Consensus 427 ~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 427 TGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ 504 (626)
T ss_pred cceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc
Confidence 99999999976 555554444 789999999999999999999999999998654 3333322 2447899999999999
Q ss_pred eEEEEEecC
Q 011924 446 SLFIGVWDR 454 (475)
Q Consensus 446 ~l~~~~~D~ 454 (475)
+|.+-+.|-
T Consensus 505 ~~~~~S~d~ 513 (626)
T KOG2106|consen 505 FLVSNSGDY 513 (626)
T ss_pred eEEeccCce
Confidence 999887764
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=173.17 Aligned_cols=256 Identities=15% Similarity=0.236 Sum_probs=205.4
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEe------CCCCC
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKH------LDRPG 220 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~------~~~~~ 220 (475)
.+....+|+..++++. ....|| .+.|.++.| .+.++++++.|++-.||. +..+.
T Consensus 168 ADhTA~iWs~Esg~CL--~~Y~GH----------------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 168 ADHTARIWSLESGACL--ATYTGH----------------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN 229 (481)
T ss_pred cccceeEEeeccccce--eeeccc----------------ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence 4678889998877543 333333 236899999 778899999999999997 21100
Q ss_pred -------------------------------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 221 -------------------------------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 221 -------------------------------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.......+.+|.+.|.+..| -..|+. ++++|+|.+..+||++++.+
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW--L~gg~Q-~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW--LAGGQQ-MVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--hcCcce-eeeeeccccceeeeeccCce
Confidence 00112234568888888888 667775 99999999999999999999
Q ss_pred eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeecCC
Q 011924 270 SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHL 347 (475)
Q Consensus 270 ~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~ 347 (475)
+..+. |...++ .++-+|..+++++++.|.+.++||.+.. ..+..|+||.
T Consensus 307 v~~LtGHd~ELt-----------------------------HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 307 VNILTGHDSELT-----------------------------HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred eccccCcchhcc-----------------------------ccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 99888 888888 8899999999999999999999999833 4578899999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE-
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE- 426 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~- 426 (475)
+.|+++.|.-+. .+++|+.|.+|+|||+++...++.++.. .+++..++.+..++++|.--.+..|++||+... .+.
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaR 434 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLAR 434 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCC-cccc
Confidence 999999998764 5899999999999999998999999986 458899999998899999988899999998643 332
Q ss_pred ----EEeccCCCeEEEEEcCCC--CeEEEEEecCCcc
Q 011924 427 ----QEIDFFGEISGISFSPDT--ESLFIGVWDRTYG 457 (475)
Q Consensus 427 ----~~~~~~~~i~~l~fspdg--~~l~~~~~D~~~~ 457 (475)
.-.+|...|.|++|..+- .-|++++.|+.+.
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred CCcccccccceeeeeeeccccCcccccccccccceee
Confidence 234688899999998653 4578888887654
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-20 Score=158.09 Aligned_cols=239 Identities=14% Similarity=0.184 Sum_probs=192.2
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCCC-CCeEEEEE-eCCCeEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPS-GAVHFTAS-NNDCGVRD 261 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~-s~dg~v~i 261 (475)
+...|.|.+| .|.+|++|+.|..|++..++...... .-..+.-|.+.|..++|.-.|. |..+|+++ ..|+.|++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 3458999999 89999999999999998775433111 0123445888999999975553 33445554 46788999
Q ss_pred EECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 262 FDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
-|..+++....+. |.+-+. ++ ++-+|-++++|+.|.+|+.||++-..++
T Consensus 168 tdc~~g~~~~a~sghtghil-----------------------------al-yswn~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHIL-----------------------------AL-YSWNGAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred eecCCCCcceeecCCcccEE-----------------------------EE-EEecCcEEEccCCCceEEEEeeecccee
Confidence 9999998887776 555554 22 3446889999999999999999988888
Q ss_pred EEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 341 ASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 341 ~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
.++.. ....|.+++..|.|++|++|-.|..+.+||+|. +++++.+..|...|++++|||...+|++++.|..
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccce
Confidence 87753 235789999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEECCCC----eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 414 VHVYDVKSG----YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 414 i~iwd~~~~----~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++-|++.. -.+.....|...+..+.|+|..-.+++.+.|.+..
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 999998642 23344556888999999999988888999998763
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-21 Score=190.78 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=163.6
Q ss_pred eeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..|+.|+| +.++|++++.|.+|++|.+...... .+ ..|+..|+||+| +|....+|++|+-||.||||++...+
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL---~~-F~HndfVTcVaF--nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL---KV-FSHNDFVTCVAF--NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCccee---eE-EecCCeeEEEEe--cccCCCcEeecccccceEEeecCcCe
Confidence 47999999 8999999999999999998864433 33 358899999999 99887789999999999999999888
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec---
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--- 345 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--- 345 (475)
.+.-.....-|+ +++|.|+|+..++|+-+|.+++|++...+......-
T Consensus 444 Vv~W~Dl~~lIT-----------------------------Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 444 VVDWNDLRDLIT-----------------------------AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred eEeehhhhhhhe-----------------------------eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 877666667788 999999999999999999999999987776554421
Q ss_pred ------CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 346 ------HLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 346 ------h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
|. .|+.+.|.| +...+++.+.|..|||+|.+. ..++..+++.. ..-....|+.||++|++|+.|..|+|
T Consensus 495 ~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 495 NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 33 799999998 445677777899999999976 67888888744 23347789999999999999999999
Q ss_pred EECC
Q 011924 417 YDVK 420 (475)
Q Consensus 417 wd~~ 420 (475)
|+..
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9974
No 113
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=181.54 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=182.6
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEee------------------ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRT------------------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~------------------~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
.|++++.|+++-.|.|||++-........+ ..+|+..|-+++| +..-+.+|++||.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--NRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--ccccceeEEecCCCceE
Confidence 578999999999999999974332222111 2357777888888 77777789999999999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
++||+.++++..++. |...|+ +++|+| ....|++|+.|+++.+.|.|..
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq-----------------------------~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQ-----------------------------TLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EEEEcCCCCcceehhhcCCcee-----------------------------EEEecCCCceEEEeccccceEEeeeccCc
Confidence 999999999999998 888999 999999 7788999999999999999842
Q ss_pred ceE-EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeE
Q 011924 338 KTI-ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFV 414 (475)
Q Consensus 338 ~~~-~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i 414 (475)
... ..++ ..+.|-.++|+| ....++++..||+|+-+|+|+.++++.+++.|.++|.++.+++.- .+|++++.++.|
T Consensus 320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 221 2222 356788999999 567888889999999999999999999999999999999998854 478999999999
Q ss_pred EEEECCCCeeEEEEecc---CCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 415 HVYDVKSGYEKEQEIDF---FGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~---~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
++|++....... ...| -+...|+++.|+-.++++.+.-..+..++.+..
T Consensus 399 klw~~~~~~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 399 KLWKFDVDSPKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEEeecCCCCcc-cccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999986543322 1222 256788889998766555443333444554443
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=185.75 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=195.1
Q ss_pred cccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 186 GFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 186 ~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..+...|..+.| +...|++||.|..|++|++...+.. ...++.+..+.++.+.+ .++++. ++++++|+.+++|+
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLaGs~g~it~~d~--d~~~~~-~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLAGSLGNITSIDF--DSDNKH-VIAASNDKNLRLWN 247 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-hhhhhhccCCCcceeee--cCCCce-EEeecCCCceeeee
Confidence 345567888888 5589999999999999999866622 24667788889999999 888886 88888999999999
Q ss_pred CCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 264 MGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 264 ~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
+...+...++. |...|+ ++.|......+++|+.|.+|++||+....+..+
T Consensus 248 vd~~r~~~TLsGHtdkVt-----------------------------~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVT-----------------------------AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ccchhhhhhhccccccee-----------------------------eehhhccccceeeccccchhhhhhhhhhheecc
Confidence 99999888888 888999 889988777799999999999999998877766
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+- ....+..|+.+ ...+++|-.|++||+||++. ..++.....+. .|+++..+++|..|.+.+.|+++.+.|+++.
T Consensus 299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred cc-ccccccceEec--ceeeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 54 34556777775 56789999999999999987 67777777654 8999999999999999999999999999987
Q ss_pred eeEEEEecc----CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEIDF----FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~~----~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.....+... ....+.+.|||++.|+++|+.||.+.
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 655554431 13588999999999999999999874
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=182.61 Aligned_cols=237 Identities=15% Similarity=0.203 Sum_probs=193.1
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.++.|.+||+ +.+.||.+-.+|.|-+|++... ......+..+.++.|.+++| ++.++ |++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W--~e~~R--LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAW--AEGGR--LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEE--ccCCe--EEeecCCceEEEEecc
Confidence 4457999999 7788999999999999999863 22223344456788999999 76653 8888899999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE--E
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA--S 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~ 342 (475)
+.+.+.... ..+++- +++.+|.+..+++|++||.++.++...++... .
T Consensus 99 ~lk~~~~~d~~gg~IW-----------------------------siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIW-----------------------------SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred cCceeEEecCCCccee-----------------------------EEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence 988887776 566666 99999999999999999988888877776543 3
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--------CCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------NLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--------~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
|.-.++.+.+++|+|++..+++|+.||.|++||+.. +..++.... ...-|+++.|-.++ .|++|...|+|
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V 227 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTV 227 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceE
Confidence 344568999999999999999999999999999976 554442221 22346777777555 68999999999
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
.+||...|..+.....|.+.|.+++.++++.++++++.|+++-.+-
T Consensus 228 ~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 228 TFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred EEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 9999999999999999999999999999999999999998764433
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=181.00 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=184.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
.+|.|++. .|.+|+.|+..|.|++|.+.++... .++..|=..|+++.| +-||.. |++||+||.|.+|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITcL~f--s~dgs~-iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITCLKF--SDDGSH-IITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeEEEE--eCCCcE-EEecCCCccEEEEEEEee
Confidence 47889988 7888888889999999999987755 555788889999999 999985 99999999999998732
Q ss_pred --------Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECC
Q 011924 267 --------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 267 --------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~ 335 (475)
-+..+.|. |.-+|+ .+...+ ...+|++++.|.++++||+.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsIT-----------------------------Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSIT-----------------------------DLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred cccccCCCccceeeeccCcceeE-----------------------------EEEecCCCccceEEEecCCceEEEEEec
Confidence 12333444 555555 666554 45689999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---------------ceEEEEecCCC--ceEEEEE
Q 011924 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---------------ESVAVLKGNLG--AIRSIRY 398 (475)
Q Consensus 336 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---------------~~~~~~~~~~~--~v~~l~~ 398 (475)
.|..+.++. ....+.+++.+|-++.++.|+.+|.|.+.++.+.. ..+..+.+|.+ +|+|++.
T Consensus 207 ~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 207 LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 999888877 56789999999999999999999999998875432 24566778887 9999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEE
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
+-||..|++|+.||.|.|||+.+..+++++....|+|+.+.+.|--+.++
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 99999999999999999999999888888776789999999866543333
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=6.5e-22 Score=175.12 Aligned_cols=211 Identities=18% Similarity=0.241 Sum_probs=170.3
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC------------------eeeeeee-ccccEEec
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY------------------QLSKHFR-FPWPVNVS 282 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~------------------~~~~~~~-~~~~v~~s 282 (475)
.+.......|++++.+-+| +|+|.. +++|+.|..|+|+|++.. -.++++- |..+|+
T Consensus 102 ~yEt~ylt~HK~~cR~aaf--s~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn-- 176 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAF--SPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN-- 176 (430)
T ss_pred ccceEEEeecccceeeeee--CCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc--
Confidence 3345666789999999999 999985 999999999999998731 1223332 555666
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE---EEeecCCCCeEEEEEecCC
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCGHLDFSFASAWHPNG 359 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~l~~h~~~v~~~~~sp~g 359 (475)
++.|+|....|++++.|++|+++|....... ..++ ...+|.++.|||.|
T Consensus 177 ---------------------------~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 177 ---------------------------DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG 228 (430)
T ss_pred ---------------------------ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC
Confidence 9999999999999999999999998744322 2232 45689999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cC-CC
Q 011924 360 VTFATGNQDKTCRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FF-GE 434 (475)
Q Consensus 360 ~~l~t~s~dg~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~ 434 (475)
.+|+.|.+-.++++||+.+ .++.... ..|.++|+++.+++.|++.++|+.||.|+|||--+++++.++.. |. .+
T Consensus 229 efllvgTdHp~~rlYdv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred ceEEEecCCCceeEEeccc-eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 9999999999999999976 4544333 34778999999999999999999999999999888888887764 54 47
Q ss_pred eEEEEEcCCCCeEEEEEecCCcceEEEEEeecc
Q 011924 435 ISGISFSPDTESLFIGVWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~ 467 (475)
|.+..|+.+|+||++.+.|..+ .|++...++.
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~v-kLWEi~t~R~ 339 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTV-KLWEISTGRM 339 (430)
T ss_pred eeeEEEccCCeEEeecCCccee-eeeeecCCce
Confidence 9999999999999999999766 5556554443
No 118
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=170.21 Aligned_cols=285 Identities=18% Similarity=0.194 Sum_probs=205.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---------cCcEE
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---------KDKLL 202 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---------~~~~l 202 (475)
++.+-|++++.-|+.. .++.+..|+.-..-...-. .+ ..+..+++ .++...+..|...+| +.+++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~--~~-~~~~~~~~--~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--DG-PLNFSKHL--SYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC--CC-ccccccce--eEEeccCCEEEEEEeeeccccCCCcccee
Confidence 4677799999887775 5677888875322111100 00 11111111 133334456777777 46788
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CCCeeeee--------e
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLSKH--------F 273 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~~~~~~~--------~ 273 (475)
++.+.+.-|++||.-+++.........+......+.++.|+|+|.. |++| ...+|++||+ +.|..... +
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 8899999999999987765543333222222223333344999997 6666 7789999999 44432221 1
Q ss_pred eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 274 RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 274 ~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
...+.+. |++|+| +.+.+++++....+-||.-..+.++..+-+|.+.|+.
T Consensus 205 gq~giis-----------------------------c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 205 GQKGIIS-----------------------------CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred cccceee-----------------------------eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 1234444 999999 6679999998888888888888999999999999999
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCC-ceEEE--EEccCCCEEEEEcCCCeEEEEECCC-CeeEEE
Q 011924 353 SAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLG-AIRSI--RYTSDGRYMATAEPADFVHVYDVKS-GYEKEQ 427 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l--~~spdg~~la~~~~dg~i~iwd~~~-~~~~~~ 427 (475)
++|.++|+.|.+|+. |-.|..||+|....++..+..|.+ .-..| ...|.|++||+|+.+|.|++||+++ |..+..
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 999999999999986 678999999998888888887765 22334 4478999999999999999999998 777778
Q ss_pred EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 428 EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 428 ~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+..+..-+.+++++|--..+++++..
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccceecCcccceeeeccCc
Confidence 88888899999999998888877644
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=178.90 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=201.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCce-EEE-------------eee-cCCCCceeEEEEEeCCCCCeEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FCS-------------RTT-YDDNAITNAVEIYGSPSGAVHF 250 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~-------------~~~-~~~~~~v~~l~~~~s~~g~~~l 250 (475)
++.+|++|++ ++.+.++++.+|+|.=|++.+.... ... ... ..|...+.++++ |++|++ |
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgky-l 217 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGKY-L 217 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCcE-E
Confidence 3446777777 8889999999999999998765522 100 111 267788889999 999997 9
Q ss_pred EEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
++|+.|..|.||+..+.+.+..+. |...|. +++|......|++++.|+.+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-----------------------------~L~fr~gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-----------------------------SLAFRKGTSELYSASADRSV 268 (479)
T ss_pred EecCCCceEEEecCcccchhhccccccccee-----------------------------eeeeecCccceeeeecCCce
Confidence 999999999999999999998877 888888 99999988899999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
++|++.....+.++.||++.|.++.-..-++.+-+|+.|+++++|++. ......+.++.+.+-|++|-. ..++++|+
T Consensus 269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In-~~HfvsGS 345 (479)
T KOG0299|consen 269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIN-DEHFVSGS 345 (479)
T ss_pred EEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEec-ccceeecc
Confidence 999999988999999999999999888888888888899999999994 455667788888999999975 45899999
Q ss_pred CCCeEEEEECCCCeeEEEEec-cC-----------CCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 410 PADFVHVYDVKSGYEKEQEID-FF-----------GEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~~-~~-----------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
.+|.|.+|++.+.+++..... |. ..|++++..|....+++|+++|.++ |+....
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vr-LW~i~~ 411 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVR-LWKIED 411 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceE-EEEecC
Confidence 999999999988877766542 21 2789999999999999999999884 444433
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.3e-21 Score=172.16 Aligned_cols=251 Identities=17% Similarity=0.161 Sum_probs=189.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC----
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM---- 264 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~---- 264 (475)
.|..++. ....+.+++.|.+-++|.++.. .|...+.+|.+.|++|.| ++.+. +++++|.|++..||..
T Consensus 150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikf--h~s~~-L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 150 GIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKF--HNSGL-LLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEe--ccccc-eEEEccCCcchHHHHHhhcC
Confidence 4666666 4557888999999999999874 455788899999999999 88887 5999999999999962
Q ss_pred CCCeeeee--------ee-ccccEE-----eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 265 GKYQLSKH--------FR-FPWPVN-----VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 265 ~~~~~~~~--------~~-~~~~v~-----~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+..+.... .. +..... ...++..|- +-+..+ ..+...|.+..|-..|+.+++++.|.+..
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~l-----tgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMRL-----TGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeeee-----eccccceEehhhhcCcceeeeeeccccce
Confidence 11111000 00 000000 011111110 000000 00111344777888999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+||+++|.++..|.||....+.++-||..+++++++.|.+.++||+|..-..+..+++|...|+++.|..+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 999999999999999999999999999999999999999999999997778899999999999999998765 5789999
Q ss_pred CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 411 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
|.+|+|||+++.......+....++..++.+..++.|+.--.++
T Consensus 377 DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred CceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc
Confidence 99999999998766555555678888888888777777654443
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.5e-21 Score=165.30 Aligned_cols=226 Identities=19% Similarity=0.204 Sum_probs=173.4
Q ss_pred EecCCeEEEEecCCCCc-eEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEecCceEEEEeCCCCCc
Q 011924 147 LMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 147 ~~~~~~v~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
..+|..|+++...++.. ..+..+.|| ..||.-++| -|.+|+++++||+|+||.-..+..
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh----------------~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGH----------------SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCC----------------CCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence 35678888888766554 444555554 246788888 689999999999999999776542
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-e-eee--eeeccccEEeccCCceEEEEEEeecc
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-Q-LSK--HFRFPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-~-~~~--~~~~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
. .......|.+.|++|+|.++.-|- +|++++.||.|.|.+.+.. . ... .+.|.-.|+
T Consensus 93 ~-k~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn----------------- 153 (299)
T KOG1332|consen 93 T-KAYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN----------------- 153 (299)
T ss_pred h-hhhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc-----------------
Confidence 2 123445789999999995554554 5889999999999988653 1 111 222666777
Q ss_pred cceEEEEeeeeeeEEECCC---C-----------cEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEEecCC--
Q 011924 298 TEKVIICLLCLQHSSQSPD---G-----------KLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNG-- 359 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~---g-----------~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~g-- 359 (475)
+++|.|. | +.|++|+.|..|+||+...+. .-.+|.+|.+.|+.++|.|.-
T Consensus 154 ------------sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 154 ------------SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred ------------eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC
Confidence 8888885 4 679999999999999988763 345689999999999999943
Q ss_pred --CEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 360 --VTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 360 --~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.+||++++||+|.||-.+.... ....+......+..+.||+.|.+|++++.|+.|.+|--
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 5899999999999998864222 23334445678999999999999999999999999973
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=191.90 Aligned_cols=185 Identities=15% Similarity=0.238 Sum_probs=158.5
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
+..|.| +.....+|++++..|.|.+||+.. .+++..|. |...++ +
T Consensus 90 ~~DVkW--~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-----------------------------~ 138 (839)
T KOG0269|consen 90 AADVKW--GQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-----------------------------K 138 (839)
T ss_pred hhhccc--ccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee-----------------------------e
Confidence 445666 554455799999999999999977 44555666 888999 9
Q ss_pred EEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 311 SSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
+.|++ ...+|++|++||.|++||++..+...++.+....|+.++|+| .+.+|+++...|.+++||+|.+.++...+.+
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 99998 677889999999999999999998889998889999999999 7899999999999999999999999999999
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEE
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~ 450 (475)
|.++|.++.|+|++.+||+|+.|++|+|||+.++...... +.-..+|..+.|-|...+.++.
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence 9999999999999999999999999999998865433322 2345789999999987765533
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=167.14 Aligned_cols=266 Identities=15% Similarity=0.142 Sum_probs=202.9
Q ss_pred CCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 179 HPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 179 ~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
+|..+..++....-.|+.| .|.+|++|..+|.|.+||+.+-+.. +++..|-.+|++++| |++|+. |+++|.|
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~W--S~dgr~-LltsS~D 86 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCW--SRDGRK-LLTSSRD 86 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEe--cCCCCE-eeeecCC
Confidence 4444444444444566667 8999999999999999999886654 778899999999999 999997 9999999
Q ss_pred CeEEEEECCCCeeeeeeeccccEE---eccCCceEEEEEEeecc---------cceEEEEee------eeeeEEECCCCc
Q 011924 257 CGVRDFDMGKYQLSKHFRFPWPVN---VSSSYCIILLCRLLNFM---------TEKVIICLL------CLQHSSQSPDGK 318 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~~v~---~s~~~~~l~~~~v~d~~---------~~~~~~~~~------~i~~~~~sp~g~ 318 (475)
..|.+||+..+.++..+.++.+|. ++|-....+.+.+++-. ....++... ...+..|.+.|+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 999999999999999998776665 56655555433333222 111111110 223556889999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---c-----eEEEEec-
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---E-----SVAVLKG- 388 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~-----~~~~~~~- 388 (475)
++++|...|.+.+++..+.++++.++-.. ..|..+.++-.|+.|+.-+.|+.||.|+++..- + +.+.++.
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 99999999999999999999998887655 778999999999999999999999999986311 1 1111111
Q ss_pred -CCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCeeEEEEeccCC-CeEEEEEcCCCCeEEEE
Q 011924 389 -NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIG 450 (475)
Q Consensus 389 -~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~fspdg~~l~~~ 450 (475)
+..+-.+++||.+|.|++.++. ...++||....|..++.+.+..| ....+.|+|-...|++-
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1224457899999999988774 46799999999999999988774 57889999987777665
No 124
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.6e-20 Score=182.59 Aligned_cols=263 Identities=15% Similarity=0.140 Sum_probs=188.1
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEe----C------CCCCeEEEEEeCCCeE
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG----S------PSGAVHFTASNNDCGV 259 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~----s------~~g~~~l~s~s~dg~v 259 (475)
..++.| ....|...-.|..|+|||++.....-......-|..-|+.|..+. + |.+ .|++++.|++|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TI 404 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTI 404 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc--ceeEecCCCcE
Confidence 445556 456788888999999999987654332334445677777776642 1 223 38999999999
Q ss_pred EEEECCCCeeeeeee----ccccEE---eccCCceE--EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 260 RDFDMGKYQLSKHFR----FPWPVN---VSSSYCII--LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~----~~~~v~---~s~~~~~l--~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
|+|++..+..-..+. ....+. ...+.+.+ ...-++|...-........+.++++||+|++||+|..-|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999997632211111 000000 00011111 112233332222222233567999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEE----------
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR---------- 397 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~---------- 397 (475)
||++..-..+..++.|...|.|+.++- ..++||+++.|..|.|||+.....++.++.+|...|+++.
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999999888889999999999999985 4589999999999999998654555556655555555444
Q ss_pred ---------------------------------------EccCCCEEEEEcCCCeEEEEECCCCeeEEEEec---cCCCe
Q 011924 398 ---------------------------------------YTSDGRYMATAEPADFVHVYDVKSGYEKEQEID---FFGEI 435 (475)
Q Consensus 398 ---------------------------------------~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i 435 (475)
..|..+++++++.|..|+|||+.+|+..+.+.+ |.|..
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 445666788999999999999999999988875 66889
Q ss_pred EEEEEcCCCCeEEEEEecCCc
Q 011924 436 SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+...|.|.||++.+.|.++
T Consensus 645 IKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred EEEEECCCccEEEEeecCCce
Confidence 999999999999999999886
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.9e-21 Score=186.71 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=194.8
Q ss_pred cceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeE-EEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|..+++ ++..+++++.||++++|.-...... ....+.++.+.|.. +++. +..+..+++|+.|.+|.+|.+.
T Consensus 13 H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l-~~~~~~~~~g~i~~~i~y~--e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYL-ETHAFEGPKGFIANSICYA--ESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred CccchheeEecCCeEEeecCCCCceeeeeccCcccc-cceecccCcceeeccceec--cccCcceEeecccceEEEEecC
Confidence 3345677777 7778999999999999997544433 23455667777776 7773 3333459999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
...+...+. |...|+ |++...++. +++|+-|.++++|-. +++...+.
T Consensus 90 ~~~P~~~LkgH~snVC-----------------------------~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~ 137 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVC-----------------------------SLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ 137 (745)
T ss_pred CCCchhhhhcccccee-----------------------------eeecCCcCc-eEecccccceEEecc--hhhhcccC
Confidence 999888887 899999 888888887 999999999999964 67777899
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
+|+..|++++.-|.+ .++|||.|++|++|.- ++.++++.+|..-|+.+++-|++ .+++++.||.|++|++ +|..
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence 999999999999987 8999999999999975 67899999999999999998876 4678899999999998 7889
Q ss_pred EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....+|..-|.+++..+++..+++++.|++++
T Consensus 212 l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred eeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 999999999999999888889999999999875
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.1e-20 Score=162.68 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=182.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.--|.++.| .|+.+++++.|++|+||+..... .-.|...-..|.+.|..|.|....-|+ ++++++.|+++.||.=
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEE 90 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCCceeeeee
Confidence 3346888888 89999999999999999965443 444566677899999999997333455 5999999999999964
Q ss_pred CC-------Ceee--eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEE
Q 011924 265 GK-------YQLS--KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 265 ~~-------~~~~--~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iw 332 (475)
.. .+-+ .++. ....|. .+.|.| -|-.||+++.||.++||
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~-----------------------------DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVT-----------------------------DVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred cccccccccceeEEEEEeecCCccee-----------------------------EEEecchhcceEEEEeccCcEEEEE
Confidence 21 1111 1222 344555 899999 68889999999999999
Q ss_pred ECCCCce------EEEee-------cCCCCeEEEEEec---CCCEEEEEeCC-----CeEEEEECCCCC---ceEEEEec
Q 011924 333 DSMTGKT------IASLC-------GHLDFSFASAWHP---NGVTFATGNQD-----KTCRIWDLRNLS---ESVAVLKG 388 (475)
Q Consensus 333 d~~~~~~------~~~l~-------~h~~~v~~~~~sp---~g~~l~t~s~d-----g~v~iwd~~~~~---~~~~~~~~ 388 (475)
+....-. .+.++ .+..+..|+.|+| ...+||.|+.+ +.+.||.....+ ..+.++.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 8764322 22222 3567789999998 45789998876 478999875433 35667778
Q ss_pred CCCceEEEEEccC-C---CEEEEEcCCCeEEEEECCCC--------------------eeEEEEeccCCCeEEEEEcCCC
Q 011924 389 NLGAIRSIRYTSD-G---RYMATAEPADFVHVYDVKSG--------------------YEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 389 ~~~~v~~l~~spd-g---~~la~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~i~~l~fspdg 444 (475)
|..+|+.++|.|+ | ..||+|+.|| |+||.++.. ..+..+.+|.++|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 3 4799999999 999998731 1234455799999999999999
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
..|++++.||.++
T Consensus 301 tiLsStGdDG~VR 313 (361)
T KOG2445|consen 301 TILSSTGDDGCVR 313 (361)
T ss_pred eEEeecCCCceee
Confidence 9999999999986
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.7e-20 Score=163.37 Aligned_cols=228 Identities=13% Similarity=0.189 Sum_probs=177.5
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEc----CcEEEEEecCceEEE
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVK----DKLLVAGGFQGELIC 213 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~lvsg~~dg~i~v 213 (475)
...+...+...+|..|.+|+.........+ +. +...|+++.|. ...|++|+.||.|.+
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~l----------------l~--HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGIL----------------LS--HAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcce----------------ec--cccceEEEEecCCcchhheeeecCCCcEEE
Confidence 333333333356788999987665443321 11 13468999992 237999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v 293 (475)
|+... -.+...+..|.+.|+.|++ +|.|+. .++.+.|+.+++|++-+|+.-...+......
T Consensus 112 w~~~~---W~~~~slK~H~~~Vt~lsi--HPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at------------- 172 (362)
T KOG0294|consen 112 WRVGS---WELLKSLKAHKGQVTDLSI--HPSGKL-ALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT------------- 172 (362)
T ss_pred EEcCC---eEEeeeecccccccceeEe--cCCCce-EEEEcCCceeeeehhhcCccceeeccCCcce-------------
Confidence 99765 3456788889999999999 999985 8888899999999998887766655444444
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.+.|+|.|.++++++.++ |-+|.+.+.+....+.. +..+.|+.|- ++.+|++|..++.|++
T Consensus 173 ----------------~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 173 ----------------LVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ----------------eeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEE
Confidence 678999999999988765 89999887776655553 2446666664 6788999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEE--ccCCCEEEEEcCCCeEEEEECCCC
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~--spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
||... ..+...+.+|...|..+.+ .|++.+|++++.||.|+|||+...
T Consensus 234 ~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99976 7899999999999999884 678899999999999999998765
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.5e-23 Score=198.87 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=188.1
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEe
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNV 281 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (475)
+.+...-.+++|+.. .+..|...++++.+ -..++ .+++|+.|..+.+|.+.....+..+. |..+|.
T Consensus 8 m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~--~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe- 74 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTR---------EFVAHSAAVGCLKI--RKSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE- 74 (825)
T ss_pred ceeeeeeccccccch---------hhhhhhhhhceeee--eccce-eeccCCCceeeccccccCCchhheeeccCCcce-
Confidence 344444456666643 33457778888887 45555 49999999999999997776666655 889999
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
++.|++...+|++|+.+|.|++||+..++.+++|.||...+.++.|+|-+.+
T Consensus 75 ----------------------------Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 75 ----------------------------SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred ----------------------------eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+|+|+.|+.+++||++. ..+.+.+.+|...|..++|+|+|++++.++.|..++|||+..|+....+..|.+.+..+.|+
T Consensus 127 ~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred eccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 99999999999999987 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCcc
Q 011924 442 PDTESLFIGVWDRTYG 457 (475)
Q Consensus 442 pdg~~l~~~~~D~~~~ 457 (475)
|..-.|+.|+.|+++.
T Consensus 206 p~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVR 221 (825)
T ss_pred chhhhhccCCCCceee
Confidence 9998999999998875
No 129
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.3e-20 Score=160.61 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=176.3
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.+.+|..+++-|.+ +.+|.. |.+|+.|.++.+|-...|+.+.++. |.+.|-
T Consensus 5 ~l~GHERplTqiKy--N~eGDL-lFscaKD~~~~vw~s~nGerlGty~GHtGavW------------------------- 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKY--NREGDL-LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW------------------------- 56 (327)
T ss_pred ccccCccccceEEe--cCCCcE-EEEecCCCCceEEEecCCceeeeecCCCceEE-------------------------
Confidence 45679999999999 999995 9999999999999888888888888 889998
Q ss_pred eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCC-
Q 011924 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNL- 379 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~- 379 (475)
|+.++-+.+.+++|+.|.+++|||+.+|+++..++ ...+|..+.|+++|++++.... .+.|.++|++..
T Consensus 57 ----~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 57 ----CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ----EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 99999999999999999999999999999999998 5678999999999998887754 467999999842
Q ss_pred -----CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 380 -----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 380 -----~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
..|...+..+...++.+.|+|-+++|++|..+|.|.+||+++|+.... ...|...|+.|.||||..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 357888888889999999999999999999999999999999865544 45688999999999999999999999
Q ss_pred CCcc
Q 011924 454 RTYG 457 (475)
Q Consensus 454 ~~~~ 457 (475)
.+..
T Consensus 212 ttak 215 (327)
T KOG0643|consen 212 TTAK 215 (327)
T ss_pred ccce
Confidence 7753
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=167.15 Aligned_cols=238 Identities=14% Similarity=0.195 Sum_probs=178.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee-----e---eeeccccEEeccCCceEE-------E
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----K---HFRFPWPVNVSSSYCIIL-------L 290 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~-----~---~~~~~~~v~~s~~~~~l~-------~ 290 (475)
..+.+|.+.|++++| +.+|+. |++++.|++|++|+++.+... + .+.|+..|.|+|+-..+. .
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEE--cCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 456789999999999 999997 999999999999999764322 1 233788899999987774 4
Q ss_pred EEEeeccc---ceEEEE-------------eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 291 CRLLNFMT---EKVIIC-------------LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 291 ~~v~d~~~---~~~~~~-------------~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
+++|..-. |....+ .-.+..+-+..+++++++++.|..|.||+++ |+.+..+......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 55554422 111111 0123456667788999999999999999998 999988887777778899
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC-------CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE--
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNL-------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-- 425 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~-- 425 (475)
.||+|+++|+++.---|++|.+--. -..+..+++|..+|..++|||+.+.+++.+.||.++|||+.-.+..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 9999999999999888999987421 1256778999999999999999999999999999999997532221
Q ss_pred -----EEE----eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeeccee
Q 011924 426 -----EQE----IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYS 469 (475)
Q Consensus 426 -----~~~----~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~ 469 (475)
+.. ....+....++.||.|..|+++. |+.-.++...++..+.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYP 366 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCccch
Confidence 111 11234566899999999998765 3333455555554443
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=175.48 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=178.6
Q ss_pred ceeEEEEEE----cCcEEEEEecCceEEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV----KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..+|++++| .-+++++|..-|+|=+|++...+. .--...+..|.++|+++.| +|.+...+++.|.||+||+-|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCCChhheeeeccCceeeeee
Confidence 348999999 347889999999999999953332 2224667789999999999 998877799999999999999
Q ss_pred CCCCeeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce-EE
Q 011924 264 MGKYQLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IA 341 (475)
Q Consensus 264 ~~~~~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~ 341 (475)
+++...-..+.. .....|+ .+.|+.+...++++..=|...+||+++++. ..
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs---------------------------~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFS---------------------------SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ecchhhHHHhhcCccceeee---------------------------eccccCCCccEEEeecccceEEEEeecCCccch
Confidence 987543222221 1122222 678888888888888888999999997654 66
Q ss_pred EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 342 SLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+.-|...|.+++++| ...+|||++.|++++|||+|+... +......|..+|.++.|||.|-.|++.+.|+.|+||
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 6777888999999999 678999999999999999986432 334455688899999999987679999999999999
Q ss_pred ECC---CCeeEEEEeccC----C--CeEEEEEcCCCCeEEEE
Q 011924 418 DVK---SGYEKEQEIDFF----G--EISGISFSPDTESLFIG 450 (475)
Q Consensus 418 d~~---~~~~~~~~~~~~----~--~i~~l~fspdg~~l~~~ 450 (475)
|.. ...+....+.|. . ......|.|+..++++|
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg 438 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVG 438 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEe
Confidence 974 222222333343 1 24467899999999988
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=200.60 Aligned_cols=238 Identities=15% Similarity=0.189 Sum_probs=194.7
Q ss_pred ceeEEEEEE--cC----cEEEEEecCceEEEEeCCC---CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV--KD----KLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~--~~----~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
..+...|+| .+ .+|+.|+.||.|.+|+... +...........|++.|..+.| ++....++++|+++|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcE
Confidence 346788888 22 3688899999999999875 2222223556789999999999 99888789999999999
Q ss_pred EEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC
Q 011924 260 RDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~ 335 (475)
.|||+...+.-.++. .+..|. +++|+. ....|++++.+|.+.|||++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~-----------------------------~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIK-----------------------------CLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccce-----------------------------EeccchhhhHHhhccCCCCCceecccc
Confidence 999997744333332 345566 999998 45677888999999999999
Q ss_pred CCceEEEeecCCC--CeEEEEEecCC-CEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEE
Q 011924 336 TGKTIASLCGHLD--FSFASAWHPNG-VTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATA 408 (475)
Q Consensus 336 ~~~~~~~l~~h~~--~v~~~~~sp~g-~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~ 408 (475)
..+++-.+..+.. .+..++|||+. ..+++++.|. .|.+||+|....+++++++|...|.++.|++.+ ++|+++
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 8888887776554 46789999954 5666666543 799999999899999999999999999999966 899999
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~D~~~~ 457 (475)
+.|+.|.+|+..+++.+..+......+..+.|+|... .+++++.||.+.
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 9999999999999999988887778899999999776 777889999886
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=175.45 Aligned_cols=234 Identities=16% Similarity=0.209 Sum_probs=187.6
Q ss_pred ccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 185 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 185 ~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
++.....|++|.| ...+|+++|.||.+++|.++...... .+...-...+|.+.+| .|+|...+++++....++.|
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l~~fPi~~a~f--~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHLEKFPIQKAEF--APNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeeeccCccceeee--cCCCceEEEecccceEEEEe
Confidence 3445668999999 67899999999999999998655432 2333445667888888 99999668888899999999
Q ss_pred ECCCCeeeeeee---c-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc
Q 011924 263 DMGKYQLSKHFR---F-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 263 d~~~~~~~~~~~---~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
|+.+.+....-. . ...+. ...+||++++|+..|..|.|+|.-..++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e-----------------------------~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSME-----------------------------RFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred eccccccccccCCCCcccchhh-----------------------------eeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 998876543222 1 12333 67889999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+.+++ -.+.|..++|+.+|+.|++++.+|.|.+||++. ..+++.+....+ .-++++.|++|.+||+|+..|.|.||
T Consensus 337 li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 337 LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEe
Confidence 998888 577899999999999999999999999999987 577777765321 23567788999999999999999999
Q ss_pred ECCC------CeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 418 DVKS------GYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 418 d~~~------~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
|..+ .+++..+......|++|.|+||++.|++++.
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9654 2344444455678999999999999998754
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-20 Score=174.32 Aligned_cols=217 Identities=15% Similarity=0.200 Sum_probs=175.4
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
..+.++.|+.. -.+++++|...+|....++ .+|. -.|+|+.| +|.+|++||.||.|.+|
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHY----------------Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHY----------------QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHH--Hhhc----------------cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 33444444443 4689999999988775554 2221 26999999 89999999999999999
Q ss_pred eCCC------CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 215 HLDR------PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 215 ~~~~------~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
.+.. .........+.+|.-+|+.+.+-+.+... .++++|.|.++++||+..+.++.++.++.++.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-------- 221 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-------- 221 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEecCCcce--------
Confidence 8732 11222346778899999999984443344 49999999999999999999999999999999
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC----------------CceEEEeecCCC--Ce
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT----------------GKTIASLCGHLD--FS 350 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~v 350 (475)
+++++|-++.+.+|+.+|.|.+.++.. +..+..+.||.+ .|
T Consensus 222 ---------------------av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 222 ---------------------AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred ---------------------eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 999999999999999999999887642 224556788998 99
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 351 FASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
+|++.+-||.+|++|+.||.|+|||+.. .++++++....++|+.+.+.|--+
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccccceeEeecccc
Confidence 9999999999999999999999999976 788888887788999999977443
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=182.13 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=190.9
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-C
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~ 267 (475)
.+.++++ +++.|++|..-|+|+|+++...... .....|.+.|.|+.+.+-.-+..+|++++.|.-|.|||+.. .
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~---~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT---CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhh---hheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4556665 9999999999999999999765433 45667999999999954444566799999999999999954 5
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC--cEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.++.++. |...|+ ++.|-..| ..+++++.|..|..--.+.......+.
T Consensus 538 ~l~qtld~HSssIT-----------------------------svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSIT-----------------------------SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred chhhhhccccccee-----------------------------EEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 5666666 788888 99998877 778888888876543322111111111
Q ss_pred c-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 345 G-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 345 ~-----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
. ....++.++..|..++++++++|+.|+|||+.+ ++.++.+++ |.+....+...|.|.|||+.+.|.++.|
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 1 235689999999999999999999999999987 888888886 5567779999999999999999999999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+|.-+|+++.+..+|...|+++.|++|.+.|++.+.|+-+
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 9999999999999999999999999999999999999755
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=5.2e-21 Score=172.77 Aligned_cols=226 Identities=13% Similarity=0.216 Sum_probs=172.7
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceE----
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSF---- 223 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~---- 223 (475)
+.|+.|++|+.........+.. +.+.|..++++...++++|.|.+|+.|.++.+....
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~A------------------H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~ 147 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKA------------------HEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGK 147 (433)
T ss_pred ccCceEEEEehhhhhhhheeec------------------ccCceeeEEecccceEEecCCcceeeeeccCCcceeeecc
Confidence 4579999999776554433321 233677777766777788888888888743211000
Q ss_pred -------------------------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee
Q 011924 224 -------------------------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (475)
Q Consensus 224 -------------------------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (475)
....+.-....+.++.| +|....+|++|..|++|.+||+++..+++.
T Consensus 148 s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF--NPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec--CCCcchheeeeccCCceEEEecccCCccce
Confidence 00111111234667777 898888899999999999999999998887
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~ 351 (475)
.......+ .++|+|.+-.+++++.|..++.+|++. ..++....+|...|.
T Consensus 226 Vi~~mRTN-----------------------------~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 226 VILTMRTN-----------------------------TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred eeeecccc-----------------------------ceecCccccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence 76665666 899999998999999999999999985 457888899999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+++|+|.|+-|++||.|.+||||.++. +.....+ .-.+..|.++.||-|.+|+++||.|+.|++|-....+
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~-~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNH-GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCC-CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999999999999999999999999976 3322222 2345689999999999999999999999999865443
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.9e-20 Score=170.16 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=163.5
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..|.+|+| ..+.|++|+.|.+|++||+...+.. .++..|.+.|.+++| +|....+|++|+.|++|.+.|++.
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEe--cCCCceEEEeccccceEEeeeccC
Confidence 46778888 5689999999999999999987766 666789999999999 888777899999999999999984
Q ss_pred -CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCC-CceEEEe
Q 011924 267 -YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASL 343 (475)
Q Consensus 267 -~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~-~~~~~~l 343 (475)
...-..++..+.|- .++|.| ....++++..||.++-+|+|. ++++.++
T Consensus 319 ~~~s~~~wk~~g~VE-----------------------------kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~ 369 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVE-----------------------------KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL 369 (463)
T ss_pred ccccCceEEeccceE-----------------------------EEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence 33344555677777 899999 555677788999999999995 5999999
Q ss_pred ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECC
Q 011924 344 CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVK 420 (475)
Q Consensus 344 ~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~ 420 (475)
+.|.+.|.++++++ ...+++|++.|++|++|++..... .+..-.-..+...|.++.|+-. +||.|+..+.++|||+.
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 99999999999998 567899999999999999975222 2222222334567888888664 67788888899999998
Q ss_pred CCeeE
Q 011924 421 SGYEK 425 (475)
Q Consensus 421 ~~~~~ 425 (475)
+...+
T Consensus 450 ~~~~V 454 (463)
T KOG0270|consen 450 TNSPV 454 (463)
T ss_pred cChhH
Confidence 76543
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.4e-19 Score=159.97 Aligned_cols=240 Identities=13% Similarity=0.076 Sum_probs=182.5
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
..++.|+.|..... |.+.|. ....+..+|++++| +|..+++|+.|+++++||+.++..
T Consensus 47 SWD~tVR~wevq~~---------g~~~~k-------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~---- 106 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNS---------GQLVPK-------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV---- 106 (347)
T ss_pred ccCCceEEEEEecC---------Ccccch-------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe----
Confidence 45799999986542 111110 12234458999999 899999999999999999987753
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEE-------EEEEeeccc
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL-------LCRLLNFMT 298 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~-------~~~v~d~~~ 298 (475)
.....|.++|..+.|...+.- .+|++||.|++|+.||++....+.++..+..+........++ .+.++++..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeeeecccceeEEEEecCCCc-ceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 345578999999999755443 369999999999999999998888888776665333332222 356777765
Q ss_pred ceEEEE------eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEeecCCC---------CeEEEEEecCCCE
Q 011924 299 EKVIIC------LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLD---------FSFASAWHPNGVT 361 (475)
Q Consensus 299 ~~~~~~------~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~~h~~---------~v~~~~~sp~g~~ 361 (475)
+..... ..-++|++..++....+.|+-.|.+.|-.+..+ +.-.+++.|.. .|.+++|||.-..
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 543321 115679999898888899999999999988876 44445666652 4678899998889
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
|+|++.||+..+||-.. ...+.....+..+|++.+|+.+|.++|.|.
T Consensus 266 lvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999865 566777788999999999999999888764
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7e-20 Score=166.32 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=172.9
Q ss_pred eEEEEEE-cCcEEEEEecCceEEEEeCCCC-------C------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRP-------G------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~-------~------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
+|....+ +..+.++=+..|.|.||++... + ......++.+|...=.+|+| ||-..-.+++|..-
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGRLLSGDCV 233 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccccccCccc
Confidence 3444444 5667777789999999998531 1 11123455677777788999 77433348888777
Q ss_pred CeEEEEECCCCeeee---ee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEE
Q 011924 257 CGVRDFDMGKYQLSK---HF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLL 331 (475)
Q Consensus 257 g~v~iwd~~~~~~~~---~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~i 331 (475)
+.|++|...++.... .| .|...|. .++||| ....|++|+-||+|+|
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-----------------------------DLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVE-----------------------------DLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred cceEeeeeccCceeecCccccccccchh-----------------------------hhccCCccCceEEeeecCceEEE
Confidence 889999988765432 11 2666676 999999 5668899999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC--CCceEEEEecCCCceEEEEEccC-CCEEE
Q 011924 332 VDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSD-GRYMA 406 (475)
Q Consensus 332 wd~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~spd-g~~la 406 (475)
||+|.+. .....+.|.+.|..+.|+-.-.+||+|+.||+++|||+|+ .++++..++-|..+|+++.|+|. ...|+
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 9999872 2223378999999999999878999999999999999985 35689999999999999999994 46788
Q ss_pred EEcCCCeEEEEECCCCe----------------eEEEEeccC--CCeEEEEEcCCCC-eEEEEEecC
Q 011924 407 TAEPADFVHVYDVKSGY----------------EKEQEIDFF--GEISGISFSPDTE-SLFIGVWDR 454 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~----------------~~~~~~~~~--~~i~~l~fspdg~-~l~~~~~D~ 454 (475)
+++.|.+|.|||+..-. +.+-+..|. ..+..+.|++.-. +|++.+.||
T Consensus 365 asg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred eccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 88899999999985321 112233454 3688899998654 555666665
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=8.1e-20 Score=165.93 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=155.1
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~- 267 (475)
=++|+| ....|++|...+.|++|...++....-..-+.+|+..|-.|+| ||..+.+|++||-||+|+|||++.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCC
Confidence 346666 4567899999999999999887766555666779999999999 9998889999999999999999887
Q ss_pred --eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC---CCceEEE
Q 011924 268 --QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIAS 342 (475)
Q Consensus 268 --~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~~ 342 (475)
.++..-.|...|+ .++|+..-.+||+|+++|+++|||++ .++++..
T Consensus 292 ~~~~~~~kAh~sDVN-----------------------------VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVN-----------------------------VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred ccceeEeeccCCcee-----------------------------eEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 3444444888999 99999988899999999999999998 5678999
Q ss_pred eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---------------eEEEEecC--CCceEEEEEccCC-C
Q 011924 343 LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---------------SVAVLKGN--LGAIRSIRYTSDG-R 403 (475)
Q Consensus 343 l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---------------~~~~~~~~--~~~v~~l~~spdg-~ 403 (475)
++-|..+|+++.|+| +...|++++.|.+|.|||+.-... +.+.+--| ...+..+.|++.- -
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 999999999999999 567888899999999999853110 11111112 2357788898854 3
Q ss_pred EEEEEcCCCeEEEEE
Q 011924 404 YMATAEPADFVHVYD 418 (475)
Q Consensus 404 ~la~~~~dg~i~iwd 418 (475)
+|++.+.|| +.||-
T Consensus 423 ~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 423 LLVSTAIDG-FNVFK 436 (440)
T ss_pred eEEEecccc-eeEEE
Confidence 777777787 55553
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.5e-20 Score=170.97 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=175.9
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (475)
...++++||..|.|+|||+.. ..|.+...+|.+.|+++.+ +....+ +++++..|-|.|..+.++.....|.++
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~Y--N~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDY--NNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEe--cCCcce-eEEeccCCcEEEEecccCccccceecCC
Confidence 447999999999999999984 4446888899999999998 666665 999999999999999998888888854
Q ss_pred -ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEE
Q 011924 277 -WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFAS 353 (475)
Q Consensus 277 -~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l-~~h~~~v~~~ 353 (475)
..|+ .+.++|..+ +|.+++++|.|.+||+....++..+ +.|..+...+
T Consensus 164 gqsvR-----------------------------ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 164 GQSVR-----------------------------LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI 214 (673)
T ss_pred CCeEE-----------------------------EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc
Confidence 4455 789999655 5567899999999999877776544 5799999999
Q ss_pred EEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEecc
Q 011924 354 AWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDF 431 (475)
Q Consensus 354 ~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~ 431 (475)
||+| +..+|++.+.|..|.+||++. ......+. ...+.+.++|+++|.+|+.|...|.|..||++..+ ++..+..|
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred eecCCccceEEEecccceEEEeeccc-ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 9999 778999999999999999985 55555554 34588999999999999999999999999998654 56667789
Q ss_pred CCCeEEEEEcCCC
Q 011924 432 FGEISGISFSPDT 444 (475)
Q Consensus 432 ~~~i~~l~fspdg 444 (475)
...|++++|-|.-
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998764
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.3e-19 Score=158.26 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=184.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
-.|++|.| .++.|+++++||.+++|++.... ......|..++...+| .+.. .+++|+-||.|+.+|+.++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F--~d~~--~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAF--ADES--TIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeec--cCCc--eEEEeccCceEEEEEecCC
Confidence 47999999 56677777899999999998653 2445567888999998 5543 3899999999999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+....-.|..++. |+..++-...+++|+.|+.|++||.+....+..+.. .
T Consensus 86 ~~~~igth~~~i~-----------------------------ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~ 135 (323)
T KOG1036|consen 86 NEDQIGTHDEGIR-----------------------------CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-G 135 (323)
T ss_pred cceeeccCCCceE-----------------------------EEEeeccCCeEEEcccCccEEEEecccccccccccc-C
Confidence 8888788999999 999999888999999999999999997655555553 3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC----
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG---- 422 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~---- 422 (475)
..|+++.. .|+.|+.|+.+..|.+||+|+...+...-. .-.-.++++++-|++.=.++++-+|.|.+=.+...
T Consensus 136 kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 136 KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 47887766 678999999999999999998665542221 12347899999998888889999999888655443
Q ss_pred eeEEEEeccC---------CCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 423 YEKEQEIDFF---------GEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 423 ~~~~~~~~~~---------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.....+..|. -+|.+|+|+|--..|++|+.||.+..+=-+
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 3444555554 379999999999999999999877544333
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=1.7e-17 Score=164.73 Aligned_cols=259 Identities=16% Similarity=0.115 Sum_probs=197.8
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
|+++.- .=+.++.|+.+|.+.+|++.+.+.. .++.++.+.|+++.- +|-=.. ++.|..+|+|.+++++.++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieq--sPaLDV-VaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQ--SPALDV-VAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEE---EEecccccceeEecc--CCcceE-EEEeccCceEEEEEcccCc
Confidence 666655 3367899999999999999988776 455566688999887 887775 9999999999999999999
Q ss_pred eeeeeecc-ccEE---eccCCceE-------EEEEEeecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 269 LSKHFRFP-WPVN---VSSSYCII-------LLCRLLNFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 269 ~~~~~~~~-~~v~---~s~~~~~l-------~~~~v~d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
.+..|+++ ++|+ |..+|..+ +.+-+||+...+.+.... .+....|-|....+++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999976 4444 77777766 378999999988776554 33455666666677777766666555
Q ss_pred ECC--CC--ceEE-------------------------------------------------------------------
Q 011924 333 DSM--TG--KTIA------------------------------------------------------------------- 341 (475)
Q Consensus 333 d~~--~~--~~~~------------------------------------------------------------------- 341 (475)
=.. .| +.++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 222 11 0000
Q ss_pred ------------------------------------------Eee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 342 ------------------------------------------SLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 342 ------------------------------------------~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
.|. .....+.+++.++.|++.+.|...|+|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 000 011346788899999999999999999999
Q ss_pred ECCCCCceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---------------------------
Q 011924 375 DLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--------------------------- 424 (475)
Q Consensus 375 d~~~~~~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~--------------------------- 424 (475)
++.. +-....+ ..|.++|+.++...-++.+++++.+|.+.+||.++...
T Consensus 476 NmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 476 NMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred Eccc-CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 9976 5556666 47889999999998889999999999999999876531
Q ss_pred --------------EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 --------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 --------------~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++.+.+|.+.|++++|||||++|++++.|++++
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 223336888999999999999999999998875
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.9e-18 Score=163.59 Aligned_cols=269 Identities=13% Similarity=0.156 Sum_probs=206.7
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceE
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGEL 211 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i 211 (475)
+.|.++...+.|... .+++|-+|+...+=..+ ..+.+.....|-+++| ++..|++.+.+|.|
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~----------------~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE----------------PVIHGPEDRSIESLAWAEGGRLFSSGLSGSI 92 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceee----------------EEEecCCCCceeeEEEccCCeEEeecCCceE
Confidence 344455555555553 46788889876642221 1123334457999999 79999999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCII 288 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l 288 (475)
.-||+.+.+.. .......+.|+++++ +|.+.. ++.|+.||.+..++...+....... ....+-
T Consensus 93 ~EwDl~~lk~~---~~~d~~gg~IWsiai--~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL-------- 158 (691)
T KOG2048|consen 93 TEWDLHTLKQK---YNIDSNGGAIWSIAI--NPENTI-LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL-------- 158 (691)
T ss_pred EEEecccCcee---EEecCCCcceeEEEe--CCccce-EEeecCCceEEEEecCCceEEEEeecccccceEE--------
Confidence 99999987766 445566788999999 999986 8888899988888887776654433 234455
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEEecCCC
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--------GHLDFSFASAWHPNGV 360 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--------~h~~~v~~~~~sp~g~ 360 (475)
+++|+|++..++.|+.||.|++||...+..++... +...-|+++.|-.+ .
T Consensus 159 ---------------------slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~ 216 (691)
T KOG2048|consen 159 ---------------------SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-S 216 (691)
T ss_pred ---------------------EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-C
Confidence 99999999999999999999999999988776222 12334667777644 5
Q ss_pred EEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---E-EEEeccCCCeE
Q 011924 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---K-EQEIDFFGEIS 436 (475)
Q Consensus 361 ~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~---~-~~~~~~~~~i~ 436 (475)
.|++|...|+|.+||... +..+..+..|.+.|.+++..+++.++.+++.|+.|.-|...+... . .....|...|.
T Consensus 217 tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccce
Confidence 799999999999999977 888999999999999999999999999999999998888766532 1 12234667899
Q ss_pred EEEEcCCCCeEEEEEecCCcc
Q 011924 437 GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++..++ .|++|+.|.++.
T Consensus 296 s~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 296 SMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred eeeeecc--eEEecceeeEEE
Confidence 9999887 899999887653
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=3e-19 Score=157.35 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=158.7
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee----eeeccccEEeccCCceEEEEEEeecccceEE
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK----HFRFPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
+...|.+.|+++.+ .+....++++|+.||.|.+||++...... ..++...|. ..-.-
T Consensus 38 ~~r~HgGsvNsL~i--d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~-----------------~~h~~ 98 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQI--DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA-----------------KQHEN 98 (397)
T ss_pred eeccCCCccceeee--ccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc-----------------ccCCc
Confidence 33467889999999 66655569999999999999997533110 000000000 00000
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCC
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~ 378 (475)
.+...|..+.|-| |...+.+++-|.++++||..+-+....++ -++.|++-+|+| .-.++|+|..+-.|++.|+..
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 0111333888999 77789999999999999999988887777 577899999999 345788888899999999977
Q ss_pred CCceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECCCC-eeEEE--------------EeccCCCeEEEEEcC
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG-YEKEQ--------------EIDFFGEISGISFSP 442 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~i~~l~fsp 442 (475)
+...+++.+|.+.|.++.|+|... .||+|+.||.|++||++.. -+... -..|.+.+.+++|+.
T Consensus 178 -Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 178 -GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred -CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 899999999999999999999765 6789999999999999753 12111 224678899999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|.+|++.+.|..++
T Consensus 257 d~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 257 DARYLASCGTDDRIR 271 (397)
T ss_pred cchhhhhccCccceE
Confidence 999999988877664
No 146
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=6.8e-19 Score=166.42 Aligned_cols=261 Identities=15% Similarity=0.236 Sum_probs=196.7
Q ss_pred eeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEE
Q 011924 135 NLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICK 214 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw 214 (475)
.+.|.+....+|.++|..+..|+..+....++++.-....|...|++....+-.. ....|+.++.||.+.+.
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~--------~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGK--------GSDTLLICSNDGRFVIL 90 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCC--------CcceEEEEcCCceEEEe
Confidence 3446666666666778899999988888877777655555555555532222111 23567778889999887
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-eccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~s~~~~~l~~~~v 293 (475)
+-. .++. +....|.+.+.+-.| +|+|.- |++++.||.|++|.-.. -+..++ +...+|.
T Consensus 91 ~k~-~rVE---~sv~AH~~A~~~gRW--~~dGtg-Llt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~------------- 149 (737)
T KOG1524|consen 91 NKS-ARVE---RSISAHAAAISSGRW--SPDGAG-LLTAGEDGVIKIWSRSG-MLRSTVVQNEESIR------------- 149 (737)
T ss_pred ccc-chhh---hhhhhhhhhhhhccc--CCCCce-eeeecCCceEEEEeccc-hHHHHHhhcCceeE-------------
Confidence 633 2222 455678999999999 999997 88888999999998643 222222 3667788
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
|++|.|+.+.++.+. .+.+.|=-+.....+-..+.|.+-|.++.|+|..+++++|+.|-..+|
T Consensus 150 ----------------c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 150 ----------------CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred ----------------EEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 999999888777663 456777777777777788999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
||.. +.++..-..|.-+|++++|.|+ +.++.++.+ ++++ .....|.|..++|||||..+++|...
T Consensus 213 WD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 213 WDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred eccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccC
Confidence 9984 7788888889999999999999 666666643 3441 12245789999999999999999887
Q ss_pred CCc
Q 011924 454 RTY 456 (475)
Q Consensus 454 ~~~ 456 (475)
|.+
T Consensus 278 G~v 280 (737)
T KOG1524|consen 278 GQL 280 (737)
T ss_pred ceE
Confidence 754
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.9e-19 Score=160.80 Aligned_cols=234 Identities=16% Similarity=0.221 Sum_probs=175.5
Q ss_pred CceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--------cccc
Q 011924 208 QGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--------FPWP 278 (475)
Q Consensus 208 dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~ 278 (475)
.|...+.-+...+ ......+..+|.++|..++| +|-+...+++||.|.+|.||.+..+.+.+.+. |...
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w--~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr 133 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDW--CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR 133 (472)
T ss_pred CcceeecccccccccCCCCCCccCcccccccccc--CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee
Confidence 3455555554333 12123456789999999999 99888889999999999999997655443332 4444
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
|. .++|+| -.+.|++++.|..|.+|++.+|..+.++. |.+.|++++|+-
T Consensus 134 Vg-----------------------------~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 134 VG-----------------------------LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR 183 (472)
T ss_pred EE-----------------------------EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc
Confidence 44 899999 45678889999999999999999998888 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEc---CCCeEEEEECCCCeeEEEE--ecc
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQE--IDF 431 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~--~~~ 431 (475)
+|.+|+|.+.|+.|||||.|. +..+..-.+|.+ .-..+.|-.+|.++.+|- .+..+.+||..+-.....+ .+.
T Consensus 184 dGs~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred CCceeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc
Confidence 999999999999999999998 788887777765 234566778898555553 3578999997765544333 234
Q ss_pred CCCeEEEEEcCCCCeEEE-EEecCCcceEEEEEeecceeeeccc
Q 011924 432 FGEISGISFSPDTESLFI-GVWDRTYGSLLEYGRCRNYSYLDSL 474 (475)
Q Consensus 432 ~~~i~~l~fspdg~~l~~-~~~D~~~~~ll~~~~~~~~~~l~~~ 474 (475)
...|.-.-|.||...|.. |-.|+.|+-.--.......+||+.+
T Consensus 263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 456777778999988875 5567777544444455557888754
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=2.1e-18 Score=154.32 Aligned_cols=222 Identities=17% Similarity=0.178 Sum_probs=173.8
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---- 274 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 274 (475)
.-+||+||.-|.|+|.|+..... .....+|...|+.|.+ +|....+++++|.|.+||+|++++..++..|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~---~~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQC---SKNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhhh---ccceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 56899999999999999876543 3667789999999999 99988889999999999999999999999887
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE--------------
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-------------- 340 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~-------------- 340 (475)
|...|. ++.|+++|.+++++|.|..+.+|++...+..
T Consensus 180 HrdeVL-----------------------------SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 180 HRDEVL-----------------------------SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred ccCcEE-----------------------------EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 566777 9999999999999999999999999732110
Q ss_pred --------E------EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-------------eEEEEecCCCce
Q 011924 341 --------A------SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-------------SVAVLKGNLGAI 393 (475)
Q Consensus 341 --------~------~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-------------~~~~~~~~~~~v 393 (475)
. +-.-|..+|-|+.|- |.++++-|-++.|..|-.-...+ .+..+.-.+..|
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 0 112367777777773 67899988889999998722121 223333344556
Q ss_pred EEEE--EccCCCEEEEEcCCCeEEEEECCCCeeEE-EEecc---CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 394 RSIR--YTSDGRYMATAEPADFVHVYDVKSGYEKE-QEIDF---FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 394 ~~l~--~spdg~~la~~~~dg~i~iwd~~~~~~~~-~~~~~---~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+-+. |.|-+++||.|...|.|.+||++...+.. ....| ...|...+||.||..|+..+.|+++
T Consensus 309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 6655 46778999999999999999998765532 22222 2579999999999999999999776
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=9.3e-17 Score=151.15 Aligned_cols=227 Identities=15% Similarity=0.178 Sum_probs=161.9
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeC
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~ 216 (475)
|......|.--+++.+.+|+..+.+.++..- .+...|.+|+. ....|++|+.|..|..||-
T Consensus 254 F~engdviTgDS~G~i~Iw~~~~~~~~k~~~------------------aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 254 FLENGDVITGDSGGNILIWSKGTNRISKQVH------------------AHDGGVFSLCMLRDGTLLSGGKDRKIILWDD 315 (626)
T ss_pred EcCCCCEEeecCCceEEEEeCCCceEEeEee------------------ecCCceEEEEEecCccEeecCccceEEeccc
Confidence 3333333333467888899886555443221 24457888888 5556777999999999983
Q ss_pred CCCCce--------------------E-----------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 217 DRPGVS--------------------F-----------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 217 ~~~~~~--------------------~-----------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+-.+.. + ...+..+|....+.++. +|+.+. +++++.|+++
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~--hps~~q-~~T~gqdk~v 392 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT--HPSKNQ-LLTCGQDKHV 392 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc--CCChhh-eeeccCcceE
Confidence 211100 0 01122334445566666 666654 7777777777
Q ss_pred EEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 260 RDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
++|+ ..++..+.....++. |+.|+|.| .+|+|...|...+.|..+...
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~-----------------------------~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAE-----------------------------CADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcc--CCceeEEEEecCcee-----------------------------EeeccCcc-eEEEeeccceEEEEeccccee
Confidence 7777 444444444555666 99999999 999999999999999998665
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
+..-. ...++.+++|+|+|.+||.|+.|+.|.||-+...+....... .+..+|+.+.||+|+++|.+-+.|-.|..|.
T Consensus 441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 55444 488999999999999999999999999999976555444332 3347999999999999999999998899994
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.1e-18 Score=163.24 Aligned_cols=264 Identities=16% Similarity=0.091 Sum_probs=192.0
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|.|++. .|.+|++|+.||+|+||.+.+.... .+.. -.+.|.+|+| +|.++.-++++.....+.+-+..
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv---r~~~-~d~~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV---RTVQ-FDSEIRSVAW--NPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE---EEEe-ecceeEEEEe--cCCCCceeEEEEecCceEEeCcc
Confidence 3457888888 8999999999999999999875543 2222 2347999999 88776545544455555544332
Q ss_pred CCe---------e--------------------------------eeeeeccccEEeccCCceEEEE---------EEee
Q 011924 266 KYQ---------L--------------------------------SKHFRFPWPVNVSSSYCIILLC---------RLLN 295 (475)
Q Consensus 266 ~~~---------~--------------------------------~~~~~~~~~v~~s~~~~~l~~~---------~v~d 295 (475)
-|. + +.+......+.++..|..++++ -|..
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 110 0 0111122334456666666543 2333
Q ss_pred cccceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 011924 296 FMTEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371 (475)
Q Consensus 296 ~~~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v 371 (475)
+..+.....+ ..++++.|+|...+|++++. ..|+|||+..+..+..+......|..++.||.|..|+.|+.|+.+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 3333322111 15678999998888888765 469999998877777776667789999999999999999999999
Q ss_pred EEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC------CC---eeEEEEeccCC----CeEEE
Q 011924 372 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK------SG---YEKEQEIDFFG----EISGI 438 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~------~~---~~~~~~~~~~~----~i~~l 438 (475)
..+|+.-..++.+++..|..++++++|++.-.++|+|+.||++.||--. .. .++..+.+|.. .|...
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 9999987788999999999999999999999999999999999998421 11 23455556654 48889
Q ss_pred EEcCCCCeEEEEEecCCcce
Q 011924 439 SFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ 458 (475)
.|+|.-.+|++++.|++++-
T Consensus 712 ~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred cccCCCceEEecCCCceEEe
Confidence 99999999999999998853
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=5.9e-18 Score=148.86 Aligned_cols=247 Identities=16% Similarity=0.154 Sum_probs=192.0
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-------CeEEEEECCCCe---------ee
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------CGVRDFDMGKYQ---------LS 270 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-------g~v~iwd~~~~~---------~~ 270 (475)
.+++|.+..++..+.....+.+.++.+.|+.|+- +|....+|+++.++ ..+.||.+.... ++
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las--~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLAS--SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhc--CCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 4688999998887776667888899999999999 99988888887653 246799885421 22
Q ss_pred eeee-----ccccEEeccCCceEE-----EEEEeecccceEEEE----------eeeeeeEEECC--CCcEEEEEeCCCc
Q 011924 271 KHFR-----FPWPVNVSSSYCIIL-----LCRLLNFMTEKVIIC----------LLCLQHSSQSP--DGKLLIIVGDNPD 328 (475)
Q Consensus 271 ~~~~-----~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~----------~~~i~~~~~sp--~g~~l~~~~~dg~ 328 (475)
..+. ....|.|.|++..++ .+.+|++..+..+.. ...+++-+||| +|+.+++. .+++
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~t 194 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDST 194 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCc
Confidence 2222 124566888888776 467999887665321 11466888999 88888876 5788
Q ss_pred EEEEECCCCceEEEee-cCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEE
Q 011924 329 GLLVDSMTGKTIASLC-GHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYM 405 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g-~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l 405 (475)
+..||+++.+....+. .|...|..+.|+|+. .+|+|++.||.|+|||.|+...++..+.+|...|++++|+|. .++|
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9999999888766665 588899999999965 578899999999999999999999999999999999999995 4688
Q ss_pred EEEcCCCeEEEEECCCCe-----------------------------eEEEEeccCCCeEEEEEcCCCCeEEEE-EecCC
Q 011924 406 ATAEPADFVHVYDVKSGY-----------------------------EKEQEIDFFGEISGISFSPDTESLFIG-VWDRT 455 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~ 455 (475)
++++.|..|.+|...+-. .+.++..|...|.+++||.-..++++. +.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 899999999999754211 123455688899999999988888765 88875
Q ss_pred c
Q 011924 456 Y 456 (475)
Q Consensus 456 ~ 456 (475)
+
T Consensus 355 v 355 (370)
T KOG1007|consen 355 V 355 (370)
T ss_pred E
Confidence 4
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=7.7e-17 Score=157.06 Aligned_cols=299 Identities=16% Similarity=0.197 Sum_probs=202.7
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc---EEEEEecCceEEEEe
Q 011924 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK---LLVAGGFQGELICKH 215 (475)
Q Consensus 141 ~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~---~lvsg~~dg~i~vw~ 215 (475)
....+.+.....|.+|++... ..+..+.||. .+|+|+.+ ... ++++|+.||.|++|.
T Consensus 24 ~~~~vafGa~~~Iav~dp~k~--~i~t~l~GH~----------------a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 24 PGGLVAFGAGPAIAVADPEKI--LIVTTLDGHV----------------ARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred ccceEEecCCceEEEeCcccc--eeEEeccCCc----------------cceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 334455566678888887654 3344455543 36888888 333 799999999999999
Q ss_pred CCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeee------ccccEEeccC-Cc
Q 011924 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFR------FPWPVNVSSS-YC 286 (475)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~------~~~~v~~s~~-~~ 286 (475)
++ .....+...+.+|...+.|+.- .-. ...+.+.|+++++|+.+..+ +...+. .+-.+.+.++ +.
T Consensus 86 l~-~~~~~~i~~~~g~~~~~~cv~a----~~~-~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 86 LR-DEYLIKIYTIQGHCKECVCVVA----RSS-VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT 159 (764)
T ss_pred Ee-ehheEEEEeecCcceeEEEEEe----eee-EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence 98 3445556666667766655533 221 12223689999999995544 222222 1222223342 22
Q ss_pred eEE-------EEEEeecccceEE------EEeeeeeeEEECCCC---cEEEEEeCCCcEEEEECCCCc------------
Q 011924 287 IIL-------LCRLLNFMTEKVI------ICLLCLQHSSQSPDG---KLLIIVGDNPDGLLVDSMTGK------------ 338 (475)
Q Consensus 287 ~l~-------~~~v~d~~~~~~~------~~~~~i~~~~~sp~g---~~l~~~~~dg~i~iwd~~~~~------------ 338 (475)
.+. .+.++....++-. .+...|.+++|...+ -+|+++++|..|+||.+.-+.
