Query 011926
Match_columns 475
No_of_seqs 123 out of 1452
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12851 groEL chaperonin GroE 100.0 2E-95 4E-100 776.9 52.3 469 3-474 70-539 (541)
2 PRK12849 groEL chaperonin GroE 100.0 2.6E-95 6E-100 775.4 53.0 461 3-465 69-529 (542)
3 PRK00013 groEL chaperonin GroE 100.0 1.3E-94 2.7E-99 770.2 52.9 465 3-472 69-535 (542)
4 PRK12852 groEL chaperonin GroE 100.0 3.1E-94 6.6E-99 769.9 52.9 467 4-472 71-538 (545)
5 PTZ00114 Heat shock protein 60 100.0 3E-94 6.6E-99 770.7 52.8 459 3-462 81-543 (555)
6 PRK12850 groEL chaperonin GroE 100.0 4.7E-94 1E-98 766.9 52.4 465 4-470 71-535 (544)
7 PRK14104 chaperonin GroEL; Pro 100.0 1.6E-93 3.4E-98 762.5 52.5 469 4-474 71-541 (546)
8 cd03344 GroEL GroEL_like type 100.0 2.2E-93 4.7E-98 758.7 50.4 453 3-457 67-519 (520)
9 TIGR02348 GroEL chaperonin Gro 100.0 1.1E-92 2.3E-97 754.7 51.5 456 3-460 68-523 (524)
10 PLN03167 Chaperonin-60 beta su 100.0 3.2E-92 7E-97 756.5 50.2 461 3-464 125-586 (600)
11 CHL00093 groEL chaperonin GroE 100.0 2.1E-91 4.6E-96 745.5 51.1 455 5-461 71-527 (529)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 5E-78 1.1E-82 644.8 40.7 402 4-460 64-527 (527)
13 TIGR02347 chap_CCT_zeta T-comp 100.0 1.1E-77 2.4E-82 640.4 42.6 400 3-462 71-529 (531)
14 TIGR02339 thermosome_arch ther 100.0 1.8E-77 4E-82 639.8 41.8 395 4-458 72-519 (519)
15 KOG0356 Mitochondrial chaperon 100.0 1.2E-77 2.5E-82 606.4 37.9 456 5-463 85-541 (550)
16 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.3E-77 2.9E-82 634.6 38.3 392 3-459 67-483 (484)
17 TIGR02340 chap_CCT_alpha T-com 100.0 3.4E-77 7.4E-82 639.2 41.9 403 4-461 68-532 (536)
18 cd03343 cpn60 cpn60 chaperonin 100.0 3.8E-77 8.3E-82 637.7 41.9 396 4-459 71-517 (517)
19 KOG0361 Chaperonin complex com 100.0 2E-78 4.4E-83 585.6 28.8 408 5-469 77-533 (543)
20 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.2E-77 1.1E-81 636.7 41.5 400 4-460 72-521 (522)
21 TIGR02344 chap_CCT_gamma T-com 100.0 5.1E-77 1.1E-81 637.2 41.4 398 4-461 72-524 (525)
22 TIGR02345 chap_CCT_eta T-compl 100.0 1.7E-76 3.6E-81 632.0 40.4 399 4-459 73-520 (522)
23 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5.6E-76 1.2E-80 627.3 44.0 397 4-461 71-516 (517)
24 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.7E-76 8.1E-81 629.5 42.5 398 3-458 63-515 (515)
25 PTZ00212 T-complex protein 1 s 100.0 5E-76 1.1E-80 629.4 42.5 397 4-461 83-528 (533)
26 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3E-76 6.5E-81 631.0 39.8 393 4-456 79-525 (526)
27 TIGR02342 chap_CCT_delta T-com 100.0 7E-76 1.5E-80 626.6 42.2 398 3-458 64-516 (517)
28 TIGR02343 chap_CCT_epsi T-comp 100.0 6.3E-76 1.4E-80 628.0 40.2 395 4-458 83-531 (532)
29 TIGR02346 chap_CCT_theta T-com 100.0 8.6E-75 1.9E-79 619.2 43.6 400 4-464 74-525 (531)
30 TIGR02341 chap_CCT_beta T-comp 100.0 1.3E-74 2.8E-79 616.3 43.3 398 4-462 72-518 (519)
31 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.9E-75 1.1E-79 614.9 37.7 377 4-457 72-479 (480)
32 COG0459 GroL Chaperonin GroEL 100.0 1E-73 2.3E-78 602.6 38.5 407 4-463 67-518 (524)
33 cd00309 chaperonin_type_I_II c 100.0 1.6E-72 3.5E-77 595.0 41.6 378 3-457 63-464 (464)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 2E-72 4.3E-77 593.8 39.6 380 4-458 64-471 (472)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.4E-69 3.1E-74 576.2 37.8 397 4-460 45-485 (485)
36 KOG0363 Chaperonin complex com 100.0 3.3E-69 7.2E-74 518.5 30.7 401 5-466 77-526 (527)
37 KOG0358 Chaperonin complex com 100.0 6.5E-66 1.4E-70 497.9 27.1 396 4-458 82-533 (534)
38 KOG0364 Chaperonin complex com 100.0 1.7E-64 3.7E-69 495.9 22.3 396 6-461 77-523 (527)
39 KOG0362 Chaperonin complex com 100.0 6.6E-62 1.4E-66 485.0 32.3 400 4-467 82-529 (537)
40 KOG0360 Chaperonin complex com 100.0 1.1E-61 2.3E-66 480.3 25.3 406 3-464 74-541 (545)
41 KOG0359 Chaperonin complex com 100.0 6.1E-59 1.3E-63 456.2 25.7 394 5-459 74-515 (520)
42 KOG0357 Chaperonin complex com 100.0 2.9E-54 6.2E-59 412.0 17.1 312 3-459 74-396 (400)
43 cd03333 chaperonin_like chaper 100.0 7.1E-30 1.5E-34 242.3 18.2 192 75-342 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 1.7E-29 3.7E-34 246.8 18.3 198 87-343 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.5 2.7E-13 5.9E-18 151.7 12.8 208 87-353 333-578 (1598)
46 COG0459 GroL Chaperonin GroEL 94.5 0.0071 1.5E-07 65.1 -1.3 95 170-269 237-331 (524)
47 cd02866 PseudoU_synth_TruA_Arc 42.3 26 0.00057 33.4 3.4 40 435-474 173-215 (221)
48 TIGR03659 IsdE heme ABC transp 32.8 1.1E+02 0.0024 30.0 6.3 58 169-231 83-140 (289)
49 TIGR00071 hisT_truA pseudourid 32.5 61 0.0013 31.0 4.2 41 434-474 183-226 (227)
50 PF07818 HCNGP: HCNGP-like pro 31.2 40 0.00087 27.7 2.4 55 387-448 32-86 (96)
51 COG3962 Acetolactate synthase 29.2 33 0.00072 36.3 1.9 39 326-365 216-255 (617)
52 smart00574 POX domain associat 29.1 1.5E+02 0.0032 26.2 5.6 59 291-362 68-127 (140)
53 COG2876 AroA 3-deoxy-D-arabino 29.1 3.8E+02 0.0083 26.4 8.9 35 153-187 155-190 (286)
54 cd01143 YvrC Periplasmic bindi 29.0 1.6E+02 0.0036 26.4 6.4 56 170-230 53-109 (195)
55 COG1433 Uncharacterized conser 26.6 3E+02 0.0066 23.6 7.0 32 168-200 56-87 (121)
56 PF02162 XYPPX: XYPPX repeat ( 25.5 57 0.0012 17.3 1.4 12 460-471 4-15 (15)
57 KOG1593 Asparaginase [Amino ac 25.2 1.4E+02 0.003 29.3 5.1 66 310-393 95-163 (349)
58 PF04312 DUF460: Protein of un 23.5 1.3E+02 0.0029 26.4 4.3 46 167-241 66-111 (138)
59 cd01141 TroA_d Periplasmic bin 23.4 2.7E+02 0.0058 25.0 6.7 30 170-199 62-92 (186)
60 cd02570 PseudoU_synth_EcTruA P 23.3 91 0.002 30.0 3.7 42 433-474 189-233 (239)
61 TIGR03319 YmdA_YtgF conserved 22.7 80 0.0017 34.2 3.4 47 20-66 241-295 (514)
62 PRK12434 tRNA pseudouridine sy 22.7 60 0.0013 31.4 2.3 22 453-474 218-239 (245)
63 cd02568 PseudoU_synth_PUS1_PUS 22.4 89 0.0019 30.2 3.4 42 432-474 195-239 (245)
64 cd02569 PseudoU_synth_ScPus3 P 22.2 97 0.0021 30.3 3.6 42 433-474 204-250 (256)
65 PF03102 NeuB: NeuB family; I 21.6 2.7E+02 0.0059 26.9 6.5 64 163-235 55-118 (241)
66 PRK14588 tRNA pseudouridine sy 21.5 1E+02 0.0022 30.4 3.7 42 433-474 197-241 (272)
67 PRK14586 tRNA pseudouridine sy 21.0 70 0.0015 31.0 2.3 41 434-474 196-239 (245)
68 cd01461 vWA_interalpha_trypsin 20.2 2.4E+02 0.0051 24.6 5.6 18 218-235 141-158 (171)
No 1
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-95 Score=776.91 Aligned_cols=469 Identities=54% Similarity=0.819 Sum_probs=447.0
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+.+.++|+
T Consensus 70 ~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~ 149 (541)
T PRK12851 70 GAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVAT 149 (541)
T ss_pred HHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccC-CCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESS-SSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKIS 161 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g-~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~ 161 (475)
+|+++++.|++++++|+..++++|.|.++.+ ++..|+ ++++|++|+++|.+|+|++++++|+++++||+|+++|++++
T Consensus 150 ~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 150 ISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETEL-EVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred HhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcce-EEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 9998999999999999999998887776544 344455 99999999999999999999999999999999999999999
Q ss_pred CHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcc
Q 011926 162 AIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL 241 (475)
Q Consensus 162 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~ 241 (475)
+.+++.++++++.+.|+||||++++|++.++++|..|+++|.++++|||+|+|+++++++|+|||++|||++++.+.+++
T Consensus 229 ~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~ 308 (541)
T PRK12851 229 NLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIK 308 (541)
T ss_pred cHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777778
Q ss_pred ccCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhH
Q 011926 242 IENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETE 321 (475)
Q Consensus 242 ~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~ 321 (475)
++++++++||+|+.+++.+++|++|+++++++.+..|+++++++++++.++++|++|++|++||+|+++||+|||+|+.+
T Consensus 309 ~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~ 388 (541)
T PRK12851 309 LENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVE 388 (541)
T ss_pred cCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 011926 322 LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVV 401 (475)
Q Consensus 322 l~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l 401 (475)
++|++|+++||++++++++++|+|||||++|+++|+.|++++.. .+. +++++++|++||+.||++||+|||+|+.+++
T Consensus 389 l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~-~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl 466 (541)
T PRK12851 389 VKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGD-QRTGVEIVRRALEAPVRQIAENAGAEGSVVV 466 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999988765 565 5899999999999999999999999999999
Q ss_pred HhhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCCCCCCC
Q 011926 402 EKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 402 ~~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~~~~~~ 474 (475)
++|++.+.++|||+.+|+++||++.|||||+.||.++|+.|+|+|++||+||++|+.+|++.++|+.||.|-|
T Consensus 467 ~~l~~~~~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~ 539 (541)
T PRK12851 467 GKLREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGM 539 (541)
T ss_pred HHHHhhCCCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCccc
Confidence 9999877789999999999999999999999999999999999999999999999999988888888888866
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.6e-95 Score=775.44 Aligned_cols=461 Identities=57% Similarity=0.864 Sum_probs=444.1
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|+++.+.+.++|+
T Consensus 69 ~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ 148 (542)
T PRK12849 69 GAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVAT 148 (542)
T ss_pred HHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
||+++++++++++++|+..++++|.|.++.|++++|++++++|++|+++|.+|+|++++++|+++++||+|+++|+.|++
T Consensus 149 ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 228 (542)
T PRK12849 149 ISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISS 228 (542)