T Consensus 160 ~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t 239 (764)
T KOG1063|consen 160 FLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT 239 (764)
T ss_pred EEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc
Confidence 221 3444444432211 122267788887643 478899999999999875221
Q ss_pred ---------eE----------EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---c---eEEEEecCCCce
Q 011924 339 ---------TI----------ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---E---SVAVLKGNLGAI 393 (475)
Q Consensus 339 ---------~~----------~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~---~~~~~~~~~~~v 393 (475)
.. ..+.||.++|+++.|+|.+..|+++|.|.++.+|-..... . .+-...+..+..
T Consensus 240 ~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 240 TLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred cccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccce
Confidence 11 1234899999999999999999999999999999876521 1 122223344567
Q ss_pred EEEEEccCCCEEEEEcCCCeEEEEECCCC---eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 394 RSIRYTSDGRYMATAEPADFVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 394 ~~l~~spdg~~la~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
....|+|++..+++-+.-|..++|-.+.. .....+.+|.+.|.+++|+|.|++|++.+-|.+.+-+..++
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 88999999999999999999999984332 23445668999999999999999999999999988666663
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1e-17 Score=153.88 Aligned_cols=254 Identities=18% Similarity=0.214 Sum_probs=172.3
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCC------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+.+|.++.+ ..+.|++||.|..|++|.+.... .......+..|...||++.| +|+|.. +++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~gel-LASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGEL-LASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcCe-eeecCCCceE
Confidence 347888888 34489999999999999886433 12224556789999999999 999995 9999999999
Q ss_pred EEEECCCCeee------eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 260 RDFDMGKYQLS------KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 260 ~iwd~~~~~~~------~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.+|-...-+.. ...+..+-+. -. ...+...+..++|+|++..+++++-|..+++||
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~--------------k~----lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVK--------------KV----LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEE--------------EE----ecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 99976531110 0000001111 00 001222445899999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-----c--------------CC----
Q 011924 334 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-----G--------------NL---- 390 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-----~--------------~~---- 390 (475)
+..|+.+..+..|..++..++|.|-++++++-+.|...+++.+.. .+.+.... . |.
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 999999999999999999999999888888888777555555421 11000000 0 00
Q ss_pred CceEEEEEccCCCE------------------------------------------------------------------
Q 011924 391 GAIRSIRYTSDGRY------------------------------------------------------------------ 404 (475)
Q Consensus 391 ~~v~~l~~spdg~~------------------------------------------------------------------ 404 (475)
.-.+.++|+|+|.+
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 01122333333333
Q ss_pred ----EEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 405 ----MATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 405 ----la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+|.|+.+ .|.|||.++-.++....+ |...|+.++|++||.+|++.+.||-. +++.|....
T Consensus 311 yrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC-S~vtfe~~e 375 (434)
T KOG1009|consen 311 YRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC-SLVTFEPWE 375 (434)
T ss_pred cceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce-EEEEEcchh
Confidence 3344433 477888777666555443 77899999999999999999999744 566665433
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.7e-19 Score=183.36 Aligned_cols=245 Identities=16% Similarity=0.243 Sum_probs=188.1
Q ss_pred cceeEEecCCCe---EEE--ecCCeEEEEecCCC---CceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcE
Q 011924 133 LRNLVWATSKHD---VYL--MSHFSVIHWSSLTS---SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKL 201 (475)
Q Consensus 133 lr~l~~~~~~~~---v~~--~~~~~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~ 201 (475)
...|.|+.-+.. |.. ..+++|.+|++..- ....+ ++...+ +.++|..|.| .+++
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~------la~~~~---------h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV------LATKSK---------HTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH------Hhhhcc---------cCCceeeeeccccCCce
Confidence 356778766655 333 46799999998652 11222 222222 3348999999 6779
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEE
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVN 280 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~ 280 (475)
|++|+.+|+|.|||+.+....+... .....+.|.+|+| +..-..+|++++.+|.+.|||++..+.+..+. +.....
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 9999999999999998866543211 2234567999999 77777789999999999999999988777776 333222
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCC---CcEEEEECC-CCceEEEeecCCCCeEEEEE
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDN---PDGLLVDSM-TGKTIASLCGHLDFSFASAW 355 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d---g~i~iwd~~-~~~~~~~l~~h~~~v~~~~~ 355 (475)
+| .++|+|+. ..+++++.| ..|.+||+| ...+++.+++|...|.++.|
T Consensus 209 ~S---------------------------~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 209 CS---------------------------VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ee---------------------------eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence 11 88999955 455666543 578999998 45678889999999999999
Q ss_pred ec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECCCCe
Q 011924 356 HP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 356 sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~~~~ 423 (475)
.+ |.++|++++.|+.|.+|+..+ ++.+..+......+..+.|+|... .+++++.+|.|.||.+.++.
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99 559999999999999999976 888999988888999999999665 88999999999999987654
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.8e-17 Score=145.09 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=180.7
Q ss_pred eeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcE
Q 011924 128 ILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKL 201 (475)
Q Consensus 128 ~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~ 201 (475)
..|..|.+.+ |-..+.++.+ +++.++.+|+....... +..+.+ --.+.+.|..+.| -|+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~--W~~Ts~------------Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT--WSCTSS------------WRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc--eEEeee------------EEecCCcEEEEEecCccccce
Confidence 3466666655 5555666655 57899999996433321 221110 0113346778888 7899
Q ss_pred EEEEecCceEEEEeCC-----CCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC------ee
Q 011924 202 LVAGGFQGELICKHLD-----RPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY------QL 269 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~-----~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~------~~ 269 (475)
++++++|+++.||.=. ..+ .-....++....+.|..|.|....-|- .+++++.||.||||+...- ++
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchh
Confidence 9999999999999742 111 111234556677889999994333454 4889999999999987442 22
Q ss_pred eeeee--------ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCC-----CcEEEEE
Q 011924 270 SKHFR--------FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDN-----PDGLLVD 333 (475)
Q Consensus 270 ~~~~~--------~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~d-----g~i~iwd 333 (475)
...+. +..+.. |+.|+| ...+||+|+.+ +.++||.
T Consensus 155 q~Ei~~~~~pp~~~~~~~~-----------------------------CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCF-----------------------------CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred hhhhhhccCCcccccCcce-----------------------------EEeeccccccCceEEEEcccCCccccceEEEE
Confidence 22222 111222 899997 35678887765 4788887
Q ss_pred CCCC----ceEEEeecCCCCeEEEEEecC----CCEEEEEeCCCeEEEEECCCCC-------------------ceEEEE
Q 011924 334 SMTG----KTIASLCGHLDFSFASAWHPN----GVTFATGNQDKTCRIWDLRNLS-------------------ESVAVL 386 (475)
Q Consensus 334 ~~~~----~~~~~l~~h~~~v~~~~~sp~----g~~l~t~s~dg~v~iwd~~~~~-------------------~~~~~~ 386 (475)
...+ ..+.+|.+|.++|++++|.|+ -.+||+++.|| |+||.++... +.+..+
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 6533 245677899999999999994 35899999999 9999986311 234556
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC--CCeeEEEEeccCCCeEEEEEcC
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK--SGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~fsp 442 (475)
..|.+.|..++|.-.|..|++.+.||.|++|-.. +...........+.+....|++
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 7899999999999999999999999999999642 2222222233345555555554
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=2.4e-17 Score=160.49 Aligned_cols=314 Identities=17% Similarity=0.176 Sum_probs=195.6
Q ss_pred eeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCce--EEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE
Q 011924 128 ILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL 201 (475)
Q Consensus 128 ~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~ 201 (475)
+.|-...+-+ |.+..-.|+. +.|.++++|.+...... ..+.+.+ + .+.. ......-| +++.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-~-----------gg~a-~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-V-----------GGSA-GGFWGGLWSPNSNV 330 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec-c-----------cccc-cceeeEEEcCCCCE
Confidence 3566655444 7777745555 56799999998765442 2222221 0 0111 12333334 7788
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeee----cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR----FP 276 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----~~ 276 (475)
+++-|..|..++|.......-.......+|.+.|..|+| +|.|.+ +++.|.|.+-|+|---..+ .-..+. |.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W--~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDW--DPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeee--cCCCCE-EEEeccccceeeecccccccceeeeccccccc
Confidence 999999999999993333322234567899999999999 999997 8888899999998654211 111111 33
Q ss_pred ccEE---ecc-CCceE-----EEEEEeecccceE-----E--EE---------eeeeeeEEECCCCcEEEEEeCCCcE-E
Q 011924 277 WPVN---VSS-SYCII-----LLCRLLNFMTEKV-----I--IC---------LLCLQHSSQSPDGKLLIIVGDNPDG-L 330 (475)
Q Consensus 277 ~~v~---~s~-~~~~l-----~~~~v~d~~~~~~-----~--~~---------~~~i~~~~~sp~g~~l~~~~~dg~i-~ 330 (475)
..++ |-+ +-+.+ -.+|++.....-. + .+ .-+|..+-.|...-..- -...|.. .
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~~~G~~~~ 486 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ETNTGGEAA 486 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-ccccccccc
Confidence 3333 111 11111 1344444322100 0 00 00122222221111100 0000100 0
Q ss_pred EE-ECC------------CC---------ceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCceE
Q 011924 331 LV-DSM------------TG---------KTIASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESV 383 (475)
Q Consensus 331 iw-d~~------------~~---------~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~~ 383 (475)
.| ... +. -.++.+.||...|++++.+|+++++|+++... .|++|+..+ ...+
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~ 565 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQV 565 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhh
Confidence 00 000 00 01245668999999999999999999998643 599999977 6677
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee----EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
..+.+|.-.|+.++|||||++|++++.|.++.+|....... ......|..-|.++.|+|++.++++++-|.++..+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 78999999999999999999999999999999999754321 22355688889999999999999999999887533
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=148.76 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=151.2
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
..++.| ++.|.. |++|..+|.|-|||+.+...-+.+. |..||. +++|
T Consensus 26 a~~~~F--s~~G~~-lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~-----------------------------sl~W 73 (405)
T KOG1273|consen 26 AECCQF--SRWGDY-LAVGCANGRVVIYDFDTFRIARMLSAHVRPIT-----------------------------SLCW 73 (405)
T ss_pred cceEEe--ccCcce-eeeeccCCcEEEEEccccchhhhhhcccccee-----------------------------EEEe
Confidence 577777 999986 9999999999999999998888777 899999 9999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE-ecC--
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL-KGN-- 389 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~-- 389 (475)
|++|+.|++++.|..|.+||+..|.+++.+. ...+|+.+.|+| +.+.+++.-.+..-.+-++.. +.+.+ ...
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCc
Confidence 9999999999999999999999999999888 678999999999 334444443344445555533 22222 111
Q ss_pred ---CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC-CCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 390 ---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 390 ---~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.....+..|.+.|+++++|...|.+.|+|..+.+++..+.... ..|..+.|+..|++|+..+.|+.++
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence 1122334689999999999999999999999988887776544 6899999999999999999998775
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-17 Score=156.75 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=154.6
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+++.+ ...+|++++..|.|.+..+.+.... ..+..+....|..+.+ +|..+.+|.+++.+|.|.+||+...
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~~~sgqsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFTIDSGQSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccc--cceecCCCCeEEEeec--ccccceeeEeeccCCeEEEEeccCC
Confidence 67999988 7889999999999999998765544 2333344556678888 9999999999999999999999888
Q ss_pred eeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
..+.++. |..|.. .++|+| +..+|++.+.|..|.+||++..+....+.
T Consensus 198 sp~~~~~~~HsAP~~-----------------------------gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCR-----------------------------GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred CcccchhhhccCCcC-----------------------------cceecCCccceEEEecccceEEEeecccccccceee
Confidence 7777665 778888 999999 66778889999999999999887777776
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
...+..+++|+|+|.+|+.|+..|.|..||+|....++.++..|...|++++|-|.-
T Consensus 249 -y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 -YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 566889999999999999999999999999999889999999999999999998764
No 159
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=3.7e-16 Score=142.18 Aligned_cols=225 Identities=17% Similarity=0.134 Sum_probs=170.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~ 266 (475)
.+..+.| +...|..|+.+| .++++....+. ........+.-+...|+.+ +++..+.+ +.+++.+++.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-----hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence 3555556 556777787777 66777664433 2222334455666655654 35444444 3599999999
Q ss_pred CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-
Q 011924 267 YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG- 345 (475)
Q Consensus 267 ~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~- 345 (475)
+..+..+.++.+|- ++.++. ++|+++-.. .|+|||+++.++++++..
T Consensus 78 ~~~ICe~~fpt~IL-----------------------------~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 78 KTTICEIFFPTSIL-----------------------------AVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred CceEEEEecCCceE-----------------------------EEEEcc--ceEEEEEcc-cEEEEecccceeehhhhcc
Confidence 98888888999998 888765 456665444 499999999999988864
Q ss_pred --CCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe-EEEEECC
Q 011924 346 --HLDFSFASAWHPNGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVK 420 (475)
Q Consensus 346 --h~~~v~~~~~sp~g~~l~t~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-i~iwd~~ 420 (475)
+...+.++++++.+.++|.-+ ..|.|.|||+.+ -+++..+..|.+++.+++|+|+|.+||+|+..|+ ||||.+.
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 334455555666667888643 368899999987 7889999999999999999999999999999985 8999999
Q ss_pred CCeeEEEEecc--CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 421 SGYEKEQEIDF--FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 421 ~~~~~~~~~~~--~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|..+.++..- ...|.+++|+|++.+|++.+.-+++.
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 99998887743 34688999999999999998887774
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=7.5e-17 Score=156.24 Aligned_cols=265 Identities=13% Similarity=0.182 Sum_probs=206.6
Q ss_pred ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 132 QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
-+.++.+.+++..+..+.+..++++++..+.....+ .| +...|.|+++ +|+.+++|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtL--Kg----------------HKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPL--KG----------------HKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccccc--cc----------------ccceEEEEEEccCCceeccCCCce
Confidence 456788999999999999999999998776543322 11 2236999999 999999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEE
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL 289 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~ 289 (475)
.|.+|+-...+ .+...|+..|.|+.| +|-... +++++-. ..-+|....... ...+....+.
T Consensus 76 ~VI~W~~klEG-----~LkYSH~D~IQCMsF--NP~~h~-LasCsLs-dFglWS~~qK~V-~K~kss~R~~--------- 136 (1081)
T KOG1538|consen 76 SVIIWTSKLEG-----ILKYSHNDAIQCMSF--NPITHQ-LASCSLS-DFGLWSPEQKSV-SKHKSSSRII--------- 136 (1081)
T ss_pred eEEEecccccc-----eeeeccCCeeeEeec--CchHHH-hhhcchh-hccccChhhhhH-HhhhhheeEE---------
Confidence 99999865443 445689999999999 998875 8877543 345676654332 2333344556
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee---cCCCCeEEEEEecCC-----CE
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNG-----VT 361 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~---~h~~~v~~~~~sp~g-----~~ 361 (475)
+.+|..||.+++.|-.+|+|.|-+ .+|.+...+. |...+|++++|+|.. ..
T Consensus 137 --------------------~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 137 --------------------CCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred --------------------EeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 889999999999999999999986 3555544444 477899999999943 47
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+++..+..|+.++.+. ++.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++......|+.+...
T Consensus 196 ~aV~DW~qTLSFy~Ls--G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLS--GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEEeccceeEEEEec--ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 8888888888888884 454443333333456899999999999999999999998 6788888877778899999999
Q ss_pred CCCCeEEEEEecCCcc
Q 011924 442 PDTESLFIGVWDRTYG 457 (475)
Q Consensus 442 pdg~~l~~~~~D~~~~ 457 (475)
|+++++++|+.||++.
T Consensus 273 PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIA 288 (1081)
T ss_pred cCCceEEEEEccCeee
Confidence 9999999999999985
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1e-17 Score=145.64 Aligned_cols=263 Identities=12% Similarity=0.060 Sum_probs=179.1
Q ss_pred cceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.+.|+++.| ...+|.+|...|.|++|.+.+.... ..+. .+...|+.+.. -|++. +.+-+.|+.+.+|++.
T Consensus 13 ~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~---~~~r~~g~~~it~lq~--~p~d~--l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 13 HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDL---PLIRLFGRLFITNLQS--IPNDS--LDTQGRDPLLILWTIA 85 (323)
T ss_pred ccchheehhhccchhhhcccccceEEEEEeecCccc---hhhhhhccceeeceee--cCCcc--hhhcCCCceEEEEEcc
Confidence 4457888888 5667999999999999999876655 2222 45566777766 66653 7888899999999997
Q ss_pred CCeeeeeee-ccccEE---e--ccCCceE----E-------EEEEeecccceEE--------EEeeeeeeEEECC-CCc-
Q 011924 266 KYQLSKHFR-FPWPVN---V--SSSYCII----L-------LCRLLNFMTEKVI--------ICLLCLQHSSQSP-DGK- 318 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~---~--s~~~~~l----~-------~~~v~d~~~~~~~--------~~~~~i~~~~~sp-~g~- 318 (475)
.+..+..-. ....+. | ++..... . .+++-|......+ .....+.|..+.. +++
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 644332211 111111 1 1111111 0 0111111111100 0011222333322 232
Q ss_pred -EEEEEeCCCcEEEEECCCCce----------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-Cc--eEE
Q 011924 319 -LLIIVGDNPDGLLVDSMTGKT----------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SE--SVA 384 (475)
Q Consensus 319 -~l~~~~~dg~i~iwd~~~~~~----------~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~--~~~ 384 (475)
++++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++|+.+..+..|.+... +. ...
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 456778999999999998833 3334468999999999986666678888888999998642 11 111
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+.-..-.|..++..||++.+|+|+.|++|+||+.++..++..+.-|.+.|.+++|+|+.+.||+++.|.++.
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 2222334688999999999999999999999999999999999999999999999999999999999998874
No 162
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.5e-15 Score=147.34 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred EEEEcCcEEEEEe-cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ce---
Q 011924 194 TLAVKDKLLVAGG-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ--- 268 (475)
Q Consensus 194 ~l~~~~~~lvsg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~--- 268 (475)
+++.++++|++++ .++.|.+|+++..+........ ...+....+.+ +|+|+.++++...++.|.+|++.+ +.
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 4444788887664 5789999999743322111111 12234567777 999998666666689999999964 22
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEE------
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA------ 341 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~------ 341 (475)
.+..+....... +++++|+|+++++++ .++.|.+||+.+...+.
T Consensus 118 ~~~~~~~~~~~~-----------------------------~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 118 PIQIIEGLEGCH-----------------------------SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred ceeeccCCCccc-----------------------------EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 222222222233 778999999886655 56899999997633221
Q ss_pred -EeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-C--ceEEEEecC------CCceEEEEEccCCCEEEEEcC
Q 011924 342 -SLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-S--ESVAVLKGN------LGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 342 -~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~--~~~~~~~~~------~~~v~~l~~spdg~~la~~~~ 410 (475)
... .......++|+|+|+++++++. +++|.+|++... + +.+..+... ......+.|+|+|++|+++..
T Consensus 169 ~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 169 VTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred eecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 111 1234678999999999988877 899999999631 2 223333221 112336889999999998854
Q ss_pred -CCeEEEEECCCCeeEEEEecc---CCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 411 -ADFVHVYDVKSGYEKEQEIDF---FGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 411 -dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
++.|.+|++.+......+..+ ......+.|+|+|++|+++.. ++++
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence 689999998543221122222 235678999999999999876 4433
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.9e-16 Score=144.93 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=177.0
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCce----EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
+..+|+.++| +.+.|++|+.|.+|.||.+...+.. .....+.+|...|..++| +|....+|++++.|.+|.
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w--HPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW--HPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEee--cccchhhHhhccCCceEE
Confidence 4458899999 8899999999999999999765532 124567889999999999 888877899999999999
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+|++.++..+.++.|+..|. +++|+.+|.+|++++.|..|+|||.++++.+
T Consensus 158 iWnv~tgeali~l~hpd~i~-----------------------------S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 158 IWNVGTGEALITLDHPDMVY-----------------------------SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred EEeccCCceeeecCCCCeEE-----------------------------EEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 99999999988888999999 9999999999999999999999999999999
Q ss_pred EEeecCCC-CeEEEEEecCCCEEEEEe---CCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEE-EcCCCeE
Q 011924 341 ASLCGHLD-FSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMAT-AEPADFV 414 (475)
Q Consensus 341 ~~l~~h~~-~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~-~~~dg~i 414 (475)
..-.+|.+ ....+.|--+|..+-||. .+.++-+||..+...++....- ....|.-.-|.||..+++. |-.|+.|
T Consensus 209 ~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 98888875 344566778888666663 3778999999887766433322 2345666778998887754 5568999
Q ss_pred EEEECCCCeeEEEEecc---CCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDF---FGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~---~~~i~~l~fspd 443 (475)
+-|.+....+...+..- ..+-.++.|-|.
T Consensus 289 RYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 289 RYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEEEecCCCceeEEecccccCCcccccccccc
Confidence 99999876543333321 234456666663
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=1.6e-16 Score=148.02 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=180.5
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
++|.+|+..+.... .++..+-+.+..+|++|.| +...+++.+.||+|++-|++....... ..
T Consensus 210 G~VG~Wn~~~~~~d--------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v-~s 274 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKD--------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV-LS 274 (498)
T ss_pred CcEEEEecCCCCCc--------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH-hh
Confidence 78899987532221 1122233445568999999 677899999999999999986543311 11
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-eeeee-ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
..........+.+ +.+... ++.+.+=|...+||+++... ...+. |...|+
T Consensus 275 ~~~d~~~fs~~d~--~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~------------------------- 326 (498)
T KOG4328|consen 275 LDTDNIWFSSLDF--SAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT------------------------- 326 (498)
T ss_pred cCccceeeeeccc--cCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccc-------------------------
Confidence 1124445566666 666665 66666677999999987554 33343 666788
Q ss_pred eeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC--ce--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC---
Q 011924 306 LCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--KT--IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR--- 377 (475)
Q Consensus 306 ~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~--~~--~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~--- 377 (475)
+++++| ...+||+++.|++.+|||++.- +. +.....|...|.+..|||.+-.|+|.++|..|+|||..
T Consensus 327 ----sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 327 ----SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ----eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 999999 5667899999999999999843 22 23334599999999999977779999999999999984
Q ss_pred CCCceEEEEecCC-----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC-CeE-EEEEcCCCCeEEEE
Q 011924 378 NLSESVAVLKGNL-----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EIS-GISFSPDTESLFIG 450 (475)
Q Consensus 378 ~~~~~~~~~~~~~-----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~-~l~fspdg~~l~~~ 450 (475)
..-.+..++.... -.....+|.|+..++++|..-..|-|||-..++.+.++.+... .|. -..|+|-+..+++|
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 2234444444321 1334678999999999999988999999887776666554332 343 45799998878877
Q ss_pred Ee
Q 011924 451 VW 452 (475)
Q Consensus 451 ~~ 452 (475)
+.
T Consensus 483 ~~ 484 (498)
T KOG4328|consen 483 GN 484 (498)
T ss_pred CC
Confidence 64
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=157.44 Aligned_cols=264 Identities=13% Similarity=0.101 Sum_probs=176.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|..+.| ....||+++.|.++++||+...+..- .....+|.+.|.+++| .|.+..+|++|+.||.|.|||++-.
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-~~~~~GH~~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-GRLNLGHTGSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeec-ceeecccccccchhhh--ccCCCcceeeccCCCcEEEEEEecc
Confidence 46888888 56688999999999999998766442 2367899999999999 9998889999999999999999653
Q ss_pred eeeee--e------eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCc
Q 011924 268 QLSKH--F------RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGK 338 (475)
Q Consensus 268 ~~~~~--~------~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~ 338 (475)
..... + .+...- .|....---++-|-.+.+.... .| .+.+..|...||+++. |+.|++||++...
T Consensus 178 ~~d~~e~~~~~~~~~~n~~p--tpskp~~kr~~k~kA~s~ti~s---sv-Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAP--TPSKPLKKRIRKWKAASNTIFS---SV-TVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred chhhHHHHhhhhhccccCCC--CCCchhhccccccccccCceee---ee-EEEEEeccceeeeccCCCcceEEEeecccc
Confidence 31110 0 011100 0000000011111111111110 12 1456678888998887 9999999999654
Q ss_pred eEEE--------eecC---CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCc--eEEEEEccCCCE
Q 011924 339 TIAS--------LCGH---LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGA--IRSIRYTSDGRY 404 (475)
Q Consensus 339 ~~~~--------l~~h---~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~--v~~l~~spdg~~ 404 (475)
.... +..| .-.+.++.....|.+|.+.+.|++|..|+++..+ .++..+.++... -..-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 3222 1223 2346677777788999988899999999998643 355555554321 112346899999
Q ss_pred EEEEcCCCeEEEEECCCCee-EEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcceEEEEE
Q 011924 405 MATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~~ll~~~ 463 (475)
|++|+.|...++|.+.+.+. +..+.+|.-+|++++|.|.. .-+++++.|.++ .++...
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~ 391 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRV-KIWRLS 391 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcce-EEEecc
Confidence 99999999999999988654 44566899999999998843 345555666655 344443
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.2e-16 Score=134.89 Aligned_cols=226 Identities=14% Similarity=0.205 Sum_probs=158.6
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCC-------CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRP-------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
+++..+++|++|...|+|.+..+... ...........|.+++..++| . .. +|++| .||.|+-|..+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~--d~-~Lls~-gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--H--DD-FLLSG-GDGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--e--hh-heeec-cCceEEEeeehh
Confidence 34447789999999999999988531 112223445789999999999 3 22 47776 569999998754
Q ss_pred Ceeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
.......+ ...|... + ......|.++.+.|..+-++.++.|+.++.||+++|+..++
T Consensus 91 ~~es~~~K~lwe~~~P~~~-----------------~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQV-----------------D--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hhhhccchhhhhhcCcccc-----------------C--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 32211111 0001110 0 00011233888999877788888999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC----------CceEEEEEccCCCEEEEEcCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL----------GAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~----------~~v~~l~~spdg~~la~~~~dg 412 (475)
++||++++.++.--.....+++|+.||++||||.++ .+.+..+.... ..|-+++- +..+|++|+.-
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp- 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP- 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-
Confidence 999999999998855556799999999999999987 77777665422 23444544 45588888754
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.+.+|.+++.++...+ ...+++..+.|..| .+++++
T Consensus 228 ~lslwhLrsse~t~vf-pipa~v~~v~F~~d--~vl~~G 263 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVF-PIPARVHLVDFVDD--CVLIGG 263 (325)
T ss_pred ceeEEeccCCCceEEE-ecccceeEeeeecc--eEEEec
Confidence 5999999988766544 46788888888765 444444
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-16 Score=160.91 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=188.1
Q ss_pred cceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEec
Q 011924 133 LRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~ 207 (475)
.+.+.+.+=...++.+. ...|.+|+...++.-.-++.. .+....|+.|.+ +..+|++|+.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~---------------~~~~t~Vs~l~liNe~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG---------------AFPDTRVSDLELINEQDDALLLTASS 1131 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCC---------------CCCCCccceeeeecccchhheeeecc
Confidence 34444555555566665 467889997665542222111 123357899998 6679999999
Q ss_pred CceEEEEeCCCCC---ceEEEee--ecCC---CCce-eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec--c
Q 011924 208 QGELICKHLDRPG---VSFCSRT--TYDD---NAIT-NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--P 276 (475)
Q Consensus 208 dg~i~vw~~~~~~---~~~~~~~--~~~~---~~~v-~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~ 276 (475)
||.|+||+-.... ....... +.++ .... .-++| ...... |++++.-..|||||..+.+++..+.. .
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccCccCCCCCeeeeh--hhhCCe-EEecCCeeEEEEEecccceeEeecccCCC
Confidence 9999999864432 1111110 1111 1111 23345 555444 55555688999999998888877763 3
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC-CCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCC--e
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDF--S 350 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~--v 350 (475)
..++ +++-+ +.|+.+++|..||.|++||.+.. ..+...+.|++. |
T Consensus 1209 t~vT-----------------------------aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1209 TLVT-----------------------------ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI 1259 (1387)
T ss_pred ccce-----------------------------eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccc
Confidence 3344 33332 25899999999999999998854 356777889887 9
Q ss_pred EEEEEecCCC-EEEEEeCCCeEEEEECCCC-CceEEEEecCC--C-ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 351 FASAWHPNGV-TFATGNQDKTCRIWDLRNL-SESVAVLKGNL--G-AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 351 ~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~--~-~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
..+.+.+.|- .|++|+++|.|++||+|.. ......+..|. + .++++..+++...+|+|+. +.|.||++. |..+
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l 1337 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQL 1337 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhh
Confidence 9999998664 4999999999999999973 22222333332 3 5899999999999999998 899999975 4444
Q ss_pred EEEecc-------CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 426 EQEIDF-------FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~~~-------~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+..+ .+.+.+++|+|.--.||+|..|.++
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 444432 2578999999998889999877665
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7.2e-16 Score=154.10 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=176.5
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc--e-EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV--S-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
+++|.|+.+ +.++|+.|..+|+|.+||+..... . ........|..++..+.|..++.+.. |+++|.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~-f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE-FFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc-eEEEecCCcEeee
Confidence 346777777 889999999999999999987664 2 22344567889999999988777754 8888899999999
Q ss_pred ECCCCee-eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC---
Q 011924 263 DMGKYQL-SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--- 337 (475)
Q Consensus 263 d~~~~~~-~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~--- 337 (475)
+++.-.. ........... .+........+++++|.| +-..+++|+..|.|+--+....
T Consensus 321 ~~~~l~~P~e~~~~~~~~~-----------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKH-----------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred eccccccchhhcccccccc-----------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 8765322 11100000000 000000111233889988 6778999999998887443311
Q ss_pred -----ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCC
Q 011924 338 -----KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPA 411 (475)
Q Consensus 338 -----~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~d 411 (475)
+.+..+..|.++|+++.++|=+..+...+.|.+|+||.......++..+..+...|++++|||-. ..+|++..+
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 12334556889999999999554444444499999999873367888888888889999999965 478888889
Q ss_pred CeEEEEECCCCe--eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 412 DFVHVYDVKSGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 412 g~i~iwd~~~~~--~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|.|.|||+.... +.............+.|++.|+.|++|...|++.
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 999999986532 3333333445667888999999999999988763
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=6.1e-16 Score=136.43 Aligned_cols=227 Identities=14% Similarity=0.085 Sum_probs=169.9
Q ss_pred eEEEEEE--c-----CcEEEEEecCceEEEEeCCCCCceEEE------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 191 QVSTLAV--K-----DKLLVAGGFQGELICKHLDRPGVSFCS------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 191 ~v~~l~~--~-----~~~lvsg~~dg~i~vw~~~~~~~~~~~------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
+++.+-| + ..+|++. +-.+++|.+.......+. ....++.+++++..| +.-...++.++|-|-
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDT 173 (364)
T ss_pred CccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccC
Confidence 5666666 1 2456655 357999999753322211 223456678888888 776667799999999
Q ss_pred eEEEEECCCCee----eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEE
Q 011924 258 GVRDFDMGKYQL----SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLV 332 (475)
Q Consensus 258 ~v~iwd~~~~~~----~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iw 332 (475)
+..|||++++.. ...+.|...|. .++|...+ ..||++|.||.++++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~-----------------------------DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVY-----------------------------DIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCccee-----------------------------EEEeccCccceEEEecCCCcEEEE
Confidence 999999998732 22344888888 99999844 578899999999999
Q ss_pred ECCCCceEEEe-ec--CCCCeEEEEEec-CCCEEEEEeCCC-eEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEEE
Q 011924 333 DSMTGKTIASL-CG--HLDFSFASAWHP-NGVTFATGNQDK-TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMA 406 (475)
Q Consensus 333 d~~~~~~~~~l-~~--h~~~v~~~~~sp-~g~~l~t~s~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~la 406 (475)
|++...--..+ +. ...+...++|++ +.+++||-..|. .|.|.|+|.+..++..+.+|.+.|..++|.|. +.+|+
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence 99965433222 22 245778899998 778999876654 69999999999999999999999999999995 46999
Q ss_pred EEcCCCeEEEEECCCCee------EEEEeccCCCeEEEEEcC-CCCeEEEEE
Q 011924 407 TAEPADFVHVYDVKSGYE------KEQEIDFFGEISGISFSP-DTESLFIGV 451 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i~~l~fsp-dg~~l~~~~ 451 (475)
+|+.|..+.|||+.+... +..+ ...++|..+.|+| .+.+|+++.
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe
Confidence 999999999999976432 1111 2468999999996 456777665
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.1e-17 Score=155.28 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=184.5
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc---ccEEeccCCc--eEE------
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNVSSSYC--IIL------ 289 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~s~~~~--~l~------ 289 (475)
...|...+.+|.+.|.+|.. .|.|.+ |++|+.||+||||.+.++.+++++... ..|.|.|... +|+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSv--dp~G~w-lasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISV--DPSGEW-LASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred cceeeeeEeccCCeEEEEEe--cCCcce-eeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc
Confidence 34566788899999999999 999987 999999999999999999999988844 3444665432 221
Q ss_pred --------------------------------EEEEeecccc--------eEEEEeeeeeeEEECCCCcEEEEEeC---C
Q 011924 290 --------------------------------LCRLLNFMTE--------KVIICLLCLQHSSQSPDGKLLIIVGD---N 326 (475)
Q Consensus 290 --------------------------------~~~v~d~~~~--------~~~~~~~~i~~~~~sp~g~~l~~~~~---d 326 (475)
.+-.|..... -.+.+...|..+.|+..|.+|+++.. .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 1224543311 12334447889999999999999854 4
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
..|.|.++...+...-|.-..+.|.++.|||...+|+++++. .|+|||+.. +..++.+......|.+++.+|.|..|+
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 578899987666555565566789999999999999988774 699999976 777777877778899999999999999
Q ss_pred EEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 407 TAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.++.|+.+..||+.-. ++.+.+..|...+++++|++.=..+++|+.|+++-
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 9999999999998754 34556667889999999999999999999998875
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=7.6e-15 Score=145.58 Aligned_cols=232 Identities=25% Similarity=0.390 Sum_probs=183.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMG 265 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~ 265 (475)
..+.++.+ .+..++.++.++.+.+|+....... ...... +...+..+.+. ++++..+++.. ..|+.+.+|+..
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee--EEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEEEEec
Confidence 35777777 7788888889999999999876512 122222 22466777776 77777334544 449999999998
Q ss_pred C-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEE
Q 011924 266 K-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~ 342 (475)
. ......+. +...+. .++|+|++..+++++. ++.+++|++..+..+..
T Consensus 143 ~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 143 TPGKLIRTLEGHSESVT-----------------------------SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred CCCeEEEEEecCcccEE-----------------------------EEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence 7 55555554 777888 9999999998888875 99999999999899999
Q ss_pred eecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCceEE-EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 343 LCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+.+|...+.+++|+|++. .+++++.|++|++||... +..+. .+.+|...+ ...|+|++.++++++.++.+++|++.
T Consensus 194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 999999999999999998 555658999999999874 56666 677777664 34899999999999999999999998
Q ss_pred CCee-EEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 421 SGYE-KEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 421 ~~~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.... ......|...+.++.|+|++..+++++.|+.
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 7654 4444567889999999999999999888854
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.9e-16 Score=139.66 Aligned_cols=238 Identities=14% Similarity=0.209 Sum_probs=172.2
Q ss_pred cccceeEEecCCC----eEEEecCCeEEEEecCCCCceEE--EeccCCCCCCCCCCCCccccccceeEEEEEE---cCcE
Q 011924 131 FQLRNLVWATSKH----DVYLMSHFSVIHWSSLTSSRSQV--LNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKL 201 (475)
Q Consensus 131 ~~lr~l~~~~~~~----~v~~~~~~~v~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~ 201 (475)
+....+.|.++.. ++...++..+++|.......... ..+..+ .......+++++.| +-++
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~-----------kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNN-----------KNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccC-----------cccccCCcccccccccCCcce
Confidence 3456677877763 45556778899998764322111 111110 11123358999999 7899
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee-eec---cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FRF---PW 277 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~---~~ 277 (475)
|.+.+-|-+..||++..+........+-.|...|..|+| ...+..+|++.+.||+||+||++...-... +.. ..
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe--ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 999999999999999986433223455578899999999 777878899999999999999976432222 222 23
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEe-CCCcEEEEECCC-CceEEEeecCCCCeEEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVG-DNPDGLLVDSMT-GKTIASLCGHLDFSFASA 354 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~-~dg~i~iwd~~~-~~~~~~l~~h~~~v~~~~ 354 (475)
++. -++|++ +-+++|+-. +...|.|.|++. ..++.+|++|.+.|..++
T Consensus 244 pLl-----------------------------RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 244 PLL-----------------------------RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred cce-----------------------------eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence 444 778888 667777654 456799999994 568999999999999999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEECCCCCc-----eEEEEecCCCceEEEEEcc-CCCEEEEEcCC
Q 011924 355 WHP-NGVTFATGNQDKTCRIWDLRNLSE-----SVAVLKGNLGAIRSIRYTS-DGRYMATAEPA 411 (475)
Q Consensus 355 ~sp-~g~~l~t~s~dg~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~sp-dg~~la~~~~d 411 (475)
|.| .+..|+|++.|..+.|||+..... ++..+. ..+.|..+.|+| .+.+++++...
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 999 678999999999999999965332 333344 456899999997 55788887654
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.3e-16 Score=141.10 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=166.1
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---c-
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F- 275 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~- 275 (475)
..++++-.+|.|++||..+.+.. ..+..+...++.+.|..+ ++...+.+|+.||+|++||++....+..+. +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---~~fk~~~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---EEFKGPPATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---heecCCCCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 57888999999999999885544 556677788888988632 233358999999999999998866554443 2
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe----CCCcEEEEECCCCce-EEEe-ecCCCC
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----DNPDGLLVDSMTGKT-IASL-CGHLDF 349 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----~dg~i~iwd~~~~~~-~~~l-~~h~~~ 349 (475)
+.+.. |++.+..++.+++|. .+-.+.+||+|..+. +..+ ..|.+.
T Consensus 117 ~~~f~-----------------------------~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD 167 (376)
T KOG1188|consen 117 GTPFI-----------------------------CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD 167 (376)
T ss_pred CCcce-----------------------------EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc
Confidence 24555 888888888888885 466799999997665 5544 469999
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeE
Q 011924 350 SFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 350 v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|++++||| +.++|++||.||.|.|||+..... ++...-.+...|.++.|..++ +.|.+-+......+|+++.+.+.
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 99999999 789999999999999999975322 333334466789999999888 45888888999999999987654
Q ss_pred EEEeccC------------CCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 426 EQEIDFF------------GEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 426 ~~~~~~~------------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
..+.... ..+.......++...++++.|..-+.++.+.
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 3332210 1122222222445566666655555555544
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.7e-17 Score=159.87 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=147.3
Q ss_pred EeCCCeEEEEECCC-Cee----eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCC
Q 011924 253 SNNDCGVRDFDMGK-YQL----SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDN 326 (475)
Q Consensus 253 ~s~dg~v~iwd~~~-~~~----~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d 326 (475)
++..|.|-||+++. |++ +-.+.....|. .++|.| |...||++++|
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vt-----------------------------Dl~WdPFD~~rLAVa~dd 649 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVT-----------------------------DLHWDPFDDERLAVATDD 649 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceee-----------------------------ecccCCCChHHeeecccC
Confidence 35678999999865 322 12222344555 899999 88999999999
Q ss_pred CcEEEEECCCC-------ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 327 PDGLLVDSMTG-------KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 327 g~i~iwd~~~~-------~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
|.|+||.+..+ .+...+++|...|+++.||| -...|++++.|.+|++||+++ ......+.+|.+.|..++|
T Consensus 650 g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 650 GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEE
Confidence 99999998754 35567889999999999999 678999999999999999988 7778889999999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
||+|+.+|+.+.||+|++|+.+++........ ..+.-..|.|.-||++|++.+.|......++.+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 99999999999999999999988765433221 1245567889999999999999987765555443
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.4e-17 Score=150.14 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=147.6
Q ss_pred eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 236 ~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
.++++ +.+|.. +++++.||++|+|++.....+.... +...|. ++.||
T Consensus 148 k~vaf--~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-----------------------------DL~FS 195 (398)
T KOG0771|consen 148 KVVAF--NGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-----------------------------DLDFS 195 (398)
T ss_pred eEEEE--cCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccc-----------------------------cceeC
Confidence 56667 999886 9999999999999987766554444 888999 99999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEecCC---C--EEEEEeCCCeEEEEECCCCCc----eE
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNG---V--TFATGNQDKTCRIWDLRNLSE----SV 383 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g---~--~l~t~s~dg~v~iwd~~~~~~----~~ 383 (475)
|||++|++.+.+ ..+||+.++|..+++... -......|.|+.++ . +++....-+.|+.||+..... ..
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 999999999999 899999999988877763 22345567888776 3 333334456688877754222 22
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
+........|++++.|++|+++|.|+.+|.|.|++..+.+.+.... .|.+-|+++.|+||.+++++.+.|.+...+
T Consensus 275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 2222233479999999999999999999999999998877665544 488899999999999999998887766533
No 176
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=1.7e-16 Score=153.34 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=173.6
Q ss_pred ccceeeeccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---c
Q 011924 124 VKSTILHFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---K 198 (475)
Q Consensus 124 ~~~~~~h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~ 198 (475)
++-.+.|+.. -.+.|+++...|..+ .+..+..|+..+++....--.-| +...|.+++| +
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G----------------H~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG----------------HTGSVKSECFMPTN 156 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc----------------cccccchhhhccCC
Confidence 3444555543 345688877666664 56889999988776544311112 2224566666 8
Q ss_pred CcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCC--------------------Cce-eEEEEEeCCCCCeEEEEE
Q 011924 199 DKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDN--------------------AIT-NAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~--------------------~~v-~~l~~~~s~~g~~~l~s~ 253 (475)
...+++|+.||.|.|||+..... .+|......|+ ..| ..|...+..|... |+++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSa 235 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASA 235 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeec
Confidence 88999999999999999875441 11111111111 112 2222223466665 7777
Q ss_pred eC-CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 254 NN-DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 254 s~-dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
+. |+.|+|||+++............-.+.. ..+....+.++.....|.+|.+.+.|+.|+.|
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-----------------~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-----------------HSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccC-----------------cccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 66 9999999998754332211100000000 00011123377888888988888889999999
Q ss_pred ECCCC--ceEEEeecCCCCeE--EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEE
Q 011924 333 DSMTG--KTIASLCGHLDFSF--ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMAT 407 (475)
Q Consensus 333 d~~~~--~~~~~l~~h~~~v~--~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~ 407 (475)
++.+- .++..+.++...-+ .-..+|++.++++|+.|....+|.+.+...+...+.+|.-.|++++|.|.. .-+++
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 99843 35566666543322 235689999999999999999999998888899999999999999998833 34556
Q ss_pred EcCCCeEEEEECCCC
Q 011924 408 AEPADFVHVYDVKSG 422 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~ 422 (475)
++.|..++||++..+
T Consensus 379 cSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCcceEEEeccCc
Confidence 699999999998654
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1e-15 Score=153.41 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=146.2
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC---CeEEEEECCCCeeeeeeeccccEEeccC
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
+.+|.+||.+.... .....+...+..+.| ||+|+. ++.++.+ ..|++||+.+++............
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~w--SPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---- 251 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAW--SPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---- 251 (429)
T ss_pred eEEEEEECCCCCCc----eEeccCCCccccceE--cCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCccC----
Confidence 47899999875442 233456667888999 999998 4444332 479999998876433322333344
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEE--EEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~--iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
.++|+|+|+.|++++ .+|.+. +||+.++. +..+..+...+.+.+|+|+|+.
T Consensus 252 -------------------------~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~ 305 (429)
T PRK01742 252 -------------------------APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQS 305 (429)
T ss_pred -------------------------ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCE
Confidence 678999999888765 577654 55666555 4566767777889999999998
Q ss_pred EEEEe-CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 362 FATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 362 l~t~s-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
|+.++ .++...||++...+.....+ .+.+ ..+.|+|+|++|++++.++ +.+||+.++........ .....+.|
T Consensus 306 i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~ 379 (429)
T PRK01742 306 ILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSI 379 (429)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceE
Confidence 77655 57888999875433333333 3333 4678999999999888765 66699988865432222 23456889
Q ss_pred cCCCCeEEEEEecCCcceE
Q 011924 441 SPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~l 459 (475)
+|||++|+.++.++....+
T Consensus 380 sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 380 SPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCCCEEEEEEcCCCceEE
Confidence 9999999999988877543
No 178
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=6.7e-16 Score=137.99 Aligned_cols=231 Identities=13% Similarity=0.113 Sum_probs=176.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~ 266 (475)
.+|+|.+| +...++.+..+.+|.|+.......-....++..|...|+.|+| +|..+. |++|+.|..-++|.. ..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW--ap~snr-Ivtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW--APKSNR-IVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee--cCCCCc-eeEccCCCCccccccCCC
Confidence 47999999 7888999999999999998877744446788899999999999 999887 999999999999998 44
Q ss_pred Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE--
Q 011924 267 YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-- 341 (475)
Q Consensus 267 ~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-- 341 (475)
++-. ..+++.+..+ ++.|+|.++.||+|+.-..|.||-.+...-..
T Consensus 88 ~~WkptlvLlRiNrAAt-----------------------------~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAAT-----------------------------CVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred CeeccceeEEEecccee-----------------------------eEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 4433 2344777888 99999999999999999999998876543321
Q ss_pred --EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----------------CCceEEEEecCCCceEEEEEccCC
Q 011924 342 --SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN-----------------LSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 342 --~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~-----------------~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
.-+.+...|.+++|||++-+|++|+.|+.+||+..-- .++.+..+....+.|..+.|+|+|
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 2234677899999999999999999999999996421 012334444456789999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCee-EEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 403 RYMATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
..|+-.+.|..|.+-|.....+ +.......-+..++.|-.+. .++.++.|
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 9999999999999999766542 22222223456666665443 33344444
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=6.2e-14 Score=138.98 Aligned_cols=265 Identities=26% Similarity=0.388 Sum_probs=194.7
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCccccccceeEEEE---EEcCc-EEEEE-ecCce
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL---AVKDK-LLVAG-GFQGE 210 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l---~~~~~-~lvsg-~~dg~ 210 (475)
+......+... .+..+.+|+..... ....+... +. ..+..+ ..++. +++.. ..++.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-HD----------------SSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-CC----------------CceeeEEEECCCcceEEeccCCCCcc
Confidence 44444545544 47889999977665 22222110 00 122222 22444 44543 44999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
+.+|++...... ......|...|..+.+ +|++.. +++++. ++.+++|++..+..+..+. +...+.
T Consensus 136 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------- 202 (466)
T COG2319 136 VKLWDLSTPGKL--IRTLEGHSESVTSLAF--SPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS-------- 202 (466)
T ss_pred EEEEEecCCCeE--EEEEecCcccEEEEEE--CCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceE--------
Confidence 999998862222 3556678888999988 999985 666665 9999999998877777666 677888
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecCCCEEEEEe
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
+++|+|++. .+++++.++.+++||...+..+. .+.+|.... -..|+|++.++++++
T Consensus 203 ---------------------~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 203 ---------------------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred ---------------------EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec
Confidence 999999998 55555899999999998888887 688888876 448999999999999
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCCC
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDT 444 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspdg 444 (475)
.|+.+++|+++.....+..+..|...+.++.|+|++..+++++.++.+.+|+..+........ .|...+..+.|++++
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 999999999987444345556778899999999988888888888889999998887666665 677789999994343
Q ss_pred CeEEEE-EecC
Q 011924 445 ESLFIG-VWDR 454 (475)
Q Consensus 445 ~~l~~~-~~D~ 454 (475)
..++.+ ..|+
T Consensus 341 ~~~~~~~~~d~ 351 (466)
T COG2319 341 SLLVSGGSDDG 351 (466)
T ss_pred CEEEEeecCCC
Confidence 566666 4553
No 180
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.72 E-value=3.3e-15 Score=130.45 Aligned_cols=278 Identities=19% Similarity=0.123 Sum_probs=187.5
Q ss_pred ceeeecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeE--EEEEEcCcEE
Q 011924 126 STILHFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV--STLAVKDKLL 202 (475)
Q Consensus 126 ~~~~h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~l 202 (475)
..-.|+|+.+++--......+-. -..++.+|+..+.....+ .+. ++... .++.-+..+|
T Consensus 26 v~snhwqlk~~is~~~~s~~~ni~~t~sv~i~~~y~N~~~iv-~~y-----------------~g~~F~p~s~~~kc~~l 87 (344)
T KOG4532|consen 26 VNSNHWQLKANISLPPPSQPINISKTISVPINSHYSNPKGIV-EFY-----------------TGMTFTPGSFINKCVTL 87 (344)
T ss_pred cchhhhhhhhcccCCCCCccccccceeeeEeccccCCchhhE-Eee-----------------ecccccchHhhccccEE
Confidence 45569999998855554433322 235677787665542111 110 00011 1122267799
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-ccEEe
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-WPVNV 281 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~ 281 (475)
+.||..|++.+|.+.+..... +.-..+...|.-+.= ..+.+.-+..+++|.++++.++..+........+ -.++
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~r--~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n- 162 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHL--YQCDVSNNDVTLVKR--YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN- 162 (344)
T ss_pred EeccccceeeeecccCcccce--eeecccccchhhhhh--hcccccceeeccCCcceeEEEEecCcccceeecccccee-
Confidence 999999999999998665442 222223222221111 1122233777789999999998665433332222 2255
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ce-EE-EeecCCCCeEEEEEecC
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KT-IA-SLCGHLDFSFASAWHPN 358 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~-~~-~l~~h~~~v~~~~~sp~ 358 (475)
++++++++++++++++...|..|.+... .. +. .....++.-++..|+..
T Consensus 163 ----------------------------s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 163 ----------------------------SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred ----------------------------eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 8999999999999999999999988743 32 22 33445677889999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEe----cCCCceEEEEEccCC--CEEEEEcCCCeEEEEECCCCeeEEEEeccC
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLK----GNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
...+|++.+||++.|||+|+...+..... .|.++++.+.|+|-| .+|.....-+.+++.|++++.....+....
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 99999999999999999998776655443 478999999999977 477777888899999999987655544322
Q ss_pred --------CCeEEEEEcCCCCeEEEEEecC
Q 011924 433 --------GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 433 --------~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..|.+-.|+.++..+.+...+.
T Consensus 295 d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 295 DVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cccccccccccccccccCCCcccccccchh
Confidence 2388888999888888877653
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=3.3e-16 Score=151.06 Aligned_cols=237 Identities=19% Similarity=0.231 Sum_probs=163.2
Q ss_pred EEEEEcCcEEEE--EecCceEEEEeCCCCCceEEEeee-cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 193 STLAVKDKLLVA--GGFQGELICKHLDRPGVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 193 ~~l~~~~~~lvs--g~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..++.+..++++ .|..|.|-|++++.++...-...- .-....|..+.| .|-....|++++.||.|++|.+..+..
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~W--dPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHW--DPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeeccc--CCCChHHeeecccCceEEEEEeccCCC
Confidence 345555555553 466799999999887744221111 123456777777 887766799999999999999977544
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
-.....+..+. ..+...|+++.|+| -...|++++.|-+|++||+++++....|.+|++
T Consensus 663 ~e~~~tPe~~l---------------------t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd 721 (1012)
T KOG1445|consen 663 PENEMTPEKIL---------------------TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD 721 (1012)
T ss_pred CcccCCcceee---------------------ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC
Confidence 32222111111 01111233999999 677899999999999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEcCC----CeEEEEECCCCe
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGY 423 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~~d----g~i~iwd~~~~~ 423 (475)
.|+.++|||+|+.+|+.+.||+|+||.-+...+++..-++..+ .-..+.|--+|+++++.+.| ..|.+||.++-.
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 9999999999999999999999999999986667766554332 22357788899999888766 468899876532
Q ss_pred --eEEEE-eccCCCeEEEEEcCCCCeEEEEEe
Q 011924 424 --EKEQE-IDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 424 --~~~~~-~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.+.+. .+..-.+.-..+.+|...|+..+.
T Consensus 802 ~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 802 LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred CCcceeeeecccCccccccccCCCceEEEecC
Confidence 22211 111122223345667666665443
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=5.1e-16 Score=138.80 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=167.7
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
+.-|.+|+..+++.........++ ... ..-.+|+| +|..|++| ....|+++++..++.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~-----------de~--taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQ-----------DEY--TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhH-----------Hhh--hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 467899999998876543322211 011 12346666 88888876 678999999977664432222
Q ss_pred e-----cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceE
Q 011924 228 T-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKV 301 (475)
Q Consensus 228 ~-----~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~ 301 (475)
+ .+..+++.++++ +|-....++.++...++-|+.-..+.++..+. +.+.|+
T Consensus 198 t~~~~k~gq~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT--------------------- 254 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT--------------------- 254 (406)
T ss_pred hhhcccccccceeeeeec--cCCCCcceeeecccceeeeEecCCCCceeeecccCCCee---------------------
Confidence 2 334788999999 99887779999999999999887777776665 888999
Q ss_pred EEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECC-CCceEEEeecCCC-CeEEE--EEecCCCEEEEEeCCCeEEEEEC
Q 011924 302 IICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSM-TGKTIASLCGHLD-FSFAS--AWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 302 ~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~-~~~~~~~l~~h~~-~v~~~--~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
.+.|.++|+.|.+|+. +-.|..||++ .+.++..|..|.+ .-..| ...|+++.|++|+.||.|++||+
T Consensus 255 --------hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 255 --------HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred --------eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 9999999999999974 6789999999 4566777777765 33334 45689999999999999999999
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
...+..+..+..+...+..++++|-=.++|+++..
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCc
Confidence 98788888888899999999999998888887754
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.3e-16 Score=149.57 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=151.1
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-------eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
..+|.|+++ ++..+++||-||+|++|++..+.- ......+.+|...|+.+++ |+.... |++++.||+|
T Consensus 344 ~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~~-Llscs~DgTv 420 (577)
T KOG0642|consen 344 EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKDR-LLSCSSDGTV 420 (577)
T ss_pred cCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee--cccccc-eeeecCCceE
Confidence 347999999 899999999999999997753221 1223456789999999999 777765 9999999999
Q ss_pred EEEECCCCeeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEEC
Q 011924 260 RDFDMGKYQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~ 334 (475)
|+|....... .+|. +..|. ++.+-... ...++....+.--+++.
T Consensus 421 r~w~~~~~~~-~~f~~~~e~g~Pl------------------------------svd~~ss~~a~~~~s~~~~~~~~~~~ 469 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPKEHGYPL------------------------------SVDRTSSRPAHSLASFRFGYTSIDDM 469 (577)
T ss_pred EeeccCCcCc-cccCCccccCCcc------------------------------eEeeccchhHhhhhhcccccccchhh
Confidence 9999866554 3332 22222 22222111 22222223333344555
Q ss_pred CCCceEEEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE
Q 011924 335 MTGKTIASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 335 ~~~~~~~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
..+..+..+.. ....+.-+.++|.+.+.+++..|+.|+++|..+ +.+++....|...++++++.|+|-+|++
T Consensus 470 ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 470 EVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred hhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEe
Confidence 55554444432 123567789999999999999999999999977 8999999999999999999999999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEecc
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
++.|+.|++|.+....++.....|
T Consensus 549 ~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ecCCceeehhhccchheeeccccc
Confidence 999999999998766555544433
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.5e-15 Score=150.60 Aligned_cols=211 Identities=17% Similarity=0.136 Sum_probs=144.4
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE--E
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF--D 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw--d 263 (475)
.+.+.+| +|+.|+.++.+ .+|++|++....... .....+ ....++| +|+|+.++++.+.+|.+.|| |
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g---~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG---HNGAPAF--SPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC---ccCceeE--CCCCCEEEEEEecCCcEEEEEEE
Confidence 4666666 88888887654 479999997654331 122222 2345777 99999856666678876655 6
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-CceEE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIA 341 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~~~~ 341 (475)
+.+++......+...+. +++|+|+|+.|+.++ .++...||++.. +....
T Consensus 279 ~~~~~~~~lt~~~~~~~-----------------------------~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNT-----------------------------EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCCeEeeccCCCCcC-----------------------------CEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 66665443333444455 789999999887665 567778887643 22233
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC--
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-- 419 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-- 419 (475)
.+ ++.. .+++|+|+|++|+.++.++ +.+||+.+ +... .+... .....+.|+|+|++|++++.++.+.+|.+
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS-GSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC-CCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 33 3443 4678999999999888776 55599976 4433 22222 13357889999999999999888887775
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCC
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+|..+..+..|.+.+..++|||-
T Consensus 403 ~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCCCCCCcccCCC
Confidence 457777788788888999999985
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=6.1e-16 Score=134.72 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=159.0
Q ss_pred CeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCC
Q 011924 143 HDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 143 ~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.+++. ...+.|..|...+.+....+... ..-.|+.+.. .+..|.+-+.|+.+.+|++....
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~-----------------g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLF-----------------GRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhh-----------------ccceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence 33444 34588899998877666655432 2235666655 66777888888888888876421
Q ss_pred -----------ceEEEeeec---------------------------------------CCCCceeEEEEEeCCCCCeEE
Q 011924 221 -----------VSFCSRTTY---------------------------------------DDNAITNAVEIYGSPSGAVHF 250 (475)
Q Consensus 221 -----------~~~~~~~~~---------------------------------------~~~~~v~~l~~~~s~~g~~~l 250 (475)
..||...+. ...+.+.+..+-+......++
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 111111000 011223333322122234467
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
++|..+|.|-+||+.++..+..++..+++... . ..+...+.++.+.+.-..=++|+.+-.+.
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~-------------~-----ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESP-------------N-----ASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccc-------------h-----hhccCcceeeeechhhcCCcCCCccccce
Confidence 78889999999999887555444433322200 0 00000111777777555557777778888
Q ss_pred EEECCC--CceE--EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 331 LVDSMT--GKTI--ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 331 iwd~~~--~~~~--~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
.|.+.. |.+. ..++-..-.+..+.+-||++.+||+++|+.||||..++ ..++..++-|.+.|.+++|+|+...+|
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchhh
Confidence 888763 3321 12222234578899999999999999999999999988 789999999999999999999999999
Q ss_pred EEcCCCeEEEEEC
Q 011924 407 TAEPADFVHVYDV 419 (475)
Q Consensus 407 ~~~~dg~i~iwd~ 419 (475)
.|+.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2e-14 Score=131.05 Aligned_cols=192 Identities=16% Similarity=0.273 Sum_probs=146.2
Q ss_pred eeEEEEEEcCcEEEEEecC--ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAVKDKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.-+-|...++|..+.+ ..+++.++.... ..|...+. ..|-+|.+ + .++ |+++ -...|.|||+++.
T Consensus 47 ~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~-~ICe~~fp---t~IL~Vrm--N--r~R-LvV~-Lee~IyIydI~~M 116 (391)
T KOG2110|consen 47 VSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT-TICEIFFP---TSILAVRM--N--RKR-LVVC-LEESIYIYDIKDM 116 (391)
T ss_pred eEEEEeecccceeEEEecCCCceEEEEEcccCc-eEEEEecC---CceEEEEE--c--cce-EEEE-EcccEEEEecccc
Confidence 3566677777777766554 347777776433 33433332 34777777 3 344 5555 3445999999999
Q ss_pred eeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEE
Q 011924 268 QLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 268 ~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~ 341 (475)
+++.++. ++..+. ++++++.+.++|.-+ ..|.|.|||+.+-+++.
T Consensus 117 klLhTI~t~~~n~~gl~-----------------------------AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLC-----------------------------ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred eeehhhhccCCCccceE-----------------------------eeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 9988776 233344 555555667888643 57899999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~-v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.+..|.+.+.+++|+|+|.+|||+|..|| |||+.+.+ ++.+..++-.. ..|.+++|+|++++|++.+..++||||.
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 99999999999999999999999999987 79999977 77777776533 4678999999999999999999999998
Q ss_pred CCC
Q 011924 419 VKS 421 (475)
Q Consensus 419 ~~~ 421 (475)
+.+
T Consensus 247 L~~ 249 (391)
T KOG2110|consen 247 LEK 249 (391)
T ss_pred ecc
Confidence 764
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=6.3e-14 Score=135.97 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=145.4
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CCee--eeeeecccc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQL--SKHFRFPWP 278 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~~~--~~~~~~~~~ 278 (475)
+++...++.|.+|++...+......... ..+....+++ +|+++.+++++..++.|.+|++. +++. .........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4455778999999997544332233333 2345667888 99999866666678899999986 3332 222223333
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-Cc---eEEEeecCCCCeEEE
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GK---TIASLCGHLDFSFAS 353 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~---~~~~l~~h~~~v~~~ 353 (475)
.. .++++|+|++|++++ .++.|.+|++.+ +. .+..+. +.....++
T Consensus 82 p~-----------------------------~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 82 PT-----------------------------HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA 131 (330)
T ss_pred ce-----------------------------EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence 44 889999999988876 478899999863 32 233333 23446778
Q ss_pred EEecCCCEEEEEe-CCCeEEEEECCCCCceE------EEEecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCC--Ce
Q 011924 354 AWHPNGVTFATGN-QDKTCRIWDLRNLSESV------AVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GY 423 (475)
Q Consensus 354 ~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~------~~~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~--~~ 423 (475)
+++|+++++++++ .++.|.+||+...+... ..... ....+.++|+|+|++|+++.. ++.|.+|++.. +.
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 9999999886655 56899999997533221 11111 234678999999999988766 89999999973 32
Q ss_pred --eEEEEecc------CCCeEEEEEcCCCCeEEEEEe
Q 011924 424 --EKEQEIDF------FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 424 --~~~~~~~~------~~~i~~l~fspdg~~l~~~~~ 452 (475)
....+..+ ......+.|+|+|++|+++..
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 22222211 123446899999999999854
No 188
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=8.5e-15 Score=134.30 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=172.8
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEEC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDM 264 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~ 264 (475)
+...+|..++.....|++|-.+|.+.+|....+.......+.......+..+.- ++....++++|+.. ..+.+||+
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~--~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQ--TDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeecc--CCCCCceEecCchhcccceeeeec
Confidence 344577788887778899999999999998744311111111122245566665 77777778889888 88999999
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCC-ceEE
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTG-KTIA 341 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~-~~~~ 341 (475)
+..+.+..-..... ...-.-+.+ .++.+.|-|. ...||+++.-+.+++||++.+ +++.
T Consensus 181 e~~~qiw~aKNvpn------D~L~LrVPv-------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPN------DRLGLRVPV-------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ccceeeeeccCCCC------ccccceeee-------------eeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 88755443331110 000011222 3447778776 789999999999999999965 5788
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+.--..++.++...|.++++++|..-+.+..+|++...-....+.+-.++|+++..+|.+++||+++-|..|+|+|+++
T Consensus 242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 88877889999999999999999999999999999883334444888999999999999999999999999999999998
Q ss_pred CeeEEEEeccCCCeEEEEEcCC
Q 011924 422 GYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspd 443 (475)
...+.... ....+++|.+.++
T Consensus 322 rkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 322 RKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred chhhhhhh-hhccccEEEecCC
Confidence 55443322 3456777777664
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.7e-15 Score=132.26 Aligned_cols=201 Identities=12% Similarity=0.172 Sum_probs=152.2
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE---eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+.|.|+.| ++..|++-. +..|.+|++......... ....++....++-+|..+.+|+. +++. .|++++.||
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VATT-SDSTLQFWD 199 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEEe-CCCcEEEEE
Confidence 358899999 777777765 889999999876542111 11122333455667732336764 5554 799999999
Q ss_pred CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCC-Cce
Q 011924 264 MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMT-GKT 339 (475)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~-~~~ 339 (475)
+++.+....+. |...|. .+.|+|+.. +|+++++||.|+|||.+. ..+
T Consensus 200 ~RT~~~~~sI~dAHgq~vr-----------------------------dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVR-----------------------------DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred ccchhhhcchhhhhcceee-----------------------------eccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 99988777666 667788 999999665 577889999999999984 558
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC----------------------------ceEEEEecCC
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS----------------------------ESVAVLKGNL 390 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~----------------------------~~~~~~~~~~ 390 (475)
+..+.+|.-+|+++.|+| ...++++|+.|..|.+|...... ..+.++..|.
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 999999999999999999 56799999999999999764311 1344666788
Q ss_pred CceEEEEEccCC-CEEEEEcCCCeEEEEECCC
Q 011924 391 GAIRSIRYTSDG-RYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 391 ~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~ 421 (475)
..|.+++||.-. -.+|+-+.||++.|=.+..
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999999998744 4678889999998877653
No 190
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.6e-14 Score=143.07 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=139.3
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... ....+...+...+| +|+|+.++++...+ ..|.+||+.+++.......+....
T Consensus 176 ~~L~~~D~dG~~~~----~l~~~~~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~------ 243 (427)
T PRK02889 176 YQLQISDADGQNAQ----SALSSPEPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS------ 243 (427)
T ss_pred cEEEEECCCCCCce----EeccCCCCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc------
Confidence 35666665432222 22245567788888 99999744444222 459999998887654433444455
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE-EeCCCcEEEE--ECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII-VGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~dg~i~iw--d~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+.+|+|+|+.|+. .+.++...|| |+.++. ...+..+........|+|||+.|+
T Consensus 244 -----------------------~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 244 -----------------------APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred -----------------------ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence 7899999998875 4566665555 554444 556665666667789999999888
Q ss_pred EEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 364 TGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 364 t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
..+. ++...||.+...+.....+..........+|||+|++|+..+..+ .|.+||+.++... .+.. ......+.
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~ 377 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPS 377 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCce
Confidence 6654 466677765422222333332233345688999999998876554 6999999887644 3332 23456789
Q ss_pred EcCCCCeEEEEEecCCcceE
Q 011924 440 FSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 440 fspdg~~l~~~~~D~~~~~l 459 (475)
|+|||+.|+.++.++....+
T Consensus 378 ~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred ECCCCCEEEEEEecCCCEEE
Confidence 99999999998877654333
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=133.13 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=172.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC---c-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG---V-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|.++.| ++++|++||.|-.+++|+++..- . .........|.+.|-+++| ...+. .+.+|.++++|.+.|
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F--~~~N~-~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF--DLENR-FLYSGERWGTVIKHD 133 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--ccCCe-eEecCCCcceeEeee
Confidence 36888888 89999999999999999986321 1 1112333456689999999 65555 499999999999999
Q ss_pred CCCCeeeeeeeccc---cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc-e
Q 011924 264 MGKYQLSKHFRFPW---PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-T 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~~---~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~ 339 (475)
+++.+.+..+.+.. .|. .+..+|..+.|++.+.++.|.+||.+... +
T Consensus 134 iEt~qsi~V~~~~~~~~~VY-----------------------------~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVY-----------------------------HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred cccceeeeeecccCccccee-----------------------------ecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 99999888777544 777 99999999999999999999999998554 2
Q ss_pred --EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE------------------------------
Q 011924 340 --IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL------------------------------ 386 (475)
Q Consensus 340 --~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~------------------------------ 386 (475)
+..+.........+-|+| ...+|++++..+-+.+||.|...+++...
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 222333455677889999 67889999999999999987643221110
Q ss_pred -----------------ec-CC-------CceEEEEEccCCCEEEEEcCCCeEEEEECCCC-------------------
Q 011924 387 -----------------KG-NL-------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------------------- 422 (475)
Q Consensus 387 -----------------~~-~~-------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~------------------- 422 (475)
+. |. ..+.+++|--| +-+++|+.+-.|++|.+...
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 00 00 12334444433 23778888878999987531
Q ss_pred ----eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 423 ----YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 423 ----~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
..+..+.+|..-+..+.|+|....|++.+....++-+
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 1234566788889999999998888887766655433
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-15 Score=140.13 Aligned_cols=196 Identities=18% Similarity=0.173 Sum_probs=143.6
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
.+.+...+|..|++|+.||.+++|++...... .....|.+.|..+.| +|+|+. |++-+.| ..+||+++++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~F--S~dgk~-lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDF--SPDGKF-LASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCcccccee--CCCCcE-EEEecCC-ceEEEEeccCchh
Confidence 34444448899999999999999998765544 445568889999999 999996 8887788 8999999998665
Q ss_pred eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC---c--EEEEEeCCCcEEEEECCCCc------
Q 011924 271 KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG---K--LLIIVGDNPDGLLVDSMTGK------ 338 (475)
Q Consensus 271 ~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g---~--~l~~~~~dg~i~iwd~~~~~------ 338 (475)
.... ...+-.|+ .+.|+.++ . +++.....+.|..|++..-+
T Consensus 221 a~~t~~~k~~~~~---------------------------~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 221 ARKTPFSKDEMFS---------------------------SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred hhcCCcccchhhh---------------------------hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 5444 22222211 55676665 2 23333445567776654211
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.-+.+. -...|.+++.+++|+++|.|+.||.|-|++..........-+.|...|+.+.|+|+.+++++.+.+...+|.-
T Consensus 274 ~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 274 LRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred hhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 111122 2346999999999999999999999999999875444555567999999999999999999999999888887
Q ss_pred CCC
Q 011924 419 VKS 421 (475)
Q Consensus 419 ~~~ 421 (475)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=4.6e-15 Score=136.54 Aligned_cols=188 Identities=20% Similarity=0.301 Sum_probs=148.0
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee---------eeeee-ccccEEeccCCceEEEEEEeecccce
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---------SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEK 300 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~ 300 (475)
...++..+.| .++....+++|+.|..|++|-+..... ...+. |...|+
T Consensus 12 ~~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN-------------------- 69 (434)
T KOG1009|consen 12 DHEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN-------------------- 69 (434)
T ss_pred CCCceEEEEe--ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE--------------------
Confidence 4556788888 666654599999999999998865321 12222 777888
Q ss_pred EEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC--------C--------CceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM--------T--------GKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 301 ~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~--------~--------~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
++.|+|+|.+||+|+++|.+.+|-.. + -.....+.+|...|+.++|+|+++++++
T Consensus 70 ---------~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 70 ---------VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ---------EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 99999999999999999999999765 2 1234567789999999999999999999
Q ss_pred EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe--------c------
Q 011924 365 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--------D------ 430 (475)
Q Consensus 365 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~--------~------ 430 (475)
++.|.++++||+.. +.....+..|..-|..++|.|-++++++-+.|...+++.+.......... .