T ss_pred HhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCC
Confidence 99999999999999999999988888888999999855999999999999999999998899999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI 242 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~ 242 (475)
++++.++++++.+.|+||||++++|++.|+++|.+|+++|.+++++||.|++++.++++|+|||.+|||++++++.++++
T Consensus 229 ~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~ 308 (542)
T PRK12849 229 LQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKL 308 (542)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777789
Q ss_pred cCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHH
Q 011926 243 ENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETEL 322 (475)
Q Consensus 243 ~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l 322 (475)
+++++++||+|++|+++++++++|+++++++.+..|+++|+++++++.++|++++|+||++||+|++|||+|||+|+.++
T Consensus 309 ~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l 388 (542)
T PRK12849 309 EEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEL 388 (542)
T ss_pred ccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926 323 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE 402 (475)
Q Consensus 323 ~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~ 402 (475)
+|++|+++||++++++++++|+|||||++|+++|++|.+++ +.++.+ ++++++|++||+.||++||+|||+|+.++++
T Consensus 389 ~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~-~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~ 466 (542)
T PRK12849 389 KERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQ-AAGVEIVRRALEAPLRQIAENAGLDGSVVVA 466 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988 677764 8999999999999999999999999999999
Q ss_pred hhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCC
Q 011926 403 KVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP 465 (475)
Q Consensus 403 ~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~ 465 (475)
+|++.++++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.+|++..|
T Consensus 467 ~L~~~~~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 467 KVLELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred HHHhhCCCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 999877789999999999999999999999999999999999999999999999999865444
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-94 Score=770.22 Aligned_cols=465 Identities=58% Similarity=0.860 Sum_probs=440.5
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+++.++|.
T Consensus 69 ~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ 148 (542)
T PRK00013 69 GAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVAT 148 (542)
T ss_pred HHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCC-CccchheeecceEEeecccCCccccCcccccceecceeEEEeccccC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSS-SFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKIS 161 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~-~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~ 161 (475)
||+++++.+++++++|+..++++|.|.++.+. +..|+ ++++|++|+++|.+|+|++++++|++.++||+|+++|++|+
T Consensus 149 ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~-~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~ 227 (542)
T PRK00013 149 ISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETEL-EVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS 227 (542)
T ss_pred hcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceE-EEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC
Confidence 99999999999999999999988877775443 44566 99999999999999999999989999999999999999999
Q ss_pred CHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcc
Q 011926 162 AIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL 241 (475)
Q Consensus 162 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~ 241 (475)
+++++.++++++.+.|+||||++++|++.++++|..|+++|++++++||.|+|++.++++|+|||++|||++++.+.+++
T Consensus 228 ~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~ 307 (542)
T PRK00013 228 NIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLK 307 (542)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877778
Q ss_pred ccCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhH
Q 011926 242 IENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETE 321 (475)
Q Consensus 242 ~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~ 321 (475)
++++++++||+|+.++++++++++|+++++++.+..|+++|+++++++.+++++++|+||++||+|+.+||+|||+|+.+
T Consensus 308 ~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~ 387 (542)
T PRK00013 308 LEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVE 387 (542)
T ss_pred cccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 011926 322 LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVV 401 (475)
Q Consensus 322 l~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l 401 (475)
++|++|+++||++++++++++|+|||||++|+++|++|+++ .+..+. +++++++|++||+.||++||+|||+|+.+++
T Consensus 388 l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl 465 (542)
T PRK00013 388 MKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGD-EATGINIVLRALEAPLRQIAENAGLEGSVVV 465 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999988 566676 4899999999999999999999999999999
Q ss_pred HhhhcC-CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCCCCC
Q 011926 402 EKVKDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 472 (475)
Q Consensus 402 ~~l~~~-~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~~~~ 472 (475)
++|++. ++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+||++|+.+|.+ .+.|||-|
T Consensus 466 ~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~--~~~~~~~~ 535 (542)
T PRK00013 466 EKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEK--KAAAPPMG 535 (542)
T ss_pred HHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cCCCCCCC
Confidence 999873 5679999999999999999999999999999999999999999999999998854 44555543
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-94 Score=769.85 Aligned_cols=467 Identities=53% Similarity=0.814 Sum_probs=444.7
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATI 83 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~t 83 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+++.++|++
T Consensus 71 akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~ 150 (545)
T PRK12852 71 AQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTI 150 (545)
T ss_pred HHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred hccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCCH
Q 011926 84 SAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI 163 (475)
Q Consensus 84 s~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~ 163 (475)
|++.++.+++++++|+.+++++|.|.+..|++..+.+++++|+.|+++|.+|+|++++++|+..++||+|+++|++|+++
T Consensus 151 s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~ 230 (545)
T PRK12852 151 SANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGL 230 (545)
T ss_pred hcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCH
Confidence 99889999999999999999999888888888744449999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcccc
Q 011926 164 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 243 (475)
Q Consensus 164 ~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~ 243 (475)
+++.++++.+.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+|++.++++|+|||++|||++++.+.+++++
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~ 310 (545)
T PRK12852 231 QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLE 310 (545)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777899
Q ss_pred CCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHH
Q 011926 244 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 323 (475)
Q Consensus 244 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~ 323 (475)
++++++||+|+.++++++++++|+++++++.+..|+++++++++++.+.|+++++++|++||+++++||+|||+|+.+++
T Consensus 311 ~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~ 390 (545)
T PRK12852 311 NVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVK 390 (545)
T ss_pred CCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHh
Q 011926 324 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEK 403 (475)
Q Consensus 324 E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~ 403 (475)
|++|+++||++++++++++|+|||||++|+++|++|.+++.. .+. +|+++++|++||+.||++||+|||+|+.+++++
T Consensus 391 E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~-~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~ 468 (545)
T PRK12852 391 EKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NAD-VQAGINIVLKALEAPIRQIAENAGVEGSIVVGK 468 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999999999999999999998765 555 589999999999999999999999999999999
Q ss_pred hhc-CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCCCCC
Q 011926 404 VKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 472 (475)
Q Consensus 404 l~~-~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~~~~ 472 (475)
|++ .++++|||+.+|+++||++.|||||+.||.++|+.|+|+|++||+||++|+.+|+++..++.||-|
T Consensus 469 l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~ 538 (545)
T PRK12852 469 ILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGG 538 (545)
T ss_pred HHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCC
Confidence 987 456799999999999999999999999999999999999999999999999999876655555543
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3e-94 Score=770.71 Aligned_cols=459 Identities=54% Similarity=0.804 Sum_probs=441.2
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+.+.++|+
T Consensus 81 ~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ 160 (555)
T PTZ00114 81 GAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVAT 160 (555)
T ss_pred HHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
||+++++++++++++|+..++++|.|.++.|++++|++++++|++|+++|.+|+|++++++|+.+++||+|+++|++|++
T Consensus 161 ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~ 240 (555)
T PTZ00114 161 ISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS 240 (555)
T ss_pred HHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC
Confidence 99988999999999999999998989999999999987899999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccc-cCcc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGD-LGLL 241 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~-~~~~ 241 (475)
++++.++++++.+.|+||+|++++|+++++++|..|+++|+++++|||.|+++++++++|+|||++|||+++++. .++.