T Consensus 141 ~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEecc-ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999999987 88999999999999999999999999999998877777765432221111 0
Q ss_pred -----cC----CCeEEEEEcCCCCeEEEE
Q 011924 431 -----FF----GEISGISFSPDTESLFIG 450 (475)
Q Consensus 431 -----~~----~~i~~l~fspdg~~l~~~ 450 (475)
|. .-...++|+|+|..|++.
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 11 123467999999999865
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.6e-15 Score=143.50 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=161.7
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--------Ceeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
+...|...|.++++ .|.... |++++.|+++.+|.++. .+.+.+|. |.+||-
T Consensus 289 tl~s~~d~ir~l~~--~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl----------------- 348 (577)
T KOG0642|consen 289 TLRSHDDCIRALAF--HPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL----------------- 348 (577)
T ss_pred eeecchhhhhhhhc--CCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceE-----------------
Confidence 45567777888888 777665 99999999999999933 23455666 888999
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC----------ceEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG----------KTIASLCGHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~----------~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
|+++++++..+.+|+.||+|+.|++... .....+.||.+.++.+++|+....|++++.
T Consensus 349 ------------~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 349 ------------CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred ------------EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence 9999999999999999999999965411 234567899999999999999889999999
Q ss_pred CCeEEEEECCCCCce-------------------------------------------EEEEec-------CCCceEEEE
Q 011924 368 DKTCRIWDLRNLSES-------------------------------------------VAVLKG-------NLGAIRSIR 397 (475)
Q Consensus 368 dg~v~iwd~~~~~~~-------------------------------------------~~~~~~-------~~~~v~~l~ 397 (475)
||||++|.......+ +..+.. ....+..+.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 999999987431110 000000 012356778
Q ss_pred EccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 398 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 398 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.|.+.+.+++-.|+.|+++|..++..+.....|...++++++.|+|.+|++++.|+.++
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence 889999999999999999999999999999999999999999999999999999999875
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=6.9e-15 Score=139.80 Aligned_cols=200 Identities=19% Similarity=0.226 Sum_probs=146.6
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceE-EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSF-CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 276 (475)
++--|+.|-..|.|++.+........ ......-.+..|+++.| -|.++.+|+++-.+|.+.+||... .
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~~---------~ 252 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKEI---------V 252 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeeccc---------c
Confidence 56667788888999888765422210 00111123467999999 566655688888999999998711 1
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
.... .. +...-+++..+++..... ..+..++..+.--++.|...+|+
T Consensus 253 ~~~t--~p-------------------------~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 253 CGAT--AP-------------------------SYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ccCC--CC-------------------------cccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEc
Confidence 1111 00 222334666666542211 11224555665556689999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|||++||+.++||.+||||..+ .+.+..++..-+...|++|||||+||++|+.|+-|.||.+...+.+..-.+|...|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred CCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 9999999999999999999976 666777777778899999999999999999999999999999999998899999999
Q ss_pred EEEEcC
Q 011924 437 GISFSP 442 (475)
Q Consensus 437 ~l~fsp 442 (475)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999997
No 196
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=138.36 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=143.1
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... .+ ..+...+....| ||+|+.++.+.. .+..|.+|++.+++.......+....
T Consensus 179 ~~l~~~d~dg~~~~---~l-t~~~~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~------ 246 (429)
T PRK03629 179 YELRVSDYDGYNQF---VV-HRSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG------ 246 (429)
T ss_pred eeEEEEcCCCCCCE---Ee-ecCCCceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC------
Confidence 37888887654433 22 234557788888 999998554432 34579999998876544333444445
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
.++|+|+|+.|+.. ..++ .|++||+.+++.. .+..+...+...+|+|+|+.|+
T Consensus 247 -----------------------~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 247 -----------------------APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred -----------------------CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEE
Confidence 77899999988865 3344 5899999887654 4444455678899999999888
Q ss_pred EEeCC-CeEEEE--ECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQD-KTCRIW--DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~d-g~v~iw--d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+.. +...|| |+.. + ....+.........+.|+|||++|+..+.+ ..|.+||+.++... .+.. ......
T Consensus 303 f~s~~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~ 378 (429)
T PRK03629 303 YTSDQAGRPQVYKVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDET 378 (429)
T ss_pred EEeCCCCCceEEEEECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCC
Confidence 77653 444555 5543 3 334444444456678999999999876543 35889999887543 3332 223457
Q ss_pred EEEcCCCCeEEEEEecCCcce
Q 011924 438 ISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~ 458 (475)
..|||||++|+.++.++....
T Consensus 379 p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 379 PSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ceECCCCCEEEEEEcCCCceE
Confidence 889999999999998876443
No 197
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.8e-13 Score=137.67 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=143.1
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... ....+...+....| +|+|+.++.+.. .+..|.+||+.+++.......+..+.
T Consensus 182 ~~l~~~d~dg~~~~----~lt~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~------ 249 (435)
T PRK05137 182 KRLAIMDQDGANVR----YLTDGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF------ 249 (435)
T ss_pred eEEEEECCCCCCcE----EEecCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc------
Confidence 47888887543322 23355667888888 999997444432 34689999998877644333555555
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+.+|+|+|+.|+.. +.++ .|++||+.++.. ..+..+.......+|+|||+.|+
T Consensus 250 -----------------------~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 250 -----------------------APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred -----------------------CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEE
Confidence 78999999987654 4444 488889887764 45666666677899999999988
Q ss_pred EEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+. ++ .|.+||+.. +. ...+..+.+.+..+.|+|+|++|+....+ ..|.+||+.++.. ..+. ....+..
T Consensus 306 f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~ 381 (435)
T PRK05137 306 FESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEG 381 (435)
T ss_pred EEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCC
Confidence 7764 33 688888753 33 44444445556778999999999877543 3688899865543 3332 2335778
Q ss_pred EEEcCCCCeEEEEEecC
Q 011924 438 ISFSPDTESLFIGVWDR 454 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~ 454 (475)
+.|+|||+.|+..+.++
T Consensus 382 p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 382 PTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CeECCCCCEEEEEEccC
Confidence 99999999998776544
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=3.2e-13 Score=121.00 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=157.9
Q ss_pred EEEEEEcCcEEEE-EecC------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 192 VSTLAVKDKLLVA-GGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 192 v~~l~~~~~~lvs-g~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.-|-+..++|+. ||.. ..|.|||=..... .....-.++|.+|.+ .++ . +++. ..+.|.||..
T Consensus 51 ~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~----i~el~f~~~I~~V~l--~r~--r-iVvv-l~~~I~VytF 120 (346)
T KOG2111|consen 51 IVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC----IIELSFNSEIKAVKL--RRD--R-IVVV-LENKIYVYTF 120 (346)
T ss_pred hhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE----EEEEEeccceeeEEE--cCC--e-EEEE-ecCeEEEEEc
Confidence 4444455555553 3333 6899999332222 233345667899988 555 2 5554 6789999998
Q ss_pred C-CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCce
Q 011924 265 G-KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKT 339 (475)
Q Consensus 265 ~-~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~ 339 (475)
. .-+.++.+. .|..+. +++-..+..+||.-| .-|.|.|.|+...+.
T Consensus 121 ~~n~k~l~~~et~~NPkGlC-----------------------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 121 PDNPKLLHVIETRSNPKGLC-----------------------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred CCChhheeeeecccCCCceE-----------------------------eecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 6 344454443 344454 333333444555533 568999999986554
Q ss_pred --EEEeecCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeE
Q 011924 340 --IASLCGHLDFSFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 340 --~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~-v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
...+..|...|.|++.+-+|.++||+|..|| |||||..+ +..+..+.-. ...|.+++|||++.+||++|..|+|
T Consensus 172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 4678899999999999999999999999997 89999988 7777777643 3579999999999999999999999
Q ss_pred EEEECCCCeeEE------------------------EEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 415 HVYDVKSGYEKE------------------------QEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 415 ~iwd~~~~~~~~------------------------~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+||.++...... ++.-..+...-++|-.+.+.+++.+.||++-++.-+
T Consensus 251 HiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 251 HIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999886532111 111123445556777776677777788877655544
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.9e-13 Score=136.76 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=146.1
Q ss_pred eEEEEEE--cCcEEEEEe---cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGG---FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+.+.+| +|+.|+..+ ....|.+|++...... .+ ....+.+..+.| +|+|+.++++.+.++ .|.+||
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l-~~~~~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV-ASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEE
Confidence 4566666 888887654 2457899998764432 11 122233456777 999998666655555 588899
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-C--cEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-P--DGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-g--~i~iwd~~~~~~~ 340 (475)
+.+++..........+. ...|+|+|+.|+.++.+ + .|+++++.++..
T Consensus 274 ~~tg~~~~lt~~~~~~~-----------------------------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 274 LASGQIRQVTDGRSNNT-----------------------------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCCCCEEEccCCCCCcC-----------------------------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 98877655444444455 78999999999887754 3 455667766654
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe---E
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF---V 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~---i 414 (475)
..+..+.......+|+|+|++|+..+.+ ..|.+||+.. +. ...+... .......|+|||++|+.++.++. +
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 4444444556678999999999887653 3588899865 33 3444432 23457889999999999887753 7
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.++++ +|.....+..|.+.+..++|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 77887 45566667778889999999983
No 200
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.63 E-value=1.1e-14 Score=130.58 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=163.3
Q ss_pred eeEEEEEE-------cCcEEEEEecCceEEEEeCCCCCceEEEeee--cCCCCceeEEEEEeCC-CCCeEEEEEeCCCeE
Q 011924 190 TQVSTLAV-------KDKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSP-SGAVHFTASNNDCGV 259 (475)
Q Consensus 190 ~~v~~l~~-------~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v 259 (475)
.+|..++| ..+.+++.| ...+.++...........+.. .++......++|.... +++.++++++.-|.|
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvI 117 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVI 117 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEE
Confidence 45666666 234555555 456778887655532222222 2344455555664333 356678888899999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
+|.|+.++++...+. |.+.|+ .+.+.| ..+++++++.|..|++|++++.
T Consensus 118 rVid~~~~~~~~~~~ghG~sIN-----------------------------eik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSIN-----------------------------EIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEEecchhhhccceeccCccch-----------------------------hhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 999999999988887 899999 999999 4578899999999999999999
Q ss_pred ceEEEee---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC--c---eE----------------E------EEe
Q 011924 338 KTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS--E---SV----------------A------VLK 387 (475)
Q Consensus 338 ~~~~~l~---~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~--~---~~----------------~------~~~ 387 (475)
.++..+- ||.+.|.++.|+++|.+|++++.|.++++|++.... . .. . +-.
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 9998874 699999999999999999999999999999986210 0 00 0 112
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC-Cee-------------EEEEeccCCCeEEE--EEcCCCCeEEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS-GYE-------------KEQEIDFFGEISGI--SFSPDTESLFIGV 451 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~-~~~-------------~~~~~~~~~~i~~l--~fspdg~~l~~~~ 451 (475)
-|...|-|++|- |.++++-+-++.|..|-.-. ++. +..+.-....|+-+ +|.|-++.||.|.
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 245566666665 56888888889999998621 111 11111123455554 4566678888876
Q ss_pred ecCC
Q 011924 452 WDRT 455 (475)
Q Consensus 452 ~D~~ 455 (475)
.-|.
T Consensus 327 q~g~ 330 (385)
T KOG1034|consen 327 QSGK 330 (385)
T ss_pred CCCc
Confidence 5543
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=1e-14 Score=138.67 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=132.9
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..-+.+.+.++...+...+++.... .....|+|+.| +...++++-.+|.+++++......
T Consensus 192 f~tGqvq~idp~~~~~sklfne~r~--------------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~--- 254 (636)
T KOG2394|consen 192 FTTGQVQLIDPINFEVSKLFNEERL--------------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG--- 254 (636)
T ss_pred eccCceEEecchhhHHHHhhhhccc--------------ccccceEEEEEEeCCCceEEEEEecCceEEeecccccc---
Confidence 4456666666666544555544432 23368999999 666777777899999998732111
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.....+...+++.. +... .|-- .+...+.... ...+++
T Consensus 255 ----------~t~p~~~~~k~~~~-f~i~-------t~ksk~~rNPv~~w~~~~g~in---------------------- 294 (636)
T KOG2394|consen 255 ----------ATAPSYQALKDGDQ-FAIL-------TSKSKKTRNPVARWHIGEGSIN---------------------- 294 (636)
T ss_pred ----------CCCCcccccCCCCe-eEEe-------eeeccccCCccceeEecccccc----------------------
Confidence 11111111334433 2222 1110 1112222222 233566
Q ss_pred EEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
..+|+|||++||+++.||.++|+|..+..++..++..-+...|++|||||++|++|+.|-.|.||.+.. .+.
T Consensus 295 -------~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRV 366 (636)
T KOG2394|consen 295 -------EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRV 366 (636)
T ss_pred -------ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceE
Confidence 889999999999999999999999999988888888888999999999999999999999999999976 788
Q ss_pred EEEEecCCCceEEEEEcc
Q 011924 383 VAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp 400 (475)
+..-++|.+.|..++|.|
T Consensus 367 VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccccccceeeEeecc
Confidence 888899999999999983
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=9.4e-16 Score=143.21 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=178.9
Q ss_pred EEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee
Q 011924 194 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 271 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (475)
.+.+ +|..|+.||..|.|..+|+.+....+...+ ...|..+.| -.+.++ ++++ ....+.|||- .|..+.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~--LHneq~-~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTF--LHNEQF-FAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhh--hcchHH-HHhh-hhceEEEecC-CCcEEe
Confidence 4445 899999999999999999987765543332 334677777 455554 6665 6678999996 466667
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF 351 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~ 351 (475)
.+.....|+ .+.|-|-.-+|++++..|.+..-|+.+|+.+..+..-.+.+.
T Consensus 205 Clk~~~~v~-----------------------------rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 205 CLKRHIRVA-----------------------------RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred ehhhcCchh-----------------------------hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 777666777 889999999999999999999999999999999988888899
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.++-+|-...+-+|...|+|.+|.... ..++..+-.|.++|.++++.++|+|+||++.|..++|||++....+.++..
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 999999888999999999999999965 788888889999999999999999999999999999999998887766655
Q ss_pred CCCeEEEEEcCCCCeEEEE
Q 011924 432 FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 432 ~~~i~~l~fspdg~~l~~~ 450 (475)
.-+...++||..| .||++
T Consensus 334 p~~a~~ls~Sqkg-lLA~~ 351 (545)
T KOG1272|consen 334 PHPASNLSLSQKG-LLALS 351 (545)
T ss_pred CCCcccccccccc-ceeee
Confidence 4567788898765 44444
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.5e-13 Score=138.10 Aligned_cols=214 Identities=16% Similarity=0.115 Sum_probs=142.5
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
.+|.+||.+..... ....+...+....| +|+|+.++.+.. ....|.+|++.+++.......+....
T Consensus 184 ~~l~i~D~~g~~~~----~lt~~~~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~------ 251 (433)
T PRK04922 184 YALQVADSDGYNPQ----TILRSAEPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING------ 251 (433)
T ss_pred EEEEEECCCCCCce----EeecCCCccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc------
Confidence 46888887643322 22344566778888 999997444432 23469999998876543333344444
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|+|+.|+.. +.++ .|++||+.+++. ..+..+......++|+|+|+.|+
T Consensus 252 -----------------------~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 252 -----------------------APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred -----------------------CceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence 67899999987654 4444 699999988764 45665655567789999999888
Q ss_pred EEeC-CCe--EEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DKT--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
.++. ++. |.++|+.. ++ ...+.........++|+|+|++|+..+.++ .|.+||+.++... .+. +......
T Consensus 308 f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~ 383 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDES 383 (433)
T ss_pred EEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCC
Confidence 7764 444 66666644 33 333333333455789999999998765433 6999999887654 332 3334567
Q ss_pred EEEcCCCCeEEEEEecCCcceEEEE
Q 011924 438 ISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+.|+|||++|+..+.++....|..+
T Consensus 384 p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 384 PSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred ceECCCCCEEEEEEecCCceEEEEE
Confidence 8999999999888776544444444
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=140.40 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=169.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|..+++ +|..|+.+. +..+.++|.+.++.. +++.+|...|++++| +.+|+. +++|+.|..|.+|.-.- +
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---qtLKgHKDtVycVAy--s~dGkr-FASG~aDK~VI~W~~kl-E 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---QPLKGHKDTVYCVAY--AKDGKR-FASGSADKSVIIWTSKL-E 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc---cccccccceEEEEEE--ccCCce-eccCCCceeEEEecccc-c
Confidence 5777777 777766664 457899999876655 778899999999999 999996 99999999999998643 2
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
-+..+.|...+. |+.|+|-...|++++-+ ..-+|..... .+...+ ...
T Consensus 86 G~LkYSH~D~IQ-----------------------------CMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~k-ss~ 133 (1081)
T KOG1538|consen 86 GILKYSHNDAIQ-----------------------------CMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHK-SSS 133 (1081)
T ss_pred ceeeeccCCeee-----------------------------EeecCchHHHhhhcchh-hccccChhhh-hHHhhh-hhe
Confidence 234556788888 99999999999988653 3567876533 232222 346
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe---cCCCceEEEEEccCC-----CEEEEEcCCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDG-----RYMATAEPADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg-----~~la~~~~dg~i~iwd~~ 420 (475)
.+.+++|..||.+|+.|-.+|||.|-+.. +++...+. +...+|++++|+|.. ..+++.....++.+|.+.
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 78899999999999999999999998653 34333333 366799999999954 377778778888888864
Q ss_pred CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|+.+.......-...++.+-|+|+++++|+.|+.+
T Consensus 212 -G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 212 -GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred -ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 44444333444567899999999999999999754
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=3.3e-13 Score=120.94 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=161.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDF 262 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iw 262 (475)
+...++| +..-+++|...| .++|+++.-+....... +.+.+..+.+.+- .+++.+.|+.. ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~---~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF---IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc---ccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEE
Confidence 3455788 566666665555 89999876433221111 1111333333212 23445555444 479999
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC-CCceEE
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIA 341 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~ 341 (475)
|=...+++.++.+..+|. ++.++++ .++++- .+.|+||... ..+.++
T Consensus 81 DD~k~~~i~el~f~~~I~-----------------------------~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~ 128 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIK-----------------------------AVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH 128 (346)
T ss_pred ecccCcEEEEEEecccee-----------------------------eEEEcCC--eEEEEe-cCeEEEEEcCCChhhee
Confidence 977788889999999999 8888875 455553 4679999987 667777
Q ss_pred EeecCCCCeEEEEEec--CCCEEEE-EeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCCEEEEEcCCCe-EEE
Q 011924 342 SLCGHLDFSFASAWHP--NGVTFAT-GNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHV 416 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp--~g~~l~t-~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-i~i 416 (475)
.+..-..+=--++..| +..+||. |..-|.|+|-|+..... +...+.+|.+.|.+++.+.+|..||+||..|+ |+|
T Consensus 129 ~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 129 VIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred eeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 6664332222334445 4444554 34578999999976333 45788999999999999999999999999996 899
Q ss_pred EECCCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 417 YDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 417 wd~~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
||..+|..+..+.. -...|.+|+|||++.+|++++.-|++..
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 99999998888764 2367999999999999999998887753
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1e-13 Score=122.78 Aligned_cols=111 Identities=21% Similarity=0.391 Sum_probs=88.2
Q ss_pred eEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEE
Q 011924 310 HSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVA 384 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~ 384 (475)
+++|+|+|+.||+.. .+..|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++ .+.+.
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~ 139 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIS 139 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEee
Confidence 999999999987653 46789999996 66676664 567789999999999999874 46799999986 56666
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcC------CCeEEEEECCCCeeEEE
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~------dg~i~iwd~~~~~~~~~ 427 (475)
.... ..++.++|+|+|++|+++.. |+.++||+.. |..+..
T Consensus 140 ~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 140 TFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 5543 34789999999999999874 6779999974 655543
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=6.6e-14 Score=140.13 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=169.7
Q ss_pred ceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEec
Q 011924 134 RNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGF 207 (475)
Q Consensus 134 r~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~ 207 (475)
..+.+++-...+.. +.+++|.+|+...+......-+ ..+.+.+..+|+.+.| .+.-+++++.
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc------------ccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 33445554444444 4568999999776554321100 1123344557888888 3356889999
Q ss_pred CceEEEEeCCCCCceEEE---eee------cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ce-----ee
Q 011924 208 QGELICKHLDRPGVSFCS---RTT------YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQ-----LS 270 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~---~~~------~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~-----~~ 270 (475)
||.|..|+++.-...... ... ......+++++| .+.....|+.|+..|.|.--.-.. .. .+
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F--~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF--EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEee--ccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 999999987643321100 011 122234666777 888878899999999987733322 11 12
Q ss_pred -eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECC-CCceEEEeecCC
Q 011924 271 -KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSM-TGKTIASLCGHL 347 (475)
Q Consensus 271 -~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~ 347 (475)
....|.++|. ++.++|=+. .+++++ |..++||... ...++..+..+.
T Consensus 392 ~~~~~h~g~v~-----------------------------~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 392 STFITHIGPVY-----------------------------AVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred ccccccCcceE-----------------------------eeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 2223778888 999999554 444554 8999999977 677788888888
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 348 DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 348 ~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+.+++++||| ....|+++..+|.+.|||+... ..++...+-.....+.+.|++.|++|++|...|.+++|++..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999 5678899999999999999752 346666655566778899999999999999999999999864
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=130.10 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=138.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~ 325 (475)
.++++-..|.|++||..+++.+..|. ++..++ .+.|.. .+..+.+++.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-----------------------------~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-----------------------------GVRFISCDSPHGVISCSS 92 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCccc-----------------------------ceEEecCCCCCeeEEecc
Confidence 36677788999999999999999998 666666 677765 5677899999
Q ss_pred CCcEEEEECCCCceEEE--eecCC-CCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCCceEEEE-ecCCCceEEEE
Q 011924 326 NPDGLLVDSMTGKTIAS--LCGHL-DFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVL-KGNLGAIRSIR 397 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~--l~~h~-~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~ 397 (475)
||+|++||+|+.....+ +.+++ .+..+++..-.++.+++|.. +-.|.+||+|+..+++..+ ..|..-|++++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 99999999997655444 44555 34556666657888888853 6689999999977756555 45889999999
Q ss_pred EccC-CCEEEEEcCCCeEEEEECCCCe---eEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 398 YTSD-GRYMATAEPADFVHVYDVKSGY---EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 398 ~spd-g~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
|+|. -+.|++||.||.|.|||++... .+.....+...|..+.|..++ +.|.+-+...++
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCce
Confidence 9995 4799999999999999997653 234455677889999999887 346665655544
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=151.16 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=173.9
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+|..+ .|.++++|+.|..++||..++ ..|.....+|.+.++.++. +.++. +++++|+|..|++|.+..+
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et---~~~lAs~rGhs~ditdlav--s~~n~-~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMET---ARCLASCRGHSGDITDLAV--SSNNT-MIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccc---hhhhccCCCCccccchhcc--chhhh-hhhhcccCceEEEEecCCC
Confidence 46999999 799999999999999999765 3445777899999999998 76665 5999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC---------
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--------- 337 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--------- 337 (475)
.++..+. |.+.|+ +++|+|-. +.+.||++++||.+-.
T Consensus 265 ~pvsvLrghtgavt-----------------------------aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVT-----------------------------AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chHHHHhcccccee-----------------------------eeccCccc----cCCCCCceEeccccccccccCCCCC
Confidence 9988776 888999 88999843 6778899999987711
Q ss_pred -----ceEEEe----------ecC------CCCeEEEEEecCCCEEE-----------EEeCCCeEEEEECCCCCceEEE
Q 011924 338 -----KTIASL----------CGH------LDFSFASAWHPNGVTFA-----------TGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 338 -----~~~~~l----------~~h------~~~v~~~~~sp~g~~l~-----------t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
..+..+ .+- .-..-+++|...+-.++ ++-.+-.+.+|++.. +...+.
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~ 390 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHN 390 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhh
Confidence 011111 000 00112233433333333 333455678898866 788899
Q ss_pred EecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 386 LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 386 ~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
+.+|...+..+.++| +-+...+++.||...|||+..|.+++.+....+.+...+||+||..++..- ..|.++-++.
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd---~hgql~i~g~ 467 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD---DHGQLYILGT 467 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC---CCCceEEecc
Confidence 999999999999999 456667899999999999999988777765577888999999998887643 2344444444
Q ss_pred ec
Q 011924 465 CR 466 (475)
Q Consensus 465 ~~ 466 (475)
+.
T Consensus 468 gq 469 (1113)
T KOG0644|consen 468 GQ 469 (1113)
T ss_pred CC
Confidence 43
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.6e-13 Score=135.32 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=143.6
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+.+.+| +++.|+..+.. ..|++|++...... .+ ....+...+..| +|+|+.++++.+.++ .|.+||
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l-~~~~g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV-ASFRGINGAPSF--SPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee-ccCCCCccCceE--CCCCCEEEEEEeCCCCceEEEEE
Confidence 4556666 78888877643 47999999765432 12 222344456778 999998667766666 589999
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CC--cEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NP--DGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~ 340 (475)
+.+++......+..... .++|+|+|+.|+.++. .+ .|+++++.+++.
T Consensus 279 ~~~g~~~~lt~~~~~~~-----------------------------~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~- 328 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDT-----------------------------EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA- 328 (433)
T ss_pred CCCCCeEECccCCCCcc-----------------------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 98877544333333334 6789999999888764 33 477778777664
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i 414 (475)
..+..+......++|+|+|++|+..+.++ .|.+||+.. +... .+.. ......+.|+|||++|+..+.+ ..|
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 33333344555789999999998876543 699999965 4433 4432 2244578999999988877653 468
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
.++++.. .....+..+.+.+..++|+|
T Consensus 406 ~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECCC-CceEEcccCCCCCCCCccCC
Confidence 8888754 44555555667888889987
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=3.5e-14 Score=134.93 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=138.9
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg 327 (475)
.|+.+++||.+.+.+- .++.-+... |.+.+. |-.|+|+|.-|++++.||
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-----------------------------~gRW~~dGtgLlt~GEDG 126 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAIS-----------------------------SGRWSPDGAGLLTAGEDG 126 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-----------------------------hcccCCCCceeeeecCCc
Confidence 4778889999888764 334434444 777777 889999999999999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE
Q 011924 328 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
.|++|. ++|-...++.....+|+|++|.|+++-++.+. .+.+.|=.+.. ...+-.+++|.+-|.++.|+|....+++
T Consensus 127 ~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 127 VIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred eEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccccceee
Confidence 999998 67776666666778999999999887776663 45677777755 5567778999999999999999999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
|+.|-..+||| ..|..+..-..|.-+|++++|.|+ +..++++..
T Consensus 204 gGED~kfKvWD-~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 204 GGEDFRFKIWD-AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred cCCceeEEeec-ccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence 99999999999 457777777789999999999999 666666543
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.3e-13 Score=125.35 Aligned_cols=230 Identities=13% Similarity=0.177 Sum_probs=158.5
Q ss_pred ceeEEEEEEcC--cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAVKD--KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~~~--~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
...+.-++|.. ..+++++.|-.|++++-..... ..+.......|.+++| -|.+...|+.|.. +.|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclaw--RPlsaselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAW--RPLSASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEe--ccCCcceeeeeec-ceeEEEEcCc
Confidence 34566777744 3467788999999998665222 3555566778999999 8887776777754 5589997643
Q ss_pred -Ceeee-----------eee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEE
Q 011924 267 -YQLSK-----------HFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLL 331 (475)
Q Consensus 267 -~~~~~-----------~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~i 331 (475)
...-+ .++ ...+|+ +++|++||..+++++ .+..|.|
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVt-----------------------------smqwn~dgt~l~tAS~gsssi~i 222 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVT-----------------------------SMQWNEDGTILVTASFGSSSIMI 222 (445)
T ss_pred ccccccccccccccchhheeCCCCceee-----------------------------EEEEcCCCCEEeecccCcceEEE
Confidence 11111 111 123444 999999999999987 5678999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
||..++..+....--.+.+.-+.|||||.+|.++.-|+..++|...+.....+-. ...+.|....|+|.|++|..++..
T Consensus 223 Wdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 223 WDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred EcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 9999887665443345678889999999999999999999999765533333333 345589999999999988766543
Q ss_pred CeEEEEECCC----C-------eeEEEEe----------c---cCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 412 DFVHVYDVKS----G-------YEKEQEI----------D---FFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g~i~iwd~~~----~-------~~~~~~~----------~---~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.-++|.+.- + .....+. + ..+++.+++|.|.|++|++.-..+.
T Consensus 302 -sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 302 -SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred -CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 244444321 0 0001111 0 2368999999999999998754433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=125.88 Aligned_cols=185 Identities=16% Similarity=0.227 Sum_probs=134.3
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
.-+..++| ++.-.. ++++.+|-.|++|+-.. +....++ ....|+ |
T Consensus 99 ~dlr~~aW--hqH~~~-fava~nddvVriy~kss-t~pt~Lks~sQrnvt-----------------------------c 145 (445)
T KOG2139|consen 99 IDLRGVAW--HQHIIA-FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVT-----------------------------C 145 (445)
T ss_pred cceeeEee--chhhhh-hhhhccCcEEEEeccCC-CCCceecchhhccee-----------------------------E
Confidence 34677888 664333 77888999999999765 4444454 345666 9
Q ss_pred EEECC-CCcEEEEEeCCCcEEEEECCC-C---ce----------EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEE
Q 011924 311 SSQSP-DGKLLIIVGDNPDGLLVDSMT-G---KT----------IASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIW 374 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~~dg~i~iwd~~~-~---~~----------~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iw 374 (475)
++|.| .++.|++|...| |.+|.... + +. +..-.|| .+|++++|.+||..+++++- +..|.||
T Consensus 146 lawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 146 LAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred EEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 99999 556677776655 89997642 1 11 1122345 68999999999999999986 6789999
Q ss_pred ECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
|... +..+....-..+.++-+.|||||.+|.+++.|+..++|+.........-....+.|...+|+|+|++|+.++.-
T Consensus 224 dpdt-g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 224 DPDT-GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred cCCC-CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC
Confidence 9976 44443333455688999999999999999999999999654433332333345699999999999998866543
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.5e-12 Score=111.11 Aligned_cols=229 Identities=15% Similarity=0.150 Sum_probs=157.3
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc-eEEE---------eeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV-SFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~-~~~~---------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
.+..+|+.|++...+|++|+. |.|+-|....... ..+. +.-.-.-..|+++.+ .|..+. ++.++.|
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enS-i~~AgGD 135 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENS-ILFAGGD 135 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCc-EEEecCC
Confidence 355699999998888888875 9999998754332 1111 111122345888888 776666 4444489
Q ss_pred CeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 257 CGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
+.++.||+++|+..+.++ |...+. ++.-......+++|+.||++++||.+
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYvH-----------------------------~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYVH-----------------------------SVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCcceee-----------------------------eeeecccCcceeecCCCccEEEEecc
Confidence 999999999999999999 888888 88876666678999999999999999
Q ss_pred CCceEEEeecCC----------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE
Q 011924 336 TGKTIASLCGHL----------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 336 ~~~~~~~l~~h~----------~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
+++.+..+.... .+|.+++- +...+++|+. ..+.+|.++. .++..++.- .+.+..+.|-.+ .+
T Consensus 187 t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CV 259 (325)
T ss_pred ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccC-CCceEEEec-ccceeEeeeecc--eE
Confidence 999998876421 24555555 5567777754 5699999987 666666653 346778888654 56
Q ss_pred EEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 406 ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
++++..+.|.-|-+. |.....+...........|+..- ++|-+++....+
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~ 310 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKL 310 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceee
Confidence 667766778888864 44444433323334455554332 444445554444
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.2e-12 Score=117.67 Aligned_cols=293 Identities=13% Similarity=0.032 Sum_probs=194.7
Q ss_pred EEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE-EEEEecCceEEE
Q 011924 137 VWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL-LVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~-lvsg~~dg~i~v 213 (475)
.+++.++.|...+++.+.+=++.+-+...++.. -.+|.-+.| +..+ |.....++.|.+
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-------------------HHHhhheeeeccceeeeeeeeccceEEE
Confidence 367777888888888888777665443322111 013445555 4444 445567889999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee--eee-ccccEEeccCCceEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HFR-FPWPVNVSSSYCIILL 290 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-~~~~v~~s~~~~~l~~ 290 (475)
|++..++.. -......+.+.++.| ||+|+.++.+..-+-.|.+|.+.+.+... ..+ ....+.|+++|+..+.
T Consensus 76 wsl~Qpew~---ckIdeg~agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 76 WSLVQPEWY---CKIDEGQAGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEeecceeE---EEeccCCCcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeee
Confidence 999877655 233455667889999 99998888899999999999998755432 111 2345567777765531
Q ss_pred ------------------------------------------EEEeecccceE---EEEeeeeeeEEECCCCcEEEEEeC
Q 011924 291 ------------------------------------------CRLLNFMTEKV---IICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 291 ------------------------------------------~~v~d~~~~~~---~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
+-|||---.-. ......+..++|+|.+++|++|+.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 22333322111 122234568899999999999999
Q ss_pred CCcEEEEECCCCceE------------------------------------------------------------EEeec
Q 011924 326 NPDGLLVDSMTGKTI------------------------------------------------------------ASLCG 345 (475)
Q Consensus 326 dg~i~iwd~~~~~~~------------------------------------------------------------~~l~~ 345 (475)
|+.+++.+--+-++. +.++.
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 998887542211100 01110
Q ss_pred ------CCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 346 ------HLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 346 ------h~~~v~~~~~sp~g~~l~t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
..-.+.-++|++|..+++|-+. -..+-+||+++ .+....+ ....+|+...|+|....|+.+.....+++|
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 0113456899999999998865 35799999986 3333333 345689999999998888888777789999
Q ss_pred ECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 418 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 418 d~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
....... .......-.|..+.|.-+|..|+..+.|.-.
T Consensus 389 ~psg~~~-V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 389 APSGPRV-VGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCCceE-EecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 9665333 3333344579999999999999999888543
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=7.9e-14 Score=124.88 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=154.1
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe---eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
...+|+|.+| ++++.. ++.+.+...|.||.....+ ..+++. |...++
T Consensus 9 ~~~pitchAw--n~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vt-------------------------- 59 (361)
T KOG1523|consen 9 LLEPITCHAW--NSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVT-------------------------- 59 (361)
T ss_pred ccCceeeeee--cCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCccee--------------------------
Confidence 3457899999 999986 7777788899999886654 455565 888888
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-- 381 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-- 381 (475)
++.|+|..+.|++++.|..-++|....+ ++...|..+...++++.|+|.++.||+|+....|.||-++....
T Consensus 60 ---gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 60 ---GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred ---EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 9999999999999999999999998433 34556666889999999999999999999999999998864211
Q ss_pred -eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC-----C-------------CeeEEEEeccCCCeEEEEEcC
Q 011924 382 -SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK-----S-------------GYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 382 -~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~fsp 442 (475)
..+.-+.+.+.|+++.|+|++-.|++|+.|+..+||..- . |....++....|.+.++.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 223334566789999999999999999999999999641 1 111222223457899999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|..|+-.+.|.++.
T Consensus 217 sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVS 231 (361)
T ss_pred CCCEeeEecCCCceE
Confidence 999999888887653
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.4e-12 Score=129.52 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=145.1
Q ss_pred eEEEEEE--cCcEEEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe--EEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~--v~iwd 263 (475)
.+.+.+| +|+.|+..+. +..|.+|++...... ....+.+.+....| +|+|+.++++.+.++. |.+||
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEE--CCCCCEEEEEEecCCCceEEEEE
Confidence 5677777 8888887653 468999999765432 22234455667778 9999986777776665 77778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++......+..... ..+|+|+|+.|+.++. + ..|+++|+.++..
T Consensus 277 ~~~~~~~~Lt~~~~~~~-----------------------------~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~- 326 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDT-----------------------------SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP- 326 (435)
T ss_pred CCCCceEEccCCCCccC-----------------------------ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence 88776644333444444 7799999999988764 2 3688889876554
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC------
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------ 411 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------ 411 (475)
..+..+...+....|+|+|+.|+..+.+ ..|.+||+.. + ....+.. ...+..+.|+|||++|+..+.+
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 4454445566778999999999887653 3688888753 2 3344433 2346788999999998876543
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
..|.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 3688889876544 3333 4566788888873
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=3.4e-13 Score=119.39 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=102.4
Q ss_pred eEEECCCCcEEEEEeC----------CCcEEEEECC-CCceEEEeec-CCCCeEEEEEecCCCEEEEE--eCCCeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGD----------NPDGLLVDSM-TGKTIASLCG-HLDFSFASAWHPNGVTFATG--NQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~----------dg~i~iwd~~-~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~--s~dg~v~iwd 375 (475)
.+.|+|+|..|++-.. -+...||.++ .+.++..+.- ..++|.+++|+|+|+.||+. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 6789999988876533 1334455543 2334444543 34579999999999987654 4577999999
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
++ .+.+..+. ...+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..++.++|||||++|++++.
T Consensus 90 ~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 90 VK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred Cc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 96 56666664 4577899999999999998753 679999999877765543 3 34789999999999999876
Q ss_pred c
Q 011924 453 D 453 (475)
Q Consensus 453 D 453 (475)
.
T Consensus 164 ~ 164 (194)
T PF08662_consen 164 S 164 (194)
T ss_pred c
Confidence 4
No 219
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=131.22 Aligned_cols=257 Identities=18% Similarity=0.152 Sum_probs=180.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
++++++.. ....|.|+...+.. |...+.+|..++..+.+..++.....+.+++.+|.|++||...+.+++++....
T Consensus 27 D~k~l~~~-~~~~V~VyS~~Tg~---~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 27 DAKFLFLC-TGNFVKVYSTATGE---CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred CCcEEEEe-eCCEEEEEecchHh---hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 56555554 56789999987644 346888999999999995555443457899999999999999999988887433
Q ss_pred cEE---eccCCc---eEE-----EEEEeecccceEEE--------Eee-----------eeeeEEECCCCcEEEEEeCCC
Q 011924 278 PVN---VSSSYC---IIL-----LCRLLNFMTEKVII--------CLL-----------CLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 278 ~v~---~s~~~~---~l~-----~~~v~d~~~~~~~~--------~~~-----------~i~~~~~sp~g~~l~~~~~dg 327 (475)
++. +.+..- ..+ ..++....+.+... +.. .-.++.+++.|...+.... .
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~-~ 181 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM-C 181 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe-e
Confidence 332 111100 011 01111111111100 000 1137788888887777644 5
Q ss_pred cEEEEECCCCceEEEe----ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---CCceEEEEecCCCceEEEEEcc
Q 011924 328 DGLLVDSMTGKTIASL----CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---LSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l----~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~sp 400 (475)
.+++|....+...... ..|.-.+.+.++||+++++|+|..||.|.+|.--. .......+.-|...|.+++|++
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~ 261 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS 261 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence 6889988765411111 23677789999999999999999999999996432 1224556666888999999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
+|.+|++|+..+.+.+|.+.+++ ..-+....++|..+.+|||+.+.++...|..+.-+.
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 99999999999999999999987 444455678999999999999999999998875443
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.6e-12 Score=130.13 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=139.0
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE--
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-- 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd-- 263 (475)
.+.+.+| +|+.|+..+.. ..|.+|++...... .+. ...+.+.+..| +|+|+.++++.+.++...+|.
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l~-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VVA-NFKGSNSAPAW--SPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Eee-cCCCCccceEE--CCCCCEEEEEEccCCCceEEEEE
Confidence 4556666 88888876643 46999999765433 221 22344567778 999998666777888766665
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEE--ECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLV--DSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iw--d~~~~~~~ 340 (475)
+..+.......+..... ...|+|||+.|+.++. .+...|| ++.+++.
T Consensus 271 ~~~~~~~~lt~~~~~~~-----------------------------~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~- 320 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDT-----------------------------EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA- 320 (427)
T ss_pred CCCCCcEECCCCCCCCc-----------------------------CeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-
Confidence 44444322222333334 6789999999887664 3455555 4445543
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i 414 (475)
..+..+.......+|+|+|++|+..+.++ .|.+||+.. +.. ..+... .....+.|+|||++|+.++.++ .+
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDT-TRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCC-CCccCceECCCCCEEEEEEecCCCEEE
Confidence 33332333455689999999999877654 699999965 443 333322 2346789999999998877543 46
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+.++ +|.....+..+.+.+...+|+|-
T Consensus 398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 67776 45555566667788899999984
No 221
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.9e-12 Score=127.37 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=175.6
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEE
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELIC 213 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~v 213 (475)
+.++.+.+....+...+..+..|....+. .......- . ..+.-...+.++++.++++++|..+|+|.+
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~----~-------~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDI----T-------VHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchh----h-------hhhcccceeEEeccccceEEEeccCCcEEE
Confidence 44556666666666777888888866544 11111100 0 011111233444449999999999999999
Q ss_pred EeCCC-CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEE
Q 011924 214 KHLDR-PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 214 w~~~~-~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~ 292 (475)
|.--. ........+++=|...|+++.| +++|.+ |++|+..|.+-+|.+.+++...--+...++.
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~f--S~~G~~-LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~------------ 296 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSF--SSDGAY-LLSGGREGVLVLWQLETGKKQFLPRLGSPIL------------ 296 (792)
T ss_pred EeccccccccccceEEEecccccceeEE--ecCCce-EeecccceEEEEEeecCCCcccccccCCeeE------------
Confidence 97433 3334445666778889999999 999997 9999999999999999988333333677888
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-----------CCCCeEEEEEecCCCE
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-----------HLDFSFASAWHPNGVT 361 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-----------h~~~v~~~~~sp~g~~ 361 (475)
.+.+|||+.+.++...|..|.+....+.....++.| ..+-.+.++++|..+.
T Consensus 297 -----------------~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 297 -----------------HIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred -----------------EEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 999999999999999999999987754332222222 1223344555664444
Q ss_pred EEEEeCCCeEEEEECCCCC-------------------------------------------------------------
Q 011924 362 FATGNQDKTCRIWDLRNLS------------------------------------------------------------- 380 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~------------------------------------------------------------- 380 (475)
++-.+..|+|.+||+-+..
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 5555555555555543210
Q ss_pred -c----e-EEEEecCCCceEEEEEcc-CCC-EEEEEcCCCeEEEEECCCC---------e-eEEEEeccCCCeEEEEEcC
Q 011924 381 -E----S-VAVLKGNLGAIRSIRYTS-DGR-YMATAEPADFVHVYDVKSG---------Y-EKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 381 -~----~-~~~~~~~~~~v~~l~~sp-dg~-~la~~~~dg~i~iwd~~~~---------~-~~~~~~~~~~~i~~l~fsp 442 (475)
. + .....+|...+...+|.+ ... .+++++.||.++||-+... . +...-.-|..++..++||.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 0 0 111123444444444433 333 7889999999999987322 1 2222223678999999999
Q ss_pred CCCeEEEEE
Q 011924 443 DTESLFIGV 451 (475)
Q Consensus 443 dg~~l~~~~ 451 (475)
||..|+++-
T Consensus 520 dGslla~s~ 528 (792)
T KOG1963|consen 520 DGSLLAVSF 528 (792)
T ss_pred CCcEEEEec
Confidence 998777663
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-12 Score=134.03 Aligned_cols=233 Identities=11% Similarity=0.098 Sum_probs=159.2
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CC----Ceeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK----YQLSKH 272 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~----~~~~~~ 272 (475)
-...++++...-.|+|||...+...............|+.+.+..-.+. .++++|+.||.||||+- .. .+++..
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEecccccccCCceeEEe
Confidence 4556777777789999999876644222222233456888887644444 46999999999999963 22 223322
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~ 351 (475)
+..-......+.+ ++ --+.|.....+|+++|+-..|+|||....+.++.+.. ....++
T Consensus 1154 w~~Ls~~~~~~r~------------~~---------~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARG------------TG---------LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred eccccccCccCCC------------CC---------eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 2211100000000 00 0457888666777777788999999988877776653 334455
Q ss_pred EEEEe-cCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCc--eEEEEEccCCC-EEEEEcCCCeEEEEECCCCeeE
Q 011924 352 ASAWH-PNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGR-YMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 352 ~~~~s-p~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~--v~~l~~spdg~-~la~~~~dg~i~iwd~~~~~~~ 425 (475)
++.-+ +.|+.+++|..||.|++||.|.... .+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.....
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 55433 2689999999999999999987544 77888888876 99999998774 5999999999999999874211
Q ss_pred --EEEeccC--C-CeEEEEEcCCCCeEEEEEe
Q 011924 426 --EQEIDFF--G-EISGISFSPDTESLFIGVW 452 (475)
Q Consensus 426 --~~~~~~~--~-~i~~l~fspdg~~l~~~~~ 452 (475)
.++..|. | .++++..++....||+|+.
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 1222232 4 5999999999999999986
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-12 Score=134.08 Aligned_cols=254 Identities=16% Similarity=0.140 Sum_probs=173.0
Q ss_pred CCCCCCCCCCCccccccce--eEEEEEE---cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEe
Q 011924 172 HVAPSEKHPGSLLEGFTQT--QVSTLAV---KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYG 242 (475)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~--~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~ 242 (475)
...+.+...|.++.+++.+ .|..++. ++.++++|+.||+|++|++.... ...+..+..-..+.+.++.+
T Consensus 1029 ~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-- 1106 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-- 1106 (1431)
T ss_pred CCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--
Confidence 3444455667777777653 5666666 55899999999999999985432 22333333436778889988
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeee-------eeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLS-------KHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~-------~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.++++. ++.++.||.|++.++...... +... ..+.+. ..-++
T Consensus 1107 ~~~~~~-~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv----------------------------~m~a~ 1157 (1431)
T KOG1240|consen 1107 CGNGDQ-FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVV----------------------------SMHAF 1157 (1431)
T ss_pred ccCCCe-EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceE----------------------------Eeecc
Confidence 888887 888899999999998763211 1111 111111 02223
Q ss_pred CC-CCc-EEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-
Q 011924 314 SP-DGK-LLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG- 388 (475)
Q Consensus 314 sp-~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~- 388 (475)
.. .+. .|+.+...+.|..||+++.....+++. ..+.|++++.+|.++++++|+..|.+.+||+|- +.++..+..
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc
Confidence 22 333 778888889999999997766665553 347899999999999999999999999999986 666666653
Q ss_pred CCCceEEEEEccCC---CEEEEEc--CCCeEEEEECCCCeeEEEEeccC-----------------CC--eEEEEEcCCC
Q 011924 389 NLGAIRSIRYTSDG---RYMATAE--PADFVHVYDVKSGYEKEQEIDFF-----------------GE--ISGISFSPDT 444 (475)
Q Consensus 389 ~~~~v~~l~~spdg---~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~-----------------~~--i~~l~fspdg 444 (475)
+..+++.+..+|-- ...++++ ..+.|.+|++.+|.+...+.... .. .....+..-+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 44678888777732 3555444 47889999999997666554321 11 1122333445
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
..+++|+.|..++
T Consensus 1317 ~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIR 1329 (1431)
T ss_pred ceeeecCCcccee
Confidence 6788888888776
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=8e-11 Score=114.70 Aligned_cols=283 Identities=17% Similarity=0.169 Sum_probs=170.1
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
.+++|.+.+..+.+....+...+. .+....++.+++++++.+.+|.|.++|+.+.+.......
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~----------------~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~- 76 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA----------------PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV- 76 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT----------------EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC----------------ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-
Confidence 458889999888776655543211 011122233899999999999999999998875532222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-----------ccEEeccCCceEE-------E
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-----------WPVNVSSSYCIIL-------L 290 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~s~~~~~l~-------~ 290 (475)
+ .....+++ |++|++++++....+.+.++|.++.+.++.+... ..+..++...... .
T Consensus 77 -G--~~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 77 -G--GNPRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp -S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred -C--CCcceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 2 23466777 9999997777788999999999999988877621 1233455555332 1
Q ss_pred EEEeecccceEE-----EEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeec----CCCCeEEE-------
Q 011924 291 CRLLNFMTEKVI-----ICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCG----HLDFSFAS------- 353 (475)
Q Consensus 291 ~~v~d~~~~~~~-----~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~----h~~~v~~~------- 353 (475)
+-+.|....+.. ..........|+|++++++++ ..+..+-++|..+++.+..+.. |..++..+
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcce
Confidence 223343332221 112245678999999988775 4567899999999888766542 33333332
Q ss_pred EEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE----cCCCeEEEEECCCCeeEEE
Q 011924 354 AWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA----EPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 354 ~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~----~~dg~i~iwd~~~~~~~~~ 427 (475)
.|.. .+...++.-....+.+||..+ .+.++.+....++ ..++-+|++++|.+. ...+.|.|+|.++.+....
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-
T ss_pred EEeeccccceecccccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE
Confidence 2322 222222222233566788876 7889999887666 688899999999988 3457999999999866655
Q ss_pred EeccC-CCeEEEEEcCCCCeEEEEEecCC
Q 011924 428 EIDFF-GEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 428 ~~~~~-~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+.... ..+..+.|+++|+.+.++.|+..
T Consensus 310 i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 310 ITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 54322 35999999999999999999876
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=9.7e-12 Score=124.81 Aligned_cols=211 Identities=22% Similarity=0.215 Sum_probs=142.9
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.+++....... ....+...+....| +|+|+.++++...+ ..|++|++.+++..........+.
T Consensus 170 ~~l~~~d~~g~~~~----~l~~~~~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~------ 237 (417)
T TIGR02800 170 YELQVADYDGANPQ----TITRSREPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG------ 237 (417)
T ss_pred ceEEEEcCCCCCCE----EeecCCCceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc------
Confidence 35777776533322 22345556777778 99999855444332 479999998876554444445555
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCC--CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDN--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d--g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|+|+.|+.. +.+ ..|++|++.+++. ..+..+.......+|+|+|+.|+
T Consensus 238 -----------------------~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 238 -----------------------APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred -----------------------ceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEE
Confidence 77999999987754 333 4689999887754 44554555556789999999887
Q ss_pred EEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+. .+ .|.++|+.. ++ ...+..+...+..+.|+|+|++|+.++.++ .|.+||+.++... .+.. ......
T Consensus 294 ~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~ 369 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDES 369 (417)
T ss_pred EEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCC
Confidence 7654 33 577778764 33 344444455677889999999999887765 7999999876442 2222 233456
Q ss_pred EEEcCCCCeEEEEEecCCcceE
Q 011924 438 ISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~l 459 (475)
..|+|||++|+.++.++....+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEE
Confidence 7899999999988877655433
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.3e-14 Score=132.99 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=179.1
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
++..+.++.+ -..+.+-.++..+.+...-+++- -.|..+.| +.++++++ ...-++||
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LHneq~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLHNEQFFAVA-QKKYVYVY 196 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhcchHHHHhh-hhceEEEe
Confidence 4433333333 23455666666666554444332 24667777 45555554 66778888
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
|-...+ ..|.+. ...|..+.| -|.- ++|++++..|.++--|+.+|+++..+. ..+.+.
T Consensus 197 D~~GtE-lHClk~----~~~v~rLeF--LPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~------------- 255 (545)
T KOG1272|consen 197 DNNGTE-LHCLKR----HIRVARLEF--LPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD------------- 255 (545)
T ss_pred cCCCcE-Eeehhh----cCchhhhcc--cchh-heeeecccCCceEEEeechhhhhHHHHccCCccc-------------
Confidence 854322 333322 345788888 6664 578999999999999999999998887 566777
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.++-+|-...+-+|..+|+|.+|......++..+-.|.++|.++++.|+|+|+||++.|..|+|
T Consensus 256 ----------------vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 256 ----------------VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred ----------------hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence 7889998889999999999999999999999888899999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC-CC--CeeEEEEecc--CCCeEEEEEcCCCCeEE
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KS--GYEKEQEIDF--FGEISGISFSPDTESLF 448 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-~~--~~~~~~~~~~--~~~i~~l~fspdg~~l~ 448 (475)
||+|+..++ .++.. .-+...++||..| .||.+ ....|.||-- -. +....-+..| .+.|.++.|.|-...|-
T Consensus 320 WDlR~~~ql-~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG 395 (545)
T KOG1272|consen 320 WDLRNFYQL-HTYRT-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG 395 (545)
T ss_pred eeecccccc-ceeec-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence 999986544 44433 3356788898766 44444 4456999952 22 1111222233 47899999999766665
Q ss_pred EEE
Q 011924 449 IGV 451 (475)
Q Consensus 449 ~~~ 451 (475)
+|-
T Consensus 396 IGH 398 (545)
T KOG1272|consen 396 IGH 398 (545)
T ss_pred ccc
Confidence 553
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=129.52 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=151.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.+.|.||+| +|.+|++|+.|-.+.|||.-..+.. ..+-.+|.+.|-++.|....++ .++++|..|..|++||+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCC-eEEEeccCcceEEEEecc
Confidence 3357999999 9999999999999999998755544 4556689999999999755454 469999999999999997
Q ss_pred CCe----------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEE
Q 011924 266 KYQ----------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVD 333 (475)
Q Consensus 266 ~~~----------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd 333 (475)
..+ ..+.+. |...|. .++..|++ ..+.+++.||+|+-+|
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVK-----------------------------ria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVK-----------------------------RIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhh-----------------------------heecCCCCCceEEEecCCcceeeec
Confidence 421 111222 444555 77888877 7889999999999999
Q ss_pred CCCCce-------EEE---eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC-----------------ceEEE
Q 011924 334 SMTGKT-------IAS---LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS-----------------ESVAV 385 (475)
Q Consensus 334 ~~~~~~-------~~~---l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~-----------------~~~~~ 385 (475)
++.... ... +....-...|+..+| +..+||+|+.|-..++||.|... .++..
T Consensus 177 iREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y 256 (758)
T KOG1310|consen 177 IREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY 256 (758)
T ss_pred ccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence 985321 111 111223467899999 67899999999999999954211 12333
Q ss_pred Eec-CC-----------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 386 LKG-NL-----------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 386 ~~~-~~-----------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+.. |. ..++-+.|+|+|..|++.-....|+++|+..++.+..+.
T Consensus 257 f~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 257 FSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 321 11 125678899999877766666689999998877655544
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.8e-11 Score=122.89 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=139.8
Q ss_pred EEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEEC
Q 011924 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 264 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~ 264 (475)
+.+.+| +|++|+.+... ..|++|++.+..... ...+.+.+.++.| +|+|+.++++.+.++ .|.+|++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEE--CCCCCEEEEEECCCCCccEEEEEC
Confidence 444455 88888877644 479999997654331 1223444566777 999998666665554 5888898
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---CcEEEEECCCCceEE
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~ 341 (475)
.+++......+..... ..+|+|+|+.|+.++.. ..|+++++.+++. .
T Consensus 266 ~~~~~~~l~~~~~~~~-----------------------------~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~ 315 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDT-----------------------------EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R 315 (417)
T ss_pred CCCCEEECCCCCCCCC-----------------------------CEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E
Confidence 8766544333433334 66899999988876543 2688888877664 4
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVH 415 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~ 415 (475)
.+..+...+..+.|+|+|++++.++.++ .|.+||+.. +. ...+... .......|+|+|++|+.++.++ .+.
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 4554566777889999999999988876 789999875 33 3333332 2345678999999988877654 466
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+.+. ++.....+....+.+..++|+
T Consensus 393 ~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 393 LVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred EEEC-CCceeeECCCCCCCcCCCCCC
Confidence 6664 344455554445666666654
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3e-12 Score=117.74 Aligned_cols=234 Identities=15% Similarity=0.104 Sum_probs=169.3
Q ss_pred eeEEEEEE--c--CcEEEEEecCceEEEEeCCCCCceEE---EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 190 TQVSTLAV--K--DKLLVAGGFQGELICKHLDRPGVSFC---SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 190 ~~v~~l~~--~--~~~lvsg~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
..|+.++| + ...|+..+.+-.+....+...+.... ........+.|..+.. .+| . |++|-.+|.+.+|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg-~-Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG-T-LITCVSSGNLQVR 130 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC-E-EEEEecCCcEEEE
Confidence 36777777 3 33444444555555555443332211 1122333445555544 244 3 7777889999999
Q ss_pred ECCCCe----eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCC--CcEEEEECC
Q 011924 263 DMGKYQ----LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDN--PDGLLVDSM 335 (475)
Q Consensus 263 d~~~~~----~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d--g~i~iwd~~ 335 (475)
..+.+. ....+....++. .+.-.|.. ..+++||.. ..+.|||+.
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~-----------------------------~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLY-----------------------------DVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred eccCCccccccceeeecCCcee-----------------------------eeccCCCCCceEecCchhcccceeeeecc
Confidence 987443 222233333444 55666644 455668877 789999999
Q ss_pred CCceEEEeecC---------CCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 336 TGKTIASLCGH---------LDFSFASAWHPN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 336 ~~~~~~~l~~h---------~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
+.+++.+-+.- .-+++++.|-|. ...||+++.-+.||+||.+...+|+..+.-...+++++...|+|++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 88665544321 235678899886 8899999999999999999888899999988889999999999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++|..-+.+..||++++..+.. +.+..|.|++|..+|.+++|++++-|+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 99999999999999999988776 677889999999999999999999997664
No 230
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.6e-11 Score=121.03 Aligned_cols=210 Identities=18% Similarity=0.139 Sum_probs=131.8
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeE--EEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccC
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH--FTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~--l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
..|.+.|.+..... .++. .......-.| ||+|+.+ ++++..++ .|.+.++.+++..+....+....
T Consensus 165 ~~l~~~d~dG~~~~---~lt~-~~~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~---- 234 (428)
T PRK01029 165 GELWSVDYDGQNLR---PLTQ-EHSLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL---- 234 (428)
T ss_pred ceEEEEcCCCCCce---Eccc-CCCCcccceE--ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc----
Confidence 45666666543332 2222 3334455677 9999752 23444444 57777888776544443444444
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CC--cEE--EEECCC---CceEEEeecCCCCeEEEEEe
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NP--DGL--LVDSMT---GKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg--~i~--iwd~~~---~~~~~~l~~h~~~v~~~~~s 356 (475)
..+|||||+.|+..+. .| .++ +|++.. ++......++.......+|+
T Consensus 235 -------------------------~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 235 -------------------------MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred -------------------------ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 6789999999887653 22 343 467664 23333333333445678999
Q ss_pred cCCCEEEEEe-CCCeEEEEE--CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEec
Q 011924 357 PNGVTFATGN-QDKTCRIWD--LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 357 p~g~~l~t~s-~dg~v~iwd--~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~ 430 (475)
|||+.|+..+ .+|...||. +...+.....+......+....|||||+.|+..+.. ..|.+||+.++... .+..
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~ 368 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTT 368 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccC
Confidence 9999888766 466555554 432223345555555567789999999998876543 46999999888654 3333
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 431 FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
....+..+.|+|||+.|+....++
T Consensus 369 ~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 369 SPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCC
Confidence 345678899999999998765543
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.9e-11 Score=121.68 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=137.1
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.|.++|.+..... ....+...+....| +|+|+.+++++..+ ..|.+|++.+++............
T Consensus 180 ~l~~~d~~g~~~~----~l~~~~~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~------- 246 (430)
T PRK00178 180 TLQRSDYDGARAV----TLLQSREPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG------- 246 (430)
T ss_pred EEEEECCCCCCce----EEecCCCceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-------
Confidence 4666666543322 22234556777888 99999855554333 368899998876544333344444
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
..+|+|+|+.|+.. ..++ .|++||+.+++. ..+..+........|+|+|+.|+.
T Consensus 247 ----------------------~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f 303 (430)
T PRK00178 247 ----------------------APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYF 303 (430)
T ss_pred ----------------------CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEE
Confidence 67899999988754 3344 688899987764 446556666677899999998876
Q ss_pred EeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 365 GNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 365 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.+. ++ .|.++|+.. ++. ..+..........+|+|+|++|+..+.. + .|.+||+.++... .+. ........
T Consensus 304 ~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p 379 (430)
T PRK00178 304 TSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESP 379 (430)
T ss_pred EECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCc
Confidence 654 33 577778754 332 3332222234467899999999877653 2 5888999887543 232 22233467
Q ss_pred EEcCCCCeEEEEEecCCcceEE
Q 011924 439 SFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ll 460 (475)
.|+|||+.|+.++.++....+.
T Consensus 380 ~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 380 SVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eECCCCCEEEEEEecCCceEEE
Confidence 8999999999887765444333
No 232
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=9.6e-14 Score=138.21 Aligned_cols=267 Identities=15% Similarity=0.167 Sum_probs=174.5
Q ss_pred cceeeecccceeE-EecCCCeEEEecC-CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc
Q 011924 125 KSTILHFQLRNLV-WATSKHDVYLMSH-FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK 200 (475)
Q Consensus 125 ~~~~~h~~lr~l~-~~~~~~~v~~~~~-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~ 200 (475)
+....|+....|+ +-.+++.|++.++ ..+++|+..+... +....| +...|+.+++ +.-
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rG----------------hs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRG----------------HSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCC----------------Cccccchhccchhhh
Confidence 3344565544443 5667778888655 6788999655432 223333 2246888888 566
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEE
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN 280 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~ 280 (475)
++++++.|..|++|.+...... .++.+|.+.|++|+| +|-. +.+.||++++||.+ .... ...+.|..
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pv---svLrghtgavtaiaf--sP~~-----sss~dgt~~~wd~r-~~~~--~y~prp~~ 312 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPV---SVLRGHTGAVTAIAF--SPRA-----SSSDDGTCRIWDAR-LEPR--IYVPRPLK 312 (1113)
T ss_pred hhhhcccCceEEEEecCCCchH---HHHhccccceeeecc--Cccc-----cCCCCCceEecccc-cccc--ccCCCCCC
Confidence 7888999999999999887665 678899999999999 7753 66799999999986 1111 11222222
Q ss_pred eccCCceE--EEEEEeec-ccceEEEE--eeeeeeEEECCCC-----------cEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 281 VSSSYCII--LLCRLLNF-MTEKVIIC--LLCLQHSSQSPDG-----------KLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 281 ~s~~~~~l--~~~~v~d~-~~~~~~~~--~~~i~~~~~sp~g-----------~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
|....... .....|+. .++..-.. .-.+.+++|...+ ...+++-.+-.+.+|++.+|...+.+.
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ 392 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM 392 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc
Confidence 21110000 00011111 11100000 0001112222222 233444456678899999999999999
Q ss_pred cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 345 ~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+|.+.++.+.+|| +.+...+++.||...|||+-. +.+++......+.+..-+||++|..++....-|.+.|.....+.
T Consensus 393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999999999 777888999999999999977 55555444335567788999999999988888899998865543
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=9.6e-10 Score=107.04 Aligned_cols=243 Identities=15% Similarity=0.151 Sum_probs=150.1
Q ss_pred EEEEcCcEEEEEec----CceEEEEeCCCC-CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-C
Q 011924 194 TLAVKDKLLVAGGF----QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 267 (475)
Q Consensus 194 ~l~~~~~~lvsg~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~ 267 (475)
+++.++++|++... .|.|..|.+... +.................+++ +|+++.++++...+|+|.++++.. +
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCc
Confidence 34448888888766 579999998876 332222222223334567888 999998666666799999999976 4
Q ss_pred eeeee---eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCc--eE-
Q 011924 268 QLSKH---FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK--TI- 340 (475)
Q Consensus 268 ~~~~~---~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~--~~- 340 (475)
.+... +.+... . +. ... +......++.++|+|+++++.. ....|.+|++.... ..
T Consensus 121 ~l~~~~~~~~~~g~-g--~~-----------~~r----q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 121 SLGEVVQTVRHEGS-G--PN-----------PDR----QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EEEEEEEEEESEEE-E--SS-----------TTT----TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred ccceeeeecccCCC-C--Cc-----------ccc----cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 44332 211100 0 00 000 0000111789999999988874 23468999987554 32
Q ss_pred -EEee-cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-Cc--eEEEEecC------CCceEEEEEccCCCEEEEE
Q 011924 341 -ASLC-GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-SE--SVAVLKGN------LGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 341 -~~l~-~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~~--~~~~~~~~------~~~v~~l~~spdg~~la~~ 408 (475)
..+. ......+.++|+|++++++..+. +++|.++++... +. .+..+... ......++++|||++|+++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 2232 23456889999999998877765 788999998721 22 22222211 1257789999999998876
Q ss_pred c-CCCeEEEEECC--CCee--EEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 409 E-PADFVHVYDVK--SGYE--KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 409 ~-~dg~i~iwd~~--~~~~--~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
. ..+.|.+|++. ++.. +..+.......+.++++|+|++|+++..+...
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 5 46789999993 3332 22222223458999999999999999766544
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.5e-11 Score=120.99 Aligned_cols=210 Identities=18% Similarity=0.137 Sum_probs=133.5
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.|.++|.+..... ........+....| +|+|+.++.+...++ .|.+||+.+++.......+....
T Consensus 199 ~l~i~d~dG~~~~----~l~~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~------- 265 (448)
T PRK04792 199 QLMIADYDGYNEQ----MLLRSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING------- 265 (448)
T ss_pred EEEEEeCCCCCce----EeecCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-------
Confidence 5666666543322 22334556778888 999998555554443 58888998776533322333333
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
..+|+|+|+.|+.. +.++ .|+++|+.+++. ..+..+.......+|+|+|+.|+.
T Consensus 266 ----------------------~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f 322 (448)
T PRK04792 266 ----------------------APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIF 322 (448)
T ss_pred ----------------------CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEE
Confidence 67899999988764 4455 488889887764 455556556678899999998877
Q ss_pred EeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 365 GNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 365 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.+. ++ .|.++|+.. ++ ...+..........+|+|||++|+..+.. + .|.++|+.++... .+... ......
T Consensus 323 ~s~~~g~~~Iy~~dl~~-g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p 398 (448)
T PRK04792 323 TSERGGKPQIYRVNLAS-GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP 398 (448)
T ss_pred EECCCCCceEEEEECCC-CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc
Confidence 654 33 466667754 33 33332222233467899999998876553 3 4666788877543 22222 223356
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
.|+|||+.|+..+.++....+
T Consensus 399 s~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred eECCCCCEEEEEEecCCceEE
Confidence 899999999887766543333
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=9.1e-13 Score=125.76 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=130.8
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
..+.+|.+-|++++| +.+|.. |++||.|-.+.|||.-..+++..+. |...|-
T Consensus 44 ~eL~GH~GCVN~LeW--n~dG~l-L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF----------------------- 97 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW--NADGEL-LASGSDDTRLIVWDPFEYKLLHSISTGHTANIF----------------------- 97 (758)
T ss_pred hhhccccceecceee--cCCCCE-EeecCCcceEEeecchhcceeeeeeccccccee-----------------------
Confidence 456789999999999 999986 9999999999999998877777665 666666
Q ss_pred EeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCC----------ceEEEeecCCCCeEEEEEecCC-CEEEEEeCCCe
Q 011924 304 CLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTG----------KTIASLCGHLDFSFASAWHPNG-VTFATGNQDKT 370 (475)
Q Consensus 304 ~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~----------~~~~~l~~h~~~v~~~~~sp~g-~~l~t~s~dg~ 370 (475)
++.|-| +.+++++|..|..|+++|+... ...+.+..|...|..++-.|++ +.+.+++.||+
T Consensus 98 ------svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 98 ------SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred ------EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999998 6678889999999999999742 2344556799999999999977 89999999999
Q ss_pred EEEEECCCCCceEEEEe---------cCCCceEEEEEccCC-CEEEEEcCCCeEEEEEC
Q 011924 371 CRIWDLRNLSESVAVLK---------GNLGAIRSIRYTSDG-RYMATAEPADFVHVYDV 419 (475)
Q Consensus 371 v~iwd~~~~~~~~~~~~---------~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~ 419 (475)
++-+|+|.+..+..... ...-...++..+|.. .+||+|+.+-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99999997433322221 112345688899955 58999999999999994
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=1.6e-11 Score=109.02 Aligned_cols=215 Identities=14% Similarity=0.085 Sum_probs=146.6
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSY 285 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~ 285 (475)
..|.+.++++...+......+.....+.+..+.|..-+ +|...++-+-..|.|.++.........+++.-.....+..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~- 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV- 122 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe-
Confidence 35778888876655332112222233445555553223 4444466666778888887654444444432211110000
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEEec-CCCEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHP-NGVTF 362 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~h~~~v~~~~~sp-~g~~l 362 (475)
. .-++.|++.+..++++-.+|.+.+.+...+.. ++.++.|.-.++.+.|+. +.+++
T Consensus 123 --------------------~-~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 123 --------------------E-ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred --------------------e-eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceE
Confidence 0 01788999999999999999999776554443 447889999999999987 66899
Q ss_pred EEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
.+|+.|+.+.-||+|.+++.+.. .+-|...|.++.-+| .+.+|++|+.|..|++||.++..++.......|.|+.+.+
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 99999999999999965554444 556788899998887 5789999999999999999864433333345588999999
Q ss_pred cCC
Q 011924 441 SPD 443 (475)
Q Consensus 441 spd 443 (475)
+|.
T Consensus 262 ~p~ 264 (339)
T KOG0280|consen 262 HPE 264 (339)
T ss_pred cch
Confidence 994
No 237
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=119.59 Aligned_cols=196 Identities=12% Similarity=0.111 Sum_probs=148.1
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC------Ceeeeeee--ccccEEeccCCceEEEEE
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------YQLSKHFR--FPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~------~~~~~~~~--~~~~v~~s~~~~~l~~~~ 292 (475)
..+|.+-..+|.+-|++|.| +.++++ |++|+.|..+++|.+.. .+++.... |...|-
T Consensus 45 R~~~qKD~~~H~GCiNAlqF--S~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF------------ 109 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQF--SHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF------------ 109 (609)
T ss_pred cchhhhhhhhhccccceeee--ccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceE------------
Confidence 34556667789999999999 889886 99999999999999853 23333332 223444
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEEecCCCEEEEEeCCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~---~~v~~~~~sp~g~~l~t~s~dg 369 (475)
|++|+...+.|.+|+.+++|.+-|+.+.+.+..+. |. +.|+.+..+|..+.|++.+.++
T Consensus 110 -----------------~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 110 -----------------SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAK 171 (609)
T ss_pred -----------------EEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCc
Confidence 99999999999999999999999999988877665 44 4899999999999999999999
Q ss_pred eEEEEECCCCCceEE--EEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCee-EEEEec---cCC---CeEEEE
Q 011924 370 TCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYE-KEQEID---FFG---EISGIS 439 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~-~~~~~~---~~~---~i~~l~ 439 (475)
.|.+||.|....+.. .+.........+.|+|.. ++|++++..+-+.+||++.... +.+... ... +-.+..
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 999999987432322 223344567889999965 6888898888999999875432 222221 112 235788
Q ss_pred EcCCCCeEEE
Q 011924 440 FSPDTESLFI 449 (475)
Q Consensus 440 fspdg~~l~~ 449 (475)
|+|+|..|++
T Consensus 252 ~~~~G~Q~ms 261 (609)
T KOG4227|consen 252 WSPSGNQFMS 261 (609)
T ss_pred eCCCCCeehh
Confidence 9999987764
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6.7e-10 Score=102.07 Aligned_cols=248 Identities=17% Similarity=0.161 Sum_probs=159.4
Q ss_pred EEEEE--cCcEEEEEec---CceEEEEeCCCC-C-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 193 STLAV--KDKLLVAGGF---QGELICKHLDRP-G-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~---dg~i~vw~~~~~-~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+-|++ +++.|.++.. .|.|..+.++.. + ..+.... .....+.+.+++ +++|+.++++...-|.|.++-++
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcc
Confidence 34444 7778888754 488888888764 2 2221122 122233478888 99999866666778999999986
Q ss_pred C-Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCce
Q 011924 266 K-YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKT 339 (475)
Q Consensus 266 ~-~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~ 339 (475)
. |.+. ..+.|..+-- ...+....+.+..+.|++++|++.. .| .|.+|++..|++
T Consensus 120 ~dG~l~~~v~~~~h~g~~p-------------------~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L 179 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGP-------------------HERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKL 179 (346)
T ss_pred cCCccccceeeeecCCCCC-------------------CccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcc
Confidence 5 4332 2333333300 0000000111778999999999874 44 599999997765
Q ss_pred EEEee---cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecC---------CCceEEEEEccCCCEEE
Q 011924 340 IASLC---GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGN---------LGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 340 ~~~l~---~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~la 406 (475)
...-. ......+-+.|||++++.+..+. +++|.+|........+..++.+ ......+..+|||++|.
T Consensus 180 ~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 180 TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 32211 23456788999999999988876 8999999997643434444321 23566899999999998
Q ss_pred EEcC-CCeEEEEECCC--CeeE-EEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEee
Q 011924 407 TAEP-ADFVHVYDVKS--GYEK-EQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465 (475)
Q Consensus 407 ~~~~-dg~i~iwd~~~--~~~~-~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~ 465 (475)
++.. .+.|.+|.+.. +... .... .+....+.+.|+|.|++|+++..|+.. +.-|.+.
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~--i~vf~~d 321 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN--ITVFERD 321 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc--EEEEEEc
Confidence 8754 34788887753 3221 1112 233348899999999999999887654 4444443
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.2e-11 Score=118.10 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=138.5
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+...+| +|+.|+..+.. ..|.+|++...... .+ ....+.+....| +|+|+.++++.+.++ .|.+||
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l-~~~~g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QI-TNFEGLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEccCCCceEEEEE
Confidence 4566666 88888776543 46888998765433 22 222334456777 999998666666665 578889
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++............ ...|+|+|+.++..+. + ..|+++++.+++..
T Consensus 274 ~~~~~~~~lt~~~~~~~-----------------------------~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 274 LASRQLSRVTNHPAIDT-----------------------------EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCCCeEEcccCCCCcC-----------------------------CeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 98876544333333333 6789999998887664 2 36888888777643
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD-K--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i 414 (475)
.+..........+|+|+|+.|+..+.. + .|.+||+.. +. ...+... .......|+|||++|+.++.+ ..|
T Consensus 325 -~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 325 -RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence 333222334467899999999887653 3 588899865 33 3333322 223367899999998877654 357
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.++++. |.....+..+.+.+...+|||-
T Consensus 401 ~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 778875 4444445455677888889874
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6e-11 Score=119.35 Aligned_cols=213 Identities=19% Similarity=0.200 Sum_probs=135.9
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe--EEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~--v~iwd 263 (475)
.+.+..| +|+.|+..+.. ..|++|++...... .+. ...+......| +|+|+.++++.+.++. |.++|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt-~~~g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVT-SFPGINGAPRF--SPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Eec-CCCCCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEE
Confidence 4555555 88888776543 36888888765432 111 11223345677 9999986777777775 77778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++......+..... ..+|+|+|+.++..+. + ..|+++|+.+++..
T Consensus 293 l~tg~~~~lt~~~~~~~-----------------------------~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 293 IATKALTRITRHRAIDT-----------------------------EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCCCCeEECccCCCCcc-----------------------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 87776544333333334 6789999998887654 2 35777788777643
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i 414 (475)
.+..........+|+|+|++|+..+. ++ .|.++|+.. +. ...+.... ......|+|+|++|+..+.+ + .+
T Consensus 344 -~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 344 -RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred -EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CCCCceECCCCCEEEEEEecCCceEE
Confidence 33322333455799999999887765 34 455567755 33 33333221 22356899999988876654 2 47
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+++. +|.....+..+.+.+...+|||-
T Consensus 420 ~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 420 AAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 78886 45556666666678888999883
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-11 Score=111.11 Aligned_cols=259 Identities=14% Similarity=0.172 Sum_probs=160.1
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-eEE-EeeecCCC------------CceeEEEEEeCCCCCeEEEEEe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-SFC-SRTTYDDN------------AITNAVEIYGSPSGAVHFTASN 254 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-~~~-~~~~~~~~------------~~v~~l~~~~s~~g~~~l~s~s 254 (475)
-|+++.| .|.+|++|..+|.|.++.-..... .+. ...+..|. ..|+.+.|..-.+.. .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEEec
Confidence 4778888 899999999999999987654332 111 12223333 348889995333444 466667
Q ss_pred CCCeEEEEECCCCeeee-eeeccccEEeccCCceEEEEEEeecccceE--------E---EEeeeeeeEEECCCCcEEEE
Q 011924 255 NDCGVRDFDMGKYQLSK-HFRFPWPVNVSSSYCIILLCRLLNFMTEKV--------I---ICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 255 ~dg~v~iwd~~~~~~~~-~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~--------~---~~~~~i~~~~~sp~g~~l~~ 322 (475)
+|.+|++|.+....... .+..+... +. ..+..+++--...... + .+.-.|.+++++.|+..+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~---~~-~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEG---PP-GTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccC---CC-CccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 99999999885432221 11100000 00 0000111110000000 0 01114668999999999987
Q ss_pred EeCCCcEEEEECCCC-c--eEEEeecC-----CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce-----EEE---
Q 011924 323 VGDNPDGLLVDSMTG-K--TIASLCGH-----LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES-----VAV--- 385 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~-~--~~~~l~~h-----~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~-----~~~--- 385 (475)
+ +|-.|.+|.+.-. + .+.-++.+ ..-|++..||| ..+.|+.++..|+|++-|+|...-+ +..
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 7 6678999998722 2 12223333 24578899999 6788999999999999999852111 111
Q ss_pred -------EecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC-CCCeeEEEEeccC------------CC---eEEEEEcC
Q 011924 386 -------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KSGYEKEQEIDFF------------GE---ISGISFSP 442 (475)
Q Consensus 386 -------~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---i~~l~fsp 442 (475)
+.+--..|..+.|+++|+++++-.. -+|++||+ ....++..+.-|. .. -..++||-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1111246888999999999998764 47999998 4455666665543 11 24578999
Q ss_pred CCCeEEEEEecCCc
Q 011924 443 DTESLFIGVWDRTY 456 (475)
Q Consensus 443 dg~~l~~~~~D~~~ 456 (475)
++.++++|+....+
T Consensus 340 ~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVF 353 (433)
T ss_pred CcceEecccccceE
Confidence 99999999876544
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.9e-11 Score=115.49 Aligned_cols=261 Identities=14% Similarity=0.149 Sum_probs=167.7
Q ss_pred EEEEEE--cCcEEE-EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+.|.. +|++++ +|...-.|+||++.+....+. .+..+.+..+.+. +.+-.. ++.-.+|.+|.+...-...
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE----RhlDae~V~feiL-sDD~SK-~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE----RHLDAEVVDFEIL-SDDYSK-SVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeee----ecccccceeEEEe-ccchhh-heEeecCceeeehhhcCee
Confidence 344555 888755 677889999999986554432 2222222222221 333333 2222356666554322111
Q ss_pred eeeeee-ccccEEeccCCceEE------EEEEeecccceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIIL------LCRLLNFMTEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
....++ +...+..+...+.|. .+.-.++..|.-+..+ .++.++.+++...+|++|+.+|.+..||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 111111 223333332222221 2333455555443322 25569999999999999999999999999987
Q ss_pred ceEEEeec------CCC-----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC--CCE
Q 011924 338 KTIASLCG------HLD-----FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--GRY 404 (475)
Q Consensus 338 ~~~~~l~~------h~~-----~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd--g~~ 404 (475)
..+.++.. |.+ .|+++.|+.+|-.+++|...|.|.|||+|.....+..-.+..-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 76666542 333 38999999999999999999999999999844444444455568999999775 345
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
|++.. ...++|||-.+|+....+.. ...+..+++-|++-.+++|-.++.+....
T Consensus 288 v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 288 VVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred EEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 55543 45799999999987766554 44599999999999999998887665443
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=1e-11 Score=111.82 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=136.5
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
||+|++ +++++ +-.+-|-|.++.+....|..-..|. .+.|..+..++++
T Consensus 17 Sp~g~y-iAs~~-~yrlviRd~~tlq~~qlf~cldki~-----------------------------yieW~ads~~ilC 65 (447)
T KOG4497|consen 17 SPCGNY-IASLS-RYRLVIRDSETLQLHQLFLCLDKIV-----------------------------YIEWKADSCHILC 65 (447)
T ss_pred CCCCCe-eeeee-eeEEEEeccchhhHHHHHHHHHHhh-----------------------------heeeeccceeeee
Confidence 999997 88874 4478888888887776666555566 7888887777665
Q ss_pred E-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc
Q 011924 323 V-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT-FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 323 ~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~-l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 400 (475)
+ ..++.|.+|++....-...+...+.++.+++|||+|+. |.+...+-.|.||.+.+ .+ ...++-....+..++|+|
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~-~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QK-GYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ce-eEEecccccCceeEEECC
Confidence 4 67889999999988888888888889999999999955 45666788999999965 33 333333344568899999
Q ss_pred CCCEEEEEcCC------------------------------------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 401 DGRYMATAEPA------------------------------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 401 dg~~la~~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
||++.+.++.- +.+.|||---...+..+. -.-.+..++|+|.+
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCN 222 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEecccc
Confidence 99998877632 235555532222222111 12368889999999
Q ss_pred CeEEEEEecCCcceEEEEE
Q 011924 445 ESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~ 463 (475)
++|++|+.|+.++.|-++.
T Consensus 223 qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ceEEeeccchhhhhhceee
Confidence 9999999998887665544
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=124.47 Aligned_cols=194 Identities=12% Similarity=0.027 Sum_probs=153.6
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 245 ~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
..+. ++.++.+..+.+||...+.......+....... +..-+.++++.-++++|+
T Consensus 98 e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~------------------------~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 98 ENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY------------------------SSLIIGDSAEELYIASGS 152 (967)
T ss_pred hcce-EEEEEcCceEEEEecccCceehhcCCCceEEEE------------------------eEEEEeccCcEEEEEecc
Confidence 4443 677778889999999887777666654433311 000334677888899999
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
.-+.|.+|+....+....+.||.+.++++.|+-+|+++++.|.|.++|+|++.+........-+|...|+.+.|.|+ .
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence 99999999987444444789999999999999999999999999999999998754444467789999999999999 8
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccC-CCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+++++.|.+.++|+. .+..+..+..|. ..|..++..++...+++++.|+.++..-...++.
T Consensus 231 i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred eEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 999999999999974 456666777776 4699999999999999999999987555444443
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=1.9e-09 Score=105.10 Aligned_cols=194 Identities=16% Similarity=0.132 Sum_probs=132.4
Q ss_pred cEE-EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc
Q 011924 200 KLL-VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP 278 (475)
Q Consensus 200 ~~l-vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (475)
+++ ++-..+|.|.+.|..+.+... .+......-..+.+ +|+|++ +++++.||.|.++|+.+.+.+..+.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~--s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVA---RIPTGGAPHAGLKF--SPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEE---EEE-STTEEEEEE---TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEE---EEcCCCCceeEEEe--cCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 344 556678999999988766553 22222222233455 999997 55567899999999999999999987666
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecC-------CCCe
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGH-------LDFS 350 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h-------~~~v 350 (475)
.. ++++|++|++++++. ..+.+.++|.++.+++..+... ...+
T Consensus 80 ~~-----------------------------~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 80 PR-----------------------------GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp EE-----------------------------EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred cc-----------------------------eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 77 899999999998875 6889999999999999887642 3467
Q ss_pred EEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEE
Q 011924 351 FASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~ 428 (475)
.++..+|....++..-. .+.|-+-|......................|+|+|++++++ ...+.|-++|.++++.+..+
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 78888888886666655 47888889876433333333334467789999999987664 55679999999998776654
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.3e-12 Score=121.59 Aligned_cols=251 Identities=16% Similarity=0.236 Sum_probs=180.3
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
+.|.++.| .|..|++|+.|-+|.+|++...... .....+|...|---.|....+... +++++.||.|++=.+..
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDGQVRVSEILET 219 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcC-ceeccccCceeeeeeccc
Confidence 46888888 8999999999999999999877665 355667777776666754444444 88999999999987643
Q ss_pred Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
+.+. +..+|.+++. -++.-| +...|.+++.|+.+.-+|++++.+...
T Consensus 220 ~~~e~t~rl~~h~g~vh-----------------------------klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVH-----------------------------KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred cceecceecccccCccc-----------------------------eeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 3332 2334788888 888888 556788999999999999998876544
Q ss_pred ee---cCCC---CeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce-----EEEEec------CCCceEEEEEccCCCE
Q 011924 343 LC---GHLD---FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES-----VAVLKG------NLGAIRSIRYTSDGRY 404 (475)
Q Consensus 343 l~---~h~~---~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~-----~~~~~~------~~~~v~~l~~spdg~~ 404 (475)
+. .+.. ..++++.+| +.+++++|+.|..+++||.+...+. +..+.. ..-.|++++|+.+|.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 43 2333 578899999 6669999999999999999753321 222222 2347999999988888
Q ss_pred EEEEcCCCeEEEEECCC--C-----------eeEEEEeccCC--CeEEEE-EcCCCCeEEEE-------EecCCcceEEE
Q 011924 405 MATAEPADFVHVYDVKS--G-----------YEKEQEIDFFG--EISGIS-FSPDTESLFIG-------VWDRTYGSLLE 461 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~--~-----------~~~~~~~~~~~--~i~~l~-fspdg~~l~~~-------~~D~~~~~ll~ 461 (475)
|.++..|-.|++|.-.- | ...+.+++|.. .|.++- |-|..+|+++| -||...+.+++
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 88888888899995322 2 12233667763 466665 47888999988 46666667766
Q ss_pred EEeecceeeecc
Q 011924 462 YGRCRNYSYLDS 473 (475)
Q Consensus 462 ~~~~~~~~~l~~ 473 (475)
+..+... .++|
T Consensus 431 ~MegDr~-VVNC 441 (559)
T KOG1334|consen 431 FMEGDRH-VVNC 441 (559)
T ss_pred Hhhcccc-eEec
Confidence 6655443 4444
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=8.7e-11 Score=113.78 Aligned_cols=191 Identities=16% Similarity=0.089 Sum_probs=148.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceE---EEEeeeeeeEEECCCCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV---IICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~---~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
+++....||.+|+|+..++++...|....... +. ++...|.+..+.. ..+... ...-+.+-..++-|..
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s----~t--~~~~~w~L~~~~s~~k~~~~~~--~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLS----GT--CTYTKWGLSADYSPMKWLSLEK--AKKASLDTSMLVLGTP 78 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhcc----Cc--ceeEEEEEEeccchHHHHhHHH--HhhccCCceEEEeecC
Confidence 48888999999999999998877776332222 10 1123333211110 000000 1112334456777888
Q ss_pred CCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 326 NPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
.|.|.+|+...|+....+. +|.+.|.++.|+.+-..|.+++.|+.+..|+... ...++.+.+....+.+++.+|||+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCC
Confidence 9999999999999888887 5899999999999999999999999999999966 788888888888999999999999
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-----CCeEEEE
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-----TESLFIG 450 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-----g~~l~~~ 450 (475)
.|++|+. .|++||+++++.+..+.+|.++|++++|--+ |.+++++
T Consensus 158 ~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 158 ILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred EEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 9999874 7999999999999999999999999999887 6776654
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.3e-11 Score=114.58 Aligned_cols=235 Identities=13% Similarity=0.177 Sum_probs=154.6
Q ss_pred CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCC---ceEEEE---EEeecc--cce
Q 011924 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSY---CIILLC---RLLNFM--TEK 300 (475)
Q Consensus 230 ~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~---~~l~~~---~v~d~~--~~~ 300 (475)
.+....+.|.+ +|+|++++++|..--.|++||+..-.+..... ....|.|-+-. ..++.+ +-.+++ .|.
T Consensus 49 e~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 45566778888 99999999999999999999997654433222 12233322111 000000 000111 111
Q ss_pred EEEEee--eeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 301 VIICLL--CLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 301 ~~~~~~--~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
....-. .-..++++. ...++ +++....|+-+++..|+.+..+....+.+++|..+|...+|++|+.+|.|..||.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111100 112455553 44444 44455678999999999999998888999999999988999999999999999998
Q ss_pred CCCceEEEEec------CCC-----ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC--CCeEEEEEcCCC
Q 011924 378 NLSESVAVLKG------NLG-----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDT 444 (475)
Q Consensus 378 ~~~~~~~~~~~------~~~-----~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~fspdg 444 (475)
. .+.+..+.. +.+ .|+++.|+.+|-.+++|...|.|.|||+++..++. +..|. -+|..+.|-+.+
T Consensus 206 ~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 206 D-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred h-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccC
Confidence 7 444444432 222 49999999999999999999999999999876653 34555 478899998764
Q ss_pred CeEEEEEecCCcceEEEEEeeccee
Q 011924 445 ESLFIGVWDRTYGSLLEYGRCRNYS 469 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~~~~~~~ 469 (475)
..=.+.+.|..+-.++.-..+..+.
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred CCceEEecchHHhhhcccccCCcee
Confidence 4434444555555555444444433
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=7.9e-09 Score=100.65 Aligned_cols=261 Identities=18% Similarity=0.201 Sum_probs=161.2
Q ss_pred cceeEEecCCCeEEEecC-----CeEEEEecCCC--CceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE
Q 011924 133 LRNLVWATSKHDVYLMSH-----FSVIHWSSLTS--SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV 203 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~-----~~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv 203 (475)
...+.+.++...||.... +.|..|..... +...+-... . .+..-..+++ ++++|+
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---------------~-~g~~p~~i~~~~~g~~l~ 102 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---------------S-GGSSPCHIAVDPDGRFLY 102 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------------E-SSSCEEEEEECTTSSEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------------c-CCCCcEEEEEecCCCEEE
Confidence 345667777788888643 46776665443 332221111 0 1112234555 888888
Q ss_pred EEe-cCceEEEEeCCCCCceEEE-eeec----------CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--e
Q 011924 204 AGG-FQGELICKHLDRPGVSFCS-RTTY----------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--L 269 (475)
Q Consensus 204 sg~-~dg~i~vw~~~~~~~~~~~-~~~~----------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~ 269 (475)
++. .+|.|.++++...+..... .... .......++.+ +|+|++++++.-....|++|++.... +
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 876 4899999999876533222 1111 12344567777 99999877766556689999997644 3
Q ss_pred ee--ee--eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECC--CCce--E
Q 011924 270 SK--HF--RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSM--TGKT--I 340 (475)
Q Consensus 270 ~~--~~--~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~~--~ 340 (475)
.. .+ ......+ +++|+|+++++.+.. .++.|.++++. +++. +
T Consensus 181 ~~~~~~~~~~G~GPR-----------------------------h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPR-----------------------------HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EEEEEEECSTTSSEE-----------------------------EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEeeccccccCCCCc-----------------------------EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 22 22 2333445 899999999887765 56789999887 4432 2
Q ss_pred EEeec----C--CCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-Cc--eEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 341 ASLCG----H--LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-SE--SVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 341 ~~l~~----h--~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
..+.. . ......++++|+|++|++++. ..+|.+|++... +. .+..+.......+.++++|+|++|+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 22221 1 125788999999999988875 668999999432 22 33334433445789999999999998874
Q ss_pred -CCeEEEEEC--CCCeeEEEEe-ccCCCeEEEEE
Q 011924 411 -ADFVHVYDV--KSGYEKEQEI-DFFGEISGISF 440 (475)
Q Consensus 411 -dg~i~iwd~--~~~~~~~~~~-~~~~~i~~l~f 440 (475)
++.|.+|++ ++|.....-. ..-....||.|
T Consensus 312 ~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 312 DSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 578999866 5776544432 23356777766
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=9.6e-11 Score=104.20 Aligned_cols=235 Identities=16% Similarity=0.098 Sum_probs=152.0
Q ss_pred eEEEEEE-----cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCcee-EEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 191 QVSTLAV-----KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITN-AVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 191 ~v~~l~~-----~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+..|-| ++. .|+-+-..|.|.++............-.....-.+. ++.+.+++.+.. ++++-.+|.+.+-+
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVY 149 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEe
Confidence 4455555 444 556667789999987654333211111222222222 455555888887 66666778887555
Q ss_pred CCCCeeee--eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-CCc
Q 011924 264 MGKYQLSK--HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGK 338 (475)
Q Consensus 264 ~~~~~~~~--~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~~ 338 (475)
.....+.. ..+ |..+.- -.+|+- +.+++.+|++|+.+..||+| .++
T Consensus 150 ~t~~~le~vq~wk~He~E~W-----------------------------ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAW-----------------------------TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred cceeeeeecccccccceeee-----------------------------eeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 44333322 222 333333 445654 55789999999999999999 344
Q ss_pred eEEE-eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC--CCEEEEEcCCCeE
Q 011924 339 TIAS-LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--GRYMATAEPADFV 414 (475)
Q Consensus 339 ~~~~-l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd--g~~la~~~~dg~i 414 (475)
.+.. .+-|...|.++.-+| .+.+++||+.|-.|++||.|+.++++..-.. .+.|+.+.++|. ++.|+++-.+| .
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ 278 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-A 278 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-c
Confidence 4433 456888999998887 7899999999999999999988888876554 478999999994 45566666666 7
Q ss_pred EEEECCCCee-----EEEEeccCCCeEEEEEcCCCCeEEEE-EecCCcc
Q 011924 415 HVYDVKSGYE-----KEQEIDFFGEISGISFSPDTESLFIG-VWDRTYG 457 (475)
Q Consensus 415 ~iwd~~~~~~-----~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~~~ 457 (475)
+|-++..+.. ......|.+-..+-.|......|+++ ..|+.+.
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR 327 (339)
T ss_pred eEEEecccccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence 7777765432 22333466666666774444556664 4565533
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.8e-10 Score=111.68 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=152.4
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC----C-------------CCCeEEEEEeCCCeEEE
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS----P-------------SGAVHFTASNNDCGVRD 261 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s----~-------------~g~~~l~s~s~dg~v~i 261 (475)
..+++....+|.+++|+...+.......-.....+...+..|..+ | .+..+++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 457888899999999999877654333333333344444444322 2 23446888889999999
Q ss_pred EECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc
Q 011924 262 FDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 262 wd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
|++..++....+. |.++|+ ++.++.+-..|.+++.|+.+..|+...++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~-----------------------------~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVN-----------------------------EILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEecCCeEEEEEecCCCCCcce-----------------------------eeecccccCceEecCCceeEEEEecccce
Confidence 9999999988776 788999 99999999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC-----CCEEEE-EcCCC
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-----GRYMAT-AEPAD 412 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~la~-~~~dg 412 (475)
.++.+.+.+..+.+++.+|||..+++++ ++|++||+.+ .+.+..+.+|.++|+++.|.-+ |.++.+ +....
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 9999998889999999999999999997 5799999977 8999999999999999999876 665544 44455
Q ss_pred eEEEEECC
Q 011924 413 FVHVYDVK 420 (475)
Q Consensus 413 ~i~iwd~~ 420 (475)
.+.+|-+.
T Consensus 213 ~i~~w~v~ 220 (541)
T KOG4547|consen 213 GITVWVVE 220 (541)
T ss_pred ceeEEEEE
Confidence 57777554
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=115.94 Aligned_cols=289 Identities=14% Similarity=0.175 Sum_probs=198.0
Q ss_pred eeecccceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEE
Q 011924 128 ILHFQLRNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVA 204 (475)
Q Consensus 128 ~~h~~lr~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvs 204 (475)
..|....|-|......++.. ..+..+++|+..+++.+.-+. +||-.- ..+---|-+ +...|++
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~N-------------vfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNN-------------VFQAKFIPFSGDRTIVT 204 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccc-------------hhhhhccCCCCCcCcee
Confidence 34555555554444444444 234789999998775433221 222100 001111222 6678999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---cccc--E
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWP--V 279 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~--v 279 (475)
.+.||++++=.+...+...-.+....|.+.|.-++. -|....-|.+++.|+.+.-+|++.......+. ...+ |
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999999887766655445667789999999999 88887789999999999999998765433332 1111 2
Q ss_pred EeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCc------eEEEeec------C
Q 011924 280 NVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK------TIASLCG------H 346 (475)
Q Consensus 280 ~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~------~~~~l~~------h 346 (475)
. .+.++..| +...+++++.+..+++||.+.-. .+..+.. .
T Consensus 283 ~---------------------------L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 283 G---------------------------LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred e---------------------------eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 2 12888999 44589999999999999987321 1222222 2
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-C----------ceEEE-EecCCC--ceEEEEE-ccCCCEEEEEcCC
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-S----------ESVAV-LKGNLG--AIRSIRY-TSDGRYMATAEPA 411 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~----------~~~~~-~~~~~~--~v~~l~~-spdg~~la~~~~d 411 (475)
...|++++++.++.-|+++-.|-.|.++.-... + ..+.. +++|.. .|..+-| -|...|+++|+.-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 346899999987777777777888999943211 1 12222 677754 4556654 7888999999999
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
|.|.||+-++++.+....+-..-|.||.=+|--..||+++-|..++.+
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 999999988887776666655689999999999999999999887644
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=1e-09 Score=103.69 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=162.9
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccccccee-EEEEEE-cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ-VSTLAV-KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~-~~~~lvsg~~dg~ 210 (475)
.||+ .+++..|.+...+.|+.+++.+.+...+ +..=++.-..+.+. ....+. .-..+. +|++++..+ .|+
T Consensus 271 ~R~~--nsDGkrIvFq~~GdIylydP~td~lekl-dI~lpl~rk~k~~k----~~~pskyledfa~~~Gd~ia~VS-RGk 342 (668)
T COG4946 271 PRNA--NSDGKRIVFQNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPK----FVNPSKYLEDFAVVNGDYIALVS-RGK 342 (668)
T ss_pred cccc--CCCCcEEEEecCCcEEEeCCCcCcceee-ecCCcccccccccc----ccCHHHhhhhhccCCCcEEEEEe-cCc
Confidence 3454 5677888888889999999988876553 22101110111110 111111 112344 788888876 566
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-eEEEEECCCCeeeeeeeccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~ 289 (475)
..+.+...+- .+.-++.+.|....+ ..+++. ++.|.+|| .+-|+|..+++..+....-+.+.
T Consensus 343 aFi~~~~~~~-----~iqv~~~~~VrY~r~--~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~--------- 405 (668)
T COG4946 343 AFIMRPWDGY-----SIQVGKKGGVRYRRI--QVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE--------- 405 (668)
T ss_pred EEEECCCCCe-----eEEcCCCCceEEEEE--ccCCcc-eEEeccCCceEEEEecCCceEEEeeCCccceE---------
Confidence 7666654322 223356666888888 555554 88888999 89999999988877777777787
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
++..+|+|+.++++.....+.++|+.+|+....=+...+-|...+|||+++++|-+--+|
T Consensus 406 --------------------av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 406 --------------------AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred --------------------EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 999999999999999999999999999987665566678899999999999999987766
Q ss_pred ----eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 370 ----TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 370 ----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.|+++|+.. ++. ...+...+.=.+.+|.|+|++|..-+
T Consensus 466 y~tq~Iklydm~~-~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 466 YYTQSIKLYDMDG-GKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeeeeEEEEecCC-CeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 699999975 443 33343444446789999999887654
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.5e-09 Score=105.18 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=126.0
Q ss_pred ceeEEEEEeCCCCCe-EEEEEeC--CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 234 ITNAVEIYGSPSGAV-HFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~-~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
......| +|+|+. ++++... ...|.++|+.+++.......++... .
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-----------------------------~ 237 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-----------------------------V 237 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-----------------------------e
Confidence 5556677 999985 3433332 3568888998887655554555555 6
Q ss_pred EEECCCCcEEEEEe---CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCCceEE
Q 011924 311 SSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVA 384 (475)
Q Consensus 311 ~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg--~v~iwd~~~~~~~~~ 384 (475)
..|+|||+.++... .+..|+++++.+++ ...+..+........|+|||+.|+..+. .+ .|.+.|+.. +...+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r 315 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQ 315 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEe
Confidence 78999998777653 23578888987776 4455544443445689999998877664 23 577778854 44322
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCC---------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPA---------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+..... ....|||+|++|+..+.. ..|.+.|+.++.. ..+... +......|||||+.|+....++.
T Consensus 316 -lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 -VVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred -CccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 222111 135899999988876643 3688889888754 333332 33446899999999988876655
Q ss_pred cceEEEEE
Q 011924 456 YGSLLEYG 463 (475)
Q Consensus 456 ~~~ll~~~ 463 (475)
...|....
T Consensus 391 ~~~L~~~~ 398 (419)
T PRK04043 391 QSALGIIR 398 (419)
T ss_pred cEEEEEEe
Confidence 54454443
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=7.6e-11 Score=120.93 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=146.5
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCc-eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAI-TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKH 272 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~ 272 (475)
+.++...++.+..+..+.+|+....... ..+....... ..++-+-.+++. ..+++|+--+.|.+|+... ...++.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCccee
Confidence 3447788899999999999998654332 1222222111 122223234444 4588899999999999863 233334
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~ 351 (475)
..|.+.+- .+.++-+|++++++++|..+++|++.+++... +.-+|+..++
T Consensus 172 ~GHeG~iF-----------------------------~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 172 KGHEGSIF-----------------------------SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred cccCCceE-----------------------------EEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence 44777777 99999999999999999999999999887665 6668999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.++|+|+ .++|++.|-++++|+.. +..+..+.+|. ..++.++..++...+++++.|+.+++|++..
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999998 89999999999999774 55566777776 4789999999989999999999999999754
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2e-09 Score=107.60 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=124.7
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC----eEEEEECCCC---eeeeeeecc-ccEE
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKY---QLSKHFRFP-WPVN 280 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~---~~~~~~~~~-~~v~ 280 (475)
..|.+.++..+... ++. ...+......| ||+|+.++++...+| .+.+|++..+ +........ ....
T Consensus 211 ~~I~~~~l~~g~~~---~lt-~~~g~~~~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~ 284 (428)
T PRK01029 211 PKIFLGSLENPAGK---KIL-ALQGNQLMPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG 284 (428)
T ss_pred ceEEEEECCCCCce---Eee-cCCCCccceEE--CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC
Confidence 46777787755433 221 12333445677 999998666654333 3444666542 222222221 1223
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCc--EEEEECCC-CceEEEeecCCCCeEEEEEe
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPD--GLLVDSMT-GKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~--i~iwd~~~-~~~~~~l~~h~~~v~~~~~s 356 (475)
..+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+...+|+
T Consensus 285 -----------------------------~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 285 -----------------------------NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred -----------------------------CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 678999999888776 3554 44555542 33455566555677889999
Q ss_pred cCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCCeeEEEEec
Q 011924 357 PNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 357 p~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~ 430 (475)
|||+.|+..+.+ ..|.+||+.. ++. ..+......+..+.|+|||++|+.... ...|.++|+.+++.. .+..
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~ 412 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVI 412 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence 999999877653 3699999965 443 344433445678999999998875443 356899999877543 3444
Q ss_pred cCCCeEEEEEcCCC
Q 011924 431 FFGEISGISFSPDT 444 (475)
Q Consensus 431 ~~~~i~~l~fspdg 444 (475)
..+.+...+|+|-.
T Consensus 413 ~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCcccCceecCCC
Confidence 56778889999864
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.1e-09 Score=101.71 Aligned_cols=241 Identities=16% Similarity=0.167 Sum_probs=149.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE-----eCC-----CeEEEEECCCC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-----NND-----CGVRDFDMGKY 267 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~-----s~d-----g~v~iwd~~~~ 267 (475)
++..+.+-+.++.+.|++........|... . .+..+.| ||-|.+ +.+- ..+ ..+.+|+++++
T Consensus 44 ~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~----~-~~~~L~f--SP~g~y-L~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 44 NNGRLFAYSDNQVVKVFEIATLKVVLCVEL----K-KTYDLLF--SPKGNY-LLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred CCCcEEEEEcCCeEEEEEccCCcEEEEecc----c-eeeeeee--cccccc-cccccccccccCCCCCCCceeeeeeccc
Confidence 444444555678899999877664433222 1 4566666 999876 4431 122 34779999885
Q ss_pred eeeeeee----ccccEEeccCCceEE-----EEEEeecccceEEEEee---eee--------------------------
Q 011924 268 QLSKHFR----FPWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLL---CLQ-------------------------- 309 (475)
Q Consensus 268 ~~~~~~~----~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~---~i~-------------------------- 309 (475)
.....+. ..|...|+.+....+ .+.+++...-+.+.... .|.
T Consensus 116 ~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 116 VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 5444443 235555665554332 34444444322222211 222
Q ss_pred --------------------------eEEECCCCcEE-EEEeC-----------CCcEEEEECCCCceEEEeecCCCCeE
Q 011924 310 --------------------------HSSQSPDGKLL-IIVGD-----------NPDGLLVDSMTGKTIASLCGHLDFSF 351 (475)
Q Consensus 310 --------------------------~~~~sp~g~~l-~~~~~-----------dg~i~iwd~~~~~~~~~l~~h~~~v~ 351 (475)
.+.|++-|.-| +.++. ..+++++++........|. -.++|.
T Consensus 196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh 274 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH 274 (566)
T ss_pred EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence 34444433322 22211 2345566655223333333 368999
Q ss_pred EEEEecCCCEEEE--EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEE
Q 011924 352 ASAWHPNGVTFAT--GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKE 426 (475)
Q Consensus 352 ~~~~sp~g~~l~t--~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~ 426 (475)
++.|+|+|+.|++ |-.-..+.|+|++ +.++..+. .++-.++-|+|.|++|+.|+-+ |.|-|||+.+.+++.
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence 9999999987765 4567789999996 56776664 4567899999999999988764 789999999866665
Q ss_pred EEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 427 QEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 427 ~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.+.. ..-+-+.|+|||++++++..-
T Consensus 351 ~~~a--~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 351 KFKA--ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred cccc--CCceEEEEcCCCcEEEEEecc
Confidence 5443 234567899999999998654
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=4.2e-08 Score=93.71 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=157.8
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEec----------CceEEEEeCCCCC
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF----------QGELICKHLDRPG 220 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~----------dg~i~vw~~~~~~ 220 (475)
+++.+.+..+.+....+.... . .... ++.+++.|+++.. +..|.+||..+.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-------~----------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-------L----------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-------C----------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 578888877766655544321 1 1122 6667777776654 7899999998877
Q ss_pred ceEEEeeecC-C---CCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeeeccccEE--eccCCceEE----
Q 011924 221 VSFCSRTTYD-D---NAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFRFPWPVN--VSSSYCIIL---- 289 (475)
Q Consensus 221 ~~~~~~~~~~-~---~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~v~--~s~~~~~l~---- 289 (475)
......+-.. + ......+++ +|+|+.++++- +.+..|.+.|+.+++.+..+.-+.+.. .++....+.
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~D 166 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRD 166 (352)
T ss_pred EEeEEccCCCchhhccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeec
Confidence 6533332111 0 111224455 99999855554 337999999999999998887443322 111111110
Q ss_pred --EEEEeecccceEEEEeeee---------eeEEECC-CCcEEEEEeCCCcEEEEECCC-----CceEEEeec-------
Q 011924 290 --LCRLLNFMTEKVIICLLCL---------QHSSQSP-DGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG------- 345 (475)
Q Consensus 290 --~~~v~d~~~~~~~~~~~~i---------~~~~~sp-~g~~l~~~~~dg~i~iwd~~~-----~~~~~~l~~------- 345 (475)
...+-....++.......+ ..-.+.+ +|+++.+... |.|.+.|+.. .+.+..+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence 1111111222222111111 1113455 8887777766 9999999643 233333221
Q ss_pred CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEc-CCCe
Q 011924 346 HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADF 413 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~-~dg~ 413 (475)
..+.+.-++++|+++.++.... .+.|.++|..+ .+.+..+... ..+..++++|||+ +|++.. .++.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCc
Confidence 2233445999999998888531 24799999977 6777776643 3788999999999 887766 5788
Q ss_pred EEEEECCCCeeEEEEe
Q 011924 414 VHVYDVKSGYEKEQEI 429 (475)
Q Consensus 414 i~iwd~~~~~~~~~~~ 429 (475)
|.++|+.+++.+..+.
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 9999999998888763
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.4e-09 Score=101.24 Aligned_cols=258 Identities=13% Similarity=0.114 Sum_probs=164.1
Q ss_pred eEEEEEEcCcEEEEEec-----------CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 191 QVSTLAVKDKLLVAGGF-----------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~-----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+...+++..++||+-+. ...++|||+.++..........+....-.-..| |.++++ ++.-.. .+|
T Consensus 253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW--S~DdKy-~Arm~~-~si 328 (698)
T KOG2314|consen 253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW--SHDDKY-FARMTG-NSI 328 (698)
T ss_pred eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe--ccCCce-eEEecc-ceE
Confidence 44455558899998652 257999999987766444443333322333466 999986 555433 679
Q ss_pred EEEECCCCeeeee--e--eccccEEeccCCceEEE-----------EEEeecccceEEEEee--eee--eEEECCCCcEE
Q 011924 260 RDFDMGKYQLSKH--F--RFPWPVNVSSSYCIILL-----------CRLLNFMTEKVIICLL--CLQ--HSSQSPDGKLL 320 (475)
Q Consensus 260 ~iwd~~~~~~~~~--~--~~~~~v~~s~~~~~l~~-----------~~v~d~~~~~~~~~~~--~i~--~~~~sp~g~~l 320 (475)
.||+.....++.. + .......++|.+.+|+. +.+....+++.+.+.. .|. .+.|-.+|.+|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 9999877554422 1 23445558888888863 4555666665554433 232 35677788888
Q ss_pred EEEeC----------CCcEEEEECCCCc-eEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECC-CCCc--eE
Q 011924 321 IIVGD----------NPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLR-NLSE--SV 383 (475)
Q Consensus 321 ~~~~~----------dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~-~~~~--~~ 383 (475)
++--. -..+-|+.++... ++..+. -...|...+|-|.|+.+++-+. ..++.+|-+. +..+ .+
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 76321 1234456555332 333333 4567899999999998887654 4579999887 3222 33
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
..+. ....+.+.|+|.|++++++. ..|.+.++|+.-......-..-.-..+.+.|.|.|+|+++++.-..
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 3333 24567899999999998764 4688999997642222222222235678999999999999876544
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=4.6e-08 Score=93.47 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=145.7
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCCeeeeeeec----
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRF---- 275 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~---- 275 (475)
|+|.+.|..+.+..- .+..+.... .+ + ||+|+.++++.+ .+..|.+||..+.+.+..+..
T Consensus 27 ~~v~ViD~~~~~v~g--~i~~G~~P~--~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLG--MTDGGFLPN--PV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEE--EEEccCCCc--ee-E--CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 889999988766542 222222222 23 5 999999788888 789999999999999887763
Q ss_pred -------cccEEeccCCceEE--------EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--------CCCcEEEE
Q 011924 276 -------PWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--------DNPDGLLV 332 (475)
Q Consensus 276 -------~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--------~dg~i~iw 332 (475)
+..+.++++|+.+. .+.+.|..+++.+..+. . |++..++..+ .||.....
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~------v-p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD------V-PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe------C-CCCcEEEEecCCccEEEeecCceEEE
Confidence 12566889998774 57899999998876443 1 4444444332 33333332
Q ss_pred ECC-CCceE-EE---eecCCCCeEE-EEEec-CCCEEEEEeCCCeEEEEECCCC----CceEEEEec-------CCCceE
Q 011924 333 DSM-TGKTI-AS---LCGHLDFSFA-SAWHP-NGVTFATGNQDKTCRIWDLRNL----SESVAVLKG-------NLGAIR 394 (475)
Q Consensus 333 d~~-~~~~~-~~---l~~h~~~v~~-~~~sp-~g~~l~t~s~dg~v~iwd~~~~----~~~~~~~~~-------~~~~v~ 394 (475)
.+. +|+.. .. +.+...++.. -.+.+ +|+++..... |+|.+-|+... ......+.. ..+.+.
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 222 22211 11 1111111111 14456 8888877777 99999996431 222222221 123444
Q ss_pred EEEEccCCCEEEEEc----------CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEe
Q 011924 395 SIRYTSDGRYMATAE----------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 395 ~l~~spdg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~ 452 (475)
-++++|+|+.|+++. ..+.|.++|+++++.+..+.. ..++.+++|||||+ +|++...
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 599999999887743 225899999999988877663 56899999999999 7776653
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=3.6e-10 Score=101.23 Aligned_cols=258 Identities=17% Similarity=0.241 Sum_probs=161.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC---ceEEEeeecCCC------------CceeEEEEEeCCCCCeEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG---VSFCSRTTYDDN------------AITNAVEIYGSPSGAVHFTA 252 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~~~~~~~~~~~~------------~~v~~l~~~~s~~g~~~l~s 252 (475)
..|+++.+ .|.+|++|...|.|.++.-.... ..+. ..+++|. ..|+.|.|+ .+.|...++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~-teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF-TEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhh-hhhcccccchhhhhhccHHHHhhheeee-cCCCcceEEE
Confidence 36889999 78899999999999999765433 1111 1122332 347888885 4555556777
Q ss_pred EeCCCeEEEEECCCCee--eeeeeccccEEeccCCceEE-------------------EEEEeecccceEEEEeeeeeeE
Q 011924 253 SNNDCGVRDFDMGKYQL--SKHFRFPWPVNVSSSYCIIL-------------------LCRLLNFMTEKVIICLLCLQHS 311 (475)
Q Consensus 253 ~s~dg~v~iwd~~~~~~--~~~~~~~~~v~~s~~~~~l~-------------------~~~v~d~~~~~~~~~~~~i~~~ 311 (475)
.++|.+|++|.+....+ +..-.....+.+...|..+. ..+++.- .+.-.|.++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN------aH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN------AHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc------cceeEeeee
Confidence 77999999999865432 21111122222111111111 1122210 111245689
Q ss_pred EECCCCcEEEEEeCCCcEEEEECCCCc---eEEEeecCC-----CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce
Q 011924 312 SQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 312 ~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~l~~h~-----~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
+++.+...++++ ++-.|.+|++.-.. .+.-++.|. .-|++..||| ..+.+..++..|+|++-|+|...-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999998888876 66779999986321 233344443 3578889999 5567777888899999999852211
Q ss_pred -----EEE----------EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEeccC------------CC
Q 011924 383 -----VAV----------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFF------------GE 434 (475)
Q Consensus 383 -----~~~----------~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~------------~~ 434 (475)
+.. +.+-...|..+.|+|+|+++++-..- +|+|||+...+ ++.++.-|. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 111 11223478889999999999887654 79999987643 455553332 12
Q ss_pred e---EEEEEcCCCCeEEEEEecCCcc
Q 011924 435 I---SGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 435 i---~~l~fspdg~~l~~~~~D~~~~ 457 (475)
| ..+.||-|.+.+++|+....+|
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfg 362 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFG 362 (460)
T ss_pred eeeeEEEEecCCccccccccccccee
Confidence 2 3578898888888887665554
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-09 Score=112.80 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=134.0
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-------eeeeee-ccccEEeccCCceEEEEEEeec
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-------LSKHFR-FPWPVNVSSSYCIILLCRLLNF 296 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~ 296 (475)
...++.|.+.++.++. ++...-+|++||.||+|++|++..-. ...++. ....+.
T Consensus 1041 VAhL~Ehs~~v~k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~---------------- 1102 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAV--SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE---------------- 1102 (1431)
T ss_pred eehhhhccccccceee--cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE----------------
Confidence 3566778888888887 66553469999999999999986411 111222 233444
Q ss_pred ccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--Cce-----EEEeecCC-CC-eEEEEEec-CC-CEEEEE
Q 011924 297 MTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKT-----IASLCGHL-DF-SFASAWHP-NG-VTFATG 365 (475)
Q Consensus 297 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~-----~~~l~~h~-~~-v~~~~~sp-~g-~~l~t~ 365 (475)
++..-+.+..+|+++.||.|++.++.. .+. ......+. +. +..-++.. .+ ..++.+
T Consensus 1103 -------------~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1103 -------------KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred -------------EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence 888889999999999999999999875 211 11111122 22 23334433 33 378888
Q ss_pred eCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcC
Q 011924 366 NQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSP 442 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fsp 442 (475)
..-+.|..||++. ....-. .....|.|++++.+|-+.+++.|+..|.+.+||++=+.++.... ++..+|..+..+|
T Consensus 1170 T~~~~iv~~D~r~-~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRM-RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred EeccceEEecchh-hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 8889999999987 332222 23345789999999999999999999999999998766655443 3446777777666
Q ss_pred C---CCeEEEEEe
Q 011924 443 D---TESLFIGVW 452 (475)
Q Consensus 443 d---g~~l~~~~~ 452 (475)
- ...+++++.
T Consensus 1249 ~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGS 1261 (1431)
T ss_pred cCCCCceEEEecc
Confidence 3 345555554
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.9e-08 Score=92.66 Aligned_cols=210 Identities=15% Similarity=0.196 Sum_probs=142.1
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC--CCeEEEEECCC--Ceeee--eee-ccccEE
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGK--YQLSK--HFR-FPWPVN 280 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~~~--~~~~~--~~~-~~~~v~ 280 (475)
+..|++|++++..............+..+.|+| +|+++.+.+.... +|.|..|.+.. |++.. ... ...+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 577999999865544333444456677888999 9999874444433 68888888764 44332 222 222335
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-CceEE--EeecCCCC-------
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIA--SLCGHLDF------- 349 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~~~~--~l~~h~~~------- 349 (475)
.++++++|++|+++. ..|.|.++-++. |.+.. .+..|.+.
T Consensus 93 -----------------------------yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 93 -----------------------------YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred -----------------------------EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 889999999998886 457899999864 44322 12225544
Q ss_pred ---eEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceE----EEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECC
Q 011924 350 ---SFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESV----AVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVK 420 (475)
Q Consensus 350 ---v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~----~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~ 420 (475)
+....+.|++++|++..- --.|.+|++.. ++.. ..++ .....+.|.|+|+|++..+. ..+++|.+|...
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEccc-CccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 788999999999998853 22599999974 4321 1222 33467899999999988765 558999999887
Q ss_pred CC-eeEEEEec-------c--CCCeEEEEEcCCCCeEEEE
Q 011924 421 SG-YEKEQEID-------F--FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 421 ~~-~~~~~~~~-------~--~~~i~~l~fspdg~~l~~~ 450 (475)
.. ..+..+.. + ......|..+|||++|.++
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 63 22222221 1 2467889999999999876
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=6.7e-10 Score=100.87 Aligned_cols=208 Identities=11% Similarity=0.114 Sum_probs=139.3
Q ss_pred eeEEEEEE----cCcEEEEEecCceEEEEeCCCCCceE--------------------------------EEe-eecCCC
Q 011924 190 TQVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSF--------------------------------CSR-TTYDDN 232 (475)
Q Consensus 190 ~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~--------------------------------~~~-~~~~~~ 232 (475)
-.|..+.| ....++..+.+.+|++|.+...+... |.+ ....|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 36777888 44566677789999999885432211 111 123466
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
-.|++|.+ +.++.. ++++ .|-.|.+|.++--.....+-...|.+. ......|++..
T Consensus 165 yhiNSIS~--NsD~Et-~lSA-DdLRINLWnlei~d~sFnIVDIKP~nm--------------------EeLteVITsaE 220 (433)
T KOG1354|consen 165 YHINSISV--NSDKET-FLSA-DDLRINLWNLEIIDQSFNIVDIKPANM--------------------EELTEVITSAE 220 (433)
T ss_pred eEeeeeee--cCccce-Eeec-cceeeeeccccccCCceeEEEccccCH--------------------HHHHHHHhhhc
Confidence 67899988 888875 6666 788999999864322111111111110 00000233778
Q ss_pred ECC-CCcEEEEEeCCCcEEEEECCCCceEE----Eee------------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 313 QSP-DGKLLIIVGDNPDGLLVDSMTGKTIA----SLC------------GHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 313 ~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~----~l~------------~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
|+| ..++++-.+..|+|++.|++...+.- .+. +--..|..+.|+++|+++++-.. -+|+|||
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 999 56778888899999999998443211 111 11235788999999999998644 5899999
Q ss_pred CCCCCceEEEEecCCC------------c---eEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 376 LRNLSESVAVLKGNLG------------A---IRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~------------~---v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+....+++.+++-|.. . -..++|+-++.++++|+..+.+++|++..|
T Consensus 300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9665788888876531 2 246789999999999999999999996554
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=124.58 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=148.2
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (475)
...+.++|+.||.+++|....+....|.++... +.|+.+.| +..|+. +..+-.||.+.+|.+.. +.....+ |.
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk-~~i~d~dg~l~l~q~~p-k~~~s~qchn 2292 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNK-FGIVDGDGDLSLWQASP-KPYTSWQCHN 2292 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCc-eeeeccCCceeecccCC-cceeccccCC
Confidence 456889999999999999998887776666443 77888888 899987 77777999999999863 2222222 44
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe---CCCcEEEEECC-CCceEEEeecCCCCeEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG---DNPDGLLVDSM-TGKTIASLCGHLDFSFA 352 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~dg~i~iwd~~-~~~~~~~l~~h~~~v~~ 352 (475)
.... ...|-. ..+++++ .++.+.+||.. .+.....-..|.+.+++
T Consensus 2293 k~~~-----------------------------Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2293 KALS-----------------------------DFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred cccc-----------------------------ceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence 4444 444433 5566654 57889999965 22222222789999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-- 430 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-- 430 (475)
+++-|...+|++|+.+|.|++||++. .+.++.++. +. ...++++|+..|.|+||++.....+..+..
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999999999999987 666666554 33 456899999999999999987654444332
Q ss_pred -cCC---CeEEEEEcCCCCeEEEEEecCC
Q 011924 431 -FFG---EISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 431 -~~~---~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+.| .+..=.+--.+.+|++++.|++
T Consensus 2411 ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2411 AKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhhcCceeeeccCceEEEecCCCC
Confidence 111 1111112223567788888763
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=6.5e-10 Score=109.63 Aligned_cols=233 Identities=14% Similarity=0.082 Sum_probs=166.7
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc------------eEEEeeecCCCCceeEEEEEeCCCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~ 253 (475)
.+.+..|++| ..+++++||.+|.++|..+.+... ....+++.+|++.|..+.| +.+.+. |.++
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~~QK-LTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NENNQK-LTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--cccccc-cccc
Confidence 4567889999 788999999999999998865321 1223567899999999999 877776 8888
Q ss_pred eCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 254 NNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
..+|.|.+|-+-.+....... ...-|. +++|+.+|..++.+..||.|.
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~-----------------------------SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVV-----------------------------SMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEE-----------------------------EEEEcCCCcEEEEEEccCCEE
Confidence 899999999997776544332 344455 999999999999999999998
Q ss_pred EEECCCCceE-EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC------ceEEEEec----CCCceEEEEE-
Q 011924 331 LVDSMTGKTI-ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS------ESVAVLKG----NLGAIRSIRY- 398 (475)
Q Consensus 331 iwd~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~------~~~~~~~~----~~~~v~~l~~- 398 (475)
+=.+...+.. ..+++ .....+.|+||.+.++.+-..|.+.+||..... .+.....+ ....|..+.|
T Consensus 141 VGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 8766532211 12332 123468899999999888889999999975311 12122211 1123444444
Q ss_pred -------ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 399 -------TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 399 -------spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
-|+...||++-.+|.+.|-.-.+...+. +....-.+.++.|+++|..|++++.|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEecccEeecceecCCCcEEEEccCccc
Confidence 3577899999999999987655443332 2333467889999999999999977643
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=3.8e-08 Score=93.26 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=150.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEee---e--cCCCCceeEEEEE--eCC-CCCeEEEEEeCCCeEEEEECCCCee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRT---T--YDDNAITNAVEIY--GSP-SGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~---~--~~~~~~v~~l~~~--~s~-~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
+|+.++.. ..|.|.++|..+......-.- . ......+....+. |++ +|.. ++..| -|.+.+.+...+-.
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~-ia~VS-RGkaFi~~~~~~~~ 353 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY-IALVS-RGKAFIMRPWDGYS 353 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcE-EEEEe-cCcEEEECCCCCee
Confidence 77777764 578999999876554311100 0 0011111111110 122 4554 55554 45666666544333
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC-cEEEEECCCCceEEEeecCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~~~~l~~h~~ 348 (475)
....++..|. -..+..+++-++.|..|| .+-|+|.++++ +..+...-+
T Consensus 354 -iqv~~~~~Vr-----------------------------Y~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg 402 (668)
T COG4946 354 -IQVGKKGGVR-----------------------------YRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG 402 (668)
T ss_pred -EEcCCCCceE-----------------------------EEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence 2344555677 667777778899999998 88999988775 456666788
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC----eEEEEECCCCee
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD----FVHVYDVKSGYE 424 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg----~i~iwd~~~~~~ 424 (475)
.|.++..+|+|++++.++....+-+.|+.+ +.+...-+...+-|+.+.|+|+++++|-+-.+| .|++||+.+++.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999999999999999999999999999987 565555555667899999999999999998776 699999988765
Q ss_pred EEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 425 KEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 425 ~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
... ....+.-.+.+|.|||++|.--
T Consensus 482 y~v-TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDV-TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEe-cCCcccccCcccCCCCcEEEEE
Confidence 433 3344555678899999998754
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.2e-08 Score=96.78 Aligned_cols=197 Identities=15% Similarity=0.244 Sum_probs=135.0
Q ss_pred EecCceEEEEeCCCCCce--EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-----------CCeEEEEECCCCeeee
Q 011924 205 GGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-----------DCGVRDFDMGKYQLSK 271 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-----------dg~v~iwd~~~~~~~~ 271 (475)
+|.-+.|++|.....+.. ...+.+.. ...+.+.+++-|.-+|+.++. ..++++.+++...+.-
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 466788999987632211 10111111 123444447777766665533 2467788887556666
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCC
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDF 349 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~ 349 (475)
.+...+||. ++.|+|+|+-++++. .--.+.|+|++ ++++..+. +++
T Consensus 266 ~L~k~GPVh-----------------------------dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egp 313 (566)
T KOG2315|consen 266 PLLKEGPVH-----------------------------DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGP 313 (566)
T ss_pred ecCCCCCce-----------------------------EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCC
Confidence 666788899 999999999887764 34578899986 66766654 567
Q ss_pred eEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC------CCeEEEEECC
Q 011924 350 SFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVK 420 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~------dg~i~iwd~~ 420 (475)
=.++-|+|.|++++.++. -|.+.|||+.+ .+++..+.... -+-+.|+|||+++++++. |+.++||+.
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy- 389 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY- 389 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence 778899999999998865 57899999987 77777777654 356889999999998874 577999996
Q ss_pred CCeeEEEEeccCCCeEEEEEcC
Q 011924 421 SGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+|..+.... ...+...+.|-|
T Consensus 390 tG~~l~~~~-f~sEL~qv~W~P 410 (566)
T KOG2315|consen 390 TGSLLHEKM-FKSELLQVEWRP 410 (566)
T ss_pred cCceeehhh-hhHhHhheeeee
Confidence 454443221 222567777765
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=1.4e-07 Score=103.84 Aligned_cols=241 Identities=10% Similarity=0.088 Sum_probs=144.1
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCC------------CceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDN------------AITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~------------~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
++.++++-..++.|++++..... . ..... +.. ..-..|++ .++++.++++-...+.|+++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~-i--~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNF-I--VQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCE-E--EEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceEEEEec
Confidence 46678888888999999976422 1 11111 110 12356777 7877765666666788999998
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.++.. .++...+...+...+... +. ...+..-..++++| ++.++++.+.++.|++||..++... .+
T Consensus 654 ~~~~V-~tlag~G~~g~~~~gg~~----------~~-~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 654 VNETV-RTLAGNGTKGSDYQGGKK----------GT-SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred CCCEE-EEEeccCcccCCCCCChh----------hh-HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 77543 333211100000000000 00 00000111789999 5666677778889999998776542 22
Q ss_pred ecC---------------CCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCCceEEE------------Eec-------
Q 011924 344 CGH---------------LDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSESVAV------------LKG------- 388 (475)
Q Consensus 344 ~~h---------------~~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~~~~~~------------~~~------- 388 (475)
.+. -.....++++|++..|+ +-+.++.|++||+.+....+.. +..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 211 12356799999988554 5556789999999753221111 000
Q ss_pred -CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-------------ccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 389 -NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-------------DFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 389 -~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.......++++++|+++++-+.++.|++||..++....... .......+++++++|+.+++.+.+.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 01124589999999988888889999999998875543221 1123578999999998666655555
Q ss_pred Cc
Q 011924 455 TY 456 (475)
Q Consensus 455 ~~ 456 (475)
.+
T Consensus 881 ~I 882 (1057)
T PLN02919 881 LI 882 (1057)
T ss_pred EE
Confidence 44
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1.3e-06 Score=80.99 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=139.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC-CCCCeEEEEEeCCCeEEEEECCCCeeeeeeec-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF- 275 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s-~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 275 (475)
++.++++--..+.|+.|+........ ... .. ...+.+ . ++|. ++.+.. +.+.++|..+++.......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~--~~-~~G~~~--~~~~g~--l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV---IDL--PG-PNGMAF--DRPDGR--LYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE---EES--SS-EEEEEE--ECTTSE--EEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE---Eec--CC-CceEEE--EccCCE--EEEEEc-CceEEEecCCCcEEEEeecc
Confidence 45667777788999999987654331 111 11 455566 5 5653 444444 4456669988866544442
Q ss_pred -----cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC--------CcEEEEECCCCceEEE
Q 011924 276 -----PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTIAS 342 (475)
Q Consensus 276 -----~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--------g~i~iwd~~~~~~~~~ 342 (475)
....+ .+++.|+|++.++.... |.+..++.. ++....
T Consensus 80 ~~~~~~~~~N-----------------------------D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 80 DGGVPFNRPN-----------------------------DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTCSCTEEEE-----------------------------EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCCcccCCCc-----------------------------eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 12233 89999999977776533 557777766 554433
Q ss_pred eecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCCc------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSE------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
.. .......++|+|+++.|+ +-+..+.|..+++..... ....+....+..-.+++.++|++.++....+.|.
T Consensus 130 ~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 130 AD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 33 456688999999998776 556678899999864333 1112222223477899999999888777788999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEe
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISF-SPDTESLFIGVW 452 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~ 452 (475)
+++.. |+.+..+......+++++| -|+.+.|++.+.
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 99976 8887777765568999999 578888888763
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=4.7e-07 Score=89.56 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=166.5
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...||+.. ++.+..++..+++..-..++.+.+ ..+...++..+++++.+|.+..+|..+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~------------------~~~p~v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL------------------SGGVGADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc------------------ccceEEcCCEEEEEcCCCEEEEEECCCCc
Confidence 34566654 467888887777654333332211 11233467888889999999999988776
Q ss_pred ceEEEeeecCCCCceeE-EEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccE-Ee-------ccCCceE---
Q 011924 221 VSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV-NV-------SSSYCII--- 288 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~-l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-~~-------s~~~~~l--- 288 (475)
........ +.+.+ ..+ .+.. ++.++.++.|..||.++++.+..+....+. .+ ..++..+
T Consensus 127 ~~W~~~~~----~~~~~~p~v----~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~ 197 (377)
T TIGR03300 127 ELWRAKLS----SEVLSPPLV----ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGF 197 (377)
T ss_pred EeeeeccC----ceeecCCEE----ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEEC
Confidence 55432221 11211 111 2333 566668999999999999887665532211 10 0111111
Q ss_pred --EEEEEeecccceEEEEeee-----------eeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q 011924 289 --LLCRLLNFMTEKVIICLLC-----------LQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 353 (475)
Q Consensus 289 --~~~~v~d~~~~~~~~~~~~-----------i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~ 353 (475)
..+..+|..+|+....... +..+.-+| .+..+++++.++.++.+|..+|+.+..... .. ....
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p 275 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGP 275 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCc
Confidence 1455667777765432210 00011122 355777788899999999999988776652 11 1112
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
. ..+..++.++.+|.+..+|..+ ++.+-.... ......+... .+..|++++.+|.|+++|..+|+.+.....+.
T Consensus 276 ~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 276 A--VDDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred e--EeCCEEEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 2 2567788888999999999976 554433321 1112222222 46688999999999999999999888776555
Q ss_pred CCe-EEEEEcCCCCeEEEEEecCCc
Q 011924 433 GEI-SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 433 ~~i-~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+ ....+. + ..|++++.||.+
T Consensus 351 ~~~~~sp~~~-~-~~l~v~~~dG~l 373 (377)
T TIGR03300 351 SGIASPPVVV-G-DGLLVQTRDGDL 373 (377)
T ss_pred CccccCCEEE-C-CEEEEEeCCceE
Confidence 332 333333 2 468888888765
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1e-07 Score=94.69 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=126.4
Q ss_pred EEEEEE--cCcE-EEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEE
Q 011924 192 VSTLAV--KDKL-LVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFD 263 (475)
Q Consensus 192 v~~l~~--~~~~-lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd 263 (475)
+..-.| +|+. ++..+. ...|+++++.+.... .+. ...+......| +|+|+.++++.+.+ ..|.+++
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIA-SSQGMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---EEe-cCCCcEEeeEE--CCCCCEEEEEEccCCCcEEEEEE
Confidence 444555 7764 554333 356888888665433 222 23444556677 99999877776555 4577778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~ 340 (475)
+.+++.......+.... ...|+|||+.|+..+.. ..|+++|+.+++..
T Consensus 264 l~~g~~~~LT~~~~~d~-----------------------------~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 264 TNTKTLTQITNYPGIDV-----------------------------NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred CCCCcEEEcccCCCccC-----------------------------ccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 87776544333333222 45799999988887643 36888898877764
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
+... .... ...|+|+|+.|+..+.. ..|.+.|+.. +. .+.+... +......|+|||+.|+..+..
T Consensus 315 rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 315 QVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred eCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 3332 1112 24899999998877653 2577788865 33 3445443 233468999999988776543
Q ss_pred ---CeEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 412 ---DFVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 412 ---g~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
..+.+.++.. .....+....+.+...+
T Consensus 389 ~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 389 GNQSALGIIRLNY-NKSFLFPLKVGKIQSID 418 (419)
T ss_pred CCcEEEEEEecCC-CeeEEeecCCCccCCCC
Confidence 2477777754 33344444445555443
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=1.8e-09 Score=106.91 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=161.2
Q ss_pred cccccceeEEEEEE-----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe
Q 011924 184 LEGFTQTQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (475)
Q Consensus 184 ~~~~~~~~v~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~ 258 (475)
+.+...-+|-.+.| ....+|+.+ ...-.+|++........-..+.+|...|+.+.| +|...-++++++-|-.
T Consensus 62 l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 62 LHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTY 138 (1081)
T ss_pred eeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceecccc--CCCCCcceeecccccc
Confidence 34444445555555 334555544 445668998766655445677899999999999 8888778999999999
Q ss_pred EEEEECCCCe-eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 259 VRDFDMGKYQ-LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 259 v~iwd~~~~~-~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
|..||++... .+..+. -..... .++|+.....+.+.+....|++||++.
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~as-----------------------------qVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSAAS-----------------------------QVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred ceeeeccCCCcceeeeecccccCc-----------------------------eeeecccCcchhhhccCCceEEEeccC
Confidence 9999997633 222222 111222 678888544555556777899999995
Q ss_pred C-ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC--CEEEEEcCCC
Q 011924 337 G-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPAD 412 (475)
Q Consensus 337 ~-~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg--~~la~~~~dg 412 (475)
| .++..+++|...|..++|.. .-..+.+.+.|++|+.||..+..+.-........+|..-+|-|-| .++.---.+.
T Consensus 190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence 5 57889999999999999976 445688899999999999976444333333445678888888844 3443333334
Q ss_pred eEEEEECCC----------CeeEEEEeccCCCeEEEEEcCCCC----------eEEEEEecCCcc
Q 011924 413 FVHVYDVKS----------GYEKEQEIDFFGEISGISFSPDTE----------SLFIGVWDRTYG 457 (475)
Q Consensus 413 ~i~iwd~~~----------~~~~~~~~~~~~~i~~l~fspdg~----------~l~~~~~D~~~~ 457 (475)
.|.+++.++ ...+..+.+|...|....|-..++ .|++-+.|.+++
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 566655432 245777888887776665544322 456666666553
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=1.6e-06 Score=95.58 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=129.5
Q ss_pred EEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEEee------ecCC-------CCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 193 STLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCSRT------TYDD-------NAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 193 ~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~~~------~~~~-------~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
..+++ +++.| ++-..++.|+++++.+......... ..+. -..-..+++ +|++..++++.+.+
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~ 704 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQ 704 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCC
Confidence 45555 56654 4445567888888765432211000 0000 001245777 88555568888888
Q ss_pred CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE-EEeCCCcEEEEECC
Q 011924 257 CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI-IVGDNPDGLLVDSM 335 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~-~~~~dg~i~iwd~~ 335 (475)
+.|++|+..++... .+...+... ..++. .. ..........++++|+|+.|+ +-+.++.|++||+.
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~-~~~g~-----------~~-~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYER-NLNGS-----------SG-TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccc-cCCCC-----------cc-ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 99999999776543 221110000 00000 00 000011222789999998554 55567899999998
Q ss_pred CCceEEEeec---------------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec------
Q 011924 336 TGKTIASLCG---------------------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG------ 388 (475)
Q Consensus 336 ~~~~~~~l~~---------------------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~------ 388 (475)
++.......+ .......++++|+|+++++-+.+++|++||..+ +. +..+.+
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G~ 848 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAGF 848 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EEEEeccCCcCC
Confidence 7653211100 011346889999999888888999999999865 33 323322
Q ss_pred --------CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 389 --------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 389 --------~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
.......++++++|+++++-+.++.|++||+.++..
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999888888999999999988754
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=3.6e-07 Score=98.91 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=158.0
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEE----eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICK----HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
...|.++.+ +..-|+.+..+|.|.+. +....... ....-...|.+.+| |||+.. ++..+.+++|.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~W--SPD~El-la~vT~~~~l~~m 147 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVDSGILAASW--SPDEEL-LALVTGEGNLLLM 147 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEcCcEEEEEE--CCCcCE-EEEEeCCCEEEEE
Confidence 357889988 78888999999999998 44433322 22334556899999 999996 6666678888776
Q ss_pred ECCCCeeeeeee-------ccccEE---------eccCCceEEEEEEeecc-----cceEEEEeeeeeeEEECCCCcEEE
Q 011924 263 DMGKYQLSKHFR-------FPWPVN---------VSSSYCIILLCRLLNFM-----TEKVIICLLCLQHSSQSPDGKLLI 321 (475)
Q Consensus 263 d~~~~~~~~~~~-------~~~~v~---------~s~~~~~l~~~~v~d~~-----~~~~~~~~~~i~~~~~sp~g~~l~ 321 (475)
. ..+..+.... ....|+ |...+..-+.-.+-++. .+... ....-..++|..||.++|
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFA 225 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEE
Confidence 4 3444443332 111222 22221111110011110 00000 111223789999999999
Q ss_pred EEeC------CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEEEEe----c
Q 011924 322 IVGD------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLK----G 388 (475)
Q Consensus 322 ~~~~------dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~~~~----~ 388 (475)
+.+- ...++||+ +.|....+-+.-.+--.+++|.|.|++||+... ...|.+|.- | +-....+. .
T Consensus 226 Vss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N-GLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N-GLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C-CcEeeeEecCCCC
Confidence 8763 35789999 457765555544444567899999999998865 345666764 4 33333332 2
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEecc--CCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDF--FGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~--~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
....|..++|++|+..||..-.+. |.+|-..+.. -+++.... ...+..+.|+|.. ..|.+...++.+
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 346789999999999999987665 9999987753 23333322 2345669999954 446666654444
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=9.4e-08 Score=87.21 Aligned_cols=242 Identities=13% Similarity=0.148 Sum_probs=164.2
Q ss_pred ecccceeE-EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 130 HFQLRNLV-WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 130 h~~lr~l~-~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
|+.+.|.. .-+....|+.+ .+..+++|....... .-|+ +.+..+++++++++ +...|+.|
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---------~wps-------I~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---------YWPS-------IYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc---------cCch-------hhhhCCCCceEeeeeccceEEEEE
Confidence 44444433 23333445554 457788886443211 1111 22334557888888 77889999
Q ss_pred ecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccC
Q 011924 206 GFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
-.+|++.-+.+...- .....+....|...+..+-| +-.-.. +++.+.|..+.---.+.+..+..+.......