T Consensus 241 ~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~ 320 (555)
T PTZ00114 241 IQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLK 320 (555)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975 5666
Q ss_pred ccCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhH
Q 011926 242 IENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETE 321 (475)
Q Consensus 242 ~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~ 321 (475)
++++++++||+|++|++.++++++++++++++.++.|++.++.++++..+++++++|++|++||++++|||+|||+|+.+
T Consensus 321 l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~ 400 (555)
T PTZ00114 321 LDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVE 400 (555)
T ss_pred cccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 011926 322 LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD--KLEDADERLGADIVQKALVAPASLIAHNAGVEGEV 399 (475)
Q Consensus 322 l~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~--~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~ 399 (475)
++|++|+++||++++++++++|||||||++|+++|++|++++. +.++. +++++++|++||+.||++||+|||+|+.+
T Consensus 401 l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~-~~~~i~~~a~AL~~ip~~La~NaG~d~~~ 479 (555)
T PTZ00114 401 VNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPD-QRTGVKIVRNALRLPTKQIAENAGVEGAV 479 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999999998865 45666 48999999999999999999999999999
Q ss_pred HHHhhhc-CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCC
Q 011926 400 VVEKVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 462 (475)
Q Consensus 400 ~l~~l~~-~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~ 462 (475)
++++|++ +++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+||++|+.+|.+
T Consensus 480 v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 480 VVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 9999987 67789999999999999999999999999999999999999999999999988755
No 6
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.7e-94 Score=766.85 Aligned_cols=465 Identities=53% Similarity=0.801 Sum_probs=441.5
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATI 83 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~t 83 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++++++.++|.++|++
T Consensus 71 a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~ 150 (544)
T PRK12850 71 AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATI 150 (544)
T ss_pred HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred hccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCCH
Q 011926 84 SAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI 163 (475)
Q Consensus 84 s~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~ 163 (475)
|+++++.+++++++|+..++++|.|.++.+...++++++++|++|+++|.+|+|++++++|+.+++||+|+++|+++++.
T Consensus 151 s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~ 230 (544)
T PRK12850 151 SANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNL 230 (544)
T ss_pred hcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCH
Confidence 99899999999999999999888777765555555559999999999999999999888899999999999999999999
Q ss_pred HhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcccc
Q 011926 164 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 243 (475)
Q Consensus 164 ~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~ 243 (475)
+++.++++++.++|+||||++++|+++++++|.+|+++|.++++|||.|+|+++++++|+|||++|||++++.+.+++++
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~ 310 (544)
T PRK12850 231 QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLE 310 (544)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977777889
Q ss_pred CCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHH
Q 011926 244 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 323 (475)
Q Consensus 244 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~ 323 (475)
++++++||+|+++++.+++|++|+++++++.+..|+++++++++++.+++++++|++|++||+|+++||+|||+|+.+++
T Consensus 311 ~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~ 390 (544)
T PRK12850 311 NVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVK 390 (544)
T ss_pred cCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHh
Q 011926 324 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEK 403 (475)
Q Consensus 324 E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~ 403 (475)
|++|+++||++++++++++|||||||++|++++..|+++ .+..+. +++++++|++||+.||++||+|||+|+.+++++
T Consensus 391 E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~ 468 (544)
T PRK12850 391 EKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGL-KGANAD-ETAGIDIVRRALEEPLRQIATNAGFEGSVVVGK 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999999999999999999999999999988 556666 489999999999999999999999999999999
Q ss_pred hhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCCC
Q 011926 404 VKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPP 470 (475)
Q Consensus 404 l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~~ 470 (475)
|++.+.++|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|+.+|++.++++|.|
T Consensus 469 l~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~ 535 (544)
T PRK12850 469 VAELPGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGP 535 (544)
T ss_pred HHhhCCCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCC
Confidence 9987778999999999999999999999999999999999999999999999999997765444433
No 7
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.6e-93 Score=762.46 Aligned_cols=469 Identities=52% Similarity=0.814 Sum_probs=445.4
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATI 83 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~t 83 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+++.++|++
T Consensus 71 akll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~ 150 (546)
T PRK14104 71 AQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTI 150 (546)
T ss_pred HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred hccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCCH
Q 011926 84 SAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI 163 (475)
Q Consensus 84 s~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~ 163 (475)
|+++++.+++++++|+..++++|.|.++.+++.+|++++++|++|+++|.+|||+++++.++.+++||+|+++|.+++++
T Consensus 151 s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~ 230 (546)
T PRK14104 151 SANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSL 230 (546)
T ss_pred HhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCH
Confidence 99999999999999999999999888888888865559999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcccc
Q 011926 164 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 243 (475)
Q Consensus 164 ~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~ 243 (475)
+++.++++++.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+|++.++++|+|||++|||++++++.++.++
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~ 310 (546)
T PRK14104 231 NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLE 310 (546)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977777799
Q ss_pred CCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHH
Q 011926 244 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 323 (475)
Q Consensus 244 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~ 323 (475)
++++++||+|+++++++++++++++|++++.+..|+++|+++++++.++|++++|+||++||+|+++||+|||+|+++++
T Consensus 311 ~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~ 390 (546)
T PRK14104 311 NVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVK 390 (546)
T ss_pred cCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHh
Q 011926 324 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEK 403 (475)
Q Consensus 324 E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~ 403 (475)
|++|+++||++++++++++|+|||||++|+++|..|+++.. ..+. +++++++|++||+.||++|++|||+|+.+++++
T Consensus 391 e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~ 468 (546)
T PRK14104 391 ERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDD-QKTGVEIVRKALSAPARQIAINAGEDGSVIVGK 468 (546)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChH-HHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999998743 4444 589999999999999999999999999999999
Q ss_pred hhc-CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCC-CCCCCC
Q 011926 404 VKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAA-PPQGLM 474 (475)
Q Consensus 404 l~~-~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~-~~~~~~ 474 (475)
|++ .++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+||++|..+|.+....++ ||+|-|
T Consensus 469 l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~~~~~~~~ 541 (546)
T PRK14104 469 ILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGM 541 (546)
T ss_pred HHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Confidence 987 45679999999999999999999999999999999999999999999999999977654445 888754
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-93 Score=758.71 Aligned_cols=453 Identities=59% Similarity=0.871 Sum_probs=437.8
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+
T Consensus 67 ~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 146 (520)
T cd03344 67 GAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVAT 146 (520)
T ss_pred HHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
||+++++++++++++|+..++++|.|.+++|+++.|++++++|++|+++|.+|+|.+++++|+++++||+|+++|++|++
T Consensus 147 ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~ 226 (520)
T cd03344 147 ISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISS 226 (520)
T ss_pred HhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCC
Confidence 99999999999999999999988888889999999955999999999999999999988889999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI 242 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~ 242 (475)
++++.++++++.+.|+||||++++|+++++++|.+|+++|.+++++||+|+++++++++|+|||.+|||++++++.++++
T Consensus 227 ~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~ 306 (520)
T cd03344 227 IQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKL 306 (520)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777788
Q ss_pred cCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHH
Q 011926 243 ENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETEL 322 (475)
Q Consensus 243 ~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l 322 (475)
+++++++||+|+++++++++++++++++++++++.|++.++++++++.+++++++|+||++||+|+.|||+|||+|+.++
T Consensus 307 ~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l 386 (520)
T cd03344 307 EDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVEL 386 (520)
T ss_pred ccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926 323 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE 402 (475)
Q Consensus 323 ~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~ 402 (475)
+|++|+++||++++++++++|+|||||++|+++|++|++++. .++. +++++++|++||+.||++|++|||+|+.++++
T Consensus 387 ~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~-~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~ 464 (520)
T cd03344 387 KEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGD-EKLGIEIVRRALEAPLRQIAENAGVDGSVVVE 464 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999999999999999887 6776 48999999999999999999999999999999
Q ss_pred hhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhh
Q 011926 403 KVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 457 (475)
Q Consensus 403 ~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~ 457 (475)
+|++.+.++|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|.+|.