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if--~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t---- 159 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF--SLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPAS---- 159 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe--cCCcee-EEEeccccceEEEeeccCCcccceEeeccCC----
Confidence 999999888764322 12223556678888998888 555555 7777788776544445555554443222222
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC--CCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS--MTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
++.+.-. +..+|...|.|.+..+ ..-.++.++.+|.+.+.+++|.|....|
T Consensus 160 -------------------------~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 160 -------------------------ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred -------------------------CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 2222211 4455555666655544 3456788999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+|..|..+.+||+--.......+.+|...|+.+..-+--+.|.+++.||.|.+|++..
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999754556778889999999999888888999999999999999864
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=1e-06 Score=95.47 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=134.9
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE----ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDF----DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw----d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
..+.|.++.+ -++... ++.+..+|.|.+. +......-..-.....|.
T Consensus 74 ~~~~ivs~~y--l~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-------------------------- 124 (928)
T PF04762_consen 74 PNDKIVSFQY--LADSES-LCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-------------------------- 124 (928)
T ss_pred CCCcEEEEEe--ccCCCc-EEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE--------------------------
Confidence 3455666666 677665 6667788988888 444333222222455666
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECC---------------C--------CceEEEeec------------------
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSM---------------T--------GKTIASLCG------------------ 345 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~---------------~--------~~~~~~l~~------------------ 345 (475)
+++||||+.+|+.++.++++.+.... . |+.-..|.|
T Consensus 125 ---a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 125 ---AASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred ---EEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 99999999999999988888876421 0 111111111
Q ss_pred ------CCCCeEEEEEecCCCEEEEEeC---C---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---
Q 011924 346 ------HLDFSFASAWHPNGVTFATGNQ---D---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--- 410 (475)
Q Consensus 346 ------h~~~v~~~~~sp~g~~l~t~s~---d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~--- 410 (475)
+.+.-..++|-.||.+||+.+- . ..+|||+-. +....+-..-.+--.+++|.|.|.+||+...
T Consensus 202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 1223456889999999999874 2 579999974 4443333333333457899999999998764
Q ss_pred CCeEEEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE-eecceeeecc
Q 011924 411 ADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFIGVWDRTYGSLLEYG-RCRNYSYLDS 473 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~-~~~~~~~l~~ 473 (475)
...|.+|. ++|-....+.- ....|..+.|++|+..||+...|. +++. ++..+.||+.
T Consensus 280 ~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-----vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 280 RHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-----VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-----ceEEEeeCCEEEEEE
Confidence 35688888 67765555443 235799999999999999988765 4444 4444567764
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=2.7e-07 Score=91.65 Aligned_cols=283 Identities=17% Similarity=0.111 Sum_probs=183.9
Q ss_pred ecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 130 HFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 130 h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
|.+|+..-|.-..+.|... .++.+.+....+... -.+.+|..+++.-.-.+.+++ +...|.-+.| ..+.|-+..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~--d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT--DLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC--cccccccccccccchhhhhcc-CcceEEEEEeccccccccccC
Confidence 4556656677666666664 345555544322211 122222111111111111222 3346777788 567888899
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
.+|-|.||-+..+.... .-+.....+.|.+++| +.+|.. +.....||.|.+=.+...+.-..--......
T Consensus 91 t~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsW--n~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~------ 160 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSW--NLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLA------ 160 (1189)
T ss_pred CCceEEEEeeecccHHH-HHhhCcCccEEEEEEE--cCCCcE-EEEEEccCCEEEEeeccceecchhcchhecc------
Confidence 99999999987655321 1122334567888888 999997 7777899998887776544322111122233
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-------ceEEE----eecCCCCeEEEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-------KTIAS----LCGHLDFSFASAW 355 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-------~~~~~----l~~h~~~v~~~~~ 355 (475)
++.|++|.+.++.+-.+|.++++|.+.. .+... +......+-.+.|
T Consensus 161 -----------------------hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 161 -----------------------HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred -----------------------ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 7789999999999989999999997532 11111 1112233555666
Q ss_pred e--------cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---------CeEEEEE
Q 011924 356 H--------PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---------DFVHVYD 418 (475)
Q Consensus 356 s--------p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---------g~i~iwd 418 (475)
. |+...||.+-..|.+.|..-.+...|+..-.+ -.+..+.|+++|.+||+++.+ +.|++|.
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 3 47789999999999999887775666655554 467899999999999998864 3677777
Q ss_pred CCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 419 VKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.-|..+..+......|++++|-..|-.++.+.
T Consensus 296 -p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 296 -PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred -cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 34667777777778899999998888888765
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.1e-09 Score=110.39 Aligned_cols=241 Identities=16% Similarity=0.163 Sum_probs=170.7
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-eEEEEECC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMG- 265 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-~v~iwd~~- 265 (475)
...+|++| ..+.|+.|+..|+|+++++.++.-. ....+|+++|+.|.- +.+|..+|.+++... -..+|++.
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccc--cCCcceeeeeccccCchHHHhcccc
Confidence 35677888 7889999999999999999876544 556789999999988 899998777666555 56799985
Q ss_pred CCeeeeeeeccccEEeccCC--ceEE----EEEEeecccceEEEEee--------eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 266 KYQLSKHFRFPWPVNVSSSY--CIIL----LCRLLNFMTEKVIICLL--------CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~--~~l~----~~~v~d~~~~~~~~~~~--------~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
++...+.|.....|.|+... +.++ ...+||..++....+.. .-.++.|||+.++++ .|| .+
T Consensus 1177 ~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vL 1251 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VL 1251 (1516)
T ss_pred ccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--ee
Confidence 47777888877888887542 2222 57899999887655422 124788999988876 444 68
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC-
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP- 410 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~- 410 (475)
||.+..+.++.|......+. -.|||+|+.++.-+ .|||+|+ .+.++....-. -..+.|...|..++..-.
T Consensus 1252 WDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RT-F~lLh~VP~Ld--qc~VtFNstG~VmYa~~~~ 1322 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRT-FKLLHSVPSLD--QCAVTFNSTGDVMYAMLNI 1322 (1516)
T ss_pred eeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHH-HHHHhcCcccc--ceEEEeccCccchhhhhhh
Confidence 99998888888775554443 35999999998875 4899998 67676665432 257889888887765431
Q ss_pred -C---------------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 411 -A---------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 411 -d---------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
| ...+-||...-..+.++ .....+..++-+|...+|.+-
T Consensus 1323 ~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1323 EDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-PVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred hhhhhhhcccccccchhhhhccccccccccceee-ecccchhhhhcCCccceEEEE
Confidence 0 12333443333333333 234567788888888888765
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=6.3e-09 Score=112.22 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=139.1
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
|.++.- +|.... .++|+.||.|++|....++.+..++.. ..|+ .+.
T Consensus 2211 v~r~~s--Hp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt-----------------------------r~~ 2258 (2439)
T KOG1064|consen 2211 VRRMTS--HPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT-----------------------------RSR 2258 (2439)
T ss_pred eeeecC--CCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhh-----------------------------hhh
Confidence 444444 777665 899999999999999988888887743 4444 778
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCCceEEEEecC
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~~~~~~~~~~~ 389 (475)
|+.+|+.+.++..||.+-+|.+. .++....+.|........|-. ..+++++ .++.+.+||.-.+...-..-+.|
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 99999999999999999999976 777778888998888888865 6677765 46789999986433322223789
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+.++++++-|..+.|++|+.+|.|.+||++..+.+..+.. +. ...+++.|+..|.++
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 99999999999999999999999999999987665544432 33 445677777776665
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=6.5e-09 Score=91.17 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=74.9
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRY 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~ 404 (475)
+..+.|+++..+.+..-......|.+++-|| ..+++++|+.||.+.+||+|+..-++..++.|..+++.+.|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 3456676664333222122234599999999 6678889999999999999997778888899999999999999 6689
Q ss_pred EEEEcCCCeEEEEECCC
Q 011924 405 MATAEPADFVHVYDVKS 421 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~ 421 (475)
|.+++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999664
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=3.5e-08 Score=91.79 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=103.7
Q ss_pred cCcEEEEEecCceEEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEE--EEeCCCeEEEEECCCCeeeeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFT--ASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~--s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
.+++|+.+.......++++..... ..+.... .-...-+++.+ ..+....++ .++....+.+|....+.+...+.
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~--~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG 149 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISF--IREDTSVLVADKAGDVYSFDILSADSGRCEPILG 149 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeee--eeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence 556666666666665666544332 1111111 11112233333 222222222 23455566777766667666777
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEE
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFAS 353 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~ 353 (475)
|...+. .++|+||+++++++..|..|++-.......+..+. ||+..|..+
T Consensus 150 hvSml~-----------------------------dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 150 HVSMLL-----------------------------DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred hhhhhh-----------------------------eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 888888 99999999999999999999998876555555554 799999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
+.-++ ..|++|+.|++|++||+++ ++.+.++.
T Consensus 201 sl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN-YLLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred eeccC-ceeeecCCCCcEEEEeccc-CCcccccc
Confidence 99775 4589999999999999988 66555554
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=5.3e-08 Score=99.08 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=138.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (475)
++..++.||....+..+|+.+.... +...-..+.|.-+ ..+++. +.+|...|+|.+-|.++.+.++++. |.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~im----R~Nnr~-lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIM----RYNNRN-LFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---eeeeccCCceEEE----EecCcE-EEeecccceEEeecCCcCceeeeeeccc
Confidence 6778999999999999998865433 2322222234433 346664 8899999999999999999999998 88
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------CCcEEEEECCCCceEEEeecCC
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------NPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+.+. +|+-.|++|+++|. |..|+|||+|..+.+.-+.-+.
T Consensus 218 ~siS-------------------------------DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~ 266 (1118)
T KOG1275|consen 218 GSIS-------------------------------DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY 266 (1118)
T ss_pred ccee-------------------------------eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc
Confidence 8887 77788999999874 5678999999887776666555
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 348 DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 348 ~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
++ .-+.|+| -...++++++.|.+.+-|....+. .+..+......+..+.+|++|..||.|..+|.|++|-
T Consensus 267 ~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Cc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 54 3478899 456788889999999999443333 2334444455699999999999999999999999997
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.1e-07 Score=95.68 Aligned_cols=182 Identities=17% Similarity=0.250 Sum_probs=134.2
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
-.++|.++.+.+|+.|+..|.|++.+....- .....|.+. ..+|.+ +++||.||+|.|..+-+.+.
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-----~~~~~~s~~--------~~~Gey-~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP-----KTNFDHSSS--------ILEGEY-VASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCcc-----ccccccccc--------ccCCce-EEEecCCCcEEEeeccCCcc
Confidence 3577888899999999999999998875432 111122221 346776 99999999999999999998
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----CcEEEEEeCCCcEEEEECC-CC-ceEEE
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----GKLLIIVGDNPDGLLVDSM-TG-KTIAS 342 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~~~dg~i~iwd~~-~~-~~~~~ 342 (475)
...+.+..++. +++++|+ .+.+++||..| +.++.-+ -| +....
T Consensus 106 ~~~~df~rpik-----------------------------sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 106 ITQYDFKRPIK-----------------------------SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred ceeEecCCcce-----------------------------eEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 88899999999 9999997 67899999888 7777643 12 22224
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce------EEEEEccCCCEEEEEcCCCeEEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI------RSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v------~~l~~spdg~~la~~~~dg~i~i 416 (475)
+..-.++|.++.| .|+++|-++.+| |+|||+.. .+.+..++.....+ ..+.|.++.+ |+.|=.| +|+|
T Consensus 156 l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i 229 (846)
T KOG2066|consen 156 LSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKI 229 (846)
T ss_pred eecCccceEEEEe--cCcEEEEecCCC-cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEE
Confidence 5566789999999 688999998887 99999976 55555555433333 3577776654 5555444 6999
Q ss_pred EECCC
Q 011924 417 YDVKS 421 (475)
Q Consensus 417 wd~~~ 421 (475)
..++.
T Consensus 230 ~~I~~ 234 (846)
T KOG2066|consen 230 CSIKK 234 (846)
T ss_pred EEEec
Confidence 88873
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=9.6e-08 Score=87.14 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=153.9
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE-CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd-~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
....++...+++... -|...- +++.+.|.++|+|- ...++.-..+. .+.+++
T Consensus 18 ~~~eG~~d~vn~~~l--~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~---------------------- 72 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAIL--IPKEEG-VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCS---------------------- 72 (404)
T ss_pred hhhcCchhhhhhhee--ccCCCC-eEEccccceeeeEEeccccccCchhhhhCCCCce----------------------
Confidence 344566667777666 454444 88999999999994 34455444443 466777
Q ss_pred EEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC----CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~----~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
++++.+....|++|-.+|++.-+.+. ....++....|..+++.+-|+-....+++.+.|..+.---.+.
T Consensus 73 -------~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 73 -------AMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred -------EeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 88999999999999999999887654 2334445556888888888877777777777665433111110
Q ss_pred ----------------------------------------CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 379 ----------------------------------------LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 379 ----------------------------------------~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.-.++..+.+|.+.+++++|.|..+.|.+|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 1235667788999999999999999999999999999999
Q ss_pred CCCCe-eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc-eEEEEEeecceeeecc
Q 011924 419 VKSGY-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG-SLLEYGRCRNYSYLDS 473 (475)
Q Consensus 419 ~~~~~-~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~-~ll~~~~~~~~~~l~~ 473 (475)
+--.+ ......+|...|..+..-+-.+.|++++.|+.+- .-+.-.|....+||++
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s 282 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDS 282 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccccc
Confidence 86543 2345567888899998888889999999997663 2233345555666654
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.84 E-value=2.1e-06 Score=82.43 Aligned_cols=218 Identities=10% Similarity=0.062 Sum_probs=142.8
Q ss_pred eeEEEEEE----cCcEEEE-----EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe------
Q 011924 190 TQVSTLAV----KDKLLVA-----GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN------ 254 (475)
Q Consensus 190 ~~v~~l~~----~~~~lvs-----g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s------ 254 (475)
..|+.+++ ++..|+. ++..+.+++|.+..+.......++. +..+.+.+.+.|+++++-.-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-----~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-----VSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-----ecccEEEEecCCceEEEEEEEeeecc
Confidence 34566665 3334443 4677899999998655543333322 23344444888887555331
Q ss_pred ----CCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCc
Q 011924 255 ----NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPD 328 (475)
Q Consensus 255 ----~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~ 328 (475)
....+.+++++...+........+|. ..+|+|.++.+++.+ ....
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVh-----------------------------df~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVH-----------------------------DFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred cceeccceEEEEeecccccceeccccccce-----------------------------eeeecccCCceeEEecccccc
Confidence 12456777776433322223456777 999999998887765 5667
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE
Q 011924 329 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
+.++|++.. .... .....=..+.|+|.+++++.++-| |.+.+||......++..+.+. ..+-+.|+|||.++
T Consensus 300 ~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~ 374 (561)
T COG5354 300 VSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY 374 (561)
T ss_pred eeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEE
Confidence 889998754 3333 344455667899999999997764 579999997533444455544 34567899999998
Q ss_pred EEEc------CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 406 ATAE------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 406 a~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.++. .|..|.|||+.... .. +.+.+.|.|.|++..+.+.+.
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EecCCCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeeccCC
Confidence 8764 36789999986532 21 566788888888887776665
No 287
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.82 E-value=3.3e-06 Score=81.10 Aligned_cols=276 Identities=11% Similarity=0.106 Sum_probs=169.1
Q ss_pred eecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 129 LHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
..+..++..+++-+..+++.....|..|..-+... +..+ ....|.-+.+ .+++|++=.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~------------------~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRF------------------RHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeee------------------ecCCceecccCcccceeeeec
Confidence 34566777888888888888888899997655442 1111 1123444444 777777754
Q ss_pred cCc---------------eEEEEeCCCCCceEEEeeecCCCCcee-EEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 207 FQG---------------ELICKHLDRPGVSFCSRTTYDDNAITN-AVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 207 ~dg---------------~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
..+ .+.+||...+...+......... ..+ -+.| +.+.++ ++-- -...+.++++ +...-
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~--s~~D~y-~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKF--SIDDKY-VARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeee--eecchh-hhhh-ccCeEEEEec-CCccc
Confidence 433 48899987766553322222111 123 5666 666654 3222 2346888887 33221
Q ss_pred -eeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEE-----EeCCCcEEEEECCCCceE
Q 011924 271 -KHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLII-----VGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 271 -~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~-----~~~dg~i~iwd~~~~~~~ 340 (475)
..+. .+..+. ..+|+|. +..||. .+..+.+++|.+..++.+
T Consensus 165 ~~p~~~lr~~gi~-----------------------------dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 165 EHPFKNLRPVGIL-----------------------------DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cCchhhcccccee-----------------------------eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 1111 122333 7788884 334443 356788999999877665
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEe-----------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGN-----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s-----------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.+-.-....-..+.|++.|++|+.-- ....+.|++++. ..+.......++|...+|.|.++.+++.+
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEe
Confidence 54433344445689999998876431 124688888864 33333335578999999999887665544
Q ss_pred --CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 410 --PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 410 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
....+.++|++.. .. +....+.=..+.|||.+++++.++.|...|.+.-+..
T Consensus 294 g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 294 GYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 5678999998865 22 2223445556778888888888888877776655543
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=4.1e-05 Score=70.87 Aligned_cols=217 Identities=15% Similarity=0.132 Sum_probs=135.5
Q ss_pred eEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceE
Q 011924 136 LVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 211 (475)
Q Consensus 136 l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i 211 (475)
.+|......||++ ..+.|+.|+..++.... +...+ ...+++ .++.|+.+...+ +
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~~g~l~v~~~~~-~ 62 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRPDGRLYVADSGG-I 62 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECTTSEEEEEETTC-E
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEccCCEEEEEEcCc-e
Confidence 3466656777775 35889999987765433 22211 223333 355666665544 4
Q ss_pred EEEeCCCCCceEEEeee-cC-CCCceeEEEEEeCCCCCeEEEEEeCC--------CeEEEEECCCCeeeeeeeccccEEe
Q 011924 212 ICKHLDRPGVSFCSRTT-YD-DNAITNAVEIYGSPSGAVHFTASNND--------CGVRDFDMGKYQLSKHFRFPWPVNV 281 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~-~~-~~~~v~~l~~~~s~~g~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~ 281 (475)
.++++.+.......... .. .....+.+++ .|+|+. .++.... |.|..++.. ++...........+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN- 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN- 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEE--cCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEecCccccc-
Confidence 55587766544322332 12 3456778888 999984 6665433 456667766 55444444444455
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE-EeCCCcEEEEECCCC-c-e-----EEEeecCCCCeEEE
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII-VGDNPDGLLVDSMTG-K-T-----IASLCGHLDFSFAS 353 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~dg~i~iwd~~~~-~-~-----~~~l~~h~~~v~~~ 353 (475)
.++|+|+++.|++ -+..+.|..+++... . . ...+....+..-.+
T Consensus 138 ----------------------------Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 138 ----------------------------GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp ----------------------------EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred ----------------------------ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 8999999987765 456778888888632 2 1 11222222347889
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE-ccCCCEEEEEc
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY-TSDGRYMATAE 409 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-spdg~~la~~~ 409 (475)
++.++|++.++....+.|.++|.. ++.+..+......+++++| .|+.+.|...+
T Consensus 190 ~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 190 AVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred eEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 999999988888888999999985 7778877776568999999 46766665543
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=2.3e-08 Score=96.20 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=142.5
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
.|.+++. +.+-+++++.|.+|++|.+...+ ...|.-+...|+.+|+.+.| -.+.+. +++ -||.|.+||.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf--L~~lr~-i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF--LADLRS-IAS--CDGGIHLWDP 811 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee--eeccce-eee--ccCcceeecc
Confidence 4666655 67889999999999999987554 34566777889999999998 455443 444 5899999998
Q ss_pred CCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEE-eCCCcEEEEECCCCc
Q 011924 265 GKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIV-GDNPDGLLVDSMTGK 338 (475)
Q Consensus 265 ~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~-~~dg~i~iwd~~~~~ 338 (475)
-.++++.... ..+.+. .+..-| +..+++++ +...+++++|.+.+.
T Consensus 812 Figr~Laq~~dapk~~a~~-----------------------------~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGG-----------------------------NIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cccchhHhhhcCcccCCCc-----------------------------eeEecccCcchheeeeccchhhheeeeccccc
Confidence 7776654332 111111 122222 34444444 678899999999887
Q ss_pred eEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 339 TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 339 ~~~~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
.+..++ +....+++++..|.|+.+|.+-..|+|.+.|.|+ +..+..+....-....++ .|..+.|+....|.+
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsdq~L~~saldHs 940 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSDQALAQSALDHS 940 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-CchhHHHHhhcccce
Confidence 666654 3456789999999999999999999999999998 776766665433333333 355667887777888
Q ss_pred EEE-EECCCCeeEEEEe
Q 011924 414 VHV-YDVKSGYEKEQEI 429 (475)
Q Consensus 414 i~i-wd~~~~~~~~~~~ 429 (475)
+.+ |-.-.|....+..
T Consensus 941 laVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 941 LAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eEeeehhcCCeeeeccC
Confidence 888 8766665444433
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=1.1e-07 Score=88.69 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=84.9
Q ss_pred eEEECCCCcEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 310 HSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.+.+-.+...+.++.. ...+.+|....+.+ ..+-||-..+..++|+||+++|+|+..|..|||-........-...
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 4444444444444443 44445555444443 3456899999999999999999999999999998876533333334
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
-||..-|..++.-++ +.|++|+.|++|++||+.+|+.+..
T Consensus 191 lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 568889999998765 5689999999999999999987644
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=3.3e-08 Score=62.71 Aligned_cols=39 Identities=38% Similarity=0.764 Sum_probs=37.0
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
|+++.++.+|...|.+++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.7e-08 Score=97.04 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=119.9
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-------Ceeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
..+.+|...|.+++. -.+.+. +++++.|++|++|.++. ..+..++. |..+++
T Consensus 729 ~nf~GH~~~iRai~A--idNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~----------------- 788 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAA--IDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH----------------- 788 (1034)
T ss_pred ecccCcHHHhHHHHh--cccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCccc-----------------
Confidence 345577777777765 334443 99999999999999864 22334444 788888
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEec--CCCEEEEE-eCCCeEE
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHP--NGVTFATG-NQDKTCR 372 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp--~g~~l~t~-s~dg~v~ 372 (475)
.+.|-.+-+.++++ ||.|++||.--|+++..+.. ..+.+..+..-| +...++.| +...||+
T Consensus 789 ------------~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVK 854 (1034)
T KOG4190|consen 789 ------------DIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVK 854 (1034)
T ss_pred ------------ceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhe
Confidence 88888887777654 78899999887877664431 122233333334 44555555 6788999
Q ss_pred EEECCCCCceEEEEe-----cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 373 IWDLRNLSESVAVLK-----GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 373 iwd~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
++|.|. ..-+..++ +..+-+++++..|.|++||.|-.+|.|.+.|.++|..+....
T Consensus 855 l~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 855 LFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred eeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 999987 44443333 345678999999999999999999999999999998665443
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=5e-08 Score=88.97 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=112.4
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
++.+.+..|-+-+++++.. ..|.....|- ++.|...++++..|..+|.|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVf-----------------------------AlQf~~s~nLv~~GcRngeI~ 277 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVF-----------------------------ALQFAGSDNLVFNGCRNGEIF 277 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHH-----------------------------HHHhcccCCeeEecccCCcEE
Confidence 3444666777777776543 2333455555 778888899999999999999
Q ss_pred EEECCCC-----ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce---EEEEecCCCceE--EEEEc
Q 011924 331 LVDSMTG-----KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIR--SIRYT 399 (475)
Q Consensus 331 iwd~~~~-----~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~---~~~~~~~~~~v~--~l~~s 399 (475)
.+|++.+ .+.+.+. |...|+++..-. ++.+|.+.+.+|+|++||.|. -++ +..+.+|...-. -+...
T Consensus 278 ~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 278 VIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred EEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccc
Confidence 9999854 4556665 888899987766 788999999999999999997 444 777777754222 23345
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+...++++++.|...+||.+++|..+.++.-
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 6667888899999999999999988877653
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=4e-05 Score=70.40 Aligned_cols=222 Identities=16% Similarity=0.075 Sum_probs=134.1
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
++.|..++..+++..-...+... . ....+..+ .++.+++++.++.|++||..+.+........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~---------------~-~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG---------------I-GGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS---------------C-SSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS
T ss_pred CCEEEEEECCCCCEEEEEECCCC---------------C-CCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc
Confidence 45677788777755443333110 1 11222233 7778888889999999999877765543331
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-eccccEE-eccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVN-VSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
...... ... .+.. ++.++.++.|+.+|..+++.+... ....+.. +..
T Consensus 66 ~~~~~~---~~~----~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~----------------------- 114 (238)
T PF13360_consen 66 GPISGA---PVV----DGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS----------------------- 114 (238)
T ss_dssp SCGGSG---EEE----ETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB------------------------
T ss_pred ccccce---eee----cccc-cccccceeeeEecccCCcceeeeecccccccccccc-----------------------
Confidence 111111 122 2333 555557889999999999988874 3221111 000
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCe----------EEEEEecCCCEEEEEeCCCe-EEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS----------FASAWHPNGVTFATGNQDKT-CRIWD 375 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v----------~~~~~sp~g~~l~t~s~dg~-v~iwd 375 (475)
.+.....+..++++..++.|..+|+++|+.+.......... ..-....++ .++.++.++. +.+ |
T Consensus 115 ---~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 115 ---SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D 189 (238)
T ss_dssp ----SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred ---ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence 11222237888888889999999999999988887644221 122222244 6666666774 565 9
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+.+ ++.+-... ...+..+ ..+.+..|++++.++.|..||+++|+.+-+
T Consensus 190 ~~t-g~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 190 LAT-GEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTT-TEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCC-CCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 987 55342222 2233331 446777888888999999999999987643
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=88.89 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=143.8
Q ss_pred eEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCe
Q 011924 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~ 268 (475)
.|+-+.. ..+++++++.||.++.|.-.........+.+..|.+.+.+++. +.+|- ++.+.+. |..++++|++...
T Consensus 11 ~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~-L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 11 VITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGW-LFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred eeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccce-eEeeccCcccceeEEEeeccc
Confidence 4554444 7889999999999999987652333234556778888888888 88886 4778666 9999999998876
Q ss_pred eeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-C-cEEEE-EeCCCcEEEEECCCCc-eEE
Q 011924 269 LSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-G-KLLII-VGDNPDGLLVDSMTGK-TIA 341 (475)
Q Consensus 269 ~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g-~~l~~-~~~dg~i~iwd~~~~~-~~~ 341 (475)
.+.-+. .|+.+. ...+|. . .++++ .-.++.+.++|-.... +..
T Consensus 88 minmiKL~~lPg~a~------------------------------wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAE------------------------------WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hhhhcccccCCCceE------------------------------EecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 665444 344443 122221 1 13333 3467899999977443 333
Q ss_pred Ee-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceE-------------EEEecCCCceEEEEEccCCCEEE
Q 011924 342 SL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESV-------------AVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 342 ~l-~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~-------------~~~~~~~~~v~~l~~spdg~~la 406 (475)
-+ .-|..+|.++.+.|.+..+++....|-|.-|.....- .+. ..+.-......++.|+|+|..++
T Consensus 138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence 33 4599999999999999999999999999999886211 111 11111234567999999999999
Q ss_pred EEcCCCeEEEEECCCCeeEE
Q 011924 407 TAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~ 426 (475)
+-+.|..|++++.++|+.++
T Consensus 218 tl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccCcccEEEEEEeccchhhh
Confidence 99999999999999986543
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.68 E-value=7.4e-05 Score=73.88 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=77.5
Q ss_pred eEEECC-CCcEEEEE----eCCCc----EEEEECCCCce----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 310 HSSQSP-DGKLLIIV----GDNPD----GLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~----~~dg~----i~iwd~~~~~~----~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
++.||- +...+.+. +.+|. ..+|+....+. +.++ .....+.+++++|+...++.|+.||.|.+||.
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 566665 44445443 22333 24566654432 1222 36778999999999999999999999999998
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.. + +..+....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 289 ~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 54 2 2222223346779999999999999999999999998643
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.67 E-value=1.5e-05 Score=78.78 Aligned_cols=247 Identities=13% Similarity=0.017 Sum_probs=142.9
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...+|+. .++.++-++..+++..-.....+. ........++.++.++.+|.|+.+|..+.+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------------~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE------------------VLSPPLVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce------------------eecCCEEECCEEEEECCCCeEEEEEcCCCc
Confidence 3445553 457788888777765332221110 111122255677778889999999998776
Q ss_pred ceEEEeeecCC---CCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc-----------EEecc--C
Q 011924 221 VSFCSRTTYDD---NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP-----------VNVSS--S 284 (475)
Q Consensus 221 ~~~~~~~~~~~---~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v~~s~--~ 284 (475)
........... ... ....+ . ++ .++.+..++.+..+|+.+++.+.......+ +.-+| .
T Consensus 167 ~~W~~~~~~~~~~~~~~-~sp~~--~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGS-ASPVI--A-DG--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred eeeEEccCCCceeecCC-CCCEE--E-CC--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 55432221110 000 11111 1 23 366777889999999998877654331110 00000 1
Q ss_pred CceE------EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC-eEEEEEec
Q 011924 285 YCII------LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF-SFASAWHP 357 (475)
Q Consensus 285 ~~~l------~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~-v~~~~~sp 357 (475)
+..+ +.+..+|..+++.......-........+..+++++.+|.++.+|..+|+.+......... ..+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--
Confidence 1122 1467788888876654331111111225677888889999999999999887665322221 122222
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce-EEEEEccCCCEEEEEcCCCeEEEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI-RSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v-~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+..+++++.+|.|.++|..+ ++.+..++.+...+ .+.++. + ..|+.++.||.|..|
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 467899999999999999977 77777777555332 223333 3 358888889988765
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=7.6e-05 Score=69.23 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=115.9
Q ss_pred CCCCCeEEEEE----eCCCeEEEEECC-CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC
Q 011924 243 SPSGAVHFTAS----NNDCGVRDFDMG-KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD 316 (475)
Q Consensus 243 s~~g~~~l~s~----s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~ 316 (475)
|++|++++++- +..|.|-|||.. +.+.+..+. +.-... .+.+.|+
T Consensus 59 s~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-----------------------------el~l~pD 109 (305)
T PF07433_consen 59 SPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-----------------------------ELLLMPD 109 (305)
T ss_pred cCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-----------------------------hEEEcCC
Confidence 99999855542 345789999998 667777776 222222 5567788
Q ss_pred CcEEEEEe------------------CCCcEEEEECCCCceEEE--e--ecCCCCeEEEEEecCCCEEEEEeCCC-----
Q 011924 317 GKLLIIVG------------------DNPDGLLVDSMTGKTIAS--L--CGHLDFSFASAWHPNGVTFATGNQDK----- 369 (475)
Q Consensus 317 g~~l~~~~------------------~dg~i~iwd~~~~~~~~~--l--~~h~~~v~~~~~sp~g~~l~t~s~dg----- 369 (475)
|+.|+++. -+.++.+.|..+|+.+.. + .-|...++-+++.++|..++..-..|
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 86666652 235567778888988776 4 23778899999999987665553333
Q ss_pred --eEEEEECCCCCceEEEEec-------CCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 370 --TCRIWDLRNLSESVAVLKG-------NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 370 --~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
.|-+++.. ..+..+.. -.+.+-+|+++++|.++++.+. .+.+.+||..++..+.... -..+.+++
T Consensus 190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva 264 (305)
T PF07433_consen 190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVA 264 (305)
T ss_pred CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeee
Confidence 24444432 22333322 2357889999999998877765 5789999999997765543 24567777
Q ss_pred EcCCCCeEEEE
Q 011924 440 FSPDTESLFIG 450 (475)
Q Consensus 440 fspdg~~l~~~ 450 (475)
-.+++ ++++.
T Consensus 265 ~~~~~-f~~ss 274 (305)
T PF07433_consen 265 PTDDG-FLVSS 274 (305)
T ss_pred ecCCc-eEEeC
Confidence 77776 55444
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=3.8e-05 Score=70.55 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=128.0
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
+|+|.++|..+.+..............+.. . .+.+.. +++++.++.|..||..+++.+..+..+.++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~---~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-A---VPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPIS------- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-E---EEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGG-------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-E---EEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccc-------
Confidence 688899998776666544332222222211 2 224454 6666799999999999999988887655444
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe-ecCC---CCeEEEEEecCCCEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHL---DFSFASAWHPNGVTFA 363 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l-~~h~---~~v~~~~~sp~g~~l~ 363 (475)
... ...+..+++++.++.++.+|..+|+.+... .... ...........+..++
T Consensus 70 ----------------------~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 70 ----------------------GAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY 126 (238)
T ss_dssp ----------------------SGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEE
T ss_pred ----------------------cee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEE
Confidence 111 124556666667889999999999998874 3221 1122233333578889
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCc----------eEEEEEccCCCEEEEEcCCCe-EEEEECCCCeeEEEEeccC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGA----------IRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~----------v~~l~~spdg~~la~~~~dg~-i~iwd~~~~~~~~~~~~~~ 432 (475)
.+..++.|..+|+++ ++.+-........ +..-....++ .+..++.++. +.+ |++++..+-. .. .
T Consensus 127 ~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~-~~-~ 201 (238)
T PF13360_consen 127 VGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWS-KP-I 201 (238)
T ss_dssp EEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEE-EC-S
T ss_pred EEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEE-ec-C
Confidence 998899999999987 7776666553321 1122222345 6666666774 555 9999986642 22 3
Q ss_pred CCeEEEEEcCCCCeEEEEEecC
Q 011924 433 GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..+.. ...+++..|++++.++
T Consensus 202 ~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 202 SGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp S-ECE-CEECCCTEEEEEETTT
T ss_pred CCccC-CceeeCCEEEEEeCCC
Confidence 33333 2456778888887553
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.63 E-value=6.5e-07 Score=91.40 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=132.8
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCc
Q 011924 250 FTASNNDCGVRDFDMGKYQLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPD 328 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~ 328 (475)
++.|+....+..+|+.+.+..+.... ...+. -...+++.+.+|...|+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~-------------------------------imR~Nnr~lf~G~t~G~ 198 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVT-------------------------------IMRYNNRNLFCGDTRGT 198 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceE-------------------------------EEEecCcEEEeecccce
Confidence 77777888888899998888776652 22344 34457899999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---------CCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 329 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
|.+-|.++-+.++++..|++.+.++.. .|++|++++. |.-|+|||+|+ -+.+..+.-+.++ .-++|.
T Consensus 199 V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 199 VFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFH 274 (1118)
T ss_pred EEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhc
Confidence 999999999999999999999976554 7899999874 55699999998 4444444444443 568888
Q ss_pred cCC-CEEEEEcCCCeEEEEECC---CCe-eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 400 SDG-RYMATAEPADFVHVYDVK---SGY-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 400 pdg-~~la~~~~dg~i~iwd~~---~~~-~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
|.= ..+|+++..|...+.|.. +.. .+..+......+.++.+|++|..|+.|-.++.+.-+-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 853 578888999999999943 321 1222333344599999999999999998888775444
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=5.4e-06 Score=73.50 Aligned_cols=169 Identities=8% Similarity=-0.069 Sum_probs=113.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN 326 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d 326 (475)
.|+.|+.-|...+|.+.+.+....+- +...|.+.. ..+- ....+..++.|
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--------------------------r~cd--~~~~~~i~snd 137 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--------------------------RYCD--LKFPLNIASND 137 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhh--------------------------hhcc--cccceeeccCC
Confidence 48888889999999988655433222 222222100 1111 11235566778
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~ 404 (475)
.++++.++.-+..-..+....-...+++++|+++++++.+....|-.|.+...+..+.. .......-.+..|+.....
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~ 217 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ 217 (344)
T ss_pred cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce
Confidence 88888877644322222111123788999999999999999999999999875554333 2223344568899999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEE-----EeccCCCeEEEEEcCCCC
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQ-----EIDFFGEISGISFSPDTE 445 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~l~fspdg~ 445 (475)
+|++..||++.|||++....+.. -..|.|.++.+.|+|.|.
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99999999999999987543322 234889999999998663
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=5.7e-07 Score=81.08 Aligned_cols=204 Identities=10% Similarity=0.109 Sum_probs=127.6
Q ss_pred eEEEEEE----cCcEEEEEecCceEEEEeCCCCCce------------------------------------E----EEe
Q 011924 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVS------------------------------------F----CSR 226 (475)
Q Consensus 191 ~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~------------------------------------~----~~~ 226 (475)
.|..+.| .-..++..+.+.+|++|.+...... . |..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 5777777 2234555568999999988643100 0 001
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
....|.-.++++.+ +.+... ++++ .|-.|.+|+++.......+-...|-+ -.....
T Consensus 167 yaNaH~yhiNSiS~--NsD~et-~lSa-DdLrINLWnl~i~D~sFnIVDiKP~n--------------------meeLte 222 (460)
T COG5170 167 YANAHPYHINSISF--NSDKET-LLSA-DDLRINLWNLEIIDGSFNIVDIKPHN--------------------MEELTE 222 (460)
T ss_pred ccccceeEeeeeee--cCchhe-eeec-cceeeeeccccccCCceEEEeccCcc--------------------HHHHHH
Confidence 11345556777777 666554 5554 78889999876422111111111100 000001
Q ss_pred eeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceE------EE----------eecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 307 CLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTI------AS----------LCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 307 ~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~------~~----------l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
.|++..|+| ....+.-.+..|.|++-|++..... .. +.+-...|..+.|+|+|+++++-.. -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-l 301 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-L 301 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-c
Confidence 223778999 4566777788999999999843211 11 1122356788999999999988755 5
Q ss_pred eEEEEECCCCCceEEEEecCC------------Cce---EEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 370 TCRIWDLRNLSESVAVLKGNL------------GAI---RSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~------------~~v---~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
+|+|||++....|+.++.-|. .+| ..+.||-|.+.+.+|+..+..-||-+
T Consensus 302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 899999998888998886542 233 35788988899999988777777653
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.3e-06 Score=84.68 Aligned_cols=182 Identities=17% Similarity=0.194 Sum_probs=133.1
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.-+.+.| ||-|.+ |++- ....|.+|--+....++.|.|+. |. -+.|
T Consensus 212 Tetyv~w--SP~GTY-L~t~-Hk~GI~lWGG~~f~r~~RF~Hp~-Vq-----------------------------~idf 257 (698)
T KOG2314|consen 212 TETYVRW--SPKGTY-LVTF-HKQGIALWGGESFDRIQRFYHPG-VQ-----------------------------FIDF 257 (698)
T ss_pred eeeeEEe--cCCceE-EEEE-eccceeeecCccHHHHHhccCCC-ce-----------------------------eeec
Confidence 3467888 999986 7666 55669999888888888888774 55 6789
Q ss_pred CCCCcEEEEEeC-----------CCcEEEEECCCCceEEEeecC--CCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCC
Q 011924 314 SPDGKLLIIVGD-----------NPDGLLVDSMTGKTIASLCGH--LDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 314 sp~g~~l~~~~~-----------dg~i~iwd~~~~~~~~~l~~h--~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~ 379 (475)
||+.++|++-+. ...++|||+++|...+.+... ...++ -..||.|++++|.-..+ +|.||+...
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps- 335 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS- 335 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc-
Confidence 999999998542 257899999999988887652 22233 25899999999987664 699999754
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCC-----CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
-.++..-.-.-..|....|+|.+..||.=... ..+.+-.+.++..++....+.-.-..+-|-.+|.+|.+-.
T Consensus 336 f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 22222222234578899999999999865432 3678888888877766555554445678889999998764
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.62 E-value=2.8e-05 Score=76.75 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=57.8
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
|.+++|+...|+.|..||.|.+||...+... +....-.+..++|||+|..+++|+..|.+.+||+.-
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999999999999999998766433 333455678899999999999999999999999864
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=3.4e-05 Score=71.55 Aligned_cols=197 Identities=19% Similarity=0.174 Sum_probs=132.3
Q ss_pred EEEEEeCCCCCeEEEEEeCCCe-EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC
Q 011924 237 AVEIYGSPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP 315 (475)
Q Consensus 237 ~l~~~~s~~g~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp 315 (475)
.++. +|.....++.+-.-|+ ..+||..+++....+..+..-.|.. +..|||
T Consensus 9 ~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--------------------------Hg~fs~ 60 (305)
T PF07433_consen 9 GVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--------------------------HGVFSP 60 (305)
T ss_pred ceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--------------------------CEEEcC
Confidence 4555 7866555777766664 6789999998887776443333322 668999
Q ss_pred CCcEEEEEe-----CCCcEEEEECC-CCceEEEeecCCCCeEEEEEecCCCEEEEEeC------------------CCeE
Q 011924 316 DGKLLIIVG-----DNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQ------------------DKTC 371 (475)
Q Consensus 316 ~g~~l~~~~-----~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~------------------dg~v 371 (475)
+|++|++.- ..|.|-|||.. +-+.+..+..|.-....+.+.|||+.|+.++- +..+
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 999999873 35789999998 66778888888777788999999988888752 2235
Q ss_pred EEEECCCCCceEEEEe----cCCCceEEEEEccCCCEEEEEcCCC-------eEEEEECCCCeeEEEE-----eccCCCe
Q 011924 372 RIWDLRNLSESVAVLK----GNLGAIRSIRYTSDGRYMATAEPAD-------FVHVYDVKSGYEKEQE-----IDFFGEI 435 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~----~~~~~v~~l~~spdg~~la~~~~dg-------~i~iwd~~~~~~~~~~-----~~~~~~i 435 (475)
...|.++ ++.+.... .|..+|+.+++.++|..++..-..| -|-+++.......... ....+.+
T Consensus 141 ~~ld~~s-G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 141 VYLDARS-GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEEecCC-CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 5556655 56555532 2667899999999998665543322 3555553322111111 1245789
Q ss_pred EEEEEcCCCCeEEEE--------EecCCcceEEEE
Q 011924 436 SGISFSPDTESLFIG--------VWDRTYGSLLEY 462 (475)
Q Consensus 436 ~~l~fspdg~~l~~~--------~~D~~~~~ll~~ 462 (475)
-+|+++++|..++++ .||...+.++..
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 999999999988866 455555554443
No 306
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.59 E-value=5.5e-06 Score=82.04 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=118.1
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCC---CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeee
Q 011924 233 AITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQ 309 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~ 309 (475)
..+..-.| +|++..+....-.. ..+.++++.+++........+.-.
T Consensus 193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~----------------------------- 241 (425)
T COG0823 193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG----------------------------- 241 (425)
T ss_pred cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-----------------------------
Confidence 34445566 88888754443222 358889998887666665444444
Q ss_pred eEEECCCCcEEEEEe-CCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCe--EEEEECCCCCceE
Q 011924 310 HSSQSPDGKLLIIVG-DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESV 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~-~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~--v~iwd~~~~~~~~ 383 (475)
..+|+|+|+.|+.+. .+| .|+++|+.++. +..+..-.+.-..-.|+|+|+.++-.+. .|. |.+++.. +..+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~ 318 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQV 318 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--CCce
Confidence 668999999988775 344 57778887666 3445544444446789999999887764 444 5555654 3434
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCC-Ce--EEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPA-DF--VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
..+....+.-....|+|||++|+..+.. |. |.+.|+.++.. .+............|.|+|+.|...+
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 4454444444488899999999887743 43 77777776654 23333344455667788877776544
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=2e-07 Score=92.85 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=137.4
Q ss_pred CCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeee
Q 011924 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCL 308 (475)
Q Consensus 232 ~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i 308 (475)
.+.++++.+ +|.|+- ++.++.-| +.+.|+.. +...+-+. .++.|.
T Consensus 24 ~~~~~a~si--~p~grd-i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~va---------------------------- 71 (1081)
T KOG0309|consen 24 DGGFNAVSI--NPSGRD-IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVA---------------------------- 71 (1081)
T ss_pred cCcccceee--ccccch-hhhhhhcC-eEEEeccCCCCCceeeeccCcchhc----------------------------
Confidence 455778888 999987 66666555 44556543 44444444 356666
Q ss_pred eeEEECCCC--cEEEEEeCCCcEEEEECCC---CceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce
Q 011924 309 QHSSQSPDG--KLLIIVGDNPDGLLVDSMT---GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 309 ~~~~~sp~g--~~l~~~~~dg~i~iwd~~~---~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
.+.|+|.. .+-++........+|++.. ...-..+.||...|+.+.|+| ....+++++-|..|..||++.+..+
T Consensus 72 -d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 -DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred -ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 88888743 3445555666778898763 233456779999999999999 5678999999999999999998888
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcc
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~ 457 (475)
+..+..-..+.+.++|+-....+.+.+....|.+||++.| .++..+.+|...|.++.|..-. ..+.+.+.|+++.
T Consensus 151 ~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 8888776667789999875444445556667999999876 4667777788888888776522 2345556666653
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.3e-05 Score=80.81 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=160.2
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--------------cC
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--------------KD 199 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--------------~~ 199 (475)
++.+--.....+.|.+...|.+-++.+-+....+.+ +++.|+.+.| ..
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~------------------h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIEL------------------HQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhcccc------------------CccceeEEEeccCCCchhccCccccc
Confidence 444422334456677777777777766555444322 1134444444 12
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCC-eEEEEEeCCCeEEEEECCCCeeeeeee-ccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDMGKYQLSKHFR-FPW 277 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 277 (475)
-+|+++.-.|.|.+||+...... ..+.++..++..++|++..+.. .+|++-....+|.+|+..+|+.+.... ...
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 36778888999999998765544 4566788889999998777665 456666677899999999999887776 444
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-------CCceEEEeecCCC-
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLD- 348 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-------~~~~~~~l~~h~~- 348 (475)
.+. |+.+.| +.+.+.+.+..|.+.+.+.- .|+..+.-..|.+
T Consensus 157 iLs-----------------------------~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 157 ILS-----------------------------CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred cee-----------------------------eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 555 788888 88888888888888777653 1233332222222
Q ss_pred ------------------------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-
Q 011924 349 ------------------------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR- 403 (475)
Q Consensus 349 ------------------------~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~- 403 (475)
+...++|+|.-+.++-......+.|+|++- ..++....-..+.+.-+.+-|+++
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCc
Confidence 112357788555444455567799999976 677777776677777788878764
Q ss_pred -EEEEEcCCCeEEEEECCC
Q 011924 404 -YMATAEPADFVHVYDVKS 421 (475)
Q Consensus 404 -~la~~~~dg~i~iwd~~~ 421 (475)
.|.+.-.||.+.||-.+.
T Consensus 287 d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEecCCeEEEEEeec
Confidence 788999999999997654
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=0.00013 Score=65.77 Aligned_cols=243 Identities=14% Similarity=0.134 Sum_probs=126.5
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
++.+..+..|....+..|-+=++..+=.+.+-.. -.|..++ .+-.-++| ++.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc---qVpkD~~----------PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKC---QVPKDPN----------PQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEE---ecCCCCC----------chheEEEECCCCcEEEEEcCCCeEEE
Confidence 3445556666667777766655443322222111 1122222 23556667 9999999999999999
Q ss_pred EeCCCCCceEEEe----eecCCCCceeEEEEEeCCC-C--CeEEEEEeCCCeEEEEECC-----CCeeeeeee----ccc
Q 011924 214 KHLDRPGVSFCSR----TTYDDNAITNAVEIYGSPS-G--AVHFTASNNDCGVRDFDMG-----KYQLSKHFR----FPW 277 (475)
Q Consensus 214 w~~~~~~~~~~~~----~~~~~~~~v~~l~~~~s~~-g--~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~----~~~ 277 (475)
+|+.... .+... ....-...|..+.|..... . ...|++-+..|.++-|-+. ..+....|. ++.
T Consensus 70 fdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 70 FDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred Eecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 9987533 21111 1112234455555531111 1 1235555678888777652 233444444 366
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE-EEEECC-CCce-EEEeecCCCCeEEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG-LLVDSM-TGKT-IASLCGHLDFSFASA 354 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i-~iwd~~-~~~~-~~~l~~h~~~v~~~~ 354 (475)
.|+ ++.++|..++|++||....= ..+... .|-. .+.+.+..... .+.
T Consensus 149 Gi~-----------------------------~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-~v~ 198 (282)
T PF15492_consen 149 GIN-----------------------------SAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-QVT 198 (282)
T ss_pred cee-----------------------------EEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-Ecc
Confidence 777 99999999999988743220 000000 0111 11111111110 010
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+-+...-..... -.+|.+-+ .+...........|..+..||||..||+...+|.|.+|++.+-.....
T Consensus 199 -~~~~~~~~~~~~---~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 199 -SSEDDITASSKR---RGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred -ccCccccccccc---cceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 111111111111 22333321 111111122456899999999999999999999999999988655443
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=3.8e-05 Score=78.51 Aligned_cols=207 Identities=14% Similarity=0.061 Sum_probs=129.1
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCC-CCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEEC
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD-NAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDM 264 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~ 264 (475)
.|+|++..+..+|.|+.+|.|.+.+-.- .. ..-+..+ .++|..+. .-++..+|++-+.|+ .|++|++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~-~~~fqa~~~siv~~L~---~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QL-IRGFQAYEQSIVQFLY---ILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---ee-eehheecchhhhhHhh---cccCceEEEEEeecCCCCceEEEEecc
Confidence 6788888899999999999998776321 11 1112222 22344443 345544566655554 5899998
Q ss_pred CCC------eee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 265 GKY------QLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 265 ~~~------~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
+.- +++ +.+.+..|.+-+ .+.+++++.+-+.+|+|-.+|.|..+.-.
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~------------------------p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPS------------------------PASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCC------------------------cceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 652 223 222222221111 11288999999999999999999988532
Q ss_pred ----CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 336 ----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 336 ----~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
.|....-...-..+|+.+++..++..++-+..-..|.+|.+.+.......+..+...+.|..|++....+++|+..
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence 1222222223457899999998887744444456799999975332355577788889999998865545555544
Q ss_pred CeEEEEECCCCeeEEEEe
Q 011924 412 DFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~ 429 (475)
.|.+|+........++.
T Consensus 236 -~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 236 -FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred -eEEEEcCCCcceeeeec
Confidence 59999976544433443
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=3.7e-07 Score=57.79 Aligned_cols=38 Identities=26% Similarity=0.614 Sum_probs=36.3
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
+++.++.+|.+.|++++|+|++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=8.3e-07 Score=78.20 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=58.9
Q ss_pred eEEECC-CCcEEEEEeCCCcEEEEECCCCc-eEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC
Q 011924 310 HSSQSP-DGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~ 377 (475)
+++-+| +..++++|+.+|.+-+||.+... ++..++.|+..++.+-||| ++..|.+++.||.+--||..
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 888888 56677788899999999999764 3455678999999999999 88899999999999999985
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.48 E-value=9.7e-05 Score=73.52 Aligned_cols=261 Identities=16% Similarity=0.099 Sum_probs=145.8
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc
Q 011924 143 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 143 ~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
..||+. .++.++-++..+++..-..+..+.+ ..+-.+.+..++.+..+|.|..+|..+.+.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 455554 3467777887777653332222110 111122456677788899999999988776
Q ss_pred eEEEeeecCCC--CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccc
Q 011924 222 SFCSRTTYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTE 299 (475)
Q Consensus 222 ~~~~~~~~~~~--~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~ 299 (475)
........... .......+ . ++ . ++.++.++.+..+|..+++.+..+....+....... ++.
T Consensus 183 ~W~~~~~~~~~~~~~~~sP~v--~-~~-~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~------~~~----- 246 (394)
T PRK11138 183 KWTVNLDVPSLTLRGESAPAT--A-FG-G-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEID------RLV----- 246 (394)
T ss_pred eeeecCCCCcccccCCCCCEE--E-CC-E-EEEEcCCCEEEEEEccCChhhheeccccCCCccchh------ccc-----
Confidence 55433211000 00011111 1 23 3 555668899999999988876554321110000000 000
Q ss_pred eEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 300 KVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 300 ~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+..+| .+..+++++.++.+..+|+.+|+.+....- .....+. ..+..++.++.++.+..+|..
T Consensus 247 ----------~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 247 ----------DVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred ----------ccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECC
Confidence 111223 345677777889999999999987765431 1111122 246678888889999999997
Q ss_pred CCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EEEEEcCCCCeEEEEEecCC
Q 011924 378 NLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 378 ~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~fspdg~~l~~~~~D~~ 455 (475)
+ ++.+-.... ......+... .+..|+.++.+|.|+++|..+|+.+.+.......+ ....+ .+..|++++.||.
T Consensus 313 t-G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~ 387 (394)
T PRK11138 313 G-GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT 387 (394)
T ss_pred C-CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce
Confidence 6 443222111 1111222222 24577888999999999999998877665433322 22233 2458889998875
Q ss_pred c
Q 011924 456 Y 456 (475)
Q Consensus 456 ~ 456 (475)
+
T Consensus 388 l 388 (394)
T PRK11138 388 V 388 (394)
T ss_pred E
Confidence 4
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=1.6e-05 Score=80.40 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=112.4
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEee---eeeeEE----
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL---CLQHSS---- 312 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~---~i~~~~---- 312 (475)
+|+|+.+....-..+.+.+.|.++.+....+. .+..+.+++++..+... .+|.+.+..+..+. .-..+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvT-syNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFST-CYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEe-ccCcccCcceeeeccccCceEEEEchH
Confidence 55676544455556778888988877776665 34456677777666432 22333222221111 001223
Q ss_pred ----ECCCCcEEEEEeCCCcEEEEECCC----C-ceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCc-
Q 011924 313 ----QSPDGKLLIIVGDNPDGLLVDSMT----G-KTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE- 381 (475)
Q Consensus 313 ----~sp~g~~l~~~~~dg~i~iwd~~~----~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~- 381 (475)
+.++|++..++ ++.|.++|.++ + +.+..+. -......++++|||+++++++. +.+|.|.|+.+...
T Consensus 280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 34567766653 56799999988 3 4444444 4556788999999999888776 88999999976332
Q ss_pred ----------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 382 ----------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 382 ----------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+....-..++ ...+|.++|+...+.--|..|..||+.+
T Consensus 357 ~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333333344 4788999998888888899999999876
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=4.4e-08 Score=96.20 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=133.6
Q ss_pred eEEEEEE----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE----eCCCeEEEE
Q 011924 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDF 262 (475)
Q Consensus 191 ~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~----s~dg~v~iw 262 (475)
.+.|+++ +..++++|..+|.|.+-.+..+... ...++..+....++++| ++-...+|++| -+|..+.||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceeccccccccccccc--ccccHHHHHhhhhhhcccCCccce
Confidence 3556666 4467889999999999888765433 23566778889999999 66544446666 356679999
Q ss_pred ECCCC--eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ce
Q 011924 263 DMGKY--QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KT 339 (475)
Q Consensus 263 d~~~~--~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~ 339 (475)
|+.++ .+.... .|+. + ......+++|-.+.+++.+|.....+.++|++.. ..
T Consensus 135 di~s~ltvPke~~------~fs~-~------------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~ 189 (783)
T KOG1008|consen 135 DINSLLTVPKESP------LFSS-S------------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS 189 (783)
T ss_pred ecccccCCCcccc------cccc-c------------------cccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence 99775 221111 1111 0 0111117788889999999999999999999832 22
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEE-CCCCCceEEEEecCCC----ceEEEEEccCCC-EEEEEcC-C
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWD-LRNLSESVAVLKGNLG----AIRSIRYTSDGR-YMATAEP-A 411 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd-~~~~~~~~~~~~~~~~----~v~~l~~spdg~-~la~~~~-d 411 (475)
...+ .+..+..+...| .++++++-+ ||.|.+|| .++...++..+..... .+..++|+|-.. .|++... .
T Consensus 190 ~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 190 VSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred hhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence 2222 234566688889 888888876 89999999 6665555555544333 488999999442 4455444 4
Q ss_pred CeEEEEECC
Q 011924 412 DFVHVYDVK 420 (475)
Q Consensus 412 g~i~iwd~~ 420 (475)
++|+.+|+.
T Consensus 267 ~tIrlydi~ 275 (783)
T KOG1008|consen 267 ITIRLYDIC 275 (783)
T ss_pred ceEEEeccc
Confidence 789999975
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7.5e-06 Score=82.91 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=121.3
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.+++.++ .++ +|+-|+..|.|++++.... ....+.+. +-
T Consensus 41 ~is~~av----~~~-~~~~GtH~g~v~~~~~~~~-~~~~~~~s-----------------------------------~~ 79 (846)
T KOG2066|consen 41 AISCCAV----HDK-FFALGTHRGAVYLTTCQGN-PKTNFDHS-----------------------------------SS 79 (846)
T ss_pred HHHHHHh----hcc-eeeeccccceEEEEecCCc-cccccccc-----------------------------------cc
Confidence 3455555 233 5999999999999987432 22222111 11
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEECCCCCc-eEEEEe
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-----GVTFATGNQDKTCRIWDLRNLSE-SVAVLK 387 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~-----g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~ 387 (475)
..+|.++++|+.||++.|-.+-+++...++. ...++.+++++|+ .+.+++|+..| +.++.-+-.+. ....+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 4589999999999999999998888877776 4568999999996 67899999988 77776432222 122466
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC------eEEEEEcCCCCeEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE------ISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~fspdg~~l~~~ 450 (475)
...|+|.++.|. |.++|-++.+| |+|||+.++..+..+...... ...+.|.++. .|++|
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG 222 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG 222 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe
Confidence 677899999996 78999999888 999999988776655543322 3467787764 44444
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=5.4e-05 Score=76.50 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=160.1
Q ss_pred eeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC--------C-CCeEEEEEeCCCeE
Q 011924 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP--------S-GAVHFTASNNDCGV 259 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~--------~-g~~~l~s~s~dg~v 259 (475)
+.-.++.| .+.+|+.|+ ...|.+-|...-+.. +....|.+.|+.|.|..-| . ...+++++...|.|
T Consensus 16 sN~~A~Dw~~~GLiAygs-hslV~VVDs~s~q~i---qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGS-HSLVSVVDSRSLQLI---QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccceEEEec-CceEEEEehhhhhhh---hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34556777 566666665 456777776654433 5667788999999994211 1 33457777778999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CC-cEEEEEeCCCcEEEEEC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DG-KLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g-~~l~~~~~dg~i~iwd~ 334 (475)
.+||...+..+..+. +..++. .++|-| +. ..|++-.....+.+|+.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~q-----------------------------dl~W~~~rd~Srd~LlaIh~ss~lvLwnt 142 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQ-----------------------------DLCWVPARDDSRDVLLAIHGSSTLVLWNT 142 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchh-----------------------------heeeeeccCcchheeEEecCCcEEEEEEc
Confidence 999998888777776 455666 666654 44 45666667788999999
Q ss_pred CCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC------ceEEEEecCCC----------------
Q 011924 335 MTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS------ESVAVLKGNLG---------------- 391 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~------~~~~~~~~~~~---------------- 391 (475)
.+|..............|+.+.| +.+.+..-+..|.|-+-+.-... +....-..|..
T Consensus 143 dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 143 DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 99999888776666788899999 77777777777877777653211 12222222211
Q ss_pred ---------ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC--CeEEEEEecCCcc
Q 011924 392 ---------AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT--ESLFIGVWDRTYG 457 (475)
Q Consensus 392 ---------~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg--~~l~~~~~D~~~~ 457 (475)
....++|+|.-+.++.......+.|+|++-..++..+....+.+.-+.|-|++ ..|++.-.||.+.
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 01245788877655555566679999998777777766666666666676665 5688888887653
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=6.6e-05 Score=79.60 Aligned_cols=206 Identities=14% Similarity=0.177 Sum_probs=134.2
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
..|.++.| ..+... ++.+...|.|.+-|.++......-.-...|. +++
T Consensus 69 ~~i~s~~f--l~d~~~-i~v~~~~G~iilvd~et~~~eivg~vd~GI~-----------------------------aas 116 (1265)
T KOG1920|consen 69 DEIVSVQF--LADTNS-ICVITALGDIILVDPETLELEIVGNVDNGIS-----------------------------AAS 116 (1265)
T ss_pred cceEEEEE--ecccce-EEEEecCCcEEEEcccccceeeeeeccCceE-----------------------------EEe
Confidence 45677777 556555 5666688888888887755443333455666 999
Q ss_pred ECCCCcEEEEEeCCCcEEEEEC----CCCceE-------------------EEeecCC---------------------C
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDS----MTGKTI-------------------ASLCGHL---------------------D 348 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~----~~~~~~-------------------~~l~~h~---------------------~ 348 (475)
||||+.+++..+..+++.+-.- -..+++ ..+.|.. +
T Consensus 117 wS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 117 WSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred ecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 9999999999988777766432 111111 1222111 1
Q ss_pred CeEEEEEecCCCEEEEEe-----CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFATGN-----QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~ 420 (475)
.=.++.|--||.++|+.. ..+.|+|||-. +..-.+-....+--.+++|-|.|..+|+-. .++.|.+|. +
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-r 273 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-R 273 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-c
Confidence 123588999999999843 23789999975 222222222223335899999999888753 456799998 5
Q ss_pred CCeeEEEEec----cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecceeeecc
Q 011924 421 SGYEKEQEID----FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDS 473 (475)
Q Consensus 421 ~~~~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~~l~~ 473 (475)
+|-....+.- -..++..++|+.++..|++-..+..-..+.-|..+....||.+
T Consensus 274 NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 274 NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 6644333221 2245899999999999998776666655666666777788875
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.37 E-value=0.00053 Score=62.66 Aligned_cols=191 Identities=9% Similarity=0.117 Sum_probs=112.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
+...+-...++.|+| .|+.+.++++....+.|..++. .++.++.+... ...-
T Consensus 15 ~~l~g~~~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E----------------------- 68 (248)
T PF06977_consen 15 KPLPGILDELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE----------------------- 68 (248)
T ss_dssp EE-TT--S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-----------------------
T ss_pred eECCCccCCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-----------------------
Confidence 344455556899999 9988777888888889988887 47888877633 3455
Q ss_pred EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc------eEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 011924 304 CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK------TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCR 372 (475)
Q Consensus 304 ~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~------~~~~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~ 372 (475)
.+++..++.++++.-.++.+.++++.... ....+. .+...+-.++|.|.++.|+.+-.....+
T Consensus 69 ------gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~ 142 (248)
T PF06977_consen 69 ------GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKR 142 (248)
T ss_dssp ------EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEE
T ss_pred ------eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChh
Confidence 78888888777766668899999884221 112222 2344578999999877777777766677
Q ss_pred EEECCC--CCceEEEEe--------cCCCceEEEEEccC-CCEEEEEcCCCeEEEEECCCCeeEEEEeccC---------
Q 011924 373 IWDLRN--LSESVAVLK--------GNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFF--------- 432 (475)
Q Consensus 373 iwd~~~--~~~~~~~~~--------~~~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--------- 432 (475)
||.+.. ....+.... .....+.+++++|. |.+++.......|.++| .+|..+....-..
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS--
T ss_pred hEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCccccc
Confidence 776643 111111111 12345788999995 45666677788999999 6677655544222
Q ss_pred CCeEEEEEcCCCCeEEE
Q 011924 433 GEISGISFSPDTESLFI 449 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~ 449 (475)
...-+|+|.++|+..++
T Consensus 222 ~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -SEEEEEE-TT--EEEE
T ss_pred CCccEEEECCCCCEEEE
Confidence 35789999999965544
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00014 Score=77.21 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=131.2
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.++.+ +.+-++.+...|.|.+-|..+.... ....-...|.+.+| ||++.. ++..+..+++.+-.- ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aasw--S~Dee~-l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASW--SPDEEL-LALITGRQTLLFMTK-DF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEee--cCCCcE-EEEEeCCcEEEEEec-cc
Confidence 47889988 8888888889999999876654433 22223456888999 999997 666667777665432 22
Q ss_pred eeeeeee-------ccccEE---------eccCCceEEEE-EEeecccceEEEEeeeeeeEEECCCCcEEEEEe----CC
Q 011924 268 QLSKHFR-------FPWPVN---------VSSSYCIILLC-RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----DN 326 (475)
Q Consensus 268 ~~~~~~~-------~~~~v~---------~s~~~~~l~~~-~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----~d 326 (475)
.++...+ ....++ |.......+.- .+-....-..+.....-..++|.-||.++|+.. .+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 2111110 011111 22111111000 000000000000000112689999999999842 23
Q ss_pred -CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCC--CceEEEEecCCCceEEEEEcc
Q 011924 327 -PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNL--SESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 327 -g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~sp 400 (475)
..|++||.. |.+-..-..-.+.-.+++|-|.|.++|+-. .|+.|.++.-... +.-...+......|..++|+.
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999976 654333333344456799999999999864 3557888875321 111222233344589999999
Q ss_pred CCCEEEE---EcCCCeEEEEECCCC
Q 011924 401 DGRYMAT---AEPADFVHVYDVKSG 422 (475)
Q Consensus 401 dg~~la~---~~~dg~i~iwd~~~~ 422 (475)
++..||+ ......|++|-+.+-
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCe
Confidence 9999998 445556999998764
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=3.5e-06 Score=77.21 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=111.5
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-----eeeeeeeccc
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-----QLSKHFRFPW 277 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~ 277 (475)
++.|.+-++-+-++.++-.. .+ ..++.|-++.| ...++ ++..|...|.|..+|++.+ .+...+-|+.
T Consensus 228 fs~G~sqqv~L~nvetg~~q----sf-~sksDVfAlQf--~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ----SF-QSKSDVFALQF--AGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS 299 (425)
T ss_pred ecccccceeEEEEeeccccc----cc-ccchhHHHHHh--cccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence 44445556767777654322 11 25567888888 66565 5888999999999999763 4556666888
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCce---EEEeecCCCCeEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFAS 353 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~---~~~l~~h~~~v~~~ 353 (475)
.|+ ++..-. ++..|++.+-+|+|.+||++.-++ +++++||.....-+
T Consensus 300 svt-----------------------------slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 300 SVT-----------------------------SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred chh-----------------------------hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 888 777666 788899999999999999997666 88999987544333
Q ss_pred --EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 354 --AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 354 --~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
-.+|....++++++|-..|||.++. +..+.+++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 3456677888899999999999987 77777776543
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.0006 Score=66.71 Aligned_cols=251 Identities=17% Similarity=0.122 Sum_probs=138.3
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC----------------CceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN----------------AITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
.++.+|+.++... ++.|.++++...... ..+..+.. +.-.++.| ||+|+.++...-++.
T Consensus 49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~~d~~ 123 (353)
T PF00930_consen 49 KWSPDGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLRFDER 123 (353)
T ss_dssp EE-SSSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEEEE-T
T ss_pred eeecCCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEEECCc
Confidence 4444888888774 678999887655222 12222211 12245666 999999777777777
Q ss_pred eEEEEECCC----Ce---eeeeeeccccEEeccCCceEEEEEEeecccceEEEE--e-------eeeeeEEECCCCcEEE
Q 011924 258 GVRDFDMGK----YQ---LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIIC--L-------LCLQHSSQSPDGKLLI 321 (475)
Q Consensus 258 ~v~iwd~~~----~~---~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~--~-------~~i~~~~~sp~g~~l~ 321 (475)
.|+.+.+.. .. ....++.+. .........+.++++.+++.... . .-+..+.|.++++.|+
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPK----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--B----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCC----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 777665422 11 222222211 01111345677888888775322 1 1467899999998444
Q ss_pred EE--eCC---CcEEEEECCCCceEEEeec-CCCCe---EEEEEe-cCCC-EEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 322 IV--GDN---PDGLLVDSMTGKTIASLCG-HLDFS---FASAWH-PNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 322 ~~--~~d---g~i~iwd~~~~~~~~~l~~-h~~~v---~~~~~s-p~g~-~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
+. .++ ..+.++|..++.....+.. ...+| ....|. +++. ++.....+|--+||-+...+.....+....
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 43 222 3466788887765433332 22222 355555 6554 444555677655555544355566777666
Q ss_pred CceEE-EEEccCCCEEE-EEcCC----CeEEEEECC-CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 391 GAIRS-IRYTSDGRYMA-TAEPA----DFVHVYDVK-SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 391 ~~v~~-l~~spdg~~la-~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
-.|.. +.++++++.|+ +|..+ ..|...++. .+ .+..+....+.-..+.|||+|++++......
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-EPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-EEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-CeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 67755 77888877554 44442 256666767 44 4445544444446999999999999876543
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00044 Score=70.16 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCeEEEEECCC----CCceEEEEecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCee--------
Q 011924 358 NGVTFATGNQDKTCRIWDLRN----LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYE-------- 424 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~----~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~-------- 424 (475)
+|++... .+++|.+.|.++ ....+..+... .....++++|||+++++++. +++|.|+|+.+...
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4444443 246788999875 23445555433 35679999999998887665 78999999987542
Q ss_pred ----EEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 425 ----KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 425 ----~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..++. ..-.....+|+++|....+---|..+
T Consensus 364 ~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 364 RDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred cceEEEeec-cCCCcceEEECCCCCEEEeEeeccee
Confidence 22222 23345678899998755555445433
No 324
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00042 Score=68.38 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=133.2
Q ss_pred eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC
Q 011924 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP 315 (475)
Q Consensus 236 ~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp 315 (475)
..+++ ++.+...++....+..|.+.|..+.+............ .++++|
T Consensus 77 ~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-----------------------------~~~~~~ 125 (381)
T COG3391 77 AGVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-----------------------------GLAVDP 125 (381)
T ss_pred cceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-----------------------------eEEECC
Confidence 45666 88888767777778999999987777766665443444 789999
Q ss_pred CCcEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEE-----EE
Q 011924 316 DGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA-----VL 386 (475)
Q Consensus 316 ~g~~l~~~~~---dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~-----~~ 386 (475)
+++.+.++.. ++.+.+.|..+++.+.....-..+ ..++++|+|+.++... .+++|.+.|... ....+ ..
T Consensus 126 ~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~ 203 (381)
T COG3391 126 DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLV 203 (381)
T ss_pred CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceecccccccc
Confidence 9988877755 688999999999888875543334 8899999999777665 688999999754 33222 11
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCC-CeEEEEEcCCCCeEEEEEe
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGVW 452 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~i~~l~fspdg~~l~~~~~ 452 (475)
.. ......++++|+|.++...... +.+.+.|..++........... ....+.++|+|.++.+...
T Consensus 204 ~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 204 GV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred cc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 11 1234588999999977666544 5899999998876665332222 5778999999999988733
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.24 E-value=0.0012 Score=65.63 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=116.4
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
....+..++.++.+|.+..+|..+.+......... .......+ . ++ . ++.++.++.|..+|.++++.+..+.