T Consensus 465 ~l~~~~~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 465 KVLESPDGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHhhcCCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 9998666899999999999999999999999999999999999999999999875
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.1e-92 Score=754.67 Aligned_cols=456 Identities=60% Similarity=0.889 Sum_probs=437.1
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+
T Consensus 68 ~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ 147 (524)
T TIGR02348 68 GAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVAT 147 (524)
T ss_pred HHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
+|+++++++++++++|+..++++|.|.++.|++.+|.+++++|++|+++|.+|+|++++++|++.++||+|+++|++|++
T Consensus 148 ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 227 (524)
T TIGR02348 148 ISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN 227 (524)
T ss_pred HhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC
Confidence 99999999999999999999998888888888886655999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI 242 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~ 242 (475)
++++.++++++.+.|+||||++++|+++|+++|..|+++|++++++||.|++++.++++|+|||++|||++++.+.++++
T Consensus 228 ~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~ 307 (524)
T TIGR02348 228 IKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKL 307 (524)
T ss_pred HHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred cCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHH
Q 011926 243 ENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETEL 322 (475)
Q Consensus 243 ~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l 322 (475)
+++++++||+|+.+++.++++++++++++++.+..|++.++++++++.++++|++|+||++||+|+++||+|||+|+.++
T Consensus 308 ~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l 387 (524)
T TIGR02348 308 EEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEM 387 (524)
T ss_pred CcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926 323 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE 402 (475)
Q Consensus 323 ~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~ 402 (475)
+|++|+++||++++|+++++|||||||++|+++|++|.+ ..+.++. +++++++|++||+.||++|++|||+|+.++++
T Consensus 388 ~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~-~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~ 465 (524)
T TIGR02348 388 KEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNED-EAIGIDIVKRALEAPLRQIAENAGKDGAVVAE 465 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChH-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999998 6666676 58999999999999999999999999999999
Q ss_pred hhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCC
Q 011926 403 KVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 460 (475)
Q Consensus 403 ~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p 460 (475)
+|++...++|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...|
T Consensus 466 ~l~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 466 KVKESKGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHhcCCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 9987534599999999999999999999999999999999999999999999997654
No 10
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.2e-92 Score=756.53 Aligned_cols=461 Identities=52% Similarity=0.798 Sum_probs=442.0
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
.-+|++++|++||+++||||||++||+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++ ++|.++|+
T Consensus 125 gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~ 203 (600)
T PLN03167 125 GAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAA 203 (600)
T ss_pred HHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999976 57999999
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
+|+++++.|++|+++|+.+++++|.|.++.|++++|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++
T Consensus 204 tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~ 283 (600)
T PLN03167 204 VSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITN 283 (600)
T ss_pred HhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCC
Confidence 99999999999999999999998988889999999988999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI 242 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~ 242 (475)
++++.++++.+.+.|+|+||++++|+++++++|+.|+++|.+++++||.|+|++.++++|+|||.+|||++++++.++++
T Consensus 284 ~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l 363 (600)
T PLN03167 284 ARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSL 363 (600)
T ss_pred HHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997777789
Q ss_pred cCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHH
Q 011926 243 ENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETEL 322 (475)
Q Consensus 243 ~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l 322 (475)
+++++++||+|++|++.+++++++++.++++.+++|+.+++.+++++.++|+++++++|+++|+|+.++|+|||+|+.++
T Consensus 364 ~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l 443 (600)
T PLN03167 364 DKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETEL 443 (600)
T ss_pred ccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926 323 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE 402 (475)
Q Consensus 323 ~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~ 402 (475)
+|++|+++||++++|+++++|+|||||++|+++|++|++++.+..++++..+++++++||+.||++||+|||+|+.++++
T Consensus 444 ~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~ 523 (600)
T PLN03167 444 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSE 523 (600)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988777888877789999999999999999999999999999
Q ss_pred hhhc-CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCC
Q 011926 403 KVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKT 464 (475)
Q Consensus 403 ~l~~-~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~ 464 (475)
+|++ .++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||++|++|+.+|.+++
T Consensus 524 ~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~ 586 (600)
T PLN03167 524 KVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP 586 (600)
T ss_pred HHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 9984 5678999999999999999999999999999999999999999999999998875544
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.1e-91 Score=745.50 Aligned_cols=455 Identities=56% Similarity=0.857 Sum_probs=433.4
Q ss_pred HHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHh
Q 011926 5 DCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATIS 84 (475)
Q Consensus 5 ~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts 84 (475)
+|++++|.+|++++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++|.+.|.++|++|
T Consensus 71 ~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts 150 (529)
T CHL00093 71 ALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASIS 150 (529)
T ss_pred HHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCCH-
Q 011926 85 AGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI- 163 (475)
Q Consensus 85 ~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~- 163 (475)
+++++.|++++++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||++++++|+.+++||+|+++|++|++.
T Consensus 151 ~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~ 230 (529)
T CHL00093 151 AGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ 230 (529)
T ss_pred ccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH
Confidence 9999999999999999999888888776665555559999999999999999999999999999999999999999997
Q ss_pred HhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcccc
Q 011926 164 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 243 (475)
Q Consensus 164 ~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~ 243 (475)
.++.++++++.+.|.|+||++++|+++++++|..|+.+|+++++|||.|++++.++++|+|||++|||++++++.+.+++
T Consensus 231 ~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~ 310 (529)
T CHL00093 231 QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLE 310 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcC
Confidence 78899999999999999999999999999999888888889999999999999999999999999999999987777899
Q ss_pred CCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHH
Q 011926 244 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 323 (475)
Q Consensus 244 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~ 323 (475)
++++++||+|+.+++.++++++|+ .++++.+..|+++++++++.+.+++|+++|+||+++|+|+++||+|||+|+.+++
T Consensus 311 ~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~ 389 (529)
T CHL00093 311 TIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMK 389 (529)
T ss_pred CCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHH
Confidence 999999999999999999999998 5578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926 324 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE 402 (475)
Q Consensus 324 E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~-~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~ 402 (475)
|++|+++||++++++++++|+|||||++|+++|+.|++++. +.++.+ ++++++|++||+.||++||+|||+|+.++++
T Consensus 390 E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~-~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 468 (529)
T CHL00093 390 DKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDE-LIGALIVARAILAPLKRIAENAGKNGSVIIE 468 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999876 567764 8999999999999999999999999999999
Q ss_pred hhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 403 KVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 403 ~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
+|+..+.++|||+.+|+++||++.|||||+.||.++|+.|+|+|++|||+|++|+.+|+
T Consensus 469 ~l~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 469 KVQEQDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred HHHccCCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99887778999999999999999999999999999999999999999999999998773
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5e-78 Score=644.83 Aligned_cols=402 Identities=22% Similarity=0.279 Sum_probs=360.3
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh-ccccCC--CHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRDDIKAV 80 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~i~--~~~~l~~v 80 (475)
.+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++ +++|++ +.+.|.++
T Consensus 64 akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~i 143 (527)
T cd03335 64 AKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINV 143 (527)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999996 899987 78889999
Q ss_pred HHHhcc------CChhHHhHHHHHHHHhCC---CCc-------cc--cccCCCccchheeecceEEeecccCCccccCcc
Q 011926 81 ATISAG------NDDLIGTMIADAIDKVGP---DGV-------LS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 142 (475)
Q Consensus 81 a~ts~~------~~~~l~~li~~a~~~~~~---~g~-------I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 142 (475)
|+|+++ +.+.|++++++|+..++. +|. |+ ...|+++.|+ ++++|++|++++.+|
T Consensus 144 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~------- 215 (527)
T cd03335 144 AKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ------- 215 (527)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------
Confidence 999986 358999999999999852 232 22 3689999999 999999999999987
Q ss_pred cccceecceeEEEeccccCC-------------HHh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHh