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v--~-~~-~-v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV--S-DG-L-VLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE--E-CC-E-EEEECCCCEEEEEEccCCCEeeeec
Confidence 34467778888899999999998777655333211 11111122 1 33 3 5566788999999999999887776
Q ss_pred ccccEE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC-----
Q 011924 275 FPWPVN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD----- 348 (475)
Q Consensus 275 ~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~----- 348 (475)
...+.. ..... ...+ .+..+++++.++.+..+|..+|+.+........
T Consensus 188 ~~~~~~~~~~~~------------------------sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 188 LDVPSLTLRGES------------------------APAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred CCCCcccccCCC------------------------CCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 432211 00000 1111 123566677888999999999987665431110
Q ss_pred --CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 349 --FSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 349 --~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
....+.-+| .+..++.++.++.+..+|..+ ++.+-... .+....+.. .+..|+.++.+|.|..+|.++|+.
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 011122233 345677777899999999977 44332221 111222222 456777888899999999999876
Q ss_pred EEE
Q 011924 425 KEQ 427 (475)
Q Consensus 425 ~~~ 427 (475)
+-.
T Consensus 317 ~W~ 319 (394)
T PRK11138 317 LWS 319 (394)
T ss_pred EEc
Confidence 543
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.1e-05 Score=76.39 Aligned_cols=194 Identities=16% Similarity=0.077 Sum_probs=133.0
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
|...|+.+.. + -..++++++.||.++.|.-.. -+.+.++. |...+.
T Consensus 8 hrd~i~hv~~--t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~-------------------------- 57 (558)
T KOG0882|consen 8 HRDVITHVFP--T--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVIL-------------------------- 57 (558)
T ss_pred ccceeeeEee--e--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHH--------------------------
Confidence 5566666644 2 233699999999999997543 23344444 556666
Q ss_pred eeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEeecCCCCeEEEEEec-CC---CEEEE-EeCCCeEEEEECCCCC
Q 011924 307 CLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NG---VTFAT-GNQDKTCRIWDLRNLS 380 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g---~~l~t-~s~dg~v~iwd~~~~~ 380 (475)
+++.+-+|.++.+++. |..++++|+.+-..+..++..- ....+.|.- .| ..+|. .-.++.+.|+|-+...
T Consensus 58 ---sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~ 133 (558)
T KOG0882|consen 58 ---SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF 133 (558)
T ss_pred ---hhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence 8889999999999877 9999999988665544333211 122233322 23 13333 3457899999987655
Q ss_pred ce-EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC------Cee---------EEEEeccCCCeEEEEEcCCC
Q 011924 381 ES-VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS------GYE---------KEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 381 ~~-~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~------~~~---------~~~~~~~~~~i~~l~fspdg 444 (475)
.+ ...-.-|..+|..+.+.|-+..+++....|.|.-|.... +.. +..+....+...++.|+|+|
T Consensus 134 ~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 134 CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence 33 344445889999999999999999988899999999762 100 11112234678999999999
Q ss_pred CeEEEEEecCCcce
Q 011924 445 ESLFIGVWDRTYGS 458 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ 458 (475)
..+..-..|..++.
T Consensus 214 ~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 214 AQISTLNPDRKVRG 227 (558)
T ss_pred CcccccCcccEEEE
Confidence 99998888877653
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.18 E-value=0.00092 Score=64.50 Aligned_cols=224 Identities=10% Similarity=0.080 Sum_probs=121.4
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC----CeEEEEEeC----------CCeEEEEECCCC-----ee-
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNN----------DCGVRDFDMGKY-----QL- 269 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g----~~~l~s~s~----------dg~v~iwd~~~~-----~~- 269 (475)
.|++.|..+..... .........+.+++...-+++ ..+++.|+. .|.|.++++... ++
T Consensus 3 ~i~l~d~~~~~~~~--~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLD--SFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEE--EEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEE--EEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 46666655444332 222223334555544332321 344665532 288999999773 22
Q ss_pred -eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 270 -SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 -~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
+.....+++|. +++-- ++. |+++ ..+.|.+|++...+.+.....+..
T Consensus 81 ~i~~~~~~g~V~-----------------------------ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~ 128 (321)
T PF03178_consen 81 LIHSTEVKGPVT-----------------------------AICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEESS-EE-----------------------------EEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-B
T ss_pred EEEEEeecCcce-----------------------------Ehhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecc
Confidence 23333567777 55533 455 4444 347899999987772222222323
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCC-----
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS----- 421 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~----- 421 (475)
++..++....+++++.|..-..+.++..+.....+..+.. ....++++.|-++++.++++..+|.|.++....
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence 2333344445679999988777887755432332333332 334678888887778999999999999998652
Q ss_pred --Ce-eEEEE-e-ccCCCeEEE---EEcCC--CC------eEEEEEecCCcceEEEEEeecc
Q 011924 422 --GY-EKEQE-I-DFFGEISGI---SFSPD--TE------SLFIGVWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 422 --~~-~~~~~-~-~~~~~i~~l---~fspd--g~------~l~~~~~D~~~~~ll~~~~~~~ 467 (475)
+. .+... . .....|+++ ++.|. +. .++.++.+|.++.++.+.....
T Consensus 209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~ 270 (321)
T PF03178_consen 209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIPFLSEEE 270 (321)
T ss_dssp TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE-E-HHH
T ss_pred ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEecCCHHH
Confidence 11 22211 1 233557777 55552 22 4888999999998888544433
No 328
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.0016 Score=61.77 Aligned_cols=217 Identities=18% Similarity=0.186 Sum_probs=130.8
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccc
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPW 277 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~ 277 (475)
++.+--..+.|.-|+....... .+.......+...+ ...+ +|+++ +..+.+++.+++..+..+. ...
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~--d~~g--~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI--DAGG--RLIAC--EHGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee--cCCC--eEEEE--ccccEEEeccCCceeEEeccccCCC
Confidence 4556667788888877644322 11122222222333 4444 25554 2346667776555533222 111
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------CCcEEEEECC-CCceEEEeecCC
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------NPDGLLVDSM-TGKTIASLCGHL 347 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------dg~i~iwd~~-~~~~~~~l~~h~ 347 (475)
+.+ .++ ...+.|+|.+.+.... ...-.||.+. .+..+..+..+-
T Consensus 109 ~~~-r~N-------------------------D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 109 PLN-RPN-------------------------DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred CcC-CCC-------------------------ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 111 111 6678888877665433 1112344444 577777777666
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCeEEEEECCC-C----Cc-eEEEEecCCCceEEEEEccCCCEEEEEcCCC-eEEEEEC
Q 011924 348 DFSFASAWHPNGVTFATGNQ-DKTCRIWDLRN-L----SE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV 419 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~-~----~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg-~i~iwd~ 419 (475)
...+.++||||++.|+.+-. .+.|.-|++.. . .+ ....+....+..-.++...+|.+-+++..+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 77788999999988887755 46777777641 1 11 1222233345566788888998776665554 8999997
Q ss_pred CCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEecC
Q 011924 420 KSGYEKEQEIDFFGEISGISF-SPDTESLFIGVWDR 454 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~D~ 454 (475)
. |+++..+......+++++| .|+.+.|++.+...
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 7 8888888877678888888 45678888776654
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=4.8e-05 Score=75.40 Aligned_cols=140 Identities=24% Similarity=0.287 Sum_probs=95.5
Q ss_pred eEEECCCCcEEEEEe---CC-CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe--EEEEECCCCCce
Q 011924 310 HSSQSPDGKLLIIVG---DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKT--CRIWDLRNLSES 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~---~d-g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~--v~iwd~~~~~~~ 382 (475)
..+|+|++..++... .. ..++++++.+++....+. ..+.-...+|+|||+.|+-+ ..||. |.+.|+.. +.
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--~~ 273 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--KN 273 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--Cc
Confidence 568999998876652 23 469999999887655544 33445567899999887755 45665 55566654 33
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
...+....+.-+.-.|+|||+.|+..+.. | .|.++++..+.. ..+....+.-....|||||++|+..+..
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 44465555555578899999998877653 3 577778776554 3444334434488899999999987743
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.16 E-value=0.00015 Score=76.09 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=96.1
Q ss_pred ccceeeecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE------
Q 011924 124 VKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV------ 197 (475)
Q Consensus 124 ~~~~~~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------ 197 (475)
++....|-+-++++.-... ...+|+..+...|+...-+++...+ +|..++.
T Consensus 483 P~k~mL~~~d~~mil~~~~------~~~~ly~mDLe~GKVV~eW~~~~~~-----------------~v~~~~p~~K~aq 539 (794)
T PF08553_consen 483 PKKAMLHDQDRNMILLDPN------NPNKLYKMDLERGKVVEEWKVHDDI-----------------PVVDIAPDSKFAQ 539 (794)
T ss_pred cchhhhhccccceEeecCC------CCCceEEEecCCCcEEEEeecCCCc-----------------ceeEecccccccc
Confidence 4445567777777654332 2355666676666666666654321 1333333
Q ss_pred -cCcEEEEEecCceEEEEeCCCCCceEEE--eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 -KDKLLVAGGFQGELICKHLDRPGVSFCS--RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 -~~~~lvsg~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
...-.+.|-.+..+..||.+..+..... ......+...+|++- +.+| .+|+||.+|.||+||--..+....++
T Consensus 540 lt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aT--t~~G--~iavgs~~G~IRLyd~~g~~AKT~lp 615 (794)
T PF08553_consen 540 LTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFAT--TEDG--YIAVGSNKGDIRLYDRLGKRAKTALP 615 (794)
T ss_pred cCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEe--cCCc--eEEEEeCCCcEEeecccchhhhhcCC
Confidence 2334566777888999998865522111 111234445677766 7777 49999999999999954333334444
Q ss_pred -ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 275 -FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 275 -~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
...||. ++.++.||+++++.+. ..+.|++.
T Consensus 616 ~lG~pI~-----------------------------~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 616 GLGDPII-----------------------------GIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCCCee-----------------------------EEEecCCCcEEEEeec-ceEEEEEE
Confidence 467888 9999999999987654 46777775
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00043 Score=71.13 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=114.9
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc-EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP-VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL 320 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l 320 (475)
++++.. ++.|+.+|.|.+.+- ..+.++.|. ++.. +. .+-.-.+..+|
T Consensus 32 ~s~~~~-vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~-----------------------------~L~~~~~~~~L 80 (933)
T KOG2114|consen 32 SSSTGS-VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQ-----------------------------FLYILNKQNFL 80 (933)
T ss_pred cCCCce-EEEeeccccEEEecc-cceeeehheecchhhhh-----------------------------HhhcccCceEE
Confidence 666664 999999998877763 234445554 3333 44 33333333566
Q ss_pred EEEeCCC-----cEEEEECCC------CceE--EEeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEC---CCC
Q 011924 321 IIVGDNP-----DGLLVDSMT------GKTI--ASLCG-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDL---RNL 379 (475)
Q Consensus 321 ~~~~~dg-----~i~iwd~~~------~~~~--~~l~~-----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~---~~~ 379 (475)
++.+.|. .++||++.. ..++ +++.+ .+.++.+++.|.+-+.+|+|-.+|.|..+.- |..
T Consensus 81 ~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 81 FSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred EEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 6665543 589999862 2233 22333 2456888999999999999999999998853 221
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEE
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
+...........+|+.+++..+++-++.+..-..|.+|.+....+... +..|...+.|-.|++....+++++
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 222333333457999999999998633333345699999884442333 445667899999998777566654
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0027 Score=62.53 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=124.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCce---------------------------------------E-EEeee
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS---------------------------------------F-CSRTT 228 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~---------------------------------------~-~~~~~ 228 (475)
.|+.+++ ...-|++|...|.|.+|.+..++.. + .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4667777 6678888889999999876432110 0 11222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCL 308 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i 308 (475)
....+.|++++. |.-| +++.|..+|.+.|.|++....+..-.... .. .. ..... .+
T Consensus 83 ~~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~-~~-~~------------~~~~~------~v 138 (395)
T PF08596_consen 83 DAKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE-SF-LS------------KSSSS------YV 138 (395)
T ss_dssp ---S-SEEEEEE---BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-------------SS----------E
T ss_pred eccCCcEeEEec--CCCc--EEEEEecCCcEEEEECCCCeEEeeccccc-cc-cc------------ccccc------Ce
Confidence 334578999988 7666 58999999999999998877765533111 00 00 00000 01
Q ss_pred eeEEE-----CCCC---cEEEEEeCCCcEEEEECC--C-CceE----EEeecCCCCeEEEE-EecC-C------------
Q 011924 309 QHSSQ-----SPDG---KLLIIVGDNPDGLLVDSM--T-GKTI----ASLCGHLDFSFASA-WHPN-G------------ 359 (475)
Q Consensus 309 ~~~~~-----sp~g---~~l~~~~~dg~i~iwd~~--~-~~~~----~~l~~h~~~v~~~~-~sp~-g------------ 359 (475)
+++.| ..|+ -.+++|...|.+.+|.+. . +... .....+.+++..+. ++.+ |
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 13333 3344 578888999999999764 1 2221 12223556666554 3221 0
Q ss_pred -------CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE-----ccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 360 -------VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY-----TSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 360 -------~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-----spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+-++.......+||+..-+ .+..+......-....+.+ ...+..|++-..+|.|++|.+..-+.+..
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 1233334456799999876 3433333322223334445 23567888889999999999999887776
Q ss_pred EeccC----CCeEEEEEcCCCCeEEEE
Q 011924 428 EIDFF----GEISGISFSPDTESLFIG 450 (475)
Q Consensus 428 ~~~~~----~~i~~l~fspdg~~l~~~ 450 (475)
..... ..+....|+++|..++..
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred ccCCCccccccccccEECCCCCEEEEe
Confidence 66432 345667789999876544
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.07 E-value=0.00042 Score=72.83 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeeeeeeecccc--EE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEE
Q 011924 246 GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP--VN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLI 321 (475)
Q Consensus 246 g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~ 321 (475)
.+.+|........|+-.|+++|+.+........ |. +.|+. .++. +....+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~--------------------------K~aqlt~e~tf 546 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDS--------------------------KFAQLTNEQTF 546 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccc--------------------------cccccCCCceE
Confidence 343344445667899999999999998884332 33 21111 1111 123445
Q ss_pred EEeCCCcEEEEECCC-CceEEEeec----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 322 IVGDNPDGLLVDSMT-GKTIASLCG----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 322 ~~~~dg~i~iwd~~~-~~~~~~l~~----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
+|-.+..+..||.|- +..+..-.. ......|++-+.+| +||+|+.+|.||+||- .+.+....+.+-..+|..|
T Consensus 547 lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 547 LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred EEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEE
Confidence 566778899999984 322221122 22345566666565 7999999999999995 3345555666767899999
Q ss_pred EEccCCCEEEEEcCCCeEEEEEC
Q 011924 397 RYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.||++|++.+.. .|.++++
T Consensus 625 Dvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EecCCCcEEEEeecc-eEEEEEE
Confidence 999999999877754 5777775
No 334
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.05 E-value=0.0022 Score=58.03 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=111.6
Q ss_pred eeeecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---c----
Q 011924 127 TILHFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---K---- 198 (475)
Q Consensus 127 ~~~h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~---- 198 (475)
.-.+.|.|.+.|+++...+.++ +.+.|.+++.... .++... |....++. -...|..|.| .
T Consensus 40 kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~----p~~~~~~d-----~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIP----PAMSFPGD-----LSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred CCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcC----cccccCCc-----cccceeeeEeeccccccc
Confidence 3456789999999999888776 5588999986542 222222 22222221 1235666666 1
Q ss_pred -CcEEEEEecCceEEEEeCCC---CC--ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee
Q 011924 199 -DKLLVAGGFQGELICKHLDR---PG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (475)
Q Consensus 199 -~~~lvsg~~dg~i~vw~~~~---~~--~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (475)
...|++-...|.++-+-+.. .+ ..............|+++.+ +|.-+.+++.|.....-..+..
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy--~p~h~LLlVgG~~~~~~~~s~a-------- 177 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY--HPKHRLLLVGGCEQNQDGMSKA-------- 177 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE--cCCCCEEEEeccCCCCCccccc--------
Confidence 22566666888888777632 12 12223333445667899888 8887765555543331111100
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------cEEEEECCCCceEEEeecC
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------DGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------~i~iwd~~~~~~~~~l~~h 346 (475)
....++ .|-+. .=+|-.+.+. ...++ ...+|.+-+.+........
T Consensus 178 --~~~GLt------------aWRiL--------------~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 178 --SSCGLT------------AWRIL--------------SDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred --cccCce------------EEEEc--------------CCCCcEEEcc-ccCccccccccccceeeccceeeeeccccC
Confidence 000111 00000 0111111111 11111 1123333322222222335
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.+.|+.+..||||..||+...+|.|.+|++-+ -+....+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W 267 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSW 267 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhccc
Confidence 78899999999999999999999999999965 3333333
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.015 Score=55.88 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=112.6
Q ss_pred cCcEEEE-EecCceEE--EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 KDKLLVA-GGFQGELI--CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~~lvs-g~~dg~i~--vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+|+.|+. +..+|.-. +.|+.+.... +++.+.........+ +|..+.++. ......|+..|+.+.+....+.
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~---QLTdg~g~~~~g~~~--s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEIT---QLTDGPGDNTFGGFL--SPDDRALYY-VKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEE---E---SS-B-TTT-EE---TTSSEEEE-EETTTEEEEEETTT--EEEEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEE---ECccCCCCCccceEE--ecCCCeEEE-EECCCeEEEEECCcCcEEEEEE
Confidence 6755554 44565544 4455543322 444433222223444 788776444 3356788999999877654444
Q ss_pred ccc----cEEe--ccCCceEE----------------------------EEEEeecccceEEEEee---eeeeEEECC-C
Q 011924 275 FPW----PVNV--SSSYCIIL----------------------------LCRLLNFMTEKVIICLL---CLQHSSQSP-D 316 (475)
Q Consensus 275 ~~~----~v~~--s~~~~~l~----------------------------~~~v~d~~~~~~~~~~~---~i~~~~~sp-~ 316 (475)
.+. ..++ ..++..++ .+...|+.+|+...... .+.++.||| +
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 222 1222 23344442 23344666666544333 567999999 5
Q ss_pred CcEEEEEeC---CC-cEEEEECC-CCceEEEeecCCC--CeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCCceEE
Q 011924 317 GKLLIIVGD---NP-DGLLVDSM-TGKTIASLCGHLD--FSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNLSESVA 384 (475)
Q Consensus 317 g~~l~~~~~---dg-~i~iwd~~-~~~~~~~l~~h~~--~v~~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~~~~~~ 384 (475)
..+|+.|-. +. .-+||-++ .|.....+..+.. .+.-=-|.|+|..|.--+. +..|.-+|..+. ....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~-~~~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG-ERRR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-CceE
Confidence 566666642 11 12455444 3444444443332 2333468999987775432 446777888763 3222
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCC----------------CeEEEEECCCCeeEEEEeccC---------C--CeEE
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPA----------------DFVHVYDVKSGYEKEQEIDFF---------G--EISG 437 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~d----------------g~i~iwd~~~~~~~~~~~~~~---------~--~i~~ 437 (475)
... ..+...+.-++||++++-=+.| -.|++++++++.... +..|. . .=..
T Consensus 279 ~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 279 LME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT---
T ss_pred EEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCC
Confidence 222 1234466668899987653333 157778888765432 22222 1 1246
Q ss_pred EEEcCCCCeEEEEEe
Q 011924 438 ISFSPDTESLFIGVW 452 (475)
Q Consensus 438 l~fspdg~~l~~~~~ 452 (475)
+.|||||++|+-.+.
T Consensus 356 p~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EE-TTSSEEEEEE-
T ss_pred CccCCCCCEEEEECC
Confidence 899999999987664
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=4e-06 Score=85.45 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~ 387 (475)
|++|+...+.|++|+..|.|+++++.+|.......+|...|+-+.-+-+|..+++.+.-. -..+|++.....+.+.+.
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence 999999999999999999999999999999999999999999998888998888776533 478999987777888877
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEE--EEecCCc
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFI--GVWDRTY 456 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~--~~~D~~~ 456 (475)
+. .++.|+..-.+-+.|+......|||++++..+.++.. ....-+...|||+...|+- -.||..+
T Consensus 1186 ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~ 1256 (1516)
T KOG1832|consen 1186 ED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRI 1256 (1516)
T ss_pred cc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeecc
Confidence 54 4788987665556666667799999999877666432 1123366778888776653 1455443
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=1.6e-06 Score=85.50 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=122.6
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee-eee--eccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-KHF--RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~-~~~--~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
.+.|++++...+ +-+++.|..+|.|-+-.++...-. ..+ .+..+.+ +
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct-----------------------------~ 107 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCT-----------------------------S 107 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceeccccccccc-----------------------------c
Confidence 355666633333 346888888999988877543222 222 2556667 9
Q ss_pred EEECC-CCcEEEEEe----CCCcEEEEECCCC--ce--EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC
Q 011924 311 SSQSP-DGKLLIIVG----DNPDGLLVDSMTG--KT--IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 380 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~----~dg~i~iwd~~~~--~~--~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~ 380 (475)
++|++ |.+.||+|- .+..+.|||+.++ .+ ...+.+ ......+++|-.+.+++.+|...+.+.++|+|.
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-- 185 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-- 185 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--
Confidence 99999 777888773 4677999999876 22 222332 334556889998999999999999999999984
Q ss_pred ceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEE-CCCCeeEEEEeccC-----CCeEEEEEcCCC-CeEEEEEe
Q 011924 381 ESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYD-VKSGYEKEQEIDFF-----GEISGISFSPDT-ESLFIGVW 452 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd-~~~~~~~~~~~~~~-----~~i~~l~fspdg-~~l~~~~~ 452 (475)
.+.....-....+..+..+| .+.++++-. ||.|.+|| ..+-+.+.+...+. ..+..++|+|-. ..|++..-
T Consensus 186 s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 186 SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 22222222334567778888 777887665 89999999 33322222222222 348899999953 34455555
Q ss_pred cCCcc
Q 011924 453 DRTYG 457 (475)
Q Consensus 453 D~~~~ 457 (475)
|..+-
T Consensus 265 dS~tI 269 (783)
T KOG1008|consen 265 DSITI 269 (783)
T ss_pred CcceE
Confidence 54433
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5e-05 Score=71.22 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=94.1
Q ss_pred eEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 310 HSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 310 ~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
.++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.- +.++|+.|-..|.|.|||+|.+..++..+.
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 999999665 7888899999999999999888888877 7899999988 457888888999999999998776665555
Q ss_pred cC--CCceEEEE------EccCCCEEEEEcCCCeEEEEECCCC--eeEE-EEeccCCCeEEEEEcCCCCeEEE
Q 011924 388 GN--LGAIRSIR------YTSDGRYMATAEPADFVHVYDVKSG--YEKE-QEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 388 ~~--~~~v~~l~------~spdg~~la~~~~dg~i~iwd~~~~--~~~~-~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
+. ..+|..++ ..+.|-+|+.+..+ +..|++.-. .... ......|...++...+-.+.+++
T Consensus 277 a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 277 ANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred hhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 42 22444433 23445566655543 566765422 1122 22233566666777664455443
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.95 E-value=0.001 Score=65.06 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=103.6
Q ss_pred CCCCCeEEEEE--------eCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 243 SPSGAVHFTAS--------NNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 243 s~~g~~~l~s~--------s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
||+++.+|+.. +..+.+.++|+++++..........+. ...||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~-----------------------------~~~~s 51 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQ-----------------------------DAKWS 51 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBS-----------------------------EEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccc-----------------------------cceee
Confidence 57777655532 234567888888876655444444555 78999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEee--c-------C---------CCCeEEEEEecCCCEEEEEeCCC-------
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLC--G-------H---------LDFSFASAWHPNGVTFATGNQDK------- 369 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~-------h---------~~~v~~~~~sp~g~~l~t~s~dg------- 369 (475)
|+|+.+|.+. ++.|++++..++... .+. | - -+.-.++-|||||++||....|.
T Consensus 52 P~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 52 PDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 9999999885 578999998777443 332 2 0 11235688999999998765321
Q ss_pred -----------------------------eEEEEECCCCCce-EEEE---ecCCCceEEEEEccCCCEEEEEc--CC---
Q 011924 370 -----------------------------TCRIWDLRNLSES-VAVL---KGNLGAIRSIRYTSDGRYMATAE--PA--- 411 (475)
Q Consensus 370 -----------------------------~v~iwd~~~~~~~-~~~~---~~~~~~v~~l~~spdg~~la~~~--~d--- 411 (475)
.+.|+|+...... +... .....-+..+.|+++++.|+... .+
T Consensus 130 ~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~ 209 (353)
T PF00930_consen 130 LPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR 209 (353)
T ss_dssp EEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE
T ss_pred eeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE
Confidence 1333444331111 1111 12234578899999998444332 22
Q ss_pred CeEEEEECCCCeeEEEEec-cCCC---eEEEEEc-CCCCeEEEE-EecCCcceEEEE
Q 011924 412 DFVHVYDVKSGYEKEQEID-FFGE---ISGISFS-PDTESLFIG-VWDRTYGSLLEY 462 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~-~~~~---i~~l~fs-pdg~~l~~~-~~D~~~~~ll~~ 462 (475)
-.+.++|..++........ ..+. -..+.|. +++..++.. ..|| ...|..+
T Consensus 210 ~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G-~~hly~~ 265 (353)
T PF00930_consen 210 LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG-YRHLYLY 265 (353)
T ss_dssp EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS-SEEEEEE
T ss_pred EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC-CcEEEEE
Confidence 2577788877654433322 2232 2356665 666555544 3333 3344333
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.018 Score=56.89 Aligned_cols=209 Identities=18% Similarity=0.163 Sum_probs=138.8
Q ss_pred cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeee
Q 011924 198 KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~ 274 (475)
.+. ..++...++.|.+.+........ ....+. .-..+++ +++++.+.++-. .++++.+.|-.+.+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~--~~~vG~--~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLG--SIPVGL--GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceee--Eeeecc--CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 444 56666667899999966544332 222222 3345667 999988666665 47899999999888887754
Q ss_pred cc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEE-E---eecCCC
Q 011924 275 FP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-S---LCGHLD 348 (475)
Q Consensus 275 ~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~-~---l~~h~~ 348 (475)
.. .+ . .++++|+|+.+.++. .++.+.+.|........ . ...-..
T Consensus 158 vG~~P-~-----------------------------~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 158 VGNTP-T-----------------------------GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT 207 (381)
T ss_pred cCCCc-c-----------------------------eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC
Confidence 32 23 4 789999999777665 78899999976555442 1 111223
Q ss_pred CeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCe
Q 011924 349 FSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGY 423 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~ 423 (475)
....+.++|+|+++...... +++.+.|... +..... ..........+.++|+|+++.++.. .+.+.+.|..+..
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 45678999999988777665 4899999876 443333 2222214567899999999888844 4889999988876
Q ss_pred eEEEEeccC---CCeEEEEEcCC
Q 011924 424 EKEQEIDFF---GEISGISFSPD 443 (475)
Q Consensus 424 ~~~~~~~~~---~~i~~l~fspd 443 (475)
......... +.+..+++.+.
T Consensus 287 v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 287 VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeeecccccccccceeccceee
Confidence 655444322 34556666554
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0098 Score=60.26 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=83.5
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
...+|++..+++|+.|+..|.+++++-..+... .....+..+++..+.+ |++.. ++++|+..|.|.++-+.....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~v--s~~e~-lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSV--SSVEY-LVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhh--cccccCccceEEEEEe--cchhH-hhhhhcCCceEEeehhhccCC
Confidence 467788889999999999999999997654433 2223334556666677 88876 488888999999998765322
Q ss_pred -----eeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 270 -----SKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 270 -----~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
+.... |+..|+ +++|++++..|.+|...|.|.+..+.+
T Consensus 111 ~~~~~~t~~d~~~~~rVT-----------------------------al~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVT-----------------------------ALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEE-----------------------------EEEecccccEEeecCCCceEEEEEech
Confidence 11111 455666 999999999999999999998877765
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.81 E-value=0.04 Score=56.39 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE------------------eCCCeEEEEECCCCC
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG------------------NQDKTCRIWDLRNLS 380 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~------------------s~dg~v~iwd~~~~~ 380 (475)
.+++++.+|.+...|.++|+.+...... ...++.+| ..++.+ ..+|.+.-.|+.+ +
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-G 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC-C
Confidence 5777788999999999999988765421 11123333 222221 1346677777765 4
Q ss_pred ceEEEEecCC--------Cce--EEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EE-EEEcCCCCeEE
Q 011924 381 ESVAVLKGNL--------GAI--RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SG-ISFSPDTESLF 448 (475)
Q Consensus 381 ~~~~~~~~~~--------~~v--~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~-l~fspdg~~l~ 448 (475)
+.+=...... .+. ..+. ..+..|++++.+|.|+.+|.++|+.+-.... .+.+ .. +.|..+| .++
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g-~~y 452 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNG-KQY 452 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCC-EEE
Confidence 3322222110 111 1122 2456888889999999999999998877654 3333 22 2344454 666
Q ss_pred EEEecCC
Q 011924 449 IGVWDRT 455 (475)
Q Consensus 449 ~~~~D~~ 455 (475)
++..++.
T Consensus 453 v~~~~g~ 459 (488)
T cd00216 453 VGVMVGG 459 (488)
T ss_pred EEEEecC
Confidence 6666664
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.015 Score=52.14 Aligned_cols=141 Identities=13% Similarity=0.041 Sum_probs=95.4
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP 278 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (475)
..+++.|+..|.+..-|...+....... .+ ..+.+-++. -|+. ++.|...|.+++.+.++|.....|.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg--~RiE~sa~v---vgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LG--VRIECSAIV---VGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hC--ceeeeeeEE---ECCE-EEEEEccCcEEEEEecchhheeeeeehhh
Confidence 4577788888888888877665443221 11 222232221 2554 88888999999999999988887775555
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP- 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp- 357 (475)
|.. .....+++.++..++.|++.+..|.++..++...+...+...+-+..|
T Consensus 95 vk~----------------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g 146 (354)
T KOG4649|consen 95 VKV----------------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG 146 (354)
T ss_pred hcc----------------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC
Confidence 541 335678999999999999999999999998888775444444556677
Q ss_pred CCCEEEEEeCCCeEEEEEC
Q 011924 358 NGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~ 376 (475)
++. |+.+...|.|.--..
T Consensus 147 ~~s-ly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 147 DGS-LYAAITAGAVLAVTK 164 (354)
T ss_pred Cce-EEEEeccceEEEEcc
Confidence 444 444445555544443
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00016 Score=71.76 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=73.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
-+.|+|.-.++|.+..+|.+.+..+. -+.+.++.-|...++ +++|.|||++||.|-.||+|++-|+.++.........
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s 103 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS 103 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence 78899999999999999999999987 666778876666666 9999999999999999999999999884443332233
Q ss_pred CCCceEEEEEcc
Q 011924 389 NLGAIRSIRYTS 400 (475)
Q Consensus 389 ~~~~v~~l~~sp 400 (475)
....|.++-|+|
T Consensus 104 ~e~~is~~~w~~ 115 (665)
T KOG4640|consen 104 VETDISKGIWDR 115 (665)
T ss_pred cccchheeeccc
Confidence 445777777863
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.74 E-value=0.0035 Score=55.99 Aligned_cols=146 Identities=13% Similarity=-0.007 Sum_probs=100.2
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
.++.+.+++.||..+.+..-|..+|+..........+. +-+.- -|++++.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-----------------------------~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-----------------------------CSAIV-VGDFVVL 68 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-----------------------------eeeEE-ECCEEEE
Confidence 45666678899999999999998888776554433333 22211 4778999
Q ss_pred EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 323 VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
|...|.+++.+..+|.....+..-..--......+++.++..|+.|++....|.++ ..++...+...+.-.+.+..|-.
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~ 147 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGD 147 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCC
Confidence 99999999999999988777764332222345677999999999999999999987 66777666554444455566622
Q ss_pred CEEEEEcCCCeEEEEEC
Q 011924 403 RYMATAEPADFVHVYDV 419 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~ 419 (475)
..|..+...|.|.--..
T Consensus 148 ~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEEEeccceEEEEcc
Confidence 23444444454444443
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.70 E-value=0.055 Score=55.43 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=124.8
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCC--C-CceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCC
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDD--N-AITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKY 267 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~--~-~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~ 267 (475)
..++.++.+|.|+.+|..+.+........... . .......+ . + .. ++.++ .++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~-~-~~-v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--V-K-KL-VIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--E-C-CE-EEEeccccccccCCCCcEEEEEECCCC
Confidence 78888889999999999887766533322110 0 01112222 1 2 22 33432 3678999999999
Q ss_pred eeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------------------
Q 011924 268 QLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------------------ 327 (475)
Q Consensus 268 ~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------------------ 327 (475)
+.+-.+.... +..+...+. ...++....+... ...++.+.+.++++++.++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~g~~vw------~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~ 256 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGP---DRQMWGPGGGTSW------ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD 256 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCC---CcceecCCCCCcc------CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence 9887765321 111000000 0000000000000 0345566667777776554
Q ss_pred cEEEEECCCCceEEEeec--CCCC----eEEEEEe----cCCC---EEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 328 DGLLVDSMTGKTIASLCG--HLDF----SFASAWH----PNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~--h~~~----v~~~~~s----p~g~---~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
.+.-+|+.+|+.+..++. |... .....+. -++. .++.++.+|.+...|.++ ++.+-..... ..
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~ 332 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQ 332 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeEee---cc
Confidence 689999999998877652 2110 0011111 1333 677888899999999987 5654433221 11
Q ss_pred EEEEccCCCEEEEE------------------cCCCeEEEEECCCCeeEEEEeccC--------CCeEEEEEcCCCCeEE
Q 011924 395 SIRYTSDGRYMATA------------------EPADFVHVYDVKSGYEKEQEIDFF--------GEISGISFSPDTESLF 448 (475)
Q Consensus 395 ~l~~spdg~~la~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~l~fspdg~~l~ 448 (475)
.++.+| + .++.+ ..+|.|.-.|+.+|+.+-+..... .+...-...-.+..|+
T Consensus 333 ~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~ 410 (488)
T cd00216 333 PMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVF 410 (488)
T ss_pred ccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEE
Confidence 233444 2 23222 246789999999998766554320 1111101112456777
Q ss_pred EEEecCCc
Q 011924 449 IGVWDRTY 456 (475)
Q Consensus 449 ~~~~D~~~ 456 (475)
+++.|+.+
T Consensus 411 ~g~~dG~l 418 (488)
T cd00216 411 AGAADGYF 418 (488)
T ss_pred EECCCCeE
Confidence 77666543
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00046 Score=69.50 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=96.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL- 386 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~- 386 (475)
-.+++..+++++.|+.-|.+++|+-..++. ..++ +-.+.+..++.|++..++|.|++.|.|.++-+.+...+-..+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 446677899999999999999999665543 3333 344556677889999999999999999999886533222111
Q ss_pred ----ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC----eeEEEEeccCCCeEEEEEc
Q 011924 387 ----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 387 ----~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~fs 441 (475)
+.|...|++++|++++..|++|...|.|..-.+.+. .....+....++|..+...
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 125678999999999999999999999999887761 1222333455677777665
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.68 E-value=0.059 Score=53.97 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=110.7
Q ss_pred EEEEEeCCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 237 AVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 237 ~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
...+ ||+|++++++-+..| .|+++|+++++.+...-...... .+.
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-----------------------------~~~ 176 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-----------------------------SVS 176 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-----------------------------EEE
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-----------------------------eEE
Confidence 3445 999998766655554 59999999997654321111111 478
Q ss_pred ECCCCcEEEEEeCC-----------CcEEEEECCCCce--EEEeecCCCC--eEEEEEecCCCEEEEEeC---C-CeEEE
Q 011924 313 QSPDGKLLIIVGDN-----------PDGLLVDSMTGKT--IASLCGHLDF--SFASAWHPNGVTFATGNQ---D-KTCRI 373 (475)
Q Consensus 313 ~sp~g~~l~~~~~d-----------g~i~iwd~~~~~~--~~~l~~h~~~--v~~~~~sp~g~~l~t~s~---d-g~v~i 373 (475)
|.++++.|+....+ ..|+.|.+.++.. ...+...... ...+..++++++|+..+. + ..+.+
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 99998887766432 2377888776643 2445443322 567889999998875433 2 34778
Q ss_pred EECCCC---CceEEEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCee---EEEEeccCCCeEEEEEcCCC
Q 011924 374 WDLRNL---SESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYE---KEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 374 wd~~~~---~~~~~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~fspdg 444 (475)
.|+... ......+......+....-+..+.+++... .++.|.-.++.+... ...+..+...+.-..++..+
T Consensus 257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 888652 223444444333443333333444444432 346787788877652 22455555543333344456
Q ss_pred CeEEEEEecCCcceEEEEEee
Q 011924 445 ESLFIGVWDRTYGSLLEYGRC 465 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~~~ 465 (475)
.+|++...++....|..+...
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEEEEECCccEEEEEECC
Confidence 678877666666555555443
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.076 Score=52.94 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=60.5
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-CC
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-LG 391 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-~~ 391 (475)
++.+....+....++.+.+.+-...+. +. ..+++..++.||+++++|.-..+|.+.|....- .+....+... ..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecCcCC
Confidence 444455555555556666454332211 22 245799999999999999999999999988754 4555555443 34
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
....+.|.-+...++.- ...|.++.
T Consensus 261 ~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 261 PPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 56677787654333322 33455555
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.031 Score=55.67 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=52.5
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCC
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFG 433 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~ 433 (475)
++.+....+....++.+.+.+... ... +. ..+++..++.||+|++||.-..+|.+.|....-.+....+.. -..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENS-FKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccc-ccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 444555555555556666444322 111 22 246899999999999999999999999987544333333322 235
Q ss_pred CeEEEEEcCCC
Q 011924 434 EISGISFSPDT 444 (475)
Q Consensus 434 ~i~~l~fspdg 444 (475)
.+..+.|.-+.
T Consensus 261 ~p~~~~WCG~d 271 (410)
T PF04841_consen 261 PPKQMAWCGND 271 (410)
T ss_pred CCcEEEEECCC
Confidence 66677776543
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.63 E-value=0.00018 Score=43.96 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=34.8
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
++++..+..|...+.+++|+|.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.018 Score=57.51 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=107.9
Q ss_pred EEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
..|+. +|+++++ ..+|...++........ .. +.-....| .+.++ +++-....+|.++.--+....
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r~k----~~----G~g~~~vw--~~~n~--yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK----AF----GSGLSFVW--SSRNR--YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE----EE----EE-SEEEE---TSSE--EEEE-TTS-EEEEETTEE-TT
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCCccc----cc----CceeEEEE--ecCcc--EEEEECCCeEEEEEcCccccc
Confidence 34444 7777777 45788888873222211 11 11233445 77554 566556888999743233333
Q ss_pred eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCe
Q 011924 271 KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS 350 (475)
Q Consensus 271 ~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v 350 (475)
..+..+..+. .+- + |.+|++.+.+ .|.+||..+++.++++... +|
T Consensus 103 k~i~~~~~~~-----------------------------~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~v 147 (443)
T PF04053_consen 103 KSIKLPFSVE-----------------------------KIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AV 147 (443)
T ss_dssp -----SS-EE-----------------------------EEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-
T ss_pred eEEcCCcccc-----------------------------eEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CC
Confidence 3454444444 332 2 8888777655 7999999999999998733 48
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCC-----------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 351 FASAWHPNGVTFATGNQDKTCRIWDLRNLS-----------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-----------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.|+++|.++|..+.+ ++.|++... . .....+..-...|.+.+|.-+ .++-.+.. .|+. +
T Consensus 148 k~V~Ws~~g~~val~t~~-~i~il~~~~-~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKD-SIYILKYNL-EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp EEEEE-TTSSEEEEE-S--SEEEEEE-H-HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred cEEEEECCCCEEEEEeCC-eEEEEEecc-hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 999999999999999866 577777632 1 034444443557889999866 44433334 6666 3
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
-.|. ...+.....++.=+...|..+.|+..-.|+++
T Consensus 221 ~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v 256 (443)
T PF04053_consen 221 VNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNV 256 (443)
T ss_dssp ETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--E
T ss_pred EcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCE
Confidence 3443 22333334455566667766667666555544
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.59 E-value=0.077 Score=51.13 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=106.0
Q ss_pred CcEEEEEec---------C-ceEEEEeCCCC---CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 199 DKLLVAGGF---------Q-GELICKHLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 199 ~~~lvsg~~---------d-g~i~vw~~~~~---~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
..+|++|+. . |.|.++.+... .............++|.+++-+ +| . ++++ ..+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~~-~-lv~~-~g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---NG-R-LVVA-VGNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---TT-E-EEEE-ETTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---CC-E-EEEe-ecCEEEEEEcc
Confidence 467777753 2 99999999874 1222223334457889998773 33 3 4444 34889999997
Q ss_pred CCe-eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-CceEEEe
Q 011924 266 KYQ-LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASL 343 (475)
Q Consensus 266 ~~~-~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~l 343 (475)
..+ ....-....++. .++....++++++|.....+.++..+. +..+..+
T Consensus 116 ~~~~l~~~~~~~~~~~-----------------------------i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFY-----------------------------ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp TTSSEEEEEEE-BSSS-----------------------------EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred CcccchhhheecceEE-----------------------------EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 766 444333322222 334444466999998877788774432 3323333
Q ss_pred ec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC------C--ceEEEEecC-CCceEEE---EEcc--CCC----
Q 011924 344 CG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL------S--ESVAVLKGN-LGAIRSI---RYTS--DGR---- 403 (475)
Q Consensus 344 ~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~------~--~~~~~~~~~-~~~v~~l---~~sp--dg~---- 403 (475)
.. ....+.++.+-++++.++.+..+|.+.++..... + +......-| ...|+++ .+.| .+.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~ 246 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN 246 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence 32 3456888888877789999999999999987521 1 222222222 2356666 4445 222
Q ss_pred --EEEEEcCCCeEEEE
Q 011924 404 --YMATAEPADFVHVY 417 (475)
Q Consensus 404 --~la~~~~dg~i~iw 417 (475)
.++.++.+|.|.+.
T Consensus 247 ~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 247 RPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEEETTS-EEEE
T ss_pred cceEEEEecCCEEEEE
Confidence 47777888887743
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.59 E-value=0.058 Score=49.45 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=104.0
Q ss_pred eEEEEEE--c-CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--K-DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.++.|++ + +.++++....+.|.-.++. ++... .......+-.-.|++ ..++.+ +++.-.++.+.++++...
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~EgI~y--~g~~~~-vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEGITY--LGNGRY-VLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEEEEE---STTEE-EEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCceeEEE--ECCCEE-EEEEcCCCcEEEEEEecc
Confidence 4889999 3 4466667777888777764 33332 222222345677887 666643 555556889999988432
Q ss_pred ee------eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC---Cc
Q 011924 268 QL------SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT---GK 338 (475)
Q Consensus 268 ~~------~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~---~~ 338 (475)
.. ...+.....-. .. ..+..++|+|.++.|+++-...-..|+.+.. +.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~-----------------~N------~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNK-----------------GN------KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp -TT--EEEEEEEE---S--------------------S------S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred ccccchhhceEEecccccC-----------------CC------cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 11 11122110000 00 1122899999877777776665566666543 22
Q ss_pred eEEEe--------ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCC---------CceEEEEEcc
Q 011924 339 TIASL--------CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTS 400 (475)
Q Consensus 339 ~~~~l--------~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~sp 400 (475)
.+... ......+.+++++| .+++++.+.....|.++|. . ++++..+.-.. ...-.|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-Q-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-C-CCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 11334578899999 5677777778899999995 4 66666554322 2466899999
Q ss_pred CCCEEEEEcCCCeEEEE
Q 011924 401 DGRYMATAEPADFVHVY 417 (475)
Q Consensus 401 dg~~la~~~~dg~i~iw 417 (475)
+|++.++...+ ..++|
T Consensus 232 ~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 232 DGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp T--EEEEETTT-EEEEE
T ss_pred CCCEEEEcCCc-eEEEe
Confidence 99877777654 44443
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.58 E-value=0.0052 Score=60.49 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred ceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeec-----CCCCceeEEEEEeC---CCC--CeEEEEEeCCC
Q 011924 189 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-----DDNAITNAVEIYGS---PSG--AVHFTASNNDC 257 (475)
Q Consensus 189 ~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~s---~~g--~~~l~s~s~dg 257 (475)
..+|++++. +=.+++.|..+|.+.|.|++.+...+...+.. .....++++.|.-. .++ ..++++|.+.|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 568999999 77899999999999999998777665433322 23445777777421 122 24578888999
Q ss_pred eEEEEECCC---CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee-eeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 258 GVRDFDMGK---YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL-CLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 258 ~v~iwd~~~---~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.+.+|.+.- +.....+. ... ......+..+...+..++..-.... .++.+.=...-.-+++......++++.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~--~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFA--GAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEE--EEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred CEEEEEEecCCCCceEEEEe--ecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999998741 11111111 000 0111222233333444443211110 000000000011233334456799999
Q ss_pred CCCCceEEEeecCCCCeEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC----CceEEEEEccCCCE
Q 011924 334 SMTGKTIASLCGHLDFSFASAWH-----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL----GAIRSIRYTSDGRY 404 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~s-----p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~----~~v~~l~~spdg~~ 404 (475)
..+.+..+......-....+++- ..+..|++-..+|.|+++.+-. -+.+..+.-.. ..+....++++|..
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccccccccEECCCCCE
Confidence 88887766554222233344553 3577888889999999999976 34444444321 23456778999998
Q ss_pred EEEEcCCCeEEEEE
Q 011924 405 MATAEPADFVHVYD 418 (475)
Q Consensus 405 la~~~~dg~i~iwd 418 (475)
++..+.. .+.++.
T Consensus 321 ~~~~gps-E~~l~s 333 (395)
T PF08596_consen 321 FYWTGPS-EIQLFS 333 (395)
T ss_dssp EEE-SSS-EEEEEE
T ss_pred EEEeCcc-cEEEEE
Confidence 8777654 344433
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0036 Score=64.47 Aligned_cols=244 Identities=13% Similarity=0.057 Sum_probs=137.1
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+++++| ..-.|+.|-.-|.+.+|...+.+.. .....|..++..+.| |++|.. ++++.+=|.|.+|......
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~w--S~~G~~-l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDW--SHDGTV-LMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee---eeccCCCCCceeEEe--cCCCCe-EEEcCCCceeEEEEeeecc
Confidence 5667888 4456677778899999987765443 556678999999999 999996 9999999999999775211
Q ss_pred eee---eeec-------cccEEeccCCceE---------------EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE
Q 011924 269 LSK---HFRF-------PWPVNVSSSYCII---------------LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV 323 (475)
Q Consensus 269 ~~~---~~~~-------~~~v~~s~~~~~l---------------~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 323 (475)
.+. .+.| -+..+.++++..+ -...-|-..+-. ... --.-.|+|..+.++
T Consensus 135 ~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~-----rs~-~ksgv~~g~~F~~~ 208 (1416)
T KOG3617|consen 135 EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAE-----RSD-EKSGVPKGTEFLFA 208 (1416)
T ss_pred ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhh-----ccc-cccCCCCCcEEEEE
Confidence 111 1111 0111122221111 111112111100 000 11235788999999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC----------------c------
Q 011924 324 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------------E------ 381 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~----------------~------ 381 (475)
+.+|+|+..| +.|++....+.... ..+-|.|-...++..-.+-++.++=+...+ +
T Consensus 209 ~~~GtVyyvd-q~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~ 285 (1416)
T KOG3617|consen 209 GKSGTVYYVD-QNGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIAC 285 (1416)
T ss_pred cCCceEEEEc-CCCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccc
Confidence 9999999888 45666555442211 123344422222222222222222211100 0
Q ss_pred --eEEEEe-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEE-CCCCe------eEEEEe---ccCCCeEEEEEcC
Q 011924 382 --SVAVLK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYD-VKSGY------EKEQEI---DFFGEISGISFSP 442 (475)
Q Consensus 382 --~~~~~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd-~~~~~------~~~~~~---~~~~~i~~l~fsp 442 (475)
....+. .....+.+++++..+..|+.|...|.+.+|- +.++. ...++. ...+.|+.+.|.|
T Consensus 286 sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 286 SESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP 365 (1416)
T ss_pred ccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence 000000 1234689999999999999999999999995 33221 122222 2457899999999
Q ss_pred CCCeEEE
Q 011924 443 DTESLFI 449 (475)
Q Consensus 443 dg~~l~~ 449 (475)
--+.+++
T Consensus 366 ~k~~~av 372 (1416)
T KOG3617|consen 366 IKSTAAV 372 (1416)
T ss_pred ccchhhh
Confidence 6555544
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.049 Score=51.71 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=67.2
Q ss_pred eEEECCCCcEEEEEeC-CCcEEEEECCC--C----ce-EEEeecCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCC
Q 011924 310 HSSQSPDGKLLIIVGD-NPDGLLVDSMT--G----KT-IASLCGHLDFSFASAWHPNGVTFATGNQDK-TCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~-dg~i~iwd~~~--~----~~-~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-~v~iwd~~~~~ 380 (475)
.++||||++.|..+.. .+.|+-|++.. + +. ...+....+..-.++...+|++-+++-..| .|.+|+.. +
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G 244 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--G 244 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--C
Confidence 8999999988887754 46777776641 2 11 122223445666778888898886665654 89999985 7
Q ss_pred ceEEEEecCCCceEEEEE-ccCCCEEEEEc
Q 011924 381 ESVAVLKGNLGAIRSIRY-TSDGRYMATAE 409 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~-spdg~~la~~~ 409 (475)
+.+..+.-+...+++++| .|+.+.|.+.+
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 788888877677888888 45556555444
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.55 E-value=0.076 Score=49.85 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=123.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee----
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF---- 273 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~---- 273 (475)
.++.|+.|+.+| +.++++...... ... .+...|..+.+ .++-+.+++.+ |+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~--~~i--~~~~~I~ql~v--l~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP--TRI--LKLSSITQLSV--LPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc--eeE--eecceEEEEEE--ecccCEEEEEc--CCccEEEEchhhcccccccccc
Confidence 678899998888 888888322222 111 12223788877 66666544443 599999998764433311
Q ss_pred -----------eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE--ECCCCcEEEEEeCCCcEEEEECCCC---
Q 011924 274 -----------RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS--QSPDGKLLIIVGDNPDGLLVDSMTG--- 337 (475)
Q Consensus 274 -----------~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~--~sp~g~~l~~~~~dg~i~iwd~~~~--- 337 (475)
.....+. ..+ -.+.+...+++.....|.+|.....
T Consensus 77 ~~~~~~~~~~~~~~~~v~-----------------------------~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~ 127 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVS-----------------------------FFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS 127 (275)
T ss_pred ccccccccccccccCCee-----------------------------EEeeccccccceEEEEEECCEEEEEEEECCccc
Confidence 1111222 222 1233444444445558888876642
Q ss_pred --ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC------------CCceEEEEEccCCC
Q 011924 338 --KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN------------LGAIRSIRYTSDGR 403 (475)
Q Consensus 338 --~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~------------~~~v~~l~~spdg~ 403 (475)
+....+. -.+.+.+++|. ++.++.|..++ ..+.|+.+ +.....+... ..++..+.. +++.
T Consensus 128 f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 201 (275)
T PF00780_consen 128 FSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNE 201 (275)
T ss_pred ccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEe-CCce
Confidence 3455555 45788999998 56778777654 78889874 3332222111 123333333 3456
Q ss_pred EEEEEcCCCeEEEEECCCCeeEE-EEeccCCCeEEEEEcCCCCeEEEEEe------cCCcceEEEEEeecceeeec
Q 011924 404 YMATAEPADFVHVYDVKSGYEKE-QEIDFFGEISGISFSPDTESLFIGVW------DRTYGSLLEYGRCRNYSYLD 472 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~fspdg~~l~~~~~------D~~~~~ll~~~~~~~~~~l~ 472 (475)
+|++- +..-.+.| ..|...+ ........+..+++. ..||++-.. +-.-+.+++....++..+|.
T Consensus 202 ~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~ 272 (275)
T PF00780_consen 202 FLLCY--DNIGVFVN-KNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLC 272 (275)
T ss_pred EEEEe--cceEEEEc-CCCCcCcccEEEcCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEe
Confidence 66653 44444455 4454443 233334566666664 346665433 22334666666666555553
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0022 Score=62.77 Aligned_cols=145 Identities=15% Similarity=0.208 Sum_probs=100.3
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc----
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK---- 318 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~---- 318 (475)
..+.+.++.++.....++-.|+++|+.+........|+ -+.+.|+.+
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~-----------------------------mv~~t~d~K~~Ql 392 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDIN-----------------------------MVDITPDFKFAQL 392 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCCcc-----------------------------eeeccCCcchhcc
Confidence 33455567777777888889999999998888655555 445555432
Q ss_pred ---EEEEEeCCCcEEEEECC-CCc-eEEEeecCC----CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC
Q 011924 319 ---LLIIVGDNPDGLLVDSM-TGK-TIASLCGHL----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 319 ---~l~~~~~dg~i~iwd~~-~~~-~~~~l~~h~----~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~ 389 (475)
.-++|-.+..|.-||.| .++ .+..-++|. ....|.+-..+ -++|+||.+|-||+||- ...+....+++-
T Consensus 393 ~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgL 470 (644)
T KOG2395|consen 393 TSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGL 470 (644)
T ss_pred cccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccccc
Confidence 12345567789999988 333 333334433 12334443334 48999999999999997 435566677888
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+|..+..+.+|++|++.+. ..+.+.++
T Consensus 471 G~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 471 GDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred CCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 889999999999999887764 45666664
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.078 Score=53.08 Aligned_cols=217 Identities=10% Similarity=0.069 Sum_probs=113.8
Q ss_pred cccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCc
Q 011924 131 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQG 209 (475)
Q Consensus 131 ~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg 209 (475)
+.++++.+.+.++.|....++...++....-+... ...-..+.| ..+.+++-...+
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----------------------~G~g~~~vw~~~n~yAv~~~~~ 89 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----------------------FGSGLSFVWSSRNRYAVLESSS 89 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----------------------EEE-SEEEE-TSSEEEEE-TTS
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----------------------cCceeEEEEecCccEEEEECCC
Confidence 34677888888888888888888888744332211 123345566 445566666688
Q ss_pred eEEEE-eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 210 ELICK-HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 210 ~i~vw-~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
+|.++ ++...... .+.. +.++-.++ + |.. |...+ ++.|.+||+.+++.++.+..+. |.
T Consensus 90 ~I~I~kn~~~~~~k---~i~~----~~~~~~If--~-G~L-L~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk-------- 148 (443)
T PF04053_consen 90 TIKIYKNFKNEVVK---SIKL----PFSVEKIF--G-GNL-LGVKS-SDFICFYDWETGKLIRRIDVSA-VK-------- 148 (443)
T ss_dssp -EEEEETTEE-TT------------SS-EEEEE----SSS-EEEEE-TTEEEEE-TTT--EEEEESS-E--E--------
T ss_pred eEEEEEcCccccce---EEcC----CcccceEE--c-CcE-EEEEC-CCCEEEEEhhHcceeeEEecCC-Cc--------
Confidence 88884 44332211 1111 11223332 2 765 44443 3489999999999999988553 77
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-----------ceEEEeecCCCCeEEEEEec
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-----------KTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-----------~~~~~l~~h~~~v~~~~~sp 357 (475)
.+.|+++|.+++..+.+ .+.|++.... .....+..-...|.+.+|.-
T Consensus 149 ---------------------~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~ 206 (443)
T PF04053_consen 149 ---------------------YVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE 206 (443)
T ss_dssp ---------------------EEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred ---------------------EEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence 89999999999999766 5777775422 03333433356788889976
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+ .|+-.+.. .++. +.+ + ...++..-..++.=+.+.|..+.|.....++.|..+.+.
T Consensus 207 d--~fiYtT~~-~lkY--l~~-G-e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 207 D--CFIYTTSN-HLKY--LVN-G-ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp T--EEEEE-TT-EEEE--EET-T-EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred C--EEEEEcCC-eEEE--EEc-C-CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 5 44444444 6665 322 2 233333334466667777766677777777777776654
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00019 Score=73.35 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=85.1
Q ss_pred eEEECCCCcEEEEEe----CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVG----DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~----~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
-.+|+|...++++++ ..|.+.||- .+|.+-.... .+-.+.++||||..-.|+.|=.-|.+.+|.... .+....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 347999999999886 457787774 5676543332 233467799999988889988889999999865 454555
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
...|..+|..+.|||+|..|+++..-|.|++|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56688999999999999999999999999999865
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.48 E-value=0.014 Score=45.65 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=66.3
Q ss_pred eEEECC---CC-cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSP---DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp---~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++++.. +| +.|++|+.|..|++|+- ...+..+. ..+.|.+++-... ..|+.+..+|||.+|+-. .+.-+
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR- 76 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR- 76 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-
Confidence 555443 33 57899999999999973 46666776 4556777766655 679999999999999863 23222
Q ss_pred EecCCCceEEEEE-ccCC---CEEEEEcCCCeEEE
Q 011924 386 LKGNLGAIRSIRY-TSDG---RYMATAEPADFVHV 416 (475)
Q Consensus 386 ~~~~~~~v~~l~~-spdg---~~la~~~~dg~i~i 416 (475)
++... .+.++++ ..+| +.|++|-.+|.|-+
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22222 3555554 3333 47889988887743
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.45 E-value=0.016 Score=60.11 Aligned_cols=180 Identities=10% Similarity=0.020 Sum_probs=98.3
Q ss_pred CceeEEEEEeCCCCCeEEEEEe-----CCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 233 AITNAVEIYGSPSGAVHFTASN-----NDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s-----~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
..+...++ +|+|+.++++.. .|. .|.+++.. +.. ..+.......
T Consensus 350 ~~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t------------------------- 400 (591)
T PRK13616 350 GNITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLT------------------------- 400 (591)
T ss_pred cCcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCC-------------------------
Confidence 35677788 999998555542 244 44444542 222 2222222344
Q ss_pred eeeeeEEECCCCcEEEEEeCC------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 306 LCLQHSSQSPDGKLLIIVGDN------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~~d------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
...|+|+|+.+++..+. +.+.+.++..+.... .....|..+.|||||..+|... ++.|.+
T Consensus 401 ----~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 401 ----RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ----CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 67899998877776533 223333333332221 2345799999999999988876 466666
Q ss_pred ---EECCCCCc-eE---EEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEE--ECCCCeeEEEEec--cCCCeEEEEEc
Q 011924 374 ---WDLRNLSE-SV---AVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVY--DVKSGYEKEQEID--FFGEISGISFS 441 (475)
Q Consensus 374 ---wd~~~~~~-~~---~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iw--d~~~~~~~~~~~~--~~~~i~~l~fs 441 (475)
-.... +. .+ ..+.. ....+.++.|.+++.++ ++..++...+| ++. |.....+.. ...++..++=+
T Consensus 473 a~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 473 AVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred EEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecC-CccccccCCCCccCceEEEecC
Confidence 33222 22 11 11222 22346889999999855 54444433444 444 222222122 24567777777
Q ss_pred CCCCeEEEEEecC
Q 011924 442 PDTESLFIGVWDR 454 (475)
Q Consensus 442 pdg~~l~~~~~D~ 454 (475)
++ .|+++..++
T Consensus 550 ~~--~iyv~~~~g 560 (591)
T PRK13616 550 PS--TVYVTDARA 560 (591)
T ss_pred Cc--eEEEEcCCc
Confidence 63 465555443
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0008 Score=66.99 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE-EEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
-.+.-+.|+|.-.++|++..+|.|.+..+. .+.+-++..+...++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 356778999999999999999999998884 566777775665666 99999999999999999999999999988776
Q ss_pred EEe-ccCCCeEEEEEcC
Q 011924 427 QEI-DFFGEISGISFSP 442 (475)
Q Consensus 427 ~~~-~~~~~i~~l~fsp 442 (475)
... .....|+++-|+|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345677777764
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.0047 Score=64.09 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred eeeEEECCCCcEEEEEe------CCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCC
Q 011924 308 LQHSSQSPDGKLLIIVG------DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDLRN 378 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~------~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iwd~~~ 378 (475)
+.++++||+|+.++... .+. .|.+++. .+.......+. ....-.|+|+|..+++.+.. ..+++.+-..
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 34889999999988775 233 4555554 23332223332 37788999999988887543 2233332211
Q ss_pred CCceEEEE--e------cCCCceEEEEEccCCCEEEEEcCCCeEEE---EECCCCee-E---EEEec-cCCCeEEEEEcC
Q 011924 379 LSESVAVL--K------GNLGAIRSIRYTSDGRYMATAEPADFVHV---YDVKSGYE-K---EQEID-FFGEISGISFSP 442 (475)
Q Consensus 379 ~~~~~~~~--~------~~~~~v~~l~~spdg~~la~~~~dg~i~i---wd~~~~~~-~---~~~~~-~~~~i~~l~fsp 442 (475)
...+..+ . ...+.|..++|||||+.||... ++.|++ -....|.. + ..+.. ....+.++.|.+
T Consensus 429 -~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 429 -TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred -CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 1111111 0 2245799999999999888766 467777 44445541 1 11222 223468899999
Q ss_pred CCCeEEEEEec
Q 011924 443 DTESLFIGVWD 453 (475)
Q Consensus 443 dg~~l~~~~~D 453 (475)
++.. +++..+
T Consensus 507 ~~~L-~V~~~~ 516 (591)
T PRK13616 507 GDSL-VVGRSD 516 (591)
T ss_pred CCEE-EEEecC
Confidence 9984 455443
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.034 Score=43.49 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=70.8
Q ss_pred eeEEEEE-eCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIY-GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~-~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
|+++++. +..+|..-|++||.|..||+|+- ...+..+.....+. +++-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~-----------------------------~L~~ 50 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVT-----------------------------SLCS 50 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceE-----------------------------EEEE
Confidence 4555553 24456667999999999999985 46777777677777 6665
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CC---CEEEEEeCCCeEE
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NG---VTFATGNQDKTCR 372 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g---~~l~t~s~dg~v~ 372 (475)
... ..++.+..+|+|-+|+- ...+.+.+. ...+.++++.. ++ .-|++|-.+|.|-
T Consensus 51 ~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 51 LGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 554 56888999999999984 334445553 33466666554 32 3688888888764
No 367
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0018 Score=61.05 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=96.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.....+...|..++| ||...-++..++.+.+|+|.|+++...+..+....++-
T Consensus 187 q~lp~~g~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w------------------------- 239 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW------------------------- 239 (463)
T ss_pred hcccccchhhhhhcc--CccccceeeeeccCceEEEEecccceeeeheeccCCce-------------------------
Confidence 466677888999999 88877678899999999999999999888888667777
Q ss_pred eeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCc-eEEEeec--CCCCeEEE------EEecCCCEEEEEeCCCeEEEEE
Q 011924 306 LCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGK-TIASLCG--HLDFSFAS------AWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 306 ~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~-~~~~l~~--h~~~v~~~------~~sp~g~~l~t~s~dg~v~iwd 375 (475)
+.+|.-+. ..+.+|-.+|.|++||++... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|.
T Consensus 240 ----SC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~e 313 (463)
T KOG1645|consen 240 ----SCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYE 313 (463)
T ss_pred ----eeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhh
Confidence 88998855 456666789999999998543 2333322 11223222 233445555555543 56677
Q ss_pred CCCCC-ceEEEEe-cCCCceEEEEEccCCCEEE
Q 011924 376 LRNLS-ESVAVLK-GNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 376 ~~~~~-~~~~~~~-~~~~~v~~l~~spdg~~la 406 (475)
+.... .+..++. +..+...++++.+..++++
T Consensus 314 i~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 314 IVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred hhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 64322 1222222 2345666777776555443
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.34 E-value=0.028 Score=56.28 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=87.2
Q ss_pred eEEECCCCcEEEEE-eCCC----cEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeCCC-----------eEE
Q 011924 310 HSSQSPDGKLLIIV-GDNP----DGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDK-----------TCR 372 (475)
Q Consensus 310 ~~~~sp~g~~l~~~-~~dg----~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~dg-----------~v~ 372 (475)
..++||+|+++|.+ +..| .++++|+.+|+.+.. +... ....+.|.++++.|+....+. .|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 56899999999876 3333 599999999987653 2221 122399999988877665332 478
Q ss_pred EEECCCCCce-EEEEecCCCc--eEEEEEccCCCEEEEEcC---C-CeEEEEECCCC----eeEEEEeccCCCe-EEEEE
Q 011924 373 IWDLRNLSES-VAVLKGNLGA--IRSIRYTSDGRYMATAEP---A-DFVHVYDVKSG----YEKEQEIDFFGEI-SGISF 440 (475)
Q Consensus 373 iwd~~~~~~~-~~~~~~~~~~--v~~l~~spdg~~la~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~i-~~l~f 440 (475)
.|.+.+.... ...+...... ...+..++||++|+..+. + ..+++.++..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888653322 3444443332 568889999998875433 2 45888898874 2333333333333 33333
Q ss_pred cCCCCeEEEEEecCCcceEEEEE
Q 011924 441 SPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~ll~~~ 463 (475)
. .+.+++.+-.+..-+.|+.+.
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEec
Confidence 3 434444444445555666554
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.021 Score=51.87 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=97.3
Q ss_pred eEEECCC-CcEEEEEeCCCc-EEEEECCCCceEEEeecCCCCeE--EEEEecCCCEEEEEeC-----CCeEEEEECCCCC
Q 011924 310 HSSQSPD-GKLLIIVGDNPD-GLLVDSMTGKTIASLCGHLDFSF--ASAWHPNGVTFATGNQ-----DKTCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~-g~~l~~~~~dg~-i~iwd~~~~~~~~~l~~h~~~v~--~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~~ 380 (475)
.++++|. ..-++.+-.-|+ ..++|....+...++...++.-+ .=.|||||.+|+..-. -|.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 6778884 344555544443 46888887776666543332211 2369999999987643 3689999999877
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCC------------------CeEEEEECCCCeeEEEEe----ccCCCeEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------------------DFVHVYDVKSGYEKEQEI----DFFGEISGI 438 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------------------g~i~iwd~~~~~~~~~~~----~~~~~i~~l 438 (475)
+.+..+..|.-....+.+.+||+.|+.+... -.+.+.|..+|..+.+.. .+.-.|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 7888888888788899999999999887531 124444555555443322 233568899
Q ss_pred EEcCCCCeEEEEEec
Q 011924 439 SFSPDTESLFIGVWD 453 (475)
Q Consensus 439 ~fspdg~~l~~~~~D 453 (475)
+..+||..++.+-.-
T Consensus 232 d~g~dgtvwfgcQy~ 246 (366)
T COG3490 232 DIGRDGTVWFGCQYR 246 (366)
T ss_pred eeCCCCcEEEEEEee
Confidence 999999877766443
No 370
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.30 E-value=0.17 Score=48.08 Aligned_cols=221 Identities=15% Similarity=0.051 Sum_probs=131.5
Q ss_pred EEEcCcEEEEE----------ecCceEEEEeCCCCCceEEEeeecCCC----CceeEEEEEeCCCCCeEEEE-EeCCCeE
Q 011924 195 LAVKDKLLVAG----------GFQGELICKHLDRPGVSFCSRTTYDDN----AITNAVEIYGSPSGAVHFTA-SNNDCGV 259 (475)
Q Consensus 195 l~~~~~~lvsg----------~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~v~~l~~~~s~~g~~~l~s-~s~dg~v 259 (475)
++.+++.++++ -..-.|.+||..+-.......+...+. ...+...+ +.+|+++++. .+--.+|
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESSSEEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCCCCeE
Confidence 44566666653 345578899998776555444433211 12234455 8888875443 2455679
Q ss_pred EEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-CC
Q 011924 260 RDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-TG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~ 337 (475)
.|-|+..++.+..+..+++.. +-| ..+.+.+.+.||.+.-..+. .|
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~--------------------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWL--------------------------------IYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEE--------------------------------EEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred EEEECCCCceeeeecCCCEEE--------------------------------EEecCCCceEEEecCCceEEEEECCCC
Confidence 999999999998888777554 223 12457777788998888887 66
Q ss_pred ceEEEee----cCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecC----------CCceEEEEEccC
Q 011924 338 KTIASLC----GHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGN----------LGAIRSIRYTSD 401 (475)
Q Consensus 338 ~~~~~l~----~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~----------~~~v~~l~~spd 401 (475)
+..++.. ...++++ .-++...+..++--+..|.|+--|+.... +....+... .+.-.-+++++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 6653322 1223333 33555555566667789999988886422 112222211 123345788775
Q ss_pred CCEEEEEcC---CC-------eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 402 GRYMATAEP---AD-------FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 402 g~~la~~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
...|++.-. .+ .|.+||+++++.+..+.. ..++.+|..+.+.+=++.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 554444321 11 599999999998887763 3568899999987644433
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0034 Score=61.48 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=93.8
Q ss_pred CCCcEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCC-------EEEEEeCCCeEEEEECCCCCc-eEEE
Q 011924 315 PDGKLLI-IVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-------TFATGNQDKTCRIWDLRNLSE-SVAV 385 (475)
Q Consensus 315 p~g~~l~-~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~-------~l~t~s~dg~v~iwd~~~~~~-~~~~ 385 (475)
.+.++++ .+.....++-.|+..|+.+..+.-+.+ |.-+.+.|+.+ .-+.|-.+..|.-||.|-.+. .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 445556788999999999999987776 77778888543 123455567788899986444 2333
Q ss_pred EecCC----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE-EEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 386 LKGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-EQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 386 ~~~~~----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.++|. ....|.+-..+| ++|+|+.+|.|++||- .+..- ..+.+...+|..+..+.+|++|++.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 33332 234455555566 7999999999999995 55443 345566789999999999999987763
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.27 E-value=0.14 Score=46.78 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=118.5
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
+....-+..+.+ ..+|. ++-+.+.-| .|+.+|+.+++.......+...- . +
T Consensus 41 Hd~~aFTQGL~~--~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-g-----------------E------ 93 (264)
T PF05096_consen 41 HDPTAFTQGLEF--LDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-G-----------------E------ 93 (264)
T ss_dssp --TT-EEEEEEE--EETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---E-----------------E------
T ss_pred CCCcccCccEEe--cCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-c-----------------e------
Confidence 344455677777 56665 466665555 69999999998877766443332 0 0
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.++.- ++++....=.++...+||..+-+.+.++. ..+.-+.++ .++..|+.+.....+.++|..+ .+....+
T Consensus 94 ---Git~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i 165 (264)
T PF05096_consen 94 ---GITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTI 165 (264)
T ss_dssp ---EEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEE
T ss_pred ---eEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEE
Confidence 23333 33444455578899999999999888886 345666676 4677777777777899999876 4445544
Q ss_pred ecC--C---CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec------------c---CCCeEEEEEcCCCCe
Q 011924 387 KGN--L---GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID------------F---FGEISGISFSPDTES 446 (475)
Q Consensus 387 ~~~--~---~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~i~~l~fspdg~~ 446 (475)
.-. . ..+..+-|- +|...|=.=....|...|..+|.....+-- . ..-.++|+|.|.+..