Q 011926 143 KLIVEFENARVLVTDQKISA-------------IKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVN 198 (475)
Q Consensus 143 ~~~~~~~~~~Il~~~~~i~~-------------~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~ 198 (475)
+|+++++||+|++++++|+. +++ +.++++++.+.|+||||++++|++.++++|.++
T Consensus 216 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~ 295 (527)
T cd03335 216 GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA 295 (527)
T ss_pred CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC
Confidence 47889999999999999764 222 236788899999999999999999999999998
Q ss_pred cccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCc-cccCCCccccceeEEEE---EecceEEEEeCCCChHH
Q 011926 199 KLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGL-LIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 274 (475)
Q Consensus 199 ~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~ 274 (475)
+ +++ ++++++++|+|||++|||+++++..++ ..+++++++||+|+.++ +++++|++|++|+++
T Consensus 296 ~------I~~-----v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-- 362 (527)
T cd03335 296 G------AMA-----VRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-- 362 (527)
T ss_pred C------cEE-----EEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC--
Confidence 7 334 457889999999999999999954333 22345567899999998 678899999998763
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHH
Q 011926 275 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 353 (475)
Q Consensus 275 i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~ 353 (475)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+
T Consensus 363 ---------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~ 409 (527)
T cd03335 363 ---------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVET 409 (527)
T ss_pred ---------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHH
Confidence 589999999999999999999999999999999999 9999999999
Q ss_pred HHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC------------CCceeEecCCCccc
Q 011926 354 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAMTDKYE 421 (475)
Q Consensus 354 ~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~------------~~~~G~d~~~g~i~ 421 (475)
+++.+|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++. ++++|+|+.+|+++
T Consensus 410 ~ls~~L~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~ 488 (527)
T cd03335 410 ALSIYLENFATTLGSRE-QLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVR 488 (527)
T ss_pred HHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCccc
Confidence 99999999987777775 799999999999999999999999999999999872 35799999999999
Q ss_pred ccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCC
Q 011926 422 NMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 460 (475)
Q Consensus 422 d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p 460 (475)
||++.|||||+.+|.++|+.|+|+|++|||||++|+.+|
T Consensus 489 d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 489 DNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred chhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 999999999999999999999999999999999998876
No 13
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-77 Score=640.36 Aligned_cols=400 Identities=22% Similarity=0.299 Sum_probs=360.2
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccC---CCHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI---EGRDDIKA 79 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i---~~~~~l~~ 79 (475)
..+|+.++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++ .+.+.|.+
T Consensus 71 ~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ 150 (531)
T TIGR02347 71 TASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLN 150 (531)
T ss_pred HHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999764 47788999
Q ss_pred HHHHhccC------ChhHHhHHHHHHHHhCCCCc-c-----cc--ccCCCccchheeecceEEeecccCCccccCccccc
Q 011926 80 VATISAGN------DDLIGTMIADAIDKVGPDGV-L-----SI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI 145 (475)
Q Consensus 80 va~ts~~~------~~~l~~li~~a~~~~~~~g~-I-----~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~ 145 (475)
+|+|+++. +++|++++++|+..+++++. | ++ ..|++..|+ ++++|++|+++|.+|+ |+
T Consensus 151 ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~ 222 (531)
T TIGR02347 151 VARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MP 222 (531)
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------Cc
Confidence 99999853 88999999999999987653 3 32 578899999 9999999999999986 56
Q ss_pred ceecceeEEEeccccCCH-------------Hh-----------hHHHHHHHHhcCC-------C---EEEEeccCChHH
Q 011926 146 VEFENARVLVTDQKISAI-------------KD-----------IIPLLEKTTQLRA-------P---LLIIAEDVTGEA 191 (475)
Q Consensus 146 ~~~~~~~Il~~~~~i~~~-------------~~-----------l~~~le~i~~~~~-------~---lvi~~~~i~~~a 191 (475)
++++||+|++++++|+.. ++ +..+++++.+.+. + ||+++++|++.+
T Consensus 223 ~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a 302 (531)
T TIGR02347 223 RRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPS 302 (531)
T ss_pred eeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHH
Confidence 789999999999997543 22 2345677777551 4 999999999999
Q ss_pred HHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEE---EEecceEEEEeC
Q 011926 192 LATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTTIIAD 268 (475)
Q Consensus 192 l~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~ 268 (475)
+++|.+++ |++ ++++++++|+|||++|||++++ +++++++++||+|++| ++++++|++|++
T Consensus 303 ~~~L~~~~------I~~-----i~rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~ 366 (531)
T TIGR02347 303 LDLLAKEG------IMA-----LRRAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEE 366 (531)
T ss_pred HHHHHHCC------ceE-----EccCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEc
Confidence 99999987 344 4577899999999999999998 8999999999999999 567889999999
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCC
Q 011926 269 AASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPG 347 (475)
Q Consensus 269 ~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpG 347 (475)
|+++ +.|||+|||+|+.+++|++|+++||++++++++++| +|||
T Consensus 367 ~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpG 411 (531)
T TIGR02347 367 VKNP-----------------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPG 411 (531)
T ss_pred CCCC-----------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeC
Confidence 8764 489999999999999999999999999999999999 9999
Q ss_pred cchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC----CCceeEecCCCccccc
Q 011926 348 GGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENM 423 (475)
Q Consensus 348 GGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~ 423 (475)
||++|+++|++|++++.+.++.+ ++++++|++||+.||++|++|||+|+.+++++|++. +.++|+|+.+|++.||
T Consensus 412 GGa~E~~ls~~l~~~~~~~~~~~-~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~ 490 (531)
T TIGR02347 412 AGAFEIAAYCHLKEEKKSVKGKA-KLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDP 490 (531)
T ss_pred CCHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccch
Confidence 99999999999999887777875 899999999999999999999999999999999762 3579999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCC
Q 011926 424 LQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 462 (475)
Q Consensus 424 ~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~ 462 (475)
++.|||||+.+|+++|+.|+|+|++|||||++|+.+|..
T Consensus 491 ~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 491 EIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred hhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 999999999999999999999999999999999988753
No 14
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.8e-77 Score=639.77 Aligned_cols=395 Identities=26% Similarity=0.397 Sum_probs=360.5
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVA 81 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va 81 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +.+.|.++|
T Consensus 72 a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia 151 (519)
T TIGR02339 72 AKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVA 151 (519)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999986 467899999
Q ss_pred HHhccCC-------hhHHhHHHHHHHHhCC---CCc-------ccc--ccCCCccchheeecceEEeecccCCccccCcc
Q 011926 82 TISAGND-------DLIGTMIADAIDKVGP---DGV-------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 142 (475)
Q Consensus 82 ~ts~~~~-------~~l~~li~~a~~~~~~---~g~-------I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 142 (475)
+|+++.+ ++|++++++|+.++++ +|. |++ .+|+++.|| ++++|++|+++|.+|
T Consensus 152 ~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~------- 223 (519)
T TIGR02339 152 ETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP------- 223 (519)
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------
Confidence 9998643 8899999999999975 553 334 789999999 999999999999987
Q ss_pred cccceecceeEEEeccc-------------cCCHHhhHHHHH-----------HHHhcCCCEEEEeccCChHHHHHHHHh
Q 011926 143 KLIVEFENARVLVTDQK-------------ISAIKDIIPLLE-----------KTTQLRAPLLIIAEDVTGEALATLVVN 198 (475)
Q Consensus 143 ~~~~~~~~~~Il~~~~~-------------i~~~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~~ 198 (475)
+|+++++||+|++++++ +++++++.++++ ++++.|+|||+++++|++.++++|.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 47888999999999998 567777765554 899999999999999999999999877
Q ss_pred cccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEEe---cceEEEEeCCCChHHH
Q 011926 199 KLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEI 275 (475)
Q Consensus 199 ~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i 275 (475)
++ .+ ++++++++|+|||++|||++++ ++++++++.||+|+.|++. +++|++|++|+++
T Consensus 304 gI------~~-----v~~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--- 364 (519)
T TIGR02339 304 GI------LA-----VRRVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--- 364 (519)
T ss_pred CC------EE-----EecCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC---
Confidence 63 33 3578899999999999999999 7888888899999999864 4899999998654
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHH
Q 011926 276 QARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVH 354 (475)
Q Consensus 276 ~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ 354 (475)
..|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+
T Consensus 365 --------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ 412 (519)
T TIGR02339 365 --------------------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIE 412 (519)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHH
Confidence 379999999999999999999999999999999999 99999999999
Q ss_pred HhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccc
Q 011926 355 LSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVID 430 (475)
Q Consensus 355 ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~D 430 (475)
+|++|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++ ++.++|+|+.+|++.||++.||||
T Consensus 413 ls~~l~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~d 491 (519)
T TIGR02339 413 LALRLRSYARKIGGRE-QLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIE 491 (519)
T ss_pred HHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceE
Confidence 9999999887777775 79999999999999999999999999999999984 356899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHchhHHhhc
Q 011926 431 PAKVTRCALQNAASVAGMVLTTQAIVVE 458 (475)
Q Consensus 431 p~~vk~~~l~~A~e~a~~lL~iD~iI~~ 458 (475)