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 432 1 245556665 677777666678899999999987766531 0 235799999999888
Q ss_pred EEEEE
Q 011924 447 LFIGV 451 (475)
Q Consensus 447 l~~~~ 451 (475)
|++.+
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88876
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.0012 Score=40.08 Aligned_cols=38 Identities=32% Similarity=0.705 Sum_probs=33.8
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.+...+..|...|.++.|.|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778888999999999999999999999999996
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.20 E-value=0.36 Score=49.87 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=44.1
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-Ccee-EEEEEeCCCCCeEEEEEe-----CCCeEEEEECCCC
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AITN-AVEIYGSPSGAVHFTASN-----NDCGVRDFDMGKY 267 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~-~l~~~~s~~g~~~l~s~s-----~dg~v~iwd~~~~ 267 (475)
+++.+..++.++.+|.|...|..+.+............ ..+. .-.+ . ++ .+++..+ .+|.|..+|.+++
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCC
Confidence 34556677888889999999988777654333211110 0111 1111 1 34 3233322 2689999999998
Q ss_pred eeeeeee
Q 011924 268 QLSKHFR 274 (475)
Q Consensus 268 ~~~~~~~ 274 (475)
+.+-.+.
T Consensus 192 ~~lW~~~ 198 (527)
T TIGR03075 192 KLVWRRY 198 (527)
T ss_pred ceeEecc
Confidence 8776544
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.11 E-value=0.25 Score=46.36 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=123.3
Q ss_pred cCCCeEEEecCCeEEEEec-CCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeC
Q 011924 140 TSKHDVYLMSHFSVIHWSS-LTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 140 ~~~~~v~~~~~~~v~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~ 216 (475)
.....|++..+..++.++. .......+.. ..+|..+.+ +-+.|++= .||.++++++
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------------------~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--------------------LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--------------------cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 4455666665555777765 2222222221 123777777 33333333 3599999998
Q ss_pred CCCCceEEEe-----------eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC----C-eeeeeeeccccEE
Q 011924 217 DRPGVSFCSR-----------TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----Y-QLSKHFRFPWPVN 280 (475)
Q Consensus 217 ~~~~~~~~~~-----------~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~----~-~~~~~~~~~~~v~ 280 (475)
..-....... ........+...+......+...++++ ....|.+|.+.. + +..+.+..+..+.
T Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~ 142 (275)
T PF00780_consen 64 DSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPS 142 (275)
T ss_pred hhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcE
Confidence 7544332100 011122233333311134444445544 455888887754 2 4666777777777
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC------------C
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL------------D 348 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~------------~ 348 (475)
+++|. ++.+++|..++ ..+.|+.++.....+.... .
T Consensus 143 -----------------------------~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (275)
T PF00780_consen 143 -----------------------------SIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK 190 (275)
T ss_pred -----------------------------EEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCC
Confidence 88888 56777776544 7889998776544432111 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE--EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
++..+.. +++.+|++- +....+.|.. +++.+ .+.-. ..+.++++. ..||++... +.|.||++.++..++
T Consensus 191 ~~~~~~~-~~~e~Ll~~--~~~g~fv~~~--G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 191 PLGIFQL-SDNEFLLCY--DNIGVFVNKN--GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred ceEEEEe-CCceEEEEe--cceEEEEcCC--CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 2333333 344555543 3344444543 33332 23222 245566664 347777665 459999999998877
Q ss_pred EEec
Q 011924 427 QEID 430 (475)
Q Consensus 427 ~~~~ 430 (475)
.+..
T Consensus 262 ~i~~ 265 (275)
T PF00780_consen 262 TIPL 265 (275)
T ss_pred EEEC
Confidence 6653
No 376
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.09 E-value=0.046 Score=53.77 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=82.3
Q ss_pred eEEECCCCcEEEEEe-----------CCC-cEEEEECC--CCce--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 310 HSSQSPDGKLLIIVG-----------DNP-DGLLVDSM--TGKT--IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~-----------~dg-~i~iwd~~--~~~~--~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.|+|.++|+++++-. ..+ .|.+++-. .|+. ...+.........+++.++| +++ ++.....++
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~ 95 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFL 95 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEE
Confidence 789999999887753 223 67777643 3432 33444334556889999998 444 445544445
Q ss_pred EECCCCC----ceEEE---EecC----CCceEEEEEccCCCEEEEEcC-------------------CCeEEEEECCCCe
Q 011924 374 WDLRNLS----ESVAV---LKGN----LGAIRSIRYTSDGRYMATAEP-------------------ADFVHVYDVKSGY 423 (475)
Q Consensus 374 wd~~~~~----~~~~~---~~~~----~~~v~~l~~spdg~~la~~~~-------------------dg~i~iwd~~~~~ 423 (475)
.|....+ +.... +... ......++|.|||++.++-+. .+.|.-++..++.
T Consensus 96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 4553211 11111 2221 234678999999986654441 1446666655443
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
...+..-.....+++|+|+|+.+++-..+.
T Consensus 176 -~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 176 -LRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred -EEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 333333334567999999998876644333
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.08 E-value=0.046 Score=50.62 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=87.5
Q ss_pred eEEECCCCcEEEEEe---CCCcEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-CCCCCceEE
Q 011924 310 HSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD-LRNLSESVA 384 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd-~~~~~~~~~ 384 (475)
+.+++++|+.++... ....++++. .+..... +.+ ..+....|++++...+....+...+++. .........
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 889999999888776 333445544 3333333 233 3677889999988777777677777774 222122222
Q ss_pred EEecC--CCceEEEEEccCCCEEEEEc---CCCeEEEEECC---CC--e----eEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 385 VLKGN--LGAIRSIRYTSDGRYMATAE---PADFVHVYDVK---SG--Y----EKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 385 ~~~~~--~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
.+... .+.|+.+++||||..+|... .++.|.|--+. .+ . .+.........+..+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 22221 12899999999998877665 34677776542 23 1 111111234678999999999877776
Q ss_pred EecC
Q 011924 451 VWDR 454 (475)
Q Consensus 451 ~~D~ 454 (475)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5443
No 378
>PHA02713 hypothetical protein; Provisional
Probab=97.07 E-value=0.019 Score=59.64 Aligned_cols=192 Identities=11% Similarity=0.096 Sum_probs=98.9
Q ss_pred EcCcEEEEEecC------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEECC
Q 011924 197 VKDKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMG 265 (475)
Q Consensus 197 ~~~~~lvsg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~~ 265 (475)
.++.++++||.+ ..+.+||............ .........+.+ +|+ +.+.|+.++ ++..||..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R~~~~~~~~----~g~-IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNRCRFSLAVI----DDT-IYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchhhceeEEEE----CCE-EEEECCcCCCCCCceEEEEECC
Confidence 388888899864 3466777765543211111 111111122222 454 467776653 47778877
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------------------
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------------------ 327 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------------------ 327 (475)
+.+....-..+.+... . ++ ..-+|++.++||.++
T Consensus 376 ~~~W~~~~~mp~~r~~--------------------------~-~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 376 DDKWKMLPDMPIALSS--------------------------Y-GM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCeEEECCCCCccccc--------------------------c-cE-EEECCEEEEEeCCCccccccccccccccccccc
Confidence 6544332221211110 0 11 122677777776542
Q ss_pred -----cEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCC--CCceEEEEecCCCce
Q 011924 328 -----DGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRN--LSESVAVLKGNLGAI 393 (475)
Q Consensus 328 -----~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~d------g~v~iwd~~~--~~~~~~~~~~~~~~v 393 (475)
.+..||..+.+-. .+.. ........+..-+++..+.|+.+ ..|..||..+ ....+..+.......
T Consensus 428 ~~~~~~ve~YDP~td~W~-~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWE-TLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccccceEEEECCCCCeEe-ecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 4677887766422 1111 11111111222366777777654 2467899875 234444444333333
Q ss_pred EEEEEccCCCEEEEEcCCC--eEEEEECCCCeeE
Q 011924 394 RSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEK 425 (475)
Q Consensus 394 ~~l~~spdg~~la~~~~dg--~i~iwd~~~~~~~ 425 (475)
..+.+ +|++.++|+.++ .+..||+.+.+-.
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 33333 688888998887 6778888776543
No 379
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=97.06 E-value=0.0026 Score=40.15 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=31.3
Q ss_pred CceEEEEEccCC---CEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 391 GAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 391 ~~v~~l~~spdg---~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
++|++++|||.. .+|+.+...|.|+|+|++++...+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence 478999999844 59999999999999999976555544
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.03 E-value=0.37 Score=47.12 Aligned_cols=225 Identities=12% Similarity=0.121 Sum_probs=101.0
Q ss_pred cCcEEEEEe-cCceEEEEeCCCCC-ceEEEeeecC-----CCCceeEEEEEeCCCCCeEEEEE--eC----CCeEEEEEC
Q 011924 198 KDKLLVAGG-FQGELICKHLDRPG-VSFCSRTTYD-----DNAITNAVEIYGSPSGAVHFTAS--NN----DCGVRDFDM 264 (475)
Q Consensus 198 ~~~~lvsg~-~dg~i~vw~~~~~~-~~~~~~~~~~-----~~~~v~~l~~~~s~~g~~~l~s~--s~----dg~v~iwd~ 264 (475)
+.++|+..+ .++.|+|.|+.+.. .....++... ..+...--.++--|+|.. ++++ .. -|.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~i-mIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRI-MISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--E-EEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccE-EEEeccCCCCCCCCcEEEEcC
Confidence 456777666 78999999987332 2222233221 111122222222577875 5553 22 246778888
Q ss_pred CCCeeeeeeeccc-cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-------------------
Q 011924 265 GKYQLSKHFRFPW-PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG------------------- 324 (475)
Q Consensus 265 ~~~~~~~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~------------------- 324 (475)
++++......... ...|. +.+-|.|..+.+++..
T Consensus 165 ~tf~v~g~We~~~~~~~~g--------------------------YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFG--------------------------YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp TT--EEEE--SB-TT--------------------------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred ccccccceeccCCCCCCCC--------------------------CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 8877766554321 11111 1345566666666542
Q ss_pred -CCCcEEEEECCCCceEEEeecCCC--CeEEEEEec--CCCEEEEE-eCCCeEEEEEC-CCCCc----eEEEEecC----
Q 011924 325 -DNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHP--NGVTFATG-NQDKTCRIWDL-RNLSE----SVAVLKGN---- 389 (475)
Q Consensus 325 -~dg~i~iwd~~~~~~~~~l~~h~~--~v~~~~~sp--~g~~l~t~-s~dg~v~iwd~-~~~~~----~~~~~~~~---- 389 (475)
....+++||+.+.+.++++.--.. .+..+.|.. +..+-.++ .-.++|-.|-- .. +. .+..+...
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-GEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-TEEEEEEEEEE--EE--S
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-CCeeeeEEEECCCcccCc
Confidence 236799999999999999874332 355676654 34433333 23334444432 22 21 12222110
Q ss_pred -------------CCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCee---EEEEec----------------cCCCeE
Q 011924 390 -------------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYE---KEQEID----------------FFGEIS 436 (475)
Q Consensus 390 -------------~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~---~~~~~~----------------~~~~i~ 436 (475)
..-|+.+..|.|.|+|...+. .|.|+.||+..... ..++.. ..+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 234788999999999987764 79999999976433 222220 123456
Q ss_pred EEEEcCCCCeEEEE
Q 011924 437 GISFSPDTESLFIG 450 (475)
Q Consensus 437 ~l~fspdg~~l~~~ 450 (475)
-+..|.||++|.+.
T Consensus 378 MvqlS~DGkRlYvT 391 (461)
T PF05694_consen 378 MVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTSSEEEEE
T ss_pred eEEEccCCeEEEEE
Confidence 78899999999876
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.90 E-value=0.46 Score=45.99 Aligned_cols=259 Identities=14% Similarity=0.062 Sum_probs=120.1
Q ss_pred EEecCCCeEEEec----CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 137 VWATSKHDVYLMS----HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 137 ~~~~~~~~v~~~~----~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
.|..++..+++.+ ..++++.+..+++..++.+..+.-.. | .+++.+++.|+-......|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-----g-----------~~~s~~~~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-----G-----------GFLSPDDRALYYVKNGRSLR 105 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-----T------------EE-TTSSEEEEEETTTEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-----c-----------eEEecCCCeEEEEECCCeEE
Confidence 3555555555543 46788888888888777654322111 1 23445556655444445777
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE---------------------eCCCeEEEEECCCCeeee
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---------------------NNDCGVRDFDMGKYQLSK 271 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~---------------------s~dg~v~iwd~~~~~~~~ 271 (475)
..++.+.+.. .+..-...-+....|..+.++..++-+. .-.+.|..-|+.+++...
T Consensus 106 ~vdL~T~e~~---~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 106 RVDLDTLEER---VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEETTT--EE---EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEECCcCcEE---EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 7787775543 2333334444444554355665422111 012345555777777655
Q ss_pred eeec---cccEEeccCCceEEE-----------EEEeecccce-EEEE------eeeeeeEEECCCCcEEEEEe-----C
Q 011924 272 HFRF---PWPVNVSSSYCIILL-----------CRLLNFMTEK-VIIC------LLCLQHSSQSPDGKLLIIVG-----D 325 (475)
Q Consensus 272 ~~~~---~~~v~~s~~~~~l~~-----------~~v~d~~~~~-~~~~------~~~i~~~~~sp~g~~l~~~~-----~ 325 (475)
.+.. .+-+.|+|....+.. -|+|-+.+.. .... ...+.+=-|.|+|..+...+ .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 5542 245668888777642 3678665422 1111 11445666999999887643 2
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC----------------eEEEEECCCCCceEEEEecC
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK----------------TCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg----------------~v~iwd~~~~~~~~~~~~~~ 389 (475)
+..|.-+|+.+++....... .+..-.--+++|++++-=+.|. -|.++++.. +.. ..+..|
T Consensus 263 ~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~-~~~-~~l~~h 338 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA-GRF-RKLARH 338 (386)
T ss_dssp -EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT-TEE-EEEEE-
T ss_pred ceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc-Cce-eeeeec
Confidence 44566778888765433222 2344455578998876533332 466777754 332 222222
Q ss_pred ----------CC-ceEEEEEccCCCEEEEEcC-CCeEEEEE
Q 011924 390 ----------LG-AIRSIRYTSDGRYMATAEP-ADFVHVYD 418 (475)
Q Consensus 390 ----------~~-~v~~l~~spdg~~la~~~~-dg~i~iwd 418 (475)
.. .-..+.|+|||++++..|. .|...||=
T Consensus 339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 11 1247899999998776554 56555553
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.83 E-value=0.41 Score=44.32 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.+...++ +++|+.+.+....++.-.+|-...+...........+. ..+|
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~-----------------------------~PS~ 73 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLT-----------------------------RPSW 73 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccc-----------------------------cccc
Confidence 4667778 99998755554334444444433333333322333555 7789
Q ss_pred CCCCcEEEEEeCCCcEEEEE-CCCCceEE-Eeec--CCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCC--C----
Q 011924 314 SPDGKLLIIVGDNPDGLLVD-SMTGKTIA-SLCG--HLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNL--S---- 380 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd-~~~~~~~~-~l~~--h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~--~---- 380 (475)
++++...++...+...+++. ..++.... .+.. -...|.++++||||..+|... .++.|.|=-+... +
T Consensus 74 d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 74 DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred cCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 99988877776666666663 33333221 2221 112899999999999888776 2466666654311 2
Q ss_pred --ceEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 381 --ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 381 --~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
.++.........++.+.|.+++.+++.+...+
T Consensus 154 l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 154 LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 12233333346889999999998877776544
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.82 E-value=0.1 Score=54.24 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=111.3
Q ss_pred cCcEEEEEecCc------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEEECC
Q 011924 198 KDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFDMG 265 (475)
Q Consensus 198 ~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iwd~~ 265 (475)
.+.+++.||..+ .+.++|........+.... .... ..++++ -+| .++++|+.+ .++..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~-~~~~~~---~~~-~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRC-RVGVAV---LNG-KLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccc-cccEEE---ECC-EEEEEccccCCCcccceEEEecCC
Confidence 456777777774 5667777665444322221 1112 223333 144 468888888 356777877
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE-ECCCCcEEEEEeCCCc-----EEEEECCCCce
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS-QSPDGKLLIIVGDNPD-----GLLVDSMTGKT 339 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~-~sp~g~~l~~~~~dg~-----i~iwd~~~~~~ 339 (475)
+.+....-.-..+-. ..+ ..-+|.+.|+||.+|. +-.||..+.+-
T Consensus 358 ~~~W~~~a~M~~~R~-----------------------------~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRS-----------------------------DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCceeccCCccCccc-----------------------------cceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence 766433211111111 111 1237888899988854 66777765542
Q ss_pred EEEeecCCCCeEEEEE-ecCCCEEEEEeCCC------eEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 340 IASLCGHLDFSFASAW-HPNGVTFATGNQDK------TCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~-sp~g~~l~t~s~dg------~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
. ............+. .-+|.+.++|+.++ +|..||..+. ...+..+........ ++ .-++++.+.|+.+
T Consensus 409 ~-~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 409 T-PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFD 485 (571)
T ss_pred c-ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCcc
Confidence 1 11111112222222 22788888887654 5778887651 112222221111111 22 2367788888877
Q ss_pred C-----eEEEEECCCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEecCC
Q 011924 412 D-----FVHVYDVKSGYEKEQEIDFFGEISGISF-SPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g-----~i~iwd~~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~D~~ 455 (475)
+ +|..||..+.+-... ..-..+...+.. .-++...++|++|+.
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred CCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEecccCc
Confidence 6 377888877544332 111111112111 225666677888765
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.75 E-value=0.37 Score=42.80 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=79.4
Q ss_pred eEEECCCCcEEEEEeCC---------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC
Q 011924 310 HSSQSPDGKLLIIVGDN---------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNL 379 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d---------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~ 379 (475)
.-..+|+|++++-.-.+ |.++.|-. +..+..+...-+-...++|+.+.+.+... +.+-+|.-||..-.
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~ 190 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP 190 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC
Confidence 55789999985432222 23333322 22222222223344678998877766644 55677877884321
Q ss_pred -C-----ceEEEEecC----CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 380 -S-----ESVAVLKGN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 380 -~-----~~~~~~~~~----~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+ +.+..++.. ....-.++..-+|.+.++.-..++|..+|..+|+.+..+.-....|++++|--
T Consensus 191 tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 191 TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 1 122222211 01112445566788777777788999999999999999888888999999954
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.70 E-value=0.58 Score=44.28 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=75.0
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE----
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---- 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~---- 385 (475)
.+.-+++|++++++..-....-||.-...-...-..-...|.++.|.|++.+.+.+ +.|.|+.=+..........
T Consensus 149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~ 227 (302)
T PF14870_consen 149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIP 227 (302)
T ss_dssp EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-T
T ss_pred eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCC
Confidence 77888999988887555445567743221111222346789999999998877755 8888888873211111111
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe---ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+....-.+..++|.+++...|+|+.. . .+.....|+.=.... ...+.+..+.|.+.. .-++-+.+ |.||.|
T Consensus 228 ~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~---G~ll~~ 301 (302)
T PF14870_consen 228 IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQD---GVLLRY 301 (302)
T ss_dssp TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-ST---TEEEEE
T ss_pred cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCC---cEEEEe
Confidence 11122347899999998877777654 2 333444454322222 234678889997664 44555556 455654
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.53 E-value=0.77 Score=43.69 Aligned_cols=266 Identities=17% Similarity=0.136 Sum_probs=143.1
Q ss_pred ccccceeeecccceeEEecCCCeEEEecC-----------CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccce
Q 011924 122 RSVKSTILHFQLRNLVWATSKHDVYLMSH-----------FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 190 (475)
Q Consensus 122 ~~~~~~~~h~~lr~l~~~~~~~~v~~~~~-----------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (475)
.++.-.+.--.+-+++.++++..+|.+.- .-|..|+..+-....=+. +++..+ .......
T Consensus 27 ~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----iP~k~R-----~~~~~~~ 97 (342)
T PF06433_consen 27 GKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----IPPKPR-----AQVVPYK 97 (342)
T ss_dssp TEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE----ETTS-B-------BS--G
T ss_pred CcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe----cCCcch-----heecccc
Confidence 34444444445566777888888887532 236688877654432111 111101 1111122
Q ss_pred eEEEEEEcCcEEEEEec--CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CC
Q 011924 191 QVSTLAVKDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KY 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~ 267 (475)
....++.++++++.... .-.|.|-|+...+......+ -.|.-++.+++. -|.+-+.||++.-..+. .|
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-------PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-------PGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-------TSEEEEEEEETT--EEEEEETTSCEEEEEETSTS
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-------CCEEEEEecCCC--ceEEEecCCceEEEEECCCC
Confidence 34566668888777543 46677778876554422221 123334334433 36666789999988886 45
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeec
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCG 345 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~ 345 (475)
+...... .+ |.+... .. +..-+++..+..++..+..|.|+-.|+..... ...+.-
T Consensus 169 k~~~~~t---~~-F~~~~d-------------p~------f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 169 KEAQKST---KV-FDPDDD-------------PL------FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp SEEEEEE---EE-SSTTTS--------------B-------S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CEeEeec---cc-cCCCCc-------------cc------ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 5542221 01 111100 00 00334555566666678889888888765432 122211
Q ss_pred C----------CCCeEEEEEecCCCEEEEEeC--------CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCC-E
Q 011924 346 H----------LDFSFASAWHPNGVTFATGNQ--------DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-Y 404 (475)
Q Consensus 346 h----------~~~v~~~~~sp~g~~l~t~s~--------dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~ 404 (475)
- .+.-.-+++++..+.|++--. |+ .|-++|+.+ ++.+..+... .++.+|+.+.+.+ +
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~-~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLE-HPIDSIAVSQDDKPL 303 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEE-EEESEEEEESSSS-E
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCC-CccceEEEccCCCcE
Confidence 0 112234678875555554321 11 477778866 7777777742 3677999999876 5
Q ss_pred EEEE-cCCCeEEEEECCCCeeEEEEec
Q 011924 405 MATA-EPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 405 la~~-~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
|++. ..++.|.|||..+|+.++.+..
T Consensus 304 L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 5544 4578999999999998887764
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0094 Score=63.21 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 316 DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
.+..+++|++.|.+...|.... .+...-..-.++|.+++|+.+|++++.|-.+|.|.+||+.. +++++.+..+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4557888999999999887542 22222223467999999999999999999999999999976 778888877665555
Q ss_pred EE---EEccCCCEEEEEcCCCe
Q 011924 395 SI---RYTSDGRYMATAEPADF 413 (475)
Q Consensus 395 ~l---~~spdg~~la~~~~dg~ 413 (475)
++ .+..++..+.++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 44 33445556777777774
No 388
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.53 E-value=1 Score=46.61 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=108.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-Cce-------eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AIT-------NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v-------~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.+..|++++.+|.|+..|..+.+............ ... ..+++ .+.. ++.++.++.|...|..+++.
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~-v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGK-VFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCE-EEEEcCCCEEEEEECCCCCE
Confidence 35677777778889888988776554333211100 000 11222 1233 56677899999999999998
Q ss_pred eeeeeccccEE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEe------CCCcEEEEECCCCce
Q 011924 270 SKHFRFPWPVN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVG------DNPDGLLVDSMTGKT 339 (475)
Q Consensus 270 ~~~~~~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~------~dg~i~iwd~~~~~~ 339 (475)
+-.+.....-. + .+.-+| ++ .++++. .+|.|.-+|.++|+.
T Consensus 143 ~W~~~~~~~~~~~----------------------------~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 143 VWSKKNGDYKAGY----------------------------TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred Eeecccccccccc----------------------------cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 87665321100 0 011122 33 344443 267888889988887
Q ss_pred EEEeecCC-------------------------------CCeE-EEEEecCCCEEEEEeCC-----C-----------eE
Q 011924 340 IASLCGHL-------------------------------DFSF-ASAWHPNGVTFATGNQD-----K-----------TC 371 (475)
Q Consensus 340 ~~~l~~h~-------------------------------~~v~-~~~~sp~g~~l~t~s~d-----g-----------~v 371 (475)
+..+..-. ..++ .+++.|...+++.+... + .|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 76543211 0111 23666666666655422 2 45
Q ss_pred EEEECCCCCceEEEEec--CC-------CceEEEEEccCCC---EEEEEcCCCeEEEEECCCCeeE
Q 011924 372 RIWDLRNLSESVAVLKG--NL-------GAIRSIRYTSDGR---YMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~~--~~-------~~v~~l~~spdg~---~la~~~~dg~i~iwd~~~~~~~ 425 (475)
.-.|+++ ++..=.++. |. .+..-+....+|+ .++.+..+|.+.+.|..+|+.+
T Consensus 274 vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 274 VARDPDT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEcccc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5556655 444333332 21 1111223335776 7889999999999999999875
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.69 Score=42.68 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=117.0
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
.+....++++.| +|+.+.++++. +...-.|+=-..|+++++++..+ ...
T Consensus 82 ~g~~~nvS~LTy--np~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE-------------------------- 132 (316)
T COG3204 82 LGETANVSSLTY--NPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPE-------------------------- 132 (316)
T ss_pred ccccccccceee--CCCcceEEEec-CCCceEEEEecCCceEEEecccccCChh--------------------------
Confidence 344455899999 99999855554 55555566556789988887332 222
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE-------ee--cC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-------LC--GH-LDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-------l~--~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
.+.+..+|.++++--.++.+.++.+..+..+.. |. .+ ....-.++|.|..+.|..+-.-.-++||-+
T Consensus 133 ---~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 133 ---TIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred ---HeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 667777777777777788888777664432211 11 12 344668999998888888877777777776
Q ss_pred CCCCce--EEEEecC-------CCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccC---------CCeEE
Q 011924 377 RNLSES--VAVLKGN-------LGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISG 437 (475)
Q Consensus 377 ~~~~~~--~~~~~~~-------~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~ 437 (475)
...... ++....+ ...|.++.|.+ .+..|+-+-.++.+.-.|.. |..+..+..+. -..-+
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEG 288 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEG 288 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcce
Confidence 432211 1111111 13567888987 44566666667777778854 44444333222 13567
Q ss_pred EEEcCCCCeEEEE
Q 011924 438 ISFSPDTESLFIG 450 (475)
Q Consensus 438 l~fspdg~~l~~~ 450 (475)
++..++|..-+++
T Consensus 289 iamDd~g~lYIvS 301 (316)
T COG3204 289 IAMDDDGNLYIVS 301 (316)
T ss_pred eEECCCCCEEEEe
Confidence 8888888655544
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.45 E-value=1.7 Score=46.75 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-----ceeEEEEEeCC--------------CCCeEEEEEeCCCe
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSP--------------SGAVHFTASNNDCG 258 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~s~--------------~g~~~l~s~s~dg~ 258 (475)
-++.|+.++.++.|...|..+.+............. ....+.++-.| .+.. ++.++.|+.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r-V~~~T~Dg~ 271 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARR-IILPTSDAR 271 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCE-EEEecCCCe
Confidence 356777777788888888777665443322111110 11223332221 2233 667778999
Q ss_pred EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeC----------C
Q 011924 259 VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGD----------N 326 (475)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~----------d 326 (475)
|.-.|.++++.+..|.....+.+...-. +...+. ..+.-+| .+..+++++. +
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g--------~~~~g~--------~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMG--------TTPPGY--------YYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccC--------cCCCcc--------cccccCCEEECCEEEEEecccccccccCCC
Confidence 9999999999998877655554111000 000000 0111122 2345555532 6
Q ss_pred CcEEEEECCCCceEEEeecC---------CCC--------e-EEEEEecCCCEEEEEeC------------------CCe
Q 011924 327 PDGLLVDSMTGKTIASLCGH---------LDF--------S-FASAWHPNGVTFATGNQ------------------DKT 370 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h---------~~~--------v-~~~~~sp~g~~l~t~s~------------------dg~ 370 (475)
|.|+-+|.++|+.+..+..- .+. + ...++.|...+++.+.. .+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 88999999999988776420 000 1 12344554444444321 123
Q ss_pred EEEEECCCCCceEEEEec-CC--------CceEEEEEcc-CCC---EEEEEcCCCeEEEEECCCCeeEEE
Q 011924 371 CRIWDLRNLSESVAVLKG-NL--------GAIRSIRYTS-DGR---YMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 371 v~iwd~~~~~~~~~~~~~-~~--------~~v~~l~~sp-dg~---~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
|.-.|+++ ++..=.++. |. ....-+.+.. +|+ .++.++.+|.+.++|.++|+.+..
T Consensus 416 lvALD~~T-Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 416 LVALDATT-GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEEeCCC-CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 44455544 333322222 11 0111122322 664 788999999999999999987654
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.38 E-value=0.24 Score=49.86 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=72.8
Q ss_pred eEEECCC----CcEEEEEeCCCcEEEEECC-----CCceEEEeecC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 310 HSSQSPD----GKLLIIVGDNPDGLLVDSM-----TGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~----g~~l~~~~~dg~i~iwd~~-----~~~~~~~l~~h-----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
.++|.|- ...+++......|.+|-+. .++.+..-..+ .--...+.|||....|+.-.....-.+++
T Consensus 61 GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~s 140 (671)
T PF15390_consen 61 GLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPS 140 (671)
T ss_pred eeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeee
Confidence 6778773 3345556677889999875 23333222211 11234688999888887766655556778
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-CeEEEEECC
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DFVHVYDVK 420 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g~i~iwd~~ 420 (475)
++.....++.--...+-|.|.+|.+||+.|++|-.. =.-+|||-.
T Consensus 141 V~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 141 VHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 776555555544567899999999999887766433 356788844
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.0098 Score=63.06 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
.+..++.|+..|.|-..|+...-.+...-....++|++++|+.+|++++.|-.+|.|.+||+..+...+.+..|..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678889889999999986422222333335679999999999999999999999999999998888888777666555
Q ss_pred EE---EcCCCCeEEEEEecC
Q 011924 438 IS---FSPDTESLFIGVWDR 454 (475)
Q Consensus 438 l~---fspdg~~l~~~~~D~ 454 (475)
+. +..++..++++-.-|
T Consensus 178 vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCC
Confidence 44 334555555554333
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.37 E-value=0.17 Score=52.66 Aligned_cols=192 Identities=9% Similarity=0.045 Sum_probs=91.5
Q ss_pred EEEEcCcEEEEEecCc------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEEE
Q 011924 194 TLAVKDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDF 262 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~iw 262 (475)
++..++.+++.||.++ .+.++|..+......... .........+.+ ++. +++.|+.+ ..+..|
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~R~~~~~~~~----~~~-lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-IYPRKNPGVTVF----NNR-IYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-CcccccceEEEE----CCE-EEEEeCCCCCEecceEEEE
Confidence 4445788888888653 466677665443211111 111111122222 444 56777654 246667
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------CcEEEEECCC
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------PDGLLVDSMT 336 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------g~i~iwd~~~ 336 (475)
|..+.+....-..+.+.. + ..+..-++++.+.||.. ..+..||+.+
T Consensus 364 d~~~~~W~~~~~lp~~r~----~------------------------~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 364 KPGESKWREEPPLIFPRY----N------------------------PCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred cCCCCceeeCCCcCcCCc----c------------------------ceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 776654332211111111 0 11122367777777732 3578889876
Q ss_pred CceEEEeecCC-CCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEE
Q 011924 337 GKTIASLCGHL-DFSFASAWHPNGVTFATGNQD--------KTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 337 ~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~d--------g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
.+-. .+.... ......+...++...+.|+.+ ..+.+||..+ .+ .+..+.........+. -+++++
T Consensus 416 ~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~--~~~~iy 491 (534)
T PHA03098 416 NKWS-KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT-NKWTELSSLNFPRINASLCI--FNNKIY 491 (534)
T ss_pred Ceee-ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC-CceeeCCCCCcccccceEEE--ECCEEE
Confidence 5422 221111 111111222356666777542 2388888864 22 1111111111111222 267777
Q ss_pred EEEcCC-----CeEEEEECCCCe
Q 011924 406 ATAEPA-----DFVHVYDVKSGY 423 (475)
Q Consensus 406 a~~~~d-----g~i~iwd~~~~~ 423 (475)
+.|+.+ +.|.+||..+..
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCCE
Confidence 777654 468889987754
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.29 E-value=0.43 Score=49.69 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=67.3
Q ss_pred CCCcEEEEEeCCC-----cEEEEECCCCceEEEeec---CCCCeEEEEEecCCCEEEEEeCCC-----------------
Q 011924 315 PDGKLLIIVGDNP-----DGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGNQDK----------------- 369 (475)
Q Consensus 315 p~g~~l~~~~~dg-----~i~iwd~~~~~~~~~l~~---h~~~v~~~~~sp~g~~l~t~s~dg----------------- 369 (475)
-+|++.++||.++ .+..||..+.+- ..+.. .......++ -+|+..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 3678888888653 477899876542 22221 111111222 2677777776542
Q ss_pred ------eEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCC------CeEEEEECCC-Ce-eE-EEEeccCC
Q 011924 370 ------TCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------DFVHVYDVKS-GY-EK-EQEIDFFG 433 (475)
Q Consensus 370 ------~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------g~i~iwd~~~-~~-~~-~~~~~~~~ 433 (475)
+|..||..+. ...+..+....... ++ ..-+|++.+.|+.+ ..+..||..+ .+ .. ........
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777887641 11122111111111 11 22357777777654 2467899886 32 21 11111112
Q ss_pred CeEEEEEcCCCCeEEEEEecC
Q 011924 434 EISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~ 454 (475)
....+.+ +|+..++|+.|+
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred cceeEEE--CCEEEEEeeecc
Confidence 2222223 677888898887
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.16 E-value=1.2 Score=42.10 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=86.3
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF- 273 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~- 273 (475)
.+........++..|.|+ .-...+.... .......+.+..+.. +++|.+ +++++.-....-|+--...-..+.
T Consensus 110 ~~l~~~~~~l~~~~G~iy--~T~DgG~tW~-~~~~~~~gs~~~~~r--~~dG~~-vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 110 TALGDGSAELAGDRGAIY--RTTDGGKTWQ-AVVSETSGSINDITR--SSDGRY-VAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEEETTEEEEEETT--EE--EESSTTSSEE-EEE-S----EEEEEE---TTS-E-EEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred EEcCCCcEEEEcCCCcEE--EeCCCCCCee-EcccCCcceeEeEEE--CCCCcE-EEEECcccEEEEecCCCccceEEcc
Confidence 334444555555667654 3333343332 233344566777766 899985 666645445566765322122222
Q ss_pred eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE-CCCCceEEE----eecCCC
Q 011924 274 RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD-SMTGKTIAS----LCGHLD 348 (475)
Q Consensus 274 ~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~----l~~h~~ 348 (475)
.....+. +|.|+|++.+.+++ ..|.|+.=+ ...+..... +..-.-
T Consensus 184 ~~~~riq-----------------------------~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 184 NSSRRIQ-----------------------------SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp -SSS-EE-----------------------------EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred Cccceeh-----------------------------hceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 2456777 99999998877755 778887776 222222111 111122
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+..++|.|++...|+|+. |++ +..... ++.-+.... -...+..+.|.+..+-++.| .+|.|.=|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~-G~l-~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGS-GTL-LVSTDG-GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEEST-T-E-EEESST-TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCC-ccE-EEeCCC-CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 4789999998877776655 433 233333 443333332 23457788887665555554 57765444
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.15 E-value=0.83 Score=46.16 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=88.5
Q ss_pred eeEEEEEE-cCcEEEEEe---cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC----CeEEEEEeCCCeEEE
Q 011924 190 TQVSTLAV-KDKLLVAGG---FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNNDCGVRD 261 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g----~~~l~s~s~dg~v~i 261 (475)
++|..++| ||+.++-.. .+|++++=| .. .-+.-..|..+.| .|-+ .. +++......|.|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~-------viGqFEhV~GlsW--~P~~~~~~pa-LLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SK-------VIGQFEHVHGLSW--APPCTADTPA-LLAVQHKKHVTV 86 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---cc-------Eeeccceeeeeee--cCcccCCCCc-eEEEeccceEEE
Confidence 58999999 887666442 234332211 11 1122234788888 7643 23 555568899999
Q ss_pred EECCC-----Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 262 FDMGK-----YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 262 wd~~~-----~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
|-+.. .+.+.... ...+.-..|. ...|+|....|++-.....-.++++
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQ-------------------------GCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQ-------------------------GCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCC-------------------------cccccCCCceEEEEecCceeEeeee
Confidence 98742 22222111 1122222233 4569999998888766555556666
Q ss_pred CCC--ceEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECC
Q 011924 335 MTG--KTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDLR 377 (475)
Q Consensus 335 ~~~--~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iwd~~ 377 (475)
+.. +...-++ ..+.|.|.+|.+||+.|+.+-.. =.-.|||-.
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 532 2333444 56789999999999988776432 346788854
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.018 Score=50.71 Aligned_cols=105 Identities=9% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-Cc
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GA 392 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~ 392 (475)
-+..+++|+.+|.|.+|.... |........-...|- .+.-..++.+..+++++|.||.|++.- .+.+-....|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC
Confidence 356789999999999998762 111111111112222 222223667899999999999999954 66666665565 56
Q ss_pred eEEEEEccCCCEEEEE--cCCCeEEEEECCC
Q 011924 393 IRSIRYTSDGRYMATA--EPADFVHVYDVKS 421 (475)
Q Consensus 393 v~~l~~spdg~~la~~--~~dg~i~iwd~~~ 421 (475)
+..+..+..+++|+.+ |.+..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777888888 8888888888764
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.12 E-value=0.024 Score=37.02 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=26.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
+++|+|...++|.++.+|.|.++.+ +++.
T Consensus 16 ~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred EEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 9999999999999999999999998 4543
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.92 E-value=0.24 Score=44.02 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=84.3
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE--CCCCeeee-----eeeccccEE
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--MGKYQLSK-----HFRFPWPVN 280 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd--~~~~~~~~-----~~~~~~~v~ 280 (475)
.|.++.|-....- ......-++-+.++| +.+.+.+.++-+.+-+|..|| +.++.... .++...+..
T Consensus 138 ~g~Ly~~~~~h~v-----~~i~~~v~IsNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 138 GGELYSWLAGHQV-----ELIWNCVGISNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE 210 (310)
T ss_pred ccEEEEeccCCCc-----eeeehhccCCccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC
Confidence 3666666654321 222233456688999 777777788888999998887 66665432 111111100
Q ss_pred -eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-C
Q 011924 281 -VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-N 358 (475)
Q Consensus 281 -~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~ 358 (475)
.-|+ .+++..+|++.+++-..++|...|..+|+.+..+.-....++|+||-- +
T Consensus 211 ~~~PD-------------------------Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 211 SLEPD-------------------------GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred CCCCC-------------------------cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 1112 556777899999998999999999999999999998899999999953 3
Q ss_pred CCEEEE
Q 011924 359 GVTFAT 364 (475)
Q Consensus 359 g~~l~t 364 (475)
-..|++
T Consensus 266 ~d~~yv 271 (310)
T KOG4499|consen 266 LDILYV 271 (310)
T ss_pred ccEEEE
Confidence 334443
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.56 Score=43.27 Aligned_cols=143 Identities=13% Similarity=0.182 Sum_probs=95.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE-----
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV----- 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~----- 383 (475)
++.|+|+.+.|.+..+.+.-.|+=...|+.+.++.-. -...-.+.+.-++++.++--.++++.++.+......+
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~ 169 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ 169 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce
Confidence 9999999999999988888777776789988877521 1234567888888888888889999888875422211
Q ss_pred -EEEe---cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---EEEEecc-------CCCeEEEEEcCCCCeEEE
Q 011924 384 -AVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---KEQEIDF-------FGEISGISFSPDTESLFI 449 (475)
Q Consensus 384 -~~~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~-------~~~i~~l~fspdg~~l~~ 449 (475)
..+. ..+...-.++|+|....|..+-..+=+.||.+..+.. ......+ -..|+++.|.+....|++
T Consensus 170 ~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 170 KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1111 1134567899999887777777666677777653321 1111111 135788899886666655
Q ss_pred EEe
Q 011924 450 GVW 452 (475)
Q Consensus 450 ~~~ 452 (475)
-|.
T Consensus 250 LS~ 252 (316)
T COG3204 250 LSD 252 (316)
T ss_pred Eec
Confidence 443
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.92 E-value=0.28 Score=51.36 Aligned_cols=176 Identities=10% Similarity=0.050 Sum_probs=96.7
Q ss_pred eecccceeEEecC-CCeEEEecCCeEEEEecCCCCceE----EEeccCCCCCCCCCCCCccccccceeEEEEEE----cC
Q 011924 129 LHFQLRNLVWATS-KHDVYLMSHFSVIHWSSLTSSRSQ----VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KD 199 (475)
Q Consensus 129 ~h~~lr~l~~~~~-~~~v~~~~~~~v~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~ 199 (475)
.+.+.||-+.+.. .+.+|++..+.|.+|....-.... .+.+.-.........+.......++.|.-|.+ ..
T Consensus 35 ~~~gfKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 35 QGLGFKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred eccccccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 3444666666655 677788889999999864322211 11111000000000111111113455666655 67
Q ss_pred cEEEEEecCceEEEEeCCC-------C----CceE-----EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 200 KLLVAGGFQGELICKHLDR-------P----GVSF-----CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~-------~----~~~~-----~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|+++..+|.|.+|.+.. . .... ...........++.++++ +.....++|++++...|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh-~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIH-DYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEE-ecCcceEEEEecCCceEEEEE
Confidence 8899999999999996621 0 0000 001122234568999994 224445688888888888886
Q ss_pred CCCC--ee--eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----Cc-EEEEEeCCCcEEEEE
Q 011924 264 MGKY--QL--SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----GK-LLIIVGDNPDGLLVD 333 (475)
Q Consensus 264 ~~~~--~~--~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----g~-~l~~~~~dg~i~iwd 333 (475)
.... +. .....+...|- +++|-++ |. .|++++-.|.+.+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP-----------------------------~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIP-----------------------------NVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EeccccccccccccccccCCC-----------------------------eeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 5331 11 11112223333 7777653 32 777888899999888
Q ss_pred C
Q 011924 334 S 334 (475)
Q Consensus 334 ~ 334 (475)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=1.2 Score=40.93 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=87.5
Q ss_pred CCCCCeEEEEEeCCCe-EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE
Q 011924 243 SPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI 321 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~ 321 (475)
+|.-..-++.+-.-|+ ..++|....+....+.....-.|-. +=.|||+|.+|.
T Consensus 76 ~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyG--------------------------HGvfs~dG~~LY 129 (366)
T COG3490 76 HPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYG--------------------------HGVFSPDGRLLY 129 (366)
T ss_pred CCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeec--------------------------ccccCCCCcEEE
Confidence 6655444555544444 5678887776655554322222111 347999999998
Q ss_pred EEeC-----CCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEEEEeCC------------------CeEEEEECC
Q 011924 322 IVGD-----NPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQD------------------KTCRIWDLR 377 (475)
Q Consensus 322 ~~~~-----dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d------------------g~v~iwd~~ 377 (475)
..-. .|.|-|||.+.+ +.+..+..|.-....+.|.+||++++.++.. -.+.+.|..
T Consensus 130 ATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred eecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 7643 477889998854 4566788888788899999999999987531 123333332
Q ss_pred CCCceEEE--Ee--cCCCceEEEEEccCCCEEEEEc
Q 011924 378 NLSESVAV--LK--GNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 378 ~~~~~~~~--~~--~~~~~v~~l~~spdg~~la~~~ 409 (475)
+ +..+.. +. .+.-.|+.++..+||+.++.+-
T Consensus 210 t-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 210 T-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred c-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 2 222221 22 2345788899999998766543
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.79 E-value=0.92 Score=47.31 Aligned_cols=189 Identities=17% Similarity=0.137 Sum_probs=96.8
Q ss_pred EEEcCcEEEEEecC-c-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe-----EEEEE
Q 011924 195 LAVKDKLLVAGGFQ-G-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG-----VRDFD 263 (475)
Q Consensus 195 l~~~~~~lvsg~~d-g-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~-----v~iwd 263 (475)
...++.+.++||.+ | .+.+||............ ...........+ +|. +.++|+.||. |..||
T Consensus 329 ~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R~~~~v~~l----~g~-iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 329 AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKRSDFGVAVL----DGK-LYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred EEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCccccceeEEE----CCE-EEEEeccccccccccEEEec
Confidence 33388899999999 3 455666665553321111 111111222222 454 5888888864 55666
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeE-EECCCCcEEEEEeCC------CcEEEEECCC
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS-SQSPDGKLLIIVGDN------PDGLLVDSMT 336 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~-~~sp~g~~l~~~~~d------g~i~iwd~~~ 336 (475)
..+.+....-....+.. .. ...-+|.+.++||.+ .++..||..+
T Consensus 403 p~~~~W~~va~m~~~r~-----------------------------~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRS-----------------------------GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred CCCCcccccCCCCccee-----------------------------eeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 65543322211111111 11 223378888888754 3467888876
Q ss_pred CceEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEE
Q 011924 337 GKTIA--SLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 337 ~~~~~--~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
++-.. .+..-..... ++ .-++.+.+.|+.|+ +|..||.++ .+ .+..+......+..+. -+++..++
T Consensus 454 ~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~~--~~~~ly~v 528 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPET-NQWTMVAPMTSPRSAVGVVV--LGGKLYAV 528 (571)
T ss_pred CceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCC-CceeEcccCccccccccEEE--ECCEEEEE
Confidence 65321 1211111111 22 23677888888776 378888865 22 2221222222222222 25667778
Q ss_pred EcCCC-----eEEEEECCCCe
Q 011924 408 AEPAD-----FVHVYDVKSGY 423 (475)
Q Consensus 408 ~~~dg-----~i~iwd~~~~~ 423 (475)
|+.++ +|..||..+.+
T Consensus 529 GG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ecccCccccceeEEcCCCCCc
Confidence 87765 57778876654
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.15 Score=54.88 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=91.0
Q ss_pred eEEECCCCcEEEEEeCC--CcEEEEECCCCce-----EEEeec------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDN--PDGLLVDSMTGKT-----IASLCG------HLDFSFASAWHPN-GVTFATGNQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d--g~i~iwd~~~~~~-----~~~l~~------h~~~v~~~~~sp~-g~~l~t~s~dg~v~iwd 375 (475)
.+..++|+...++.... -.|..||+++-.. ..-|.. ......++.|.|. ....|....|+.|++.-
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence 56677787776665433 3678899874211 111221 2234567889984 33456677899999988
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc----CCCeEEEEEcCCCCeEEE
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF----FGEISGISFSPDTESLFI 449 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~fspdg~~l~~ 449 (475)
+......+..+. ....+++++|+|.|+.++.|-..|++.-|-. ++.....+... ...|.+++|-..-.+|++
T Consensus 185 ~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 185 TKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 855333344333 3456889999999999999999999998874 34443443321 367999999877666664
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.68 E-value=0.04 Score=35.97 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
...|..++|+|...+||.++.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346899999999999999999999999998 5543
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.62 E-value=2.6 Score=41.53 Aligned_cols=149 Identities=16% Similarity=0.241 Sum_probs=74.7
Q ss_pred EECCCCcEEEEEe------CCCcEEEEECCCCceEEEeecC---CCCeEEEEEecCCCEEEEEeC---------------
Q 011924 312 SQSPDGKLLIIVG------DNPDGLLVDSMTGKTIASLCGH---LDFSFASAWHPNGVTFATGNQ--------------- 367 (475)
Q Consensus 312 ~~sp~g~~l~~~~------~dg~i~iwd~~~~~~~~~l~~h---~~~v~~~~~sp~g~~l~t~s~--------------- 367 (475)
..-|+|+.++++- ..|.+.++|-.+.......+.. ...-+.+-|.|..+.++|+..
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 3457888887752 2356888888877777766542 345678889998899998753
Q ss_pred -----CCeEEEEECCCCCceEEEEecCC--CceEEEEEccC--CC--EEEEEcCCCeEEEEECCCCe----eEEEEecc-
Q 011924 368 -----DKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSD--GR--YMATAEPADFVHVYDVKSGY----EKEQEIDF- 431 (475)
Q Consensus 368 -----dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spd--g~--~la~~~~dg~i~iwd~~~~~----~~~~~~~~- 431 (475)
..++.+||+.. .+.++++.-.. ..+..++|..+ .. ++.++-.....++|....+. .+.++...
T Consensus 216 ~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHH-S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hcccccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 34799999977 78888877543 23557777543 43 33334333344444434443 12222211
Q ss_pred ----------------CCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 432 ----------------FGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 432 ----------------~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
.+-|+.|..|.|.++|.++.|=. |.+.+|.
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~--GdvrqYD 340 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH--GDVRQYD 340 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTT--TEEEEEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccC--CcEEEEe
Confidence 23479999999999999998843 4555553
No 407
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.47 E-value=4.6 Score=43.47 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=135.4
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE--eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS--RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
|.-..+ +..+|.++..||.+.-+.++.......- +...+ ..++.--.| +..++..++++ .|+-.-+|.-+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f--~sk~~t~vfa~-sdrP~viY~~n~k 661 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG-TQPISLRTF--SSKSRTAVFAL-SDRPTVIYSSNGK 661 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC-CCCcEEEEE--eeCCceEEEEe-CCCCEEEEecCCc
Confidence 444444 6789999999999988877654433211 11122 223333333 43444334444 4555556654332
Q ss_pred eeeeeee-----ccccEE--------eccCCceEEEEEEeeccc--ceEEEEeeeeeeEEECCCCcEEEEEeCC------
Q 011924 268 QLSKHFR-----FPWPVN--------VSSSYCIILLCRLLNFMT--EKVIICLLCLQHSSQSPDGKLLIIVGDN------ 326 (475)
Q Consensus 268 ~~~~~~~-----~~~~v~--------~s~~~~~l~~~~v~d~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d------ 326 (475)
-+...+. +..+.+ .+.++..+....+-++.. -+.++.....+.+++.+...++++.+..
T Consensus 662 Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 662 LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred EEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence 1111111 111111 111111111111111111 1112222244466776655555544321
Q ss_pred --------CcEEEEECCCCceEEEeecC-C---CCeEEEEEecC-CCEEEEEe----------CCCeEEEEECCCCCceE
Q 011924 327 --------PDGLLVDSMTGKTIASLCGH-L---DFSFASAWHPN-GVTFATGN----------QDKTCRIWDLRNLSESV 383 (475)
Q Consensus 327 --------g~i~iwd~~~~~~~~~l~~h-~---~~v~~~~~sp~-g~~l~t~s----------~dg~v~iwd~~~~~~~~ 383 (475)
..++++|-++-+.++..+-. . -.+.++.|+.| +.++++|. ..|.|.|+.+.. ...+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSL 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCce
Confidence 13556665554443322211 1 23455568776 66777764 246777777755 2323
Q ss_pred EEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 384 AVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 384 ~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+....+ .+++.++.. -+|++||.- +..|++|+..+.+.++....+..++..+...-.|..+++|--=+++ .+++
T Consensus 821 ~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si-tll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI-TLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE-EEEE
Confidence 332221 244444432 267777654 4589999999988888777888899999999999999988544443 4455
Q ss_pred EEe
Q 011924 462 YGR 464 (475)
Q Consensus 462 ~~~ 464 (475)
|.+
T Consensus 897 y~~ 899 (1096)
T KOG1897|consen 897 YKG 899 (1096)
T ss_pred Eec
Confidence 543
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=0.056 Score=47.69 Aligned_cols=100 Identities=9% Similarity=0.053 Sum_probs=68.8
Q ss_pred EEEEeCCCeEEEEECCCCeee-eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeee-EEECCCCcEEEEEeCC
Q 011924 250 FTASNNDCGVRDFDMGKYQLS-KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH-SSQSPDGKLLIIVGDN 326 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~-~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~d 326 (475)
+++|+.+|.|.+|........ ..+. ...++. + +..-.++.+..+++.+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~-----------------------------~~Ip~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID-----------------------------LGIPNGRDSSLGCVGAQD 123 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccce-----------------------------eccccccccceeEEeccC
Confidence 889999999999988632211 1111 122222 2 2223356678889999
Q ss_pred CcEEEEECCCCceEEEeecCC-CCeEEEEEecCCCEEEEE--eCCCeEEEEECCC
Q 011924 327 PDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATG--NQDKTCRIWDLRN 378 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~--s~dg~v~iwd~~~ 378 (475)
|.|+.|++.-++.+...-.|. .++.....+..+..++.+ |.|..++.|++..
T Consensus 124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 999999999888887777777 556666666667777777 7788888888754
No 409
>PRK10115 protease 2; Provisional
Probab=95.31 E-value=5.1 Score=42.98 Aligned_cols=193 Identities=12% Similarity=-0.010 Sum_probs=97.8
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
+..+.+ ||+|+.++++...+| .|++.|+.++..+...- ...-. .
T Consensus 129 l~~~~~--Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~-----------------------------~ 176 (686)
T PRK10115 129 LGGMAI--TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEP-----------------------------S 176 (686)
T ss_pred EeEEEE--CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcce-----------------------------E
Confidence 445566 999997555544444 57788887775321111 11112 6
Q ss_pred EEECCCCcEEEEEeCC------CcEEEEECCCC--ceEEEeecCCCCeEEEEEec-CCCEEEEEeC---CCeEEEEECCC
Q 011924 311 SSQSPDGKLLIIVGDN------PDGLLVDSMTG--KTIASLCGHLDFSFASAWHP-NGVTFATGNQ---DKTCRIWDLRN 378 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~d------g~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~---dg~v~iwd~~~ 378 (475)
++|+++++.|+.+..+ ..|+.+++.++ +....+........-..+.+ ++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 7899998877666432 36778888877 33444443333333233444 7777665443 45688888533
Q ss_pred C-CceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCCeeEEEEecc-C-CCeEEEEEcCCCCeEEEEEe
Q 011924 379 L-SESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDF-F-GEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 379 ~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~l~fspdg~~l~~~~~ 452 (475)
. ..+...+....+....+. +..+.+++.... ...|...++.+......+..+ . ..|..+.++ +++|+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER 333 (686)
T ss_pred CCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence 1 232223332223332322 222333332221 223444455421122334444 2 367777777 446665555
Q ss_pred cCCcceEEEE
Q 011924 453 DRTYGSLLEY 462 (475)
Q Consensus 453 D~~~~~ll~~ 462 (475)
++....+..+
T Consensus 334 ~~g~~~l~~~ 343 (686)
T PRK10115 334 QRGLTSLRQI 343 (686)
T ss_pred eCCEEEEEEE
Confidence 4444444333
No 410
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.39 Score=47.44 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=91.4
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC------
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG------ 317 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g------ 317 (475)
.+.+.++..++.-..++-.|++.|+.+........+ -+.+.|..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv------------------------------vVqy~p~~kf~qmt 526 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV------------------------------VVQYNPYFKFQQMT 526 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc------------------------------eeecCCchhHHhcC
Confidence 344555556667777888888888888776633222 12444432
Q ss_pred -cEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEEe----cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC
Q 011924 318 -KLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWH----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 318 -~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~s----p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
..-++|-.+..|.-.|.+ .|..+..-+ ..+++..-.|+ ....++|.|+..|-||+||--. .+....+++...
T Consensus 527 ~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~ 604 (776)
T COG5167 527 DEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGD 604 (776)
T ss_pred ccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCccccc
Confidence 122344455667777776 343333222 23333333333 3556899999999999999643 455566677777
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+|..+..+.+|+++++.+.. .+.+-|++
T Consensus 605 aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 605 AIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 89999999999988877754 57777764
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.20 E-value=5.6 Score=42.87 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCC--C--
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPD--T-- 444 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspd--g-- 444 (475)
.||+++-. ..+..+.... .++..+.+.+...++.|+.++.+...++..+....+. .....+|.|+.++|- +
T Consensus 471 ~iRl~ss~---~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA---GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch---hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC
Confidence 47777653 2344444333 4444445555556777777777777776655422222 224578999999984 2
Q ss_pred --CeEEEEEecCCcceEE
Q 011924 445 --ESLFIGVWDRTYGSLL 460 (475)
Q Consensus 445 --~~l~~~~~D~~~~~ll 460 (475)
+++++|.|+..+..+.
T Consensus 547 ~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILT 564 (1096)
T ss_pred cceEEEEEeecceEEEEE
Confidence 3789999987765444
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=95.17 E-value=3.3 Score=40.08 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=60.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++.+.|+++.++++ ..|.+++-....|........+ ...+.++.+.|++..++++ .+|.+. ..... ++.-..
T Consensus 219 ~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~-G~tW~~ 294 (334)
T PRK13684 219 SMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG-GKTWEK 294 (334)
T ss_pred eeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC-CCCCeE
Confidence 88899999877765 5576543334455443322211 2347889999988766655 566544 33322 333222
Q ss_pred Ee---cCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 386 LK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 386 ~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.. .-......+.|..+++.+++ +..|.|.-|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 295 DPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 22 22235777888777766554 4577777665
No 413
>PHA03098 kelch-like protein; Provisional
Probab=95.15 E-value=0.94 Score=47.08 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=64.1
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCC-Cc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRNL-SE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~d------g~v~iwd~~~~-~~ 381 (475)
++++.+.||.+ ..+..||..+.+-. .... +...-.+++ .-+++..+.|+.. ..+..||..+. ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67788888764 34677887765422 2211 111111222 2366777777632 35888998641 11
Q ss_pred eEEEEecCCCceEEEEEccCCCEEEEEcCC--------CeEEEEECCCCeeEEEEe-cc-CCCeEEEEEcCCCCeEEEEE
Q 011924 382 SVAVLKGNLGAIRSIRYTSDGRYMATAEPA--------DFVHVYDVKSGYEKEQEI-DF-FGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~spdg~~la~~~~d--------g~i~iwd~~~~~~~~~~~-~~-~~~i~~l~fspdg~~l~~~~ 451 (475)
.+..+....... + +...++++.+.|+.+ ..+.+||..+.+-...-. .. ......+.+ +++.++.|+
T Consensus 420 ~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 420 KGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred ecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 111111111111 1 222356666777643 238899988764332111 11 111222222 666777776
Q ss_pred ecC
Q 011924 452 WDR 454 (475)
Q Consensus 452 ~D~ 454 (475)
.++
T Consensus 496 ~~~ 498 (534)
T PHA03098 496 DKY 498 (534)
T ss_pred CcC
Confidence 653
No 414
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.10 E-value=3.1 Score=39.30 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=93.7
Q ss_pred eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-----cEEEEE-eCCCcEEE
Q 011924 258 GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-----KLLIIV-GDNPDGLL 331 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-----~~l~~~-~~dg~i~i 331 (475)
.|-+||+.+.+.++.+..+..+.- .+..+. .+.+.... .++..+ ...+.|.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~ln--------------------dl~VD~~~~~~~~~~aYItD~~~~glIV 92 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLN--------------------DLVVDVRDGNCDDGFAYITDSGGPGLIV 92 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEE--------------------EEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcc--cccccc--------------------eEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence 577789999998888876544431 111111 44444411 233333 23457999
Q ss_pred EECCCCceEEEeecC-------------------CCCeEEEEEec---CCCEEEEEeCCCeEEEEECC-----CCC----
Q 011924 332 VDSMTGKTIASLCGH-------------------LDFSFASAWHP---NGVTFATGNQDKTCRIWDLR-----NLS---- 380 (475)
Q Consensus 332 wd~~~~~~~~~l~~h-------------------~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~-----~~~---- 380 (475)
+|+.+++..+.+..+ .+.+..++.+| +++.|+-....+ -++|-+. +..
T Consensus 93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~ 171 (287)
T PF03022_consen 93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDA 171 (287)
T ss_dssp EETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HH
T ss_pred EEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCcccccc
Confidence 999998876655432 12366667766 666777665443 2333321 100
Q ss_pred ----ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe---eEE-EEecc--CCCeEEEEEcC--CCCeEE
Q 011924 381 ----ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---EKE-QEIDF--FGEISGISFSP--DTESLF 448 (475)
Q Consensus 381 ----~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~---~~~-~~~~~--~~~i~~l~fsp--dg~~l~ 448 (475)
..++.+-...+....++++++|.+.++--..+.|..|+..+.. ... ..... -..+.++.+.+ +|...+
T Consensus 172 ~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 172 QALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp H-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred ccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 1123332222355688999999988888889999999987622 111 11222 35789999999 776555
Q ss_pred EE
Q 011924 449 IG 450 (475)
Q Consensus 449 ~~ 450 (475)
.+
T Consensus 252 ~s 253 (287)
T PF03022_consen 252 LS 253 (287)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.06 E-value=2 Score=41.56 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=76.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce---EEEee----cCCCCeEEEEEecC----CCEEEEEeCC--------Ce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASLC----GHLDFSFASAWHPN----GVTFATGNQD--------KT 370 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~l~----~h~~~v~~~~~sp~----g~~l~t~s~d--------g~ 370 (475)
.|+|.|+|+++++ ...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+.. ..
T Consensus 6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 8899999987665 5699999999 44443 33331 23456789999994 4433333321 13
Q ss_pred EEEEECCCCC------c-eEEEEec---CCCceEEEEEccCCCEEEEEcCC-------------CeEEEEECCCCee---
Q 011924 371 CRIWDLRNLS------E-SVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-------------DFVHVYDVKSGYE--- 424 (475)
Q Consensus 371 v~iwd~~~~~------~-~~~~~~~---~~~~v~~l~~spdg~~la~~~~d-------------g~i~iwd~~~~~~--- 424 (475)
|.-|...... + .+..+.. .......|+|.|||.+.++.+.. |.|.=.+.. |..
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~d 162 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPAD 162 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-TT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCCC
Confidence 4444443210 1 1122222 22345679999999755554422 223333322 210
Q ss_pred ----------EEEEeccCCCeEEEEEcCCCCeEEEE-EecCCcceEEEEEeecceeee
Q 011924 425 ----------KEQEIDFFGEISGISFSPDTESLFIG-VWDRTYGSLLEYGRCRNYSYL 471 (475)
Q Consensus 425 ----------~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~~~~ll~~~~~~~~~~l 471 (475)
...+..-.....+++|+|....|+++ ......-++-....+.++.|-
T Consensus 163 nP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp STTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred CccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 01111112345689999993344444 222233455555566666543
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=95.01 E-value=1.6 Score=44.74 Aligned_cols=186 Identities=10% Similarity=0.014 Sum_probs=88.0
Q ss_pred EcCcEEEEEecCc-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCee
Q 011924 197 VKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQL 269 (475)
Q Consensus 197 ~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~ 269 (475)
.++.++++||.++ .+..||............ .........+.+ +|. +.+.|+.+ .++..|+..+.+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m-~~~r~~~~~v~~----~~~-iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM-NSPRLYASGVPA----NNK-LYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC-CchhhcceEEEE----CCE-EEEECCcCCCCceEEEECCCCeE
Confidence 3667778888653 455677665443211111 111111122222 454 46676643 3577777665543
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC---cEEEEECCCCceEEEeecC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg---~i~iwd~~~~~~~~~l~~h 346 (475)
...-..+.+... .....-+|++.++||.++ .+..||.++.+-. ....-
T Consensus 344 ~~~~~l~~~r~~----------------------------~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m 394 (480)
T PHA02790 344 VNMPSLLKPRCN----------------------------PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPST 394 (480)
T ss_pred EECCCCCCCCcc----------------------------cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCC
Confidence 322221211110 112233678888887543 4668887765422 11110
Q ss_pred C-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCC-----CeEEEEE
Q 011924 347 L-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYD 418 (475)
Q Consensus 347 ~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd 418 (475)
. ......+..-+++..+.| |.+.+||.++ .+ .+..+.........+. -+|++.++|+.+ ..|..||
T Consensus 395 ~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~-~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVG---RNAEFYCESS-NTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CCccccceEEEECCEEEEEC---CceEEecCCC-CcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEE
Confidence 0 111111223366666666 3577888864 22 1222221112222222 367777777754 3577777
Q ss_pred CCCCe
Q 011924 419 VKSGY 423 (475)
Q Consensus 419 ~~~~~ 423 (475)
..+++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 76653
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.86 E-value=4.6 Score=40.09 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=55.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE----ccC----------------CCEE-EE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY----TSD----------------GRYM-AT 407 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----spd----------------g~~l-a~ 407 (475)
.+.+++.+|++++.|+...=|.|.++|+.+ ...++.+++...+= +.| .+. ..+| +-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 467899999999988887778999999976 77788888765431 111 111 1133 34
Q ss_pred EcCCCeEEEEECCCCeeEEEEe
Q 011924 408 AEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+-.-|.|-||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5668899999999988776654
No 418
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.61 E-value=4.8 Score=39.24 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=89.0
Q ss_pred ceEEEEeCCCCCceEEEeee-----cCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECC---C----Ceeeeeeec
Q 011924 209 GELICKHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG---K----YQLSKHFRF 275 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~---~----~~~~~~~~~ 275 (475)
..|++|.++........... ......+..++++.++ +|..+++....+|.+..|.+. . .++++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 47999988753332211110 1112346788888776 567667778899999888763 2 246778877
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-----CceEEEeec--CCC
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG--HLD 348 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~l~~--h~~ 348 (475)
...+. .+........|.++-.+.-|.-|+... ++.+....+ ...
T Consensus 207 ~sQ~E-----------------------------GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~a 257 (381)
T PF02333_consen 207 GSQPE-----------------------------GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVA 257 (381)
T ss_dssp SS-EE-----------------------------EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S
T ss_pred CCcce-----------------------------EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccccc
Confidence 77777 888888888888898888888888762 222322222 345
Q ss_pred CeEEEEEec--CC-CEEEEEeC-CCeEEEEECCCCCceEEEE
Q 011924 349 FSFASAWHP--NG-VTFATGNQ-DKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 349 ~v~~~~~sp--~g-~~l~t~s~-dg~v~iwd~~~~~~~~~~~ 386 (475)
.+-.+++-. ++ .||+.+++ +++..||+.+.....+..+
T Consensus 258 DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 258 DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp -EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 677777743 33 35555555 7799999987544444444
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.44 E-value=1.1 Score=47.89 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=54.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECC----------CCce---EEEe--------ecCCCCeEEEEEecC---CCEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSM----------TGKT---IASL--------CGHLDFSFASAWHPN---GVTFATG 365 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~----------~~~~---~~~l--------~~h~~~v~~~~~sp~---g~~l~t~ 365 (475)
.+.+||+|++|+..|..| |.|..+. .|+. .+++ ..+...|..+.|||. +..|+.-
T Consensus 89 ~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 89 QISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 899999999999998876 4444432 1111 1111 124457889999994 5889999
Q ss_pred eCCCeEEEEECCCCCceEEEEe
Q 011924 366 NQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
..|+++|+||+.....+..++.
T Consensus 168 tsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 168 TSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred ecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999987555555443
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.27 E-value=1.3 Score=47.25 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=53.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECC-CCC--------c---eEEEE--------ecCCCceEEEEEccC---CCEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLR-NLS--------E---SVAVL--------KGNLGAIRSIRYTSD---GRYM 405 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~-~~~--------~---~~~~~--------~~~~~~v~~l~~spd---g~~l 405 (475)
.|..+.++|+|+++|..+..|. .|-.+- ..+ + ..+++ ......|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5778899999999999888664 443332 111 1 11111 123457889999996 4799
Q ss_pred EEEcCCCeEEEEECCCCeeEE
Q 011924 406 ATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~~~~ 426 (475)
++-..|+++++||+.....+.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred EEEecCCEEEEEecCCCCCCe
Confidence 999999999999997654333
No 421
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.26 E-value=9.8 Score=41.30 Aligned_cols=74 Identities=20% Similarity=0.032 Sum_probs=53.3
Q ss_pred CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE----e-----------c----cCCCeEEEEEcCCCCeEEEEE
Q 011924 391 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE----I-----------D----FFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 391 ~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~----~-----------~----~~~~i~~l~fspdg~~l~~~~ 451 (475)
+.|.++....-+.+++.+-.||+|.++|-.+.+.+... . + ....+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999998776433322 0 0 011344688999999999999
Q ss_pred ecCCcceEEEEEe
Q 011924 452 WDRTYGSLLEYGR 464 (475)
Q Consensus 452 ~D~~~~~ll~~~~ 464 (475)
.|+.+..++...+
T Consensus 340 ~~~~~~~~~~~~~ 352 (753)
T PF11635_consen 340 EDGKTKKLLYMMR 352 (753)
T ss_pred cCCCceeeEEeec
Confidence 9998875555443
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.15 E-value=3.2 Score=43.29 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECC-----CC--
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLR-----NL-- 379 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~-----~~-- 379 (475)
-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. +|+.+++.+..+.|.+|--. +.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 34445555555555556689999998877443222 3467899999964 88888888888999988531 11
Q ss_pred -CceEEEE--ecCC-CceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 380 -SESVAVL--KGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 380 -~~~~~~~--~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+++.+ ..+. .+|....|.++|.+++.++ +.+.|+|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1233333 2222 4788999999997655443 46888873
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.96 Score=49.09 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=67.2
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
..++.| +|.-....+.+..|+.|++..+.. .+.+..+......+ |++|
T Consensus 158 ~~~~~w--nP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~T-----------------------------av~W 206 (1405)
T KOG3630|consen 158 QLKNVW--NPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQT-----------------------------AVLW 206 (1405)
T ss_pred cccccc--cCCccchhhhhccccchhhhhhhhhhhhhcccCccccee-----------------------------eEEe
Confidence 344555 776655577778899999987743 23333445555666 9999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeec----CCCCeEEEEEecCCCEEEE
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG----HLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~----h~~~v~~~~~sp~g~~l~t 364 (475)
+|.|+.+++|-..|++.-|-.. +.....+.+ ....|.+++|-..-.++++
T Consensus 207 SprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 207 SPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9999999999999999888753 443334432 1367899999765555443
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.94 E-value=2.8 Score=43.67 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC--CCCc
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS--PDGK 318 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s--p~g~ 318 (475)
|.-++. .++.+....+.|||...+.+-..-. ....|. .+.|. |+|.
T Consensus 38 ss~~k~-a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-----------------------------dLDWtst~d~q 87 (631)
T PF12234_consen 38 SSIKKI-AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-----------------------------DLDWTSTPDGQ 87 (631)
T ss_pred cccCcE-EEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-----------------------------eceeeecCCCC
Confidence 555553 5555556689999998877544333 366777 77775 6899
Q ss_pred EEEEEeCCCcEEEEECC-----CC----ceEEEe--ecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 319 LLIIVGDNPDGLLVDSM-----TG----KTIASL--CGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~-----~~----~~~~~l--~~h~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+++.|-...|.++--. .. .++..+ ..|+ .+|.+..|.++|.+++.++ ..+.|+|-.
T Consensus 88 siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 99998888899988542 11 123322 3344 5789999999997666543 368888753
No 425
>PLN02153 epithiospecifier protein
Probab=93.91 E-value=6.6 Score=38.08 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=17.3
Q ss_pred EEEcCcEEEEEecC-------ceEEEEeCCCCCc
Q 011924 195 LAVKDKLLVAGGFQ-------GELICKHLDRPGV 221 (475)
Q Consensus 195 l~~~~~~lvsg~~d-------g~i~vw~~~~~~~ 221 (475)
...++.+++.||.+ ..+.++|+.....
T Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 62 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW 62 (341)
T ss_pred EEECCEEEEECCccCCCCceeCcEEEEECCCCEE
Confidence 34477788888863 2567777766543
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.55 E-value=8.1 Score=37.94 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=36.3
Q ss_pred eEEECCCCcEEEEEeCC-------------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 310 HSSQSPDGKLLIIVGDN-------------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d-------------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
.++|.|+|.+.++.+.. +.|.-++..+++. ..+.........++|+|+|+++++-+.+
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 77899999877665521 3455555544443 3333223446789999999988775543
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.43 E-value=0.43 Score=30.23 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCeEEEEECCC
Q 011924 348 DFSFASAWHPNG---VTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 348 ~~v~~~~~sp~g---~~l~t~s~dg~v~iwd~~~ 378 (475)
+.++++.|+|.+ .+|+.+-.-+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999844 4888888889999999985
No 428
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.35 E-value=8.3 Score=37.44 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=20.7
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.+||..+.+-.....-....-...+..-+++.+++|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888765432211111111122233445777888887654
No 429
>PLN02193 nitrile-specifier protein
Probab=93.07 E-value=12 Score=38.29 Aligned_cols=105 Identities=6% Similarity=-0.101 Sum_probs=52.8
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeecC----CCC-eEEEEEecCCCEEEEEeCC----CeEEEEECCCCCc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCGH----LDF-SFASAWHPNGVTFATGNQD----KTCRIWDLRNLSE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~h----~~~-v~~~~~sp~g~~l~t~s~d----g~v~iwd~~~~~~ 381 (475)
++++.+.|+.+ ..+..||+.+.+-. .+... ... -.+++ .-++++++.++.+ ..+.+||+.+ .+
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t-~~ 354 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQ-DK 354 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCC-CE
Confidence 56677777654 34677887765422 22110 001 11122 2256777777655 3588999865 32
Q ss_pred eEEEEec----CCCceEEEEEccCCCEEEEEcCC--------------CeEEEEECCCCee
Q 011924 382 SVAVLKG----NLGAIRSIRYTSDGRYMATAEPA--------------DFVHVYDVKSGYE 424 (475)
Q Consensus 382 ~~~~~~~----~~~~v~~l~~spdg~~la~~~~d--------------g~i~iwd~~~~~~ 424 (475)
- ..+.. ........+..-++++++.|+.. +.+.+||+.+..-
T Consensus 355 W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 355 W-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred E-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 2 22211 11111111222356777777743 2488999887643
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=93.03 E-value=7.1 Score=39.94 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCC--CcEEEEECCCCceEEEeecCCCCe-EEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEE--EE
Q 011924 315 PDGKLLIIVGDN--PDGLLVDSMTGKTIASLCGHLDFS-FASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVA--VL 386 (475)
Q Consensus 315 p~g~~l~~~~~d--g~i~iwd~~~~~~~~~l~~h~~~v-~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~--~~ 386 (475)
-+|.+.++||.+ ..+..||..+++- ..+..-..+. ...+..-+|+..+.|+.++ ++..||.++ .+-.. .+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAW-VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH-DQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeE-EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC-CEEEeCCCC
Confidence 467777888753 3577888765532 2222111111 1111223677777777543 477888764 22111 11
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-cc-CCCeEEEEEcCCCCeEEEEEec
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DF-FGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~l~fspdg~~l~~~~~D 453 (475)
....... ++ ..-+|++.+.|+ .+.+||..+.+-..... .+ ......+. -+|+..++|+.+
T Consensus 395 ~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~ 456 (480)
T PHA02790 395 YYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFY 456 (480)
T ss_pred CCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcC
Confidence 1111111 11 233566666664 47789987764332211 11 11222222 366777777765
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.94 E-value=0.011 Score=57.44 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=94.7
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t-~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
...|.|.+.-+++++.+..+..|| +.|+....+. .++....++|.-++..++. +-..+.+.+||+.........+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 456888777788888888888898 4455443333 4556677888887765544 456789999999642211111222
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEE
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
...-.-+.|++.+..++.+...+.+.|++..+.+.....-.|..++..++|.+.+..+.
T Consensus 117 -~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 117 -TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred -cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 12222378999999999999999999999877655544445889999999999875544
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.89 E-value=1.6 Score=43.41 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCcEEEE-EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC--------CEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 316 DGKLLII-VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG--------VTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 316 ~g~~l~~-~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g--------~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
+..++.. ++....++-.|+..|+.+..+..|.+- -+.|.|.- ..|+--|+ ..|.-.|.|..+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecc-cceEEecccccCCceeee
Confidence 4444443 455667888899999999998877664 46777742 34444444 445555666544333332
Q ss_pred ecCCCceEEEEEcc----CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 387 KGNLGAIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 387 ~~~~~~v~~l~~sp----dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.. ...++.-.||. ..-++|+|+..|-|++||--.-.....+.+....|-.+..+.+|.+|++.+..
T Consensus 555 es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 21 11222333332 23489999999999999943323333445566789999999999999988753
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.88 E-value=9.5 Score=36.85 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred eEEEEecCCCceEEEEEcc-------CCCEEEEEcCCCeEEEEECCCCeeEEEE---e-ccCCCeEEEEEcCCCCeEEEE
Q 011924 382 SVAVLKGNLGAIRSIRYTS-------DGRYMATAEPADFVHVYDVKSGYEKEQE---I-DFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~sp-------dg~~la~~~~dg~i~iwd~~~~~~~~~~---~-~~~~~i~~l~fspdg~~l~~~ 450 (475)
++..+..| .++..+.|-+ .|.++++.-..+.|....+..+..+... . ....++.++++.|||...++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 44444444 4566777753 4456666666678888888755333222 2 233489999999999888887
Q ss_pred EecCCc
Q 011924 451 VWDRTY 456 (475)
Q Consensus 451 ~~D~~~ 456 (475)
..++.+
T Consensus 324 d~~G~i 329 (331)
T PF07995_consen 324 DSDGKI 329 (331)
T ss_dssp -TTTTE
T ss_pred CCCCeE
Confidence 766544
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.48 E-value=13 Score=37.42 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=56.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEee-----cCCCCeEEEEEecCC------CEEEEEe----------
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC-----GHLDFSFASAWHPNG------VTFATGN---------- 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~-----~h~~~v~~~~~sp~g------~~l~t~s---------- 366 (475)
.|+|.|+|++|++--..|.|++++..++.. +..+. .-.+....++++|+- ++|+...
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~ 113 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP 113 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence 778999998777664469999998655432 22121 125678899999874 2444432
Q ss_pred CCCeEEEEECCCC----CceEEEEecC----CCceEEEEEccCCCEEEEEcC
Q 011924 367 QDKTCRIWDLRNL----SESVAVLKGN----LGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 367 ~dg~v~iwd~~~~----~~~~~~~~~~----~~~v~~l~~spdg~~la~~~~ 410 (475)
....|.-|.+... ......+... ...-..|+|.|||.+.++.+.
T Consensus 114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1223444544311 1112222211 112357889999986654443
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.42 E-value=5 Score=42.35 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------C-------------ceEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCeEEE
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT-------G-------------KTIASLCGHLDFSFASAWH--PNGVTFATGNQDKTCRI 373 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~l~~h~~~v~~~~~s--p~g~~l~t~s~dg~v~i 373 (475)
....|+++.+||.|.+|.+.+ . ++-..+. -...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556788899999999997631 0 0111222 23468899999 78899999988888888
Q ss_pred EECCCCCc--eEEEEecCCCceEEEEEccCC---C---EEEEEcCCCeEEEEEC
Q 011924 374 WDLRNLSE--SVAVLKGNLGAIRSIRYTSDG---R---YMATAEPADFVHVYDV 419 (475)
Q Consensus 374 wd~~~~~~--~~~~~~~~~~~v~~l~~spdg---~---~la~~~~dg~i~iwd~ 419 (475)
|-...... ....-..+...|.+|.|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 76543111 111111245578899996643 2 7888888999998887
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.31 E-value=1.6 Score=43.22 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=55.2
Q ss_pred eeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec----CCC-----------------EEEEEe
Q 011924 308 LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP----NGV-----------------TFATGN 366 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp----~g~-----------------~l~t~s 366 (475)
+.+++.+|.+++.|+...-|.|.|+|+.++..++.++|..+.- +.|-. ..+ +++-+-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4589999999999988888999999999999998888865532 22211 111 234455
Q ss_pred CCCeEEEEECCCCCceEEEEe
Q 011924 367 QDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~ 387 (475)
.-|.|.||.+++ +..+..+.
T Consensus 388 rRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCC-CCEEEEEE
Confidence 678999999987 55555444
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=4 Score=40.08 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=87.9
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---ceE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---ESV 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~~~ 383 (475)
.+-|.-..+.++ +...|.+.-|-+... -++..-....++|.++.||||.+.+|.--.+.+|.+++..... ...
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443334333 334445555654422 2222223356799999999999999999999999999984211 122
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.+.+.....|....|+.+ +-+|.-+..| +-+|-+-.. ..++....|...|.-..|.|+.+.++.++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 233344456889999876 6677776666 677765432 33444556777888888999887766543
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.12 E-value=12 Score=36.12 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=84.3
Q ss_pred eeeEEECCCCcEEEEEeCCCc------EEEEECCC--C--ceEE-----EeecCCC--------CeEEEEEecCCCEEEE
Q 011924 308 LQHSSQSPDGKLLIIVGDNPD------GLLVDSMT--G--KTIA-----SLCGHLD--------FSFASAWHPNGVTFAT 364 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~------i~iwd~~~--~--~~~~-----~l~~h~~--------~v~~~~~sp~g~~l~t 364 (475)
++.+.+.|++..+++.+++|. ++.+.+.. + ..+. .+..-.+ -.-++++.++|.++++
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is 101 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWIS 101 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEE
Confidence 348889976667777788887 66666543 1 1111 1221112 2337888778888888
Q ss_pred EeCC------CeEEEEECCCCCceEEEEe---------------cCCCceEEEEEccCCCEEEEEcC-----CC------
Q 011924 365 GNQD------KTCRIWDLRNLSESVAVLK---------------GNLGAIRSIRYTSDGRYMATAEP-----AD------ 412 (475)
Q Consensus 365 ~s~d------g~v~iwd~~~~~~~~~~~~---------------~~~~~v~~l~~spdg~~la~~~~-----dg------ 412 (475)
.-.+ ..|..++.. ++....+. ..+...-+++++|+|+.|+++.. |+
T Consensus 102 ~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 102 SEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred eCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 7667 788888864 44333321 12346789999999996655432 22
Q ss_pred -----eEEEEECCC-CeeEEEE--ec-------cCCCeEEEEEcCCCCeEEE
Q 011924 413 -----FVHVYDVKS-GYEKEQE--ID-------FFGEISGISFSPDTESLFI 449 (475)
Q Consensus 413 -----~i~iwd~~~-~~~~~~~--~~-------~~~~i~~l~fspdg~~l~~ 449 (475)
.|..||..+ +....++ .. ....|+.+.+-+++++|+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 3222222 11 2457899999999987764
No 439
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=10 Score=35.29 Aligned_cols=225 Identities=15% Similarity=0.062 Sum_probs=124.7
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--- 267 (475)
--.++.+.|++...+..+.-+.+.|+..+......-...........+++ +|++ ...+..|+.+.+-|+...
T Consensus 130 yaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I----SGn~-AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 130 YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI----SGNY-AYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred eEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE----ecCe-EEEEEeCCCeEEEEccCCCCC
Confidence 45567779999999987766778899877655433344444444566766 4665 445558888999998653
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-C
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-H 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h 346 (475)
.++.+......+. ++..+++-.+++.. +.-+.+.|..+.+....+-. .
T Consensus 205 vli~~~n~g~g~~-----------------------------sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsye 253 (370)
T COG5276 205 VLIGSYNTGPGTY-----------------------------SVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYE 253 (370)
T ss_pred eEEEEEecCCceE-----------------------------EEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccc
Confidence 3444444443455 66777766655554 33478888776664444322 1
Q ss_pred CCCeEEE-EEecCCCEEEEEeCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 347 LDFSFAS-AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 347 ~~~v~~~-~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+..+.++ .+.-.+++...+-.+.-+.+-|+.++..+... +.........++.+ |.++..+..+ ...+.+....+
T Consensus 254 t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s 330 (370)
T COG5276 254 TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPS 330 (370)
T ss_pred cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChh
Confidence 2222222 23335677777777777888888775543321 11111133344443 4566666554 45555544322
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..-...+....+.+.+.+-+.+.+.+.-+++
T Consensus 331 ~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~ 361 (370)
T COG5276 331 MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG 361 (370)
T ss_pred hcccccCcceEeeecceEEEeeEEEEeecCC
Confidence 2111111112233334444555666666664
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=8.8 Score=33.81 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=94.9
Q ss_pred CCCeEEEEEeC--CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 245 SGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 245 ~g~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
+| .++.+.+. ...|++||+.+++.+...+.+.+-.|.- .+. .-|..+..
T Consensus 55 ~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE--------------------------Git--~~gd~~y~ 105 (262)
T COG3823 55 DG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE--------------------------GIT--KLGDYFYQ 105 (262)
T ss_pred CC-EEEEeccccccceeEEEeccCceEEEEeecCCcccccc--------------------------cee--eccceEEE
Confidence 44 34555543 3469999999998877665331111110 111 11223322
Q ss_pred -EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---ceEEEEecC-CCceEEEE
Q 011924 323 -VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---ESVAVLKGN-LGAIRSIR 397 (475)
Q Consensus 323 -~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~~~~~~~~~-~~~v~~l~ 397 (475)
.-.+|..+.+|.++-+.+..+. .++.-+.++- ++..|+.+....+++.-|..+.. +...++.+. -..+..+.
T Consensus 106 LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE 182 (262)
T COG3823 106 LTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE 182 (262)
T ss_pred EEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccccee
Confidence 2367888899998888777665 4455555544 55556666666677776654321 111222211 11222333
Q ss_pred EccCCCEEEEEcCCCeEEEEECCCCeeEEEEe------------ccCCCeEEEEEcCCCCeEEEEE
Q 011924 398 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEI------------DFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 398 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~i~~l~fspdg~~l~~~~ 451 (475)
|- +|...|-.-....|...+..+|+.+..+. .+....++|++.|++..++..+
T Consensus 183 ~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 183 WV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 32 45555544445556666667776554443 1334678999999986666554
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.41 E-value=1.1 Score=38.77 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=25.5
Q ss_pred CceEEEEEccCC------CEEEEEcCCCeEEEEECC
Q 011924 391 GAIRSIRYTSDG------RYMATAEPADFVHVYDVK 420 (475)
Q Consensus 391 ~~v~~l~~spdg------~~la~~~~dg~i~iwd~~ 420 (475)
..+..++|||-| -+||+.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378899999955 378999999999999865
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=6.4 Score=38.77 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=70.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEE----EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~----~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++.||+|.+.+|+--.+.+|.+++....+... +-+.....|...+|+.+ .-+|..+..| +.+|-+....+.++.
T Consensus 71 SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRl 148 (657)
T KOG2377|consen 71 SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRL 148 (657)
T ss_pred EEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhh
Confidence 99999999999999999999999874333221 22223445888999876 5566665554 778877554556677
Q ss_pred EecCCCceEEEEEccCCCEEEEEc
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.+.+...|.-..|+|+-+.+..++
T Consensus 149 Vks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 149 VKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhcccCccEEEEccccceEeeec
Confidence 777788888899999887554443
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.24 E-value=1.3 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=29.2
Q ss_pred cCCCEEEEEc-CCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 400 SDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 400 pdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
|++++|+++. .++.|.++|..++..+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 6788776655 478999999998887776655 3445566654
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=3 Score=41.61 Aligned_cols=78 Identities=8% Similarity=0.063 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCC--------CceEEEEe-----------cCCCceEEEEEccCC---CEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNL--------SESVAVLK-----------GNLGAIRSIRYTSDG---RYMA 406 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~--------~~~~~~~~-----------~~~~~v~~l~~spdg---~~la 406 (475)
.|..+..+|.|..++-++.+|.+..+=.+.. ++++.... ...-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667888999999999999986554432211 22111111 112246688999976 6888
Q ss_pred EEcCCCeEEEEECCCCeeEE
Q 011924 407 TAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~ 426 (475)
.-+.|+.|+|||+.....+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88899999999998765543
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.12 E-value=0.23 Score=52.24 Aligned_cols=109 Identities=8% Similarity=-0.043 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE-----------EEecCCCEEEEEeCCCeEEEEECCCCC----
Q 011924 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS-----------AWHPNGVTFATGNQDKTCRIWDLRNLS---- 380 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~-----------~~sp~g~~l~t~s~dg~v~iwd~~~~~---- 380 (475)
+.-++..+-.++.+++....+... ..+.+|..++..+ ..+|||..||+++.||.++.|.+.-.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 555666666777777665543221 2334465544432 369999999999999999998775333
Q ss_pred ceEEEEecCCC-ceEEEEEccCC---------CEEEEEcC-CCeEEEEECCCCeeE
Q 011924 381 ESVAVLKGNLG-AIRSIRYTSDG---------RYMATAEP-ADFVHVYDVKSGYEK 425 (475)
Q Consensus 381 ~~~~~~~~~~~-~v~~l~~spdg---------~~la~~~~-dg~i~iwd~~~~~~~ 425 (475)
++++.++.|.+ +-.|.-|..+- +++++++. +..+++|.....+++
T Consensus 273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 46677777763 22232233222 23444443 345888886655544
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.98 E-value=13 Score=34.32 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=101.6
Q ss_pred EEEEEE--cCcEEEEEecCc--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.-.+.+ ++.++-+.|.-| .|+.+++.+.+......+ ...----.+++ . +++ ++.-.=.++...+||..+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~--~-~d~-l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITI--L-GDK-LYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEE--E-TTE-EEEEESSSSEEEEEETTTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEE--E-CCE-EEEEEecCCeEEEEccccc
Confidence 345666 556666777776 677788877665432222 11111223444 2 233 3444448899999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC-
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH- 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h- 346 (475)
+.+..+..+..=- .++ .+|+.|+.+.....++.+|..+-+...++.-.
T Consensus 121 ~~~~~~~y~~EGW-----------------------------GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 121 KKIGTFPYPGEGW-----------------------------GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEEEEEE-SSS-------------------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred eEEEEEecCCcce-----------------------------EEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 9999888654333 444 46777777777778999998887776665421
Q ss_pred ----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---------------CCCceEEEEEccCCC-EEE
Q 011924 347 ----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---------------NLGAIRSIRYTSDGR-YMA 406 (475)
Q Consensus 347 ----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---------------~~~~v~~l~~spdg~-~la 406 (475)
-..+..+.|- +|...|=.=....|..-|..+ +..+..+.. ...-.+.+|+.|.+. +++
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 1245556664 554444443455666677755 555554421 134578999998665 445
Q ss_pred EE
Q 011924 407 TA 408 (475)
Q Consensus 407 ~~ 408 (475)
||
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=8.7 Score=33.84 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=44.2
Q ss_pred cCcEEEEEecC--ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec
Q 011924 198 KDKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (475)
Q Consensus 198 ~~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (475)
++.++.+.|.- ..|++|++.+.+..+...+.. ..+-.=-+ ..-|+.+..-.=.+|....+|..+.+.+..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGi--t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGI--TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccce--eeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 56666766654 468889998777665443321 01111011 112333333334788888999999888888775
Q ss_pred ccc
Q 011924 276 PWP 278 (475)
Q Consensus 276 ~~~ 278 (475)
++.
T Consensus 130 ~Ge 132 (262)
T COG3823 130 EGE 132 (262)
T ss_pred CCc
Confidence 543
No 448
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.60 E-value=13 Score=33.99 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=79.7
Q ss_pred EEEEEeecccceEEEEee--ee--eeEEECCCCcEEEEEeCC---CcEEEEECCC---CceEE----EeecCCCCeEEEE
Q 011924 289 LLCRLLNFMTEKVIICLL--CL--QHSSQSPDGKLLIIVGDN---PDGLLVDSMT---GKTIA----SLCGHLDFSFASA 354 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~--~i--~~~~~sp~g~~l~~~~~d---g~i~iwd~~~---~~~~~----~l~~h~~~v~~~~ 354 (475)
+.-.+||+.+++...... .+ .+-++-|+|++|.+|+.. ..+++++... ..... .+. ...+--+..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~ 124 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTAT 124 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccce
Confidence 345677777665543211 11 133577899999998742 3577777543 11111 121 122223344
Q ss_pred EecCCCEEEEEeCCC-eEEEEECCCCCc-eEE--EEec-----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 355 WHPNGVTFATGNQDK-TCRIWDLRNLSE-SVA--VLKG-----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg-~v~iwd~~~~~~-~~~--~~~~-----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
.-|||+.|+.|+... +..+|.-+.... ... .+.. ...--..+...|+|++++.+..+ -.|||..+.+.+
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~ 202 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVV 202 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEE
Confidence 567999999887764 456666532111 111 1111 11122356678999999888765 467798887666
Q ss_pred EEEeccCCC
Q 011924 426 EQEIDFFGE 434 (475)
Q Consensus 426 ~~~~~~~~~ 434 (475)
+.+....+.
T Consensus 203 ~~lP~lPg~ 211 (243)
T PF07250_consen 203 RTLPDLPGG 211 (243)
T ss_pred eeCCCCCCC
Confidence 666554443
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.05 E-value=2.4 Score=38.19 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=53.8
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEE----eeec-------CCCCceeEEEEEeCCCCCeEEEEEeCCCe
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCS----RTTY-------DDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~----~~~~-------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~ 258 (475)
+++..|...+++|++-+.+|.+++||+...+..... .+.. .....|..+.+ +.+|.. +++-+ +|.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l--t~~G~P-iV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL--TSNGVP-IVTLS-NGD 88 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE--cCCCCE-EEEEe-CCC
Confidence 367778889999999999999999999876643221 1111 34456677777 888876 55543 477
Q ss_pred EEEEECCCCeeee
Q 011924 259 VRDFDMGKYQLSK 271 (475)
Q Consensus 259 v~iwd~~~~~~~~ 271 (475)
...|+..-+..+.
T Consensus 89 ~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 89 SYSYSPDLGCWIR 101 (219)
T ss_pred EEEeccccceeEE
Confidence 8888876554443
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.91 E-value=0.041 Score=53.76 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
..++++.+.+-|.+.. ++.++.+..|..||-. ++.......++..- .++
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~al-----------------------------dm~ 81 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKAL-----------------------------DMA 81 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHh-----------------------------hhh
Confidence 3456666666888887 6666677888888853 44444444555444 778
Q ss_pred ECCCCcEEEE-EeCCCcEEEEECCCCceEEEee--c-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 313 QSPDGKLLII-VGDNPDGLLVDSMTGKTIASLC--G-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 313 ~sp~g~~l~~-~~~dg~i~iwd~~~~~~~~~l~--~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
|.-+|..+++ +-..+.+.+||+.+... +.++ + |.... +.|++....++.+...|.++|++... .+.+-....
T Consensus 82 wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gk 157 (615)
T KOG2247|consen 82 WDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGK 157 (615)
T ss_pred hccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccc-hhhhhhhcc
Confidence 8888776655 45678899999875432 2222 1 22222 68999999999999999999999876 333333333
Q ss_pred CCCceEEEEEccCCCEEEEE
Q 011924 389 NLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~ 408 (475)
|...++++++.+.+..+...
T Consensus 158 h~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cccceeEEEecccceeeecC
Confidence 77788999999988655443
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.85 E-value=2.1 Score=38.57 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.4
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEE------Ee-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAV------LK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~------~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+..+++++++...+|.+++||+.+....+.. +. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4557889999999999999999873221111 11 2445788899999998777765 46789998654
Q ss_pred C
Q 011924 422 G 422 (475)
Q Consensus 422 ~ 422 (475)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.63 E-value=2.4 Score=44.15 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=45.3
Q ss_pred cCcEEEEEecCceEEEEeCCC---CCceEEEeeecCC--------------------CCceeEEEEEeCC---CCCeEEE
Q 011924 198 KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYDD--------------------NAITNAVEIYGSP---SGAVHFT 251 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~--------------------~~~v~~l~~~~s~---~g~~~l~ 251 (475)
+...++.+..+|.+....... .+..........+ .+.+..+++ ++ ++..+++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 234 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAV--SSSEINDDTFLF 234 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEE--ecceeCCCCEEE
Confidence 778888888999998888765 2222211111111 234455555 44 2344588
Q ss_pred EEeCCCeEEEEECCCCeeeeeee
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+-+.|+++|+||+.+++++.+..
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 88999999999999999977654
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.31 E-value=19 Score=33.80 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=100.3
Q ss_pred cEEEEEecCceEEEEeCCCCCc---eEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee--eee
Q 011924 200 KLLVAGGFQGELICKHLDRPGV---SFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--KHF 273 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~---~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~--~~~ 273 (475)
..++.++.+|+|.-|....... ......-.. ....-..+++.....+..+.++--..++|.+||-.-.+.. ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3467888999999998532222 111111111 1223345666334446665666667889999985322221 112
Q ss_pred ecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCe
Q 011924 274 RFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFS 350 (475)
Q Consensus 274 ~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v 350 (475)
..+ -|..|.|-+- .++ .....|+-..-.+++..=+.+...|.|-++|+ .|+.++++. +.-...
T Consensus 181 ~DP~iPagyAPFnI-------qni------g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 181 IDPALPAGYAPFNV-------QNL------GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAP 246 (336)
T ss_pred cCCCCCCCCCCcce-------EEE------CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCC
Confidence 111 1111222110 000 00001112222344433344555688999996 588888885 334556
Q ss_pred EEEEEec------CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC------ceEEEEEcc
Q 011924 351 FASAWHP------NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG------AIRSIRYTS 400 (475)
Q Consensus 351 ~~~~~sp------~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~------~v~~l~~sp 400 (475)
+.++..| .+.+|+----||+|..+|..+ +..+-.+....+ .++.+.|..
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7777766 456666666799999999865 666666655332 456777754
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.26 E-value=14 Score=37.14 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEe-----cCCCceEEEEEccCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLK-----GNLGAIRSIRYTSDG 402 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~-----~~~~~v~~l~~spdg 402 (475)
.+...-...+.++|.|+|++|++--..|.|++++..... ..+..+. ...+....|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344445678899999999888777657999999864321 1221111 134677899999874
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.23 E-value=2.2 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
|+++.++++...+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677767777778999999998888877776
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.86 E-value=16 Score=32.41 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred cEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CC---eEEEEE-CCC---CCceEE-
Q 011924 318 KLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DK---TCRIWD-LRN---LSESVA- 384 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg---~v~iwd-~~~---~~~~~~- 384 (475)
..|.++.....|.+|++. ..++..++.. -+.|..+.++..|++++|--. .. .+|+|= .+. ..+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344344566789999988 3345666664 478999999999999998743 22 567752 111 112222
Q ss_pred EEec---------------------CCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCC
Q 011924 385 VLKG---------------------NLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 385 ~~~~---------------------~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+-| ...++.+++..| .|+. +.|+ ++.+.||.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEE
Confidence 1111 123567888888 5654 4555 457999987654
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.85 E-value=21 Score=33.66 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=97.9
Q ss_pred eEEEEeCCCCCceEEEeee---cCCCCceeEEEEEeCCC---CCeEEEEEeCCCeEEEEECCCCeeeeeeec---c--cc
Q 011924 210 ELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPS---GAVHFTASNNDCGVRDFDMGKYQLSKHFRF---P--WP 278 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~~~s~~---g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~--~~ 278 (475)
+|.+||+.+.+......+. ....+..+.+.+...+. ..+..++-+..+.|.|+|+.+++..+...+ + ..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5666777766643322221 12456778888853332 134466666667999999999887665542 1 11
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCCCcEEEEECC-----CCc---------eEE
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDNPDGLLVDSM-----TGK---------TIA 341 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~dg~i~iwd~~-----~~~---------~~~ 341 (475)
..|.- .+........+..++.+| +|+.|....-.+ -++|.+. ... .+.
T Consensus 115 ~~~~i--------------~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~ 179 (287)
T PF03022_consen 115 GPFTI--------------GGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQ 179 (287)
T ss_dssp EEEEE--------------TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-E
T ss_pred cceec--------------cCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccce
Confidence 22111 122222222344677765 777777665433 1233322 111 122
Q ss_pred EeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEe-c-C-CCceEEEEEcc--CCCEEEEE
Q 011924 342 SLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLK-G-N-LGAIRSIRYTS--DGRYMATA 408 (475)
Q Consensus 342 ~l~~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~-~-~-~~~v~~l~~sp--dg~~la~~ 408 (475)
.+ |. ......++.+++|.++++--....|..|+....-. ....+. . . ...+..+++.+ +|.+.+.+
T Consensus 180 ~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 180 DL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 22 22 23566788999999999999999999999875211 122221 1 2 35678899998 77655554
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.56 E-value=7.7 Score=38.91 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=46.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEE---------CCCCceEEEee-----------cCCCCeEEEEEecCC---CEEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVD---------SMTGKTIASLC-----------GHLDFSFASAWHPNG---VTFATGN 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd---------~~~~~~~~~l~-----------~h~~~v~~~~~sp~g---~~l~t~s 366 (475)
-+..++.|..++..|.+|-+.++= +..|+++..-. ...-.+..++|||++ ..|..-+
T Consensus 108 ~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~ 187 (741)
T KOG4460|consen 108 QVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT 187 (741)
T ss_pred EEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEe
Confidence 778899999999988888554432 12343321111 112246678999965 5677777
Q ss_pred CCCeEEEEECCC
Q 011924 367 QDKTCRIWDLRN 378 (475)
Q Consensus 367 ~dg~v~iwd~~~ 378 (475)
.|.++||||+..
T Consensus 188 sdnviRiy~lS~ 199 (741)
T KOG4460|consen 188 SDNVIRIYSLSE 199 (741)
T ss_pred cCcEEEEEecCC
Confidence 899999999864
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.44 E-value=18 Score=32.23 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=58.4
Q ss_pred CCEEEEEeCCCeEEEEECCC-CCceEEEEecCCCceEEEEEccCCCEEEEEcCC---C---eEEEE---ECC--CCeeEE
Q 011924 359 GVTFATGNQDKTCRIWDLRN-LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---D---FVHVY---DVK--SGYEKE 426 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g---~i~iw---d~~--~~~~~~ 426 (475)
+.+|++ .....|.+|++.. ..+++..+.. -+.|..+.++..|.+|++-..+ . .+|+| ... ...++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 344443 4556799999973 2445566654 3789999999999999998653 2 66775 222 111111
Q ss_pred -EEec---------------------cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 427 -QEID---------------------FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 427 -~~~~---------------------~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.+ ...++.+++-.|-.--|++|+.+.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~ 156 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK 156 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE
Confidence 1111 223567788888666677777654
No 460
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.33 E-value=42 Score=36.46 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=69.1
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE
Q 011924 250 FTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
+..++.++.|.-.|..+++.+-.+.....+.........-.+..|+...+..... + ..+-...+..+++++.|+.+
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~---~-~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPA---A-PAAPADCARRIILPTSDARL 272 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccc---c-cccccccCCEEEEecCCCeE
Confidence 5666678899999999999888776443322100000000111122111100000 0 00001245678888899999
Q ss_pred EEEECCCCceEEEeecCCCCe-------------EEEEEec--CCCEEEEEeC----------CCeEEEEECCCCCceE
Q 011924 330 LLVDSMTGKTIASLCGHLDFS-------------FASAWHP--NGVTFATGNQ----------DKTCRIWDLRNLSESV 383 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v-------------~~~~~sp--~g~~l~t~s~----------dg~v~iwd~~~~~~~~ 383 (475)
+-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|+++ ++.+
T Consensus 273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~ 349 (764)
T TIGR03074 273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALV 349 (764)
T ss_pred EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEe
Confidence 9999999998876632 1111 1122233 2345666643 68899999987 5543
No 461
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.28 E-value=50 Score=37.30 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=20.1
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+...+.+++.+|||..+++-..+-.++
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhhh
Confidence 445788999999999888766555544
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=88.23 E-value=26 Score=33.91 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=79.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
.+.+.|++.+++++ ..|.+..-.-..++....+. +-...+.++.+.|+++.++++ ..|.+++=.... +..-.....
T Consensus 177 ~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~-G~sW~~~~~ 253 (334)
T PRK13684 177 NLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD-LESWSKPII 253 (334)
T ss_pred EEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC-CCccccccC
Confidence 88899988766555 55644432112233333332 334678899999999877766 557665322222 222221111
Q ss_pred ----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe---ccCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 389 ----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 389 ----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
....+..+.+.|+++.++++ .+|.|. .....|..-.... ........+.|..+++.+++|. . |.+|+
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~---G~il~ 327 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-R---GVLLR 327 (334)
T ss_pred CccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-C---ceEEE
Confidence 22357789999988766655 466444 3334443322221 2224577888887776665543 3 45555
Q ss_pred EE
Q 011924 462 YG 463 (475)
Q Consensus 462 ~~ 463 (475)
+.
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 54
No 463
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=88.21 E-value=0.34 Score=46.99 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.0
Q ss_pred EEEEEec
Q 011924 201 LLVAGGF 207 (475)
Q Consensus 201 ~lvsg~~ 207 (475)
=+|+|+.
T Consensus 194 DFVCGTL 200 (458)
T PF10446_consen 194 DFVCGTL 200 (458)
T ss_pred cccCCCc
Confidence 3444443
No 464
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.91 E-value=26 Score=33.59 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=34.5
Q ss_pred CCcEEEEEeC-----CCcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCC
Q 011924 316 DGKLLIIVGD-----NPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRN 378 (475)
Q Consensus 316 ~g~~l~~~~~-----dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg----~v~iwd~~~ 378 (475)
++++.+.|+. ...+..||+.+.+- ..+.. ........+...++++.+.|+.++ .+.+||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW-FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe-eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 5677777764 23578888876542 22221 111222233334677778777653 356788764
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.51 E-value=0.41 Score=50.47 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=59.1
Q ss_pred CcEEEEECC--CCceEEE-----eecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 327 PDGLLVDSM--TGKTIAS-----LCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 327 g~i~iwd~~--~~~~~~~-----l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
|.+.+|++. .|+.... ......++.-+.|.| +..++..+-.+++|++.......+ ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence 568889876 4543322 233344556667766 667788888888988877643222 3333454433322
Q ss_pred -----------EEccCCCEEEEEcCCCeEEEEEC
Q 011924 397 -----------RYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 397 -----------~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..||||+.+|+++.||.+++|-+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 37999999999999998888865
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.39 E-value=28 Score=33.37 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=16.8
Q ss_pred CCCCcEEEEEeCCC----cEEEEECCCCc
Q 011924 314 SPDGKLLIIVGDNP----DGLLVDSMTGK 338 (475)
Q Consensus 314 sp~g~~l~~~~~dg----~i~iwd~~~~~ 338 (475)
..++++.+.|+.++ .+.+||+.+.+
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCe
Confidence 34677888887653 35688887654
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.69 E-value=31 Score=33.20 Aligned_cols=146 Identities=21% Similarity=0.269 Sum_probs=85.0
Q ss_pred eEEECCCCcEEEEEeCC------CcEEEEECCCCceEEEee---------------cCCCCeEEEEEecCCCEEEEEeC-
Q 011924 310 HSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLC---------------GHLDFSFASAWHPNGVTFATGNQ- 367 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~v~~~~~sp~g~~l~t~s~- 367 (475)
++++.++|.++++.-.+ ..|+.++.. |+....+. ......-+++++|+|+.|+++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 77887788888777666 778888866 76655442 12345678999999997776643
Q ss_pred ----CC---------eEEEEECC--CCCceEEE----Eec-----CCCceEEEEEccCCCEEEEEcC-----CCeEEEE-
Q 011924 368 ----DK---------TCRIWDLR--NLSESVAV----LKG-----NLGAIRSIRYTSDGRYMATAEP-----ADFVHVY- 417 (475)
Q Consensus 368 ----dg---------~v~iwd~~--~~~~~~~~----~~~-----~~~~v~~l~~spdg~~la~~~~-----dg~i~iw- 417 (475)
|+ .++|+... ..+.+... +.. ....|+.+.+-+++++|+.--. ...++||
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 15555443 31222222 221 3457889999999997765322 2345555
Q ss_pred -ECCCCe--------------eE-EEEe----c---cCCCeEEEEEcC--CCCeEEEEEecCCc
Q 011924 418 -DVKSGY--------------EK-EQEI----D---FFGEISGISFSP--DTESLFIGVWDRTY 456 (475)
Q Consensus 418 -d~~~~~--------------~~-~~~~----~---~~~~i~~l~fsp--dg~~l~~~~~D~~~ 456 (475)
++.... .+ ..+. . ....+-+|+|-| +|+..+.-.+|...
T Consensus 248 v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 248 VDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred EEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 433210 00 0010 1 145678999987 67765554556555
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.64 E-value=2.5 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred EecCCCceEEEEEccCCCEEEEEcC-C--CeEEEE
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEP-A--DFVHVY 417 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~-d--g~i~iw 417 (475)
+....+.-....|||||+.|+.++. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444556778999999998876654 3 445444
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.59 E-value=36 Score=33.80 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=60.6
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce-----EEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-----IASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-----~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
.+.+.+++.+++++ ..|.+. +....++. ...+.. -...+.++.|.+++..+++| ..|.+....- . ++.
T Consensus 285 ~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D-~-G~t 359 (398)
T PLN00033 285 NMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD-G-GKS 359 (398)
T ss_pred eeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC-C-Ccc
Confidence 88899999888766 555543 44445542 222221 12348889999888766666 5676655532 2 333
Q ss_pred EEEEe---cCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 383 VAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 383 ~~~~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
-.... .-......+.|.++++-+++| .+|.|.-|
T Consensus 360 W~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 360 WKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22222 223467899998877766665 46665543
No 470
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.13 E-value=5.7 Score=42.84 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE-EeCCC-----eEEEEECCCCCceEEEEecCCC
Q 011924 318 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDK-----TCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t-~s~dg-----~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
+++.+....+.|.+-|.....+...-..+..+|.+.+|||||+.||- .+..+ .|.+-|+++.+.-+..+.-...
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 33333333458888897655544331336889999999999999998 44433 5889999887776677777777
Q ss_pred ceEEEEEccCCCE
Q 011924 392 AIRSIRYTSDGRY 404 (475)
Q Consensus 392 ~v~~l~~spdg~~ 404 (475)
+|..-+..++|..
T Consensus 400 aiprwrv~e~gdt 412 (912)
T TIGR02171 400 AIPRWRVLENGDT 412 (912)
T ss_pred cccceEecCCCCe
Confidence 8877777887763
No 471
>PRK13615 lipoprotein LpqB; Provisional
Probab=85.72 E-value=33 Score=35.58 Aligned_cols=137 Identities=10% Similarity=0.024 Sum_probs=81.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-Ee-
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LK- 387 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~- 387 (475)
+++.++++..++....++.+.++... +.....+.+ ..+..-.|.++| .+-+.-.....++......+..... ..
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 78999999999988777777777654 233323332 235666787777 5656544444555554332333211 11
Q ss_pred cCCCceEEEEEccCCCEEEEEcC---CCeEEEEEC--CCC--eeE----EEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDV--KSG--YEK----EQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~--~~~--~~~----~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
...+.|+.++.|+||-.+|.-.. .++|.|--+ ..+ ..+ ..+..-.+.+.++.|..++...+.+
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 12357999999999977665432 345665332 222 122 1111123588999999998876666
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.06 E-value=5.5 Score=41.50 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=28.1
Q ss_pred ceEEEEEcc----CCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 392 AIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 392 ~v~~l~~sp----dg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
.+..++.++ +..+|++.+.|+.+++||+.++.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6689999999999999999999885544
No 473
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=34 Score=31.98 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=110.4
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--- 267 (475)
-+..+.+.+++...+..+.-+++.|+.++........ ....+...++.+ .|++ +..+..|...-+.|+.+.
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~-lnt~gyaygv~v----sGn~-aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF-LNTDGYAYGVYV----SGNY-AYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceecc-ccCCceEEEEEe----cCCE-EEEeeccCcEEEEECCCCCCc
Confidence 3556666888888888888899999988775532222 222244555555 6776 555545666677787553
Q ss_pred eeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce---EEEe
Q 011924 268 QLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASL 343 (475)
Q Consensus 268 ~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~l 343 (475)
++...... .+... .+++| |++-.++..++-+.|.|+..... +...
T Consensus 162 ~lagrya~~~~d~~-----------------------------~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 162 QLAGRYALPGGDTH-----------------------------DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred eeeeeeccCCCCce-----------------------------eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 23333332 22222 45554 56666777888899999875532 2222
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
. ....+.++..+++--+++.. +.-+.+-|......+... ......++.--.|.-.|++...+..+..+.+-|+.+.
T Consensus 211 n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 211 N-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred e-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 2 22367888777766555554 334777787654432211 1112222222123334667777777777777777653
No 474
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.51 E-value=34 Score=31.68 Aligned_cols=149 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred eeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 309 QHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 309 ~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
..++-.|||..-.++...+.|--.|..+|+....--+.......+...|||..-++-+.. .|.-.|-++.......+..
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Q ss_pred --CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 389 --NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 389 --~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
.........|.+.|++-.++. .|.--=.|..++....--....+...+|+-.|+|+.-++...+..+..+
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred ccCCCcccceeeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.00 E-value=71 Score=34.94 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred EeCCCCCceEEEeee-----cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE--------------------EECCCCe
Q 011924 214 KHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD--------------------FDMGKYQ 268 (475)
Q Consensus 214 w~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i--------------------wd~~~~~ 268 (475)
||............. ......+..+++.--..|..+-++.-....+.. |.+..+.
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEE----------ECC---
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV----------DSM--- 335 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iw----------d~~--- 335 (475)
.++.+.+..... .+.+..++|++=.......+- ...
T Consensus 81 PI~qI~fa~~~~-------------------------------~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~ 129 (765)
T PF10214_consen 81 PIKQIKFATLSE-------------------------------SFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSR 129 (765)
T ss_pred CeeEEEeccccc-------------------------------ccCCcCcEEEEEcCCEEEEEEcccccccccccCCccc
Q ss_pred -CCceEEEeecCC---CCeEEEEEec-CCCEEEEEeCCCeEEEEEC----CCCCceEEEEecCCCce------E----EE
Q 011924 336 -TGKTIASLCGHL---DFSFASAWHP-NGVTFATGNQDKTCRIWDL----RNLSESVAVLKGNLGAI------R----SI 396 (475)
Q Consensus 336 -~~~~~~~l~~h~---~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~----~~~~~~~~~~~~~~~~v------~----~l 396 (475)
...++..+..+. .+...++|+| +...||.....|...||++ ..............+.+ . .+
T Consensus 130 i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI 209 (765)
T PF10214_consen 130 IDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRI 209 (765)
T ss_pred cccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceee
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCee--EEEEeccCCCeEEEEEcCC--CCeEEEEE
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGYE--KEQEIDFFGEISGISFSPD--TESLFIGV 451 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~fspd--g~~l~~~~ 451 (475)
.|.++-..|++++... +.++|+.+... ..........|.++.-+|. +..++..+
T Consensus 210 ~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSK-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred EecCCCCEEEEEcCCc-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec
No 476
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.81 E-value=63 Score=34.25 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=29.8
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
..+..+..||+.++|+--...|.|.+-++.. .+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 5577889999999999999999888888754 44444443
No 477
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=83.69 E-value=0.77 Score=49.97 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.1
Q ss_pred ceeeecccce
Q 011924 126 STILHFQLRN 135 (475)
Q Consensus 126 ~~~~h~~lr~ 135 (475)
....||..|.
T Consensus 767 ~~~~~Fk~Rv 776 (784)
T PF04931_consen 767 ENVIHFKNRV 776 (784)
T ss_pred HHHHHHHHHH
Confidence 3445666554
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.68 E-value=11 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.3
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
+..+|.+.-||..+++.. .+..--.-.++++++||+.+|+++-
T Consensus 33 ~~~~GRll~ydp~t~~~~-vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT-VLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEE-EEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEE-EehhCCCccCeEEEcCCCCEEEEEe
Confidence 345688999999887543 3333345788999999999988864
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.66 E-value=28 Score=39.15 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=47.5
Q ss_pred eEEECCCCcEEEEEeCCCcEE--EEECCCC---c-e----------------EEEee-cCCCCeEEEEEecCCCEEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGL--LVDSMTG---K-T----------------IASLC-GHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~--iwd~~~~---~-~----------------~~~l~-~h~~~v~~~~~sp~g~~l~t~s 366 (475)
|+....+|+.+.+| .||.++ +|....| + + +-.+. .+.++|..+......+.+++-+
T Consensus 183 ~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~ls 261 (1311)
T KOG1900|consen 183 CITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLS 261 (1311)
T ss_pred EEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeec
Confidence 88877788877766 555444 2222222 1 0 11123 4678999999998888999999
Q ss_pred CCCeEEEEECCC
Q 011924 367 QDKTCRIWDLRN 378 (475)
Q Consensus 367 ~dg~v~iwd~~~ 378 (475)
..++|++||+..
T Consensus 262 ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 262 EKGTVSAYDIGG 273 (1311)
T ss_pred cCceEEEEEccC
Confidence 999999999965
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.53 E-value=56 Score=33.41 Aligned_cols=114 Identities=24% Similarity=0.138 Sum_probs=60.1
Q ss_pred EEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC---eEEEEEecCCCEEEEEe--------------CCCeEEE
Q 011924 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF---SFASAWHPNGVTFATGN--------------QDKTCRI 373 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~---v~~~~~sp~g~~l~t~s--------------~dg~v~i 373 (475)
+..-++|.+++..+ ..+..+|+ .|+.+......... -..+..-|+|++|+.+. .|. |..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEE
Confidence 45678888887665 67888887 47766655432221 24567789999998887 222 333
Q ss_pred EECCCCCceEEEEec-------------------------C--CCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 374 WDLRNLSESVAVLKG-------------------------N--LGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 374 wd~~~~~~~~~~~~~-------------------------~--~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
+| .+ ++.+..+.. . --.+.++.+.| ++.+|+++-.-..|...|.++++..
T Consensus 229 vd-~t-G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 229 VD-PT-GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp E--TT-S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred EC-CC-CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 33 22 333322210 0 02478899988 6677777777778999998888665
Q ss_pred EEEec
Q 011924 426 EQEID 430 (475)
Q Consensus 426 ~~~~~ 430 (475)
..+-.
T Consensus 307 Wilg~ 311 (477)
T PF05935_consen 307 WILGP 311 (477)
T ss_dssp EEES-
T ss_pred EEeCC
Confidence 55443
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.30 E-value=46 Score=32.22 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=18.4
Q ss_pred EEEEcCcEEEEEecC-----------ceEEEEeCCCCCce
Q 011924 194 TLAVKDKLLVAGGFQ-----------GELICKHLDRPGVS 222 (475)
Q Consensus 194 ~l~~~~~~lvsg~~d-----------g~i~vw~~~~~~~~ 222 (475)
....++++.+.||.. ..+.+||.......
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 344488888899864 24666776655433
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.27 E-value=47 Score=35.40 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=70.2
Q ss_pred eEEECCCCcEEEEEeC----CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCC
Q 011924 310 HSSQSPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~ 380 (475)
-+.|..|..+.+++.. ...+++|. +.|+.-..-....+.-..+.|-|+|..++|-..|| .|+++.- + +
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-N-G 282 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-N-G 282 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-C-C
Confidence 4567667777666642 23455654 33332221122223334589999999999987665 2454443 2 1
Q ss_pred ceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 381 ESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 381 ~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
-....+ .+-...+..++|.-....++.+. .+.|++|-.++-............++-+.|+|.
T Consensus 283 LrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 283 LRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred cccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 111111 11122455677776666666655 457999997764322222222345677888884
No 483
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.22 E-value=63 Score=34.31 Aligned_cols=139 Identities=24% Similarity=0.215 Sum_probs=79.3
Q ss_pred eEEECCCCcEEEEEeCCC----cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe------CCCe-------EE
Q 011924 310 HSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKT-------CR 372 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg----~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s------~dg~-------v~ 372 (475)
.+.|+|+|..++..+.++ .+++.+.. + .+..+...+....|+|.++.++... .++. +.
T Consensus 64 ~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (620)
T COG1506 64 ELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLP 138 (620)
T ss_pred ccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccc
Confidence 778999999999887333 23344433 3 3344556677889999988887721 1222 23
Q ss_pred EEECCCCCc--e---------EEEEecCCCceEEEEEccCCCEEEEEcCCCe-------EEEEECCCCeeEEEEeccCCC
Q 011924 373 IWDLRNLSE--S---------VAVLKGNLGAIRSIRYTSDGRYMATAEPADF-------VHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 373 iwd~~~~~~--~---------~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~ 434 (475)
+|.....+. . ..........+...+++++++.++....+.. ..++...++ .+.......+.
T Consensus 139 ~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (620)
T COG1506 139 VWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLTPGEGS 217 (620)
T ss_pred eeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEEEcCCCce
Confidence 333222101 1 1112223345666667777777766654432 333333333 34444555667
Q ss_pred eEEEEEcCCCCeEEEEEecC
Q 011924 435 ISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~ 454 (475)
+..+.|.++|+.++..+...
T Consensus 218 ~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 218 ISKLAFDADGKSIALLGTES 237 (620)
T ss_pred eeeeeeCCCCCeeEEeccCC
Confidence 89999999999777654443
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.97 E-value=81 Score=34.86 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC---CeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG---AVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g---~~~l~s~s~dg~v~iwd~~~ 266 (475)
..|...+++...+|.+..+|.+.-+..+..+.......-..-+..+.|+++..-+.| ..+++.++.|+++++..+..
T Consensus 540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 456666678888888888999888877644443322222334566788888333322 23588899999999999976
Q ss_pred Ceeeeeee
Q 011924 267 YQLSKHFR 274 (475)
Q Consensus 267 ~~~~~~~~ 274 (475)
...+..+.
T Consensus 620 ~d~l~~ls 627 (1205)
T KOG1898|consen 620 SDCLQPLS 627 (1205)
T ss_pred cceEEEcc
Confidence 65555544
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.64 E-value=5.4 Score=24.42 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=21.0
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeC-C--CeEEEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQ-D--KTCRIW 374 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~-d--g~v~iw 374 (475)
+......-....|+|||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445566788999999998886654 4 555555
No 486
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.56 E-value=45 Score=31.65 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=52.6
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-----EEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-----ASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~-----~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+.++...++|.+|+++-.-..|.+.|.++|+.+..+.|....-+ ..+|-.+-+++-.+..+++|.|+|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 344788888999999988888999999999999999977522111 24444455555556778899999974
No 487
>PRK13614 lipoprotein LpqB; Provisional
Probab=82.51 E-value=54 Score=34.21 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=76.8
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCc----e
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSE----S 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~----~ 382 (475)
+++.++++..++....++. .+|-...+.... .+.+. .+..-.|.++| .+-+.-.+. .|....-..... .
T Consensus 347 s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~ 422 (573)
T PRK13614 347 SPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQAP 422 (573)
T ss_pred ceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccccc
Confidence 7899999999988877662 333322233332 34432 36667788877 565654433 444433211111 1
Q ss_pred E--EEEecCCC-ceEEEEEccCCCEEEE-EcCCCe--EEEEEC---CCCeeEEEEe----ccCCCeEEEEEcCCCCeEEE
Q 011924 383 V--AVLKGNLG-AIRSIRYTSDGRYMAT-AEPADF--VHVYDV---KSGYEKEQEI----DFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 383 ~--~~~~~~~~-~v~~l~~spdg~~la~-~~~dg~--i~iwd~---~~~~~~~~~~----~~~~~i~~l~fspdg~~l~~ 449 (475)
+ .......+ .|+.++.|+||-.+|. .+.+|. |.|--+ ..|.+..... .....+.++.|..++..++.
T Consensus 423 ~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~ 502 (573)
T PRK13614 423 TVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVT 502 (573)
T ss_pred ceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEE
Confidence 1 11122223 4999999999976655 434554 665433 3443111111 22367899999999876665
Q ss_pred EE
Q 011924 450 GV 451 (475)
Q Consensus 450 ~~ 451 (475)
+.
T Consensus 503 ~~ 504 (573)
T PRK13614 503 KA 504 (573)
T ss_pred ec
Confidence 53
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.36 E-value=26 Score=32.93 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=58.7
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe------CCCeEEEEECCCCCceEEEEecC-----CCceE
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKTCRIWDLRNLSESVAVLKGN-----LGAIR 394 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s------~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~ 394 (475)
...|.+||..+.+-...-.+-.+.|.++.|..+.++++.|. ....+..||+.+ .....+.+. .++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45689999876654444445667899999987777777775 355788999864 334444442 36787
Q ss_pred EEEEcc-CC-CEEEEEc-C--CCeEEEEECC
Q 011924 395 SIRYTS-DG-RYMATAE-P--ADFVHVYDVK 420 (475)
Q Consensus 395 ~l~~sp-dg-~~la~~~-~--dg~i~iwd~~ 420 (475)
.+.+.. |+ ++.+.|. . +..|..||=.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 777743 33 3444433 2 3457777643
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.06 E-value=46 Score=35.25 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=39.3
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCC
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDT 444 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg 444 (475)
+....+.+..+..||++++||.=...|.|.+-++...+....+.. .......++|.-+.
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 333345788999999999999999999999988765554444331 11223356665443
No 490
>PLN02193 nitrile-specifier protein
Probab=80.23 E-value=73 Score=32.51 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeecC----CCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~h----~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~ 381 (475)
++++.+.|+.+ ..+.++|+.+.+-. .+... .......+..-++++.+.|+.++ .+..||+.+ .+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t-~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD-KK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC-CE
Confidence 56677777654 35788898765422 22211 11111112223566667776543 467788754 22
Q ss_pred eEEEEec------CCCceEEEEEccCCCEEEEEcCC----CeEEEEECCCCee
Q 011924 382 SVAVLKG------NLGAIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGYE 424 (475)
Q Consensus 382 ~~~~~~~------~~~~v~~l~~spdg~~la~~~~d----g~i~iwd~~~~~~ 424 (475)
-..+.. ..... .++ .-++++++.++.+ ..|.+||+.+..-
T Consensus 306 -W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 -WFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred -EEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 111111 11111 121 2357777777654 4699999987654
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.38 E-value=70 Score=31.80 Aligned_cols=137 Identities=11% Similarity=0.100 Sum_probs=77.2
Q ss_pred eEEECCCCcEEEEEeCCCcEE-EEECCCCce-EEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-----
Q 011924 310 HSSQSPDGKLLIIVGDNPDGL-LVDSMTGKT-IASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE----- 381 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~-iwd~~~~~~-~~~l-~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~----- 381 (475)
.+..+++|.+++++.. |.+. -|| .|.. ...+ ......+.++.|.+++.+++++ ..|.+.. .... +.
T Consensus 243 ~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~~ 316 (398)
T PLN00033 243 TVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEEDF 316 (398)
T ss_pred eEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCccccc
Confidence 5567788887777644 4433 343 3332 1222 2234568899999999888776 5565443 3222 22
Q ss_pred eEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE---eccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 382 SVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE---IDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 382 ~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
....+.. ....+..+.|.+++..+++| ..|.+.... ..|+.-... ......+..+.|.++++-+ +.+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCcE
Confidence 2222221 12358899999888766555 567555554 444332221 2334678899998775544 4455543
No 492
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=77.58 E-value=76 Score=31.21 Aligned_cols=201 Identities=15% Similarity=0.044 Sum_probs=0.0
Q ss_pred EEEEEcCcEEEEEecCc-----------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----
Q 011924 193 STLAVKDKLLVAGGFQG-----------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----- 256 (475)
Q Consensus 193 ~~l~~~~~~lvsg~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----- 256 (475)
.+...++.+.+.||..+ .+.+||.....................++.+ .+..+++.|+.+
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~----~~~~IYv~GG~~~~~~~ 154 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL----HNGKAYITGGVNKNIFD 154 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe----eCCEEEEECCCCHHHHH
Q ss_pred ----------------------------------CeEEEEECCCCeeeeeeeccc-cEEeccCCceEEEEEEeecccceE
Q 011924 257 ----------------------------------CGVRDFDMGKYQLSKHFRFPW-PVNVSSSYCIILLCRLLNFMTEKV 301 (475)
Q Consensus 257 ----------------------------------g~v~iwd~~~~~~~~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~ 301 (475)
..+.+||..+.+....-..+. +..
T Consensus 155 ~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~--------------------- 213 (376)
T PRK14131 155 GYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA--------------------- 213 (376)
T ss_pred HHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC---------------------
Q ss_pred EEEeeeeeeEEECC-CCcEEEEEe------CCCcEEEEECCCCceEEEeecCC----------CCeEEEEEecCCCEEEE
Q 011924 302 IICLLCLQHSSQSP-DGKLLIIVG------DNPDGLLVDSMTGKTIASLCGHL----------DFSFASAWHPNGVTFAT 364 (475)
Q Consensus 302 ~~~~~~i~~~~~sp-~g~~l~~~~------~dg~i~iwd~~~~~~~~~l~~h~----------~~v~~~~~sp~g~~l~t 364 (475)
..++-. ++++.+.|+ ....++.+++...+......... ......+...++++++.
T Consensus 214 --------~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~ 285 (376)
T PRK14131 214 --------GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVA 285 (376)
T ss_pred --------cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEe
Q ss_pred EeCC----------------------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC------eEEE
Q 011924 365 GNQD----------------------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD------FVHV 416 (475)
Q Consensus 365 ~s~d----------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg------~i~i 416 (475)
|+.+ ..+.+||..+ .+-...-.-....-...+..-+++++++|+... .|..
T Consensus 286 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~-~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~ 364 (376)
T PRK14131 286 GGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN-GKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTL 364 (376)
T ss_pred eccCCCCChhhhhcCCcccccCCcceeehheEEecC-CcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEE
Q ss_pred EECCCCeeEEE
Q 011924 417 YDVKSGYEKEQ 427 (475)
Q Consensus 417 wd~~~~~~~~~ 427 (475)
+..+......+
T Consensus 365 ~~~~~~~~~~~ 375 (376)
T PRK14131 365 LSWDGKKLTVE 375 (376)
T ss_pred EEEcCCEEEEe
No 493
>PRK10115 protease 2; Provisional
Probab=77.33 E-value=1.1e+02 Score=32.97 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=107.2
Q ss_pred eEEEEEE--cCcEEEEEe-----cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----Ce
Q 011924 191 QVSTLAV--KDKLLVAGG-----FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CG 258 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~ 258 (475)
.+..+.+ ++++|+.+. ..-.|++.++.++.... ..... .-..++| +++++.++++...+ ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i~~---~~~~~~w--~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELLDN---VEPSFVW--ANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccccC---cceEEEE--eeCCCEEEEEEecCCCCCCCE
Confidence 3444444 778777643 33467788886543210 11111 1144777 88888766665432 35
Q ss_pred EEEEECCCC--eeeeeeecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe---CCCcEEEE
Q 011924 259 VRDFDMGKY--QLSKHFRFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG---DNPDGLLV 332 (475)
Q Consensus 259 v~iwd~~~~--~~~~~~~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~dg~i~iw 332 (475)
|+.+++.++ +-...+... ....+ .+..+.+++++++.+ .++.+.++
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~----------------------------~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYV----------------------------SLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEE----------------------------EEEEcCCCCEEEEEEECCccccEEEE
Confidence 667777766 222233311 11110 223344777666543 34578888
Q ss_pred ECC--CCceEEEeecCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCCceEEEEecC-C-CceEEEEEccCCCEE
Q 011924 333 DSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-K--TCRIWDLRNLSESVAVLKGN-L-GAIRSIRYTSDGRYM 405 (475)
Q Consensus 333 d~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g--~v~iwd~~~~~~~~~~~~~~-~-~~v~~l~~spdg~~l 405 (475)
+.. ++.....+..-.+....+. +..+.+++....+ . .|...++....+. ..+..+ . ..|..+.++. +.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~ 329 (686)
T PRK10115 253 DAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLV 329 (686)
T ss_pred ECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEE
Confidence 853 3443323332222223222 3334444433332 2 3444455422222 333333 2 3677777772 2344
Q ss_pred EEEcCCCe--EEEEECCCCeeEEEEe-ccCCCeEEEEEc--CCCC-eEEEEEecCCcceEEEE
Q 011924 406 ATAEPADF--VHVYDVKSGYEKEQEI-DFFGEISGISFS--PDTE-SLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 406 a~~~~dg~--i~iwd~~~~~~~~~~~-~~~~~i~~l~fs--pdg~-~l~~~~~D~~~~~ll~~ 462 (475)
++...++. +.+++..++ .+..+. .....+..+.++ +++. .+++.+.-.+-+.+..+
T Consensus 330 ~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 391 (686)
T PRK10115 330 VEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFEL 391 (686)
T ss_pred EEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEE
Confidence 45555554 555565433 333332 222233334455 4444 34433333333444444
No 494
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.94 E-value=41 Score=36.75 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=45.9
Q ss_pred eEE-EEEEcCcEEEEEecCceEEEEeCCCCCceEEEee-------e-cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 191 QVS-TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRT-------T-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 191 ~v~-~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~-------~-~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
+|. |++..|+.|..|+.+|.+.++.+........... . .-+..+|+.+.. .+.-..+++. .|+.|.+
T Consensus 17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~--~~~~~~ll~l--~dsqi~~ 92 (877)
T KOG2063|consen 17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLV--CASLELLLIL--SDSQIAV 92 (877)
T ss_pred ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhh--cchhcchhee--cCCccee
Confidence 445 6666899999999999999999876532211111 0 012455666655 4443332222 5777888
Q ss_pred EECCCCee
Q 011924 262 FDMGKYQL 269 (475)
Q Consensus 262 wd~~~~~~ 269 (475)
+.+...+.
T Consensus 93 ~~l~~~~~ 100 (877)
T KOG2063|consen 93 HKLPELEP 100 (877)
T ss_pred eecCcccc
Confidence 88766554
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.80 E-value=13 Score=36.73 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=83.4
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC----cee-EEEEEeCCCCCeEEEEEeCCCeEEEE-ECCCCe
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA----ITN-AVEIYGSPSGAVHFTASNNDCGVRDF-DMGKYQ 268 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~-~l~~~~s~~g~~~l~s~s~dg~v~iw-d~~~~~ 268 (475)
++.+|+.|..-+. .++.++++.+...... +......+ .|+ .+.. - .|..-+++++.||.|.-| |+....
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~l--L-~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYL--L-SGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHH--H-hCceeEEEEcCCCceeeeeeeecCC
Confidence 3448888776544 6788888875443321 22222111 122 1111 1 233347777899999888 554322
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
. .++.|....++.|... +.+.-..+.+-+++-+.+|++.++.....+++..-. --.
T Consensus 303 ~-p~l~h~R~f~l~pa~~----------------------~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~ 358 (733)
T COG4590 303 Q-PHLNHIRNFKLAPAEV----------------------QFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQ 358 (733)
T ss_pred C-CcceeeeccccCcccc----------------------eeeccccccceEEEEcCCCceeeeecccCcceehhh-hhc
Confidence 1 3333332222221100 022222244557777788888877754444432222 223
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
.+.-+++||++.++++-.. |.++++.+.+
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~-gki~~~~l~N 387 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQ-GKIRLAQLEN 387 (733)
T ss_pred CcceeeeCcccchheeecC-CceEEEEecC
Confidence 4566899999999988744 6799999877
No 496
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=75.82 E-value=0.84 Score=34.13 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=3.4
Q ss_pred CCcCCcCccCHHHH
Q 011924 67 GIPWERLSITREKY 80 (475)
Q Consensus 67 ~i~w~~~~~~r~~~ 80 (475)
++||..+.--+..|
T Consensus 40 e~p~p~fgea~~~~ 53 (101)
T PF09026_consen 40 EVPVPEFGEAMAYF 53 (101)
T ss_dssp ------HHHHHHHH
T ss_pred cccchhHHHHHhhc
Confidence 46887765433333
No 497
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.78 E-value=32 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.2
Q ss_pred eEEECCCCcEEEEE
Q 011924 310 HSSQSPDGKLLIIV 323 (475)
Q Consensus 310 ~~~~sp~g~~l~~~ 323 (475)
.++++|++..|+++
T Consensus 61 GVals~d~~~vlv~ 74 (89)
T PF03088_consen 61 GVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTSSEEEEE
T ss_pred eEEEcCCCCEEEEE
Confidence 88999999988776
No 498
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=75.19 E-value=94 Score=31.08 Aligned_cols=225 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred cCcEEEEEecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEe--CCCCCeEEEEEeCCCeEEEEEC----------
Q 011924 198 KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYG--SPSGAVHFTASNNDCGVRDFDM---------- 264 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~--s~~g~~~l~s~s~dg~v~iwd~---------- 264 (475)
+...|++|+..|.++|+.....+ ...-..+...-..+|-.|+.-+ +......|+.= .-..+.+|.+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccC
Q ss_pred --CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-----CCcEEEEEeCCCcEEEEECCCC
Q 011924 265 --GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-----DGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 265 --~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-----~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
-.-+.+.......... ++++-| ...++.+=+-||.+.+++-+.-
T Consensus 115 ~~~~L~~~yeh~l~~~a~-----------------------------nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAY-----------------------------NMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred cEEEEEEEEEEeccccee-----------------------------EEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Q ss_pred ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC---------------------CCCCceEEEEecCCC----c
Q 011924 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL---------------------RNLSESVAVLKGNLG----A 392 (475)
Q Consensus 338 ~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~---------------------~~~~~~~~~~~~~~~----~ 392 (475)
.....+.+ ---...+++.|.-..|++++.+.++.-|.. .. .+....+.-.-+ .
T Consensus 166 ~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~-k~l~~dWs~nlGE~~l~ 243 (418)
T PF14727_consen 166 AFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSG-KKLNPDWSFNLGEQALD 243 (418)
T ss_pred EEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccccc-ccccceeEEECCceeEE
Q ss_pred eEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC----CCC---eEEEEEecCCc
Q 011924 393 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP----DTE---SLFIGVWDRTY 456 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp----dg~---~l~~~~~D~~~ 456 (475)
|..+.++.....+++-+... +.+.+ .+|....+..--..+..-..|.. .+. .+++++.++++
T Consensus 244 i~v~~~~~~~~~IvvLger~-Lf~l~-~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~L 312 (418)
T PF14727_consen 244 IQVVRFSSSESDIVVLGERS-LFCLK-DNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTL 312 (418)
T ss_pred EEEEEcCCCCceEEEEecce-EEEEc-CCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeE
No 499
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.40 E-value=14 Score=36.42 Aligned_cols=140 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE--------EEEEecCCCEEEEEeCCCeEEEE-ECC
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF--------ASAWHPNGVTFATGNQDKTCRIW-DLR 377 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~--------~~~~sp~g~~l~t~s~dg~v~iw-d~~ 377 (475)
.+..+-..|+|+.+.+-+. ..+.++++.+.....+ +--.+... ++..-..|.-+..++.||.|.-| |++
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Q ss_pred CCCc----eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 378 NLSE----SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 378 ~~~~----~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
..++ .++.++-....+..+.-..+.+-+++-+..|.+.++...+.+.+....... .+.-+++||.+.+|++
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQAYLLS 374 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCcccchhee
No 500
>PRK13613 lipoprotein LpqB; Provisional
Probab=74.39 E-value=1.2e+02 Score=31.98 Aligned_cols=154 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred eeeEEECCCCcEEEEEeCCC-cEEEEECCCCce----EEEeecCCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCC
Q 011924 308 LQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRN 378 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~----~~~l~~h~~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~ 378 (475)
+.+++.++++..+|....++ .+++..+..+.. ..... ....+..-.|.++| .+-+... ...+++..-..
T Consensus 365 ~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~~G 442 (599)
T PRK13613 365 LRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQGDG 442 (599)
T ss_pred ccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcCCC
Q ss_pred CCceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCC-------eeEEEEeccCCCeEEEEEcCCCCeEE
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSG-------YEKEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
....+.........|..++.|+||-.+|.-.. .+.|.|=-+... .....+..-.+.+.+++|..++..++
T Consensus 443 ~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~V 522 (599)
T PRK13613 443 EPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVV 522 (599)
T ss_pred cEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEE
Q ss_pred EEEecCCcceEEEEE
Q 011924 449 IGVWDRTYGSLLEYG 463 (475)
Q Consensus 449 ~~~~D~~~~~ll~~~ 463 (475)
.|...+.-.......
T Consensus 523 lg~~~~~~~~v~~v~ 537 (599)
T PRK13613 523 LGREEGGVQQARYVQ 537 (599)
T ss_pred EeccCCCCcceEEEe
Done!