|+.||.++|+.|+|+|++|||||++|++
T Consensus 492 p~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 492 PLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999999863
No 15
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-77 Score=606.41 Aligned_cols=456 Identities=51% Similarity=0.776 Sum_probs=443.1
Q ss_pred HHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHh
Q 011926 5 DCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATIS 84 (475)
Q Consensus 5 ~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts 84 (475)
+++++++.++++..||||||+++|++++.+++.+-+.+|.+|..|.+|+..+.+.+.+.|+++++++++.+++.++|.+|
T Consensus 85 klvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiS 164 (550)
T KOG0356|consen 85 KLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATIS 164 (550)
T ss_pred HHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCCHH
Q 011926 85 AGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIK 164 (475)
Q Consensus 85 ~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~~ 164 (475)
.++|..+++++.+|+.+++++|.|.++.|.++.|++++++||.|++||++|||+++++.+..+|++|++++.+.+|++++
T Consensus 165 AngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~ 244 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQ 244 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccC-cccc
Q 011926 165 DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLG-LLIE 243 (475)
Q Consensus 165 ~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~-~~~~ 243 (475)
++.|.++...+...|+++++.+|+.++|.+|+.|+.++.++|+|||+|+|++-++..+.|++.+||++++.++.+ ++++
T Consensus 245 ~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le 324 (550)
T KOG0356|consen 245 SIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLE 324 (550)
T ss_pred HHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766 7899
Q ss_pred CCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHH
Q 011926 244 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 323 (475)
Q Consensus 244 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~ 323 (475)
..+.++||+|.++.++.++++++.+..++++++.||++++..++.+.+.||++++++|+++|+|++++|.++|.|+.|++
T Consensus 325 ~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ 404 (550)
T KOG0356|consen 325 DAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVN 404 (550)
T ss_pred cCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHh
Q 011926 324 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEK 403 (475)
Q Consensus 324 E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~ 403 (475)
|++.+++||+++.++++++|+|||||+++++|+..|.+... ..+.+++.|++++.+||..|..++++|||.|+..++.|
T Consensus 405 ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~K 483 (550)
T KOG0356|consen 405 EKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEK 483 (550)
T ss_pred hhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999999999999999998765 45555688999999999999999999999999999999
Q ss_pred hhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCC
Q 011926 404 VKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 463 (475)
Q Consensus 404 l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~ 463 (475)
++. ..+|||..+|+++||.+.||+||+.|.+.+|..|..+|.++++++.+|...|+++
T Consensus 484 v~~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 484 VLN--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHh--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 995 4999999999999999999999999999999999999999999999999999876
No 16
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-77 Score=634.63 Aligned_cols=392 Identities=22% Similarity=0.298 Sum_probs=356.4
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC---CHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE---GRDDIKA 79 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~---~~~~l~~ 79 (475)
..+|+.++|++||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.+++ +.+.+.+
T Consensus 67 ~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~ 146 (484)
T cd03342 67 TASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLS 146 (484)
T ss_pred HHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999987 8889999
Q ss_pred HHHHhccC------ChhHHhHHHHHHHHhCCCC-c-----cc--cccCCCccchheeecceEEeecccCCccccCccccc
Q 011926 80 VATISAGN------DDLIGTMIADAIDKVGPDG-V-----LS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI 145 (475)
Q Consensus 80 va~ts~~~------~~~l~~li~~a~~~~~~~g-~-----I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~ 145 (475)
+|++|++. ++.|++++++|+..+++++ . |+ ...||++.|| ++++|++|+++|.+|+ |+
T Consensus 147 va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~ 218 (484)
T cd03342 147 VARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MP 218 (484)
T ss_pred HHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CC
Confidence 99999975 4899999999999998865 2 22 3578999999 9999999999999986 57
Q ss_pred ceecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHH
Q 011926 146 VEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDI 225 (475)
Q Consensus 146 ~~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~l 225 (475)
++++||+|+++|++|+..++-.+. ....+||||+++|++.++++|.+|+ ++||+ ++++++|+||
T Consensus 219 ~~~~n~~Ill~~~~le~~~~~~~~-----~~~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~~l~~i 282 (484)
T cd03342 219 KRVENAYILTCNVSLEYEKTEVNS-----GFFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERL 282 (484)
T ss_pred ccccCceEEEEeCCCCCCccccCc-----EEEEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHHHHHHH
Confidence 789999999999999877542110 1114699999999999999999986 56655 5789999999
Q ss_pred HHHhCCeEeccccCccccCCCccccceeEEE---EEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011926 226 AIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERI 302 (475)
Q Consensus 226 a~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~ 302 (475)
|++|||++++ +++++++++||+|+++ ++++++|++|++|+++
T Consensus 283 a~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~------------------------------ 327 (484)
T cd03342 283 TLACGGVAMN-----SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP------------------------------ 327 (484)
T ss_pred HHHhCCEEec-----ccccCChhhCcccceEEEEEECCeEEEEEECCCCC------------------------------
Confidence 9999999999 8999999999999999 4678899999998764
Q ss_pred HHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHH
Q 011926 303 AKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKA 381 (475)
Q Consensus 303 ~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~A 381 (475)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++++|++++.+..+++ ++++++|++|
T Consensus 328 -----~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~-~~~i~~~a~A 401 (484)
T cd03342 328 -----KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKA-KLGVQAFADA 401 (484)
T ss_pred -----cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHH
Confidence 489999999999999999999999999999999999 999999999999999999987777764 8999999999
Q ss_pred HHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhh
Q 011926 382 LVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 457 (475)
Q Consensus 382 L~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~ 457 (475)
|+.||++|++|||+|+.+++++|++ +++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|+
T Consensus 402 l~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~ 481 (484)
T cd03342 402 LLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIR 481 (484)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 9999999999999999999999985 356799999999999999999999999999999999999999999999997
Q ss_pred cC
Q 011926 458 EK 459 (475)
Q Consensus 458 ~~ 459 (475)
.+
T Consensus 482 ~~ 483 (484)
T cd03342 482 AG 483 (484)
T ss_pred cC
Confidence 64
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-77 Score=639.22 Aligned_cols=403 Identities=21% Similarity=0.281 Sum_probs=361.0
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhc-cccCC--CHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKR-ARPIE--GRDDIKAV 80 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~i~--~~~~l~~v 80 (475)
.+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++. ++|++ +.+.+.++
T Consensus 68 akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~v 147 (536)
T TIGR02340 68 AKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINV 147 (536)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999984 88887 77889999
Q ss_pred HHHhcc------CChhHHhHHHHHHHHhCC---CCc-------ccc--ccCCCccchheeecceEEeecccCCccccCcc
Q 011926 81 ATISAG------NDDLIGTMIADAIDKVGP---DGV-------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 142 (475)
Q Consensus 81 a~ts~~------~~~~l~~li~~a~~~~~~---~g~-------I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 142 (475)
|+|+++ +++.|++++++|+..++. +|. |++ +.|+++.|+ ++++|++|+++|.+|
T Consensus 148 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~------- 219 (536)
T TIGR02340 148 AKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ------- 219 (536)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------
Confidence 999987 578999999999999862 342 222 689999888 999999999999887
Q ss_pred cccceecceeEEEeccccCCHH-------------h-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHh
Q 011926 143 KLIVEFENARVLVTDQKISAIK-------------D-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVN 198 (475)
Q Consensus 143 ~~~~~~~~~~Il~~~~~i~~~~-------------~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~ 198 (475)
+|+++++||+|++++++|+..+ + +.+.++.+++.|++||+++++|++.++++|.++
T Consensus 220 ~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~ 299 (536)
T TIGR02340 220 QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA 299 (536)
T ss_pred CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC
Confidence 4788999999999999975432 2 235677888999999999999999999999998
Q ss_pred cccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCc-cccCCCccccceeEEEE---EecceEEEEeCCCChHH
Q 011926 199 KLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGL-LIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 274 (475)
Q Consensus 199 ~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~ 274 (475)
++ ++ ++++++++|+|||++|||+++++..++ ..+++++..||+|+.|+ +++++|++|++++++
T Consensus 300 ~I------~~-----i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-- 366 (536)
T TIGR02340 300 GA------MG-----VRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-- 366 (536)
T ss_pred Cc------EE-----EecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC--
Confidence 73 33 457889999999999999999954333 23456677899999999 788999999988764
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHH
Q 011926 275 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 353 (475)
Q Consensus 275 i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~ 353 (475)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++|+
T Consensus 367 ---------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~ 413 (536)
T TIGR02340 367 ---------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVET 413 (536)
T ss_pred ---------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHH
Confidence 389999999999999999999999999999999999 9999999999
Q ss_pred HHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc------------CCCceeEecCCCccc
Q 011926 354 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD------------SEWTTGYNAMTDKYE 421 (475)
Q Consensus 354 ~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~------------~~~~~G~d~~~g~i~ 421 (475)
++|++|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++ .+.++|||+.+|++.
T Consensus 414 ~ls~~l~~~~~~~~~~~-~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~ 492 (536)
T TIGR02340 414 ALSIYLENFATTLGSRE-QLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIR 492 (536)
T ss_pred HHHHHHHHHhhhCCChh-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccc
Confidence 99999998877677764 89999999999999999999999999999999976 134799999999999
Q ss_pred ccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 422 NMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 422 d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
||++.|||||+.+|.++|+.|+|+|++|||||++|+.+|+
T Consensus 493 d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 493 DNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred cchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 9999999999999999999999999999999999998764
No 18
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.8e-77 Score=637.71 Aligned_cols=396 Identities=23% Similarity=0.377 Sum_probs=362.5
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVA 81 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va 81 (475)
-+|++++|++||+++||||||+|+|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+++ +.+.+.++|
T Consensus 71 a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va 150 (517)
T cd03343 71 AKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIA 150 (517)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999986 778899999
Q ss_pred HHhccCC------hhHHhHHHHHHHHhCCCCc---------ccc--ccCCCccchheeecceEEeecccCCccccCcccc
Q 011926 82 TISAGND------DLIGTMIADAIDKVGPDGV---------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 144 (475)
Q Consensus 82 ~ts~~~~------~~l~~li~~a~~~~~~~g~---------I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 144 (475)
+||++.+ +.|++++++|+.++++++. |++ ++|++++|| ++++|++|+++|.+|+ |
T Consensus 151 ~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m 222 (517)
T cd03343 151 KTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------M 222 (517)
T ss_pred HHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------C
Confidence 9999754 8999999999999977532 665 789999999 8999999999999986 5
Q ss_pred cceecceeEEEeccc-------------cCCHHhhHH-----------HHHHHHhcCCCEEEEeccCChHHHHHHHHhcc
Q 011926 145 IVEFENARVLVTDQK-------------ISAIKDIIP-----------LLEKTTQLRAPLLIIAEDVTGEALATLVVNKL 200 (475)
Q Consensus 145 ~~~~~~~~Il~~~~~-------------i~~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~ 200 (475)
++.++||+|++++++ +++++++.+ +++++.+.|+||||++++|++.++++|.++++
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 678899999999998 466766654 45589999999999999999999999997663
Q ss_pred cccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEEe---cceEEEEeCCCChHHHHH
Q 011926 201 RGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQA 277 (475)
Q Consensus 201 ~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ 277 (475)
.+| +++++++|+|||++|||++++ ++++++++.||+|++|++. +++|++|++|+++
T Consensus 303 ------~~v-----~~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----- 361 (517)
T cd03343 303 ------LAV-----RRVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----- 361 (517)
T ss_pred ------EEE-----EeCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----
Confidence 343 478899999999999999999 7899998999999999864 8899999998764
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHh
Q 011926 278 RIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLS 356 (475)
Q Consensus 278 ~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls 356 (475)
..|||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|
T Consensus 362 ------------------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls 411 (517)
T cd03343 362 ------------------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELA 411 (517)
T ss_pred ------------------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHH
Confidence 379999999999999999999999999999999999 9999999999999
Q ss_pred HhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccH
Q 011926 357 DHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPA 432 (475)
Q Consensus 357 ~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~ 432 (475)
.+|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++ ++.++|+|+.+|++.||++.|||||+
T Consensus 412 ~~L~~~~~~~~~~~-~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~ 490 (517)
T cd03343 412 KRLREYARSVGGRE-QLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPL 490 (517)
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecH
Confidence 99999887777765 79999999999999999999999999999999984 35679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHchhHHhhcC
Q 011926 433 KVTRCALQNAASVAGMVLTTQAIVVEK 459 (475)
Q Consensus 433 ~vk~~~l~~A~e~a~~lL~iD~iI~~~ 459 (475)
.+|+++|+.|+|+|++|||||++|+.+
T Consensus 491 ~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 491 RVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 999999999999999999999999764
No 19
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-78 Score=585.57 Aligned_cols=408 Identities=18% Similarity=0.274 Sum_probs=375.0
Q ss_pred HHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--C----HHHHH
Q 011926 5 DCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--G----RDDIK 78 (475)
Q Consensus 5 ~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~----~~~l~ 78 (475)
+.+.++|++||.||||||||||+|++|+|+++..++++|+||..|+++|+.|...+++.|+++++.++ + .+.|+
T Consensus 77 ktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~ 156 (543)
T KOG0361|consen 77 KTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLE 156 (543)
T ss_pred HHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999886 2 35689
Q ss_pred HHHHHhcc------CChhHHhHHHHHHHHhCCCC---c--cccccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 79 AVATISAG------NDDLIGTMIADAIDKVGPDG---V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 79 ~va~ts~~------~~~~l~~li~~a~~~~~~~g---~--I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
++|.|+++ ..++|++|+++|+..+..+- . |++++||+++|| .+++|+.|++.|.+.+| ++.|++
T Consensus 157 KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk 231 (543)
T KOG0361|consen 157 KCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKK 231 (543)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccc
Confidence 99999874 47899999999999987542 2 677899999999 79999999999999988 678899
Q ss_pred ecceeEEEecccc-------------CCHHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhccccc
Q 011926 148 FENARVLVTDQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 203 (475)
Q Consensus 148 ~~~~~Il~~~~~i-------------~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~ 203 (475)
+.||||+++|..+ ..++++ .++|+++..+|.++|++.-.|.|.|.+||+.+++
T Consensus 232 ~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi--- 308 (543)
T KOG0361|consen 232 FLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI--- 308 (543)
T ss_pred cCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc---
Confidence 9999999999763 344443 4689999999999999999999999999999885
Q ss_pred ceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHHH
Q 011926 204 LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIA 280 (475)
Q Consensus 204 ~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i~ 280 (475)
.+.++++.+||.|+..+|||.+.+ +..++.++.||+|..|+ ++.++|.+|+||+..
T Consensus 309 --------FCAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a-------- 367 (543)
T KOG0361|consen 309 --------FCAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA-------- 367 (543)
T ss_pred --------eecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc--------
Confidence 566899999999999999999999 88999999999999997 579999999999874
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhh
Q 011926 281 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHV 359 (475)
Q Consensus 281 ~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L 359 (475)
+.||+++||+-++.++|.+|++|||++++|.++++. ||+|||++||++|+.|
T Consensus 368 ---------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l 420 (543)
T KOG0361|consen 368 ---------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL 420 (543)
T ss_pred ---------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH
Confidence 489999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHHH
Q 011926 360 PAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVT 435 (475)
Q Consensus 360 ~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk 435 (475)
++++.+++++. |+.+.+|++|||.||++||+|+|+|...++++||. ++.|+|+|++++.+.|+++.+||||..||
T Consensus 421 Rd~S~ti~gK~-q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK 499 (543)
T KOG0361|consen 421 RDYSRTIAGKQ-QLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVK 499 (543)
T ss_pred HHhhcccCcHH-HHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHH
Confidence 99999999985 89999999999999999999999999999999998 47899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCC
Q 011926 436 RCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAP 469 (475)
Q Consensus 436 ~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~ 469 (475)
++++..|+|+||++|++|+-|++++...+||.+.
T Consensus 500 ~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a 533 (543)
T KOG0361|consen 500 INAITAATEAACLILSVDETIKNPKSQSAPPSAA 533 (543)
T ss_pred HHHHHHHHHhhhheEehhhhhcCCcccCCCCCcc
Confidence 9999999999999999999999987665555443
No 20
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.2e-77 Score=636.71 Aligned_cols=400 Identities=21% Similarity=0.299 Sum_probs=364.4
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCC------HHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG------RDDI 77 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~------~~~l 77 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ .+.+
T Consensus 72 akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l 151 (522)
T cd03340 72 AKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELL 151 (522)
T ss_pred HHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999998863 5679
Q ss_pred HHHHHHhcc------CChhHHhHHHHHHHHhCCCC---cccc--ccCCCccchheeecceEEeecccCCccccCcccccc
Q 011926 78 KAVATISAG------NDDLIGTMIADAIDKVGPDG---VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIV 146 (475)
Q Consensus 78 ~~va~ts~~------~~~~l~~li~~a~~~~~~~g---~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~ 146 (475)
.++|+|+++ ++++|++++++|+..+++++ .|++ ..|+++.|| ++++|++|+++|.+|+|. +|++
T Consensus 152 ~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~ 226 (522)
T cd03340 152 EKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPK 226 (522)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCc
Confidence 999999976 57999999999999998765 3433 589999999 899999999999999874 4678
Q ss_pred eecceeEEEeccccC-------------CHHh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccc
Q 011926 147 EFENARVLVTDQKIS-------------AIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 147 ~~~~~~Il~~~~~i~-------------~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
+++||+|++++++++ ++++ +.++++.+.+.|+++|+++++|++.++++|.++++
T Consensus 227 ~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I-- 304 (522)
T cd03340 227 KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDI-- 304 (522)
T ss_pred cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCc--
Confidence 899999999999853 4433 45678889999999999999999999999999873
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i 279 (475)
++ ++++++++|+|||++|||++++ ++++++++.||+|+.|+ ++++++++|++|+.+
T Consensus 305 ----~~-----~~~v~~~~l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------- 363 (522)
T cd03340 305 ----FC-----AGRVPEEDLKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA------- 363 (522)
T ss_pred ----EE-----EEeCCHHHHHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC-------
Confidence 33 4578899999999999999999 78999999999999998 578899999998754
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
..|||++||+|+..++|.+|+++||++++++++++| +|||||++|++++++
T Consensus 364 ----------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~ 415 (522)
T cd03340 364 ----------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKY 415 (522)
T ss_pred ----------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHH
Confidence 489999999999999999999999999999999998 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CC-CceeEecCCCcccccccCcccccHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SE-WTTGYNAMTDKYENMLQAGVIDPAK 433 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~-~~~G~d~~~g~i~d~~~~gI~Dp~~ 433 (475)
|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++ ++ .++|||+.+|++.||++.|||||+.
T Consensus 416 l~~~~~~~~~~~-~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~ 494 (522)
T cd03340 416 LRDYSRTIAGKQ-QLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSL 494 (522)
T ss_pred HHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHH
Confidence 999887777775 89999999999999999999999999999999987 23 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHchhHHhhcCC
Q 011926 434 VTRCALQNAASVAGMVLTTQAIVVEKP 460 (475)
Q Consensus 434 vk~~~l~~A~e~a~~lL~iD~iI~~~p 460 (475)
||+++|+.|+|+|++|||||++|++++
T Consensus 495 vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 495 VKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 999999999999999999999998753
No 21
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.1e-77 Score=637.19 Aligned_cols=398 Identities=22% Similarity=0.285 Sum_probs=361.5
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVA 81 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va 81 (475)
-+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ +.+.+.+++
T Consensus 72 akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~ 151 (525)
T TIGR02344 72 AKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLI 151 (525)
T ss_pred HHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999886 667899999
Q ss_pred HHhcc------CChhHHhHHHHHHHHhCCCC-----------cccc--ccCCCccchheeecceEEeecccCCccccCcc
Q 011926 82 TISAG------NDDLIGTMIADAIDKVGPDG-----------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 142 (475)
Q Consensus 82 ~ts~~------~~~~l~~li~~a~~~~~~~g-----------~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 142 (475)
+|+++ |++.|++++++|+..+++++ +|++ .+||++.|| ++++|++|++++.++
T Consensus 152 ~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~------- 223 (525)
T TIGR02344 152 QSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP------- 223 (525)
T ss_pred HHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------
Confidence 98865 36899999999999998653 1333 579999998 899999999998775
Q ss_pred cccceecceeEEEeccccCC-------------HHhhHHH-----------HHHHHhcCCCEEEEeccCChHHHHHHHHh
Q 011926 143 KLIVEFENARVLVTDQKISA-------------IKDIIPL-----------LEKTTQLRAPLLIIAEDVTGEALATLVVN 198 (475)
Q Consensus 143 ~~~~~~~~~~Il~~~~~i~~-------------~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~~ 198 (475)
+|+++++||+|++++++|+. ++++.++ ++++.+.|++||+++++|++.++++|.++
T Consensus 224 ~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~ 303 (525)
T TIGR02344 224 KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA 303 (525)
T ss_pred CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC
Confidence 57889999999999999755 3555443 55888899999999999999999999987
Q ss_pred cccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccce-eEEEEE---ecceEEEEeCCCChHH
Q 011926 199 KLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDE 274 (475)
Q Consensus 199 ~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~ 274 (475)
+ |++ ++++++++|+|||++|||++++ ++++++++.+|+ |+.+++ +++++++|++|+++
T Consensus 304 ~------I~a-----v~~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-- 365 (525)
T TIGR02344 304 N------ISA-----IRRVRKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-- 365 (525)
T ss_pred C------ceE-----EecCCHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC--
Confidence 6 444 5688999999999999999999 788999999999 998886 67899999998764
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHH
Q 011926 275 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 353 (475)
Q Consensus 275 i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~ 353 (475)
..|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||
T Consensus 366 ---------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~ 412 (525)
T TIGR02344 366 ---------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEM 412 (525)
T ss_pred ---------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHH
Confidence 389999999999999999999999999999999997 9999999999
Q ss_pred HHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc-----CCCceeEecCCCcccccccCcc
Q 011926 354 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGV 428 (475)
Q Consensus 354 ~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~~~gI 428 (475)
+||.+|++++.+..+.+ ++++++|++||+.||++||+|||+|+.+++++|++ .+.++|+|+.+|+++||++.||
T Consensus 413 ~ls~~l~~~~~~~~~~~-~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV 491 (525)
T TIGR02344 413 AVSVYLAKKASKLEGVQ-QWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGI 491 (525)
T ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccc
Confidence 99999999887778875 89999999999999999999999999999999987 2567999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 429 IDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 429 ~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
|||+.||.++|+.|+|+|++|||||++|..+|+
T Consensus 492 ~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 492 WEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred eecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 999999999999999999999999999988774
No 22
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-76 Score=632.03 Aligned_cols=399 Identities=19% Similarity=0.278 Sum_probs=361.9
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC-----CHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----GRDDIK 78 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~-----~~~~l~ 78 (475)
-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.+.
T Consensus 73 a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~ 152 (522)
T TIGR02345 73 AKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLE 152 (522)
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999987 457899
Q ss_pred HHHHHhcc------CChhHHhHHHHHHHHhCCCC----ccc--cccCCCccchheeecceEEeecccCCccccCcccccc
Q 011926 79 AVATISAG------NDDLIGTMIADAIDKVGPDG----VLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIV 146 (475)
Q Consensus 79 ~va~ts~~------~~~~l~~li~~a~~~~~~~g----~I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~ 146 (475)
++|+|+++ ++++|++++++|+.++++++ .|+ ...|+++.|| ++++|++|+++|.+|+|. +|++
T Consensus 153 ~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~ 227 (522)
T TIGR02345 153 KCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPK 227 (522)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCc
Confidence 99999986 57999999999999998652 232 3589999999 899999999999999874 4678
Q ss_pred eecceeEEEeccccCC-------------HHh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccc
Q 011926 147 EFENARVLVTDQKISA-------------IKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 147 ~~~~~~Il~~~~~i~~-------------~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
+++||+|++++++|+. +++ +.++++++.+.|+++|+++++|++.++++|.++++
T Consensus 228 ~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I-- 305 (522)
T TIGR02345 228 KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNI-- 305 (522)
T ss_pred eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCc--
Confidence 8999999999998643 333 24567778889999999999999999999999873
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~i 279 (475)
. .++++.++++++++++|||++++ ++++++++.||+|+.++. +++++++|+|++++
T Consensus 306 ----~-----~~~~v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~------- 364 (522)
T TIGR02345 306 ----F-----CAGRVSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA------- 364 (522)
T ss_pred ----E-----EEecCCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-------
Confidence 3 35678899999999999999999 789999999999999984 57789999998654
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
..|||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++++
T Consensus 365 ----------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~ 416 (522)
T TIGR02345 365 ----------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKI 416 (522)
T ss_pred ----------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHH
Confidence 489999999999999999999999999999999996 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKV 434 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~v 434 (475)
|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++.+|++ ++.++|||+.+|++.||++.|||||+.|
T Consensus 417 l~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~v 495 (522)
T TIGR02345 417 LREHSKKIDGKQ-QLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLV 495 (522)
T ss_pred HHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHH
Confidence 999877777775 79999999999999999999999999999999987 3567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhHHhhcC
Q 011926 435 TRCALQNAASVAGMVLTTQAIVVEK 459 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~iD~iI~~~ 459 (475)
|+++|+.|+|+|++|||+|++|+.+
T Consensus 496 k~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 496 KKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999999999773
No 23
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-76 Score=627.31 Aligned_cols=397 Identities=20% Similarity=0.301 Sum_probs=358.5
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC-----CHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----GRDDIK 78 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~-----~~~~l~ 78 (475)
-+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ +.+.|.
T Consensus 71 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~ 150 (517)
T cd03336 71 AKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLL 150 (517)
T ss_pred HHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999884 246799
Q ss_pred HHHHHhcc------CChhHHhHHHHHHHHhCCC---Ccccc--ccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 79 AVATISAG------NDDLIGTMIADAIDKVGPD---GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 79 ~va~ts~~------~~~~l~~li~~a~~~~~~~---g~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
++|+|+++ ++++|++++++|+..++.. ..|++ .+|++++|| ++++|+++++++.+ .|+++
T Consensus 151 ~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~ 221 (517)
T cd03336 151 NIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKR 221 (517)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCe
Confidence 99998774 4689999999999998632 23443 589999999 89999999998654 25788
Q ss_pred ecceeEEEeccccC--------------CHHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccc
Q 011926 148 FENARVLVTDQKIS--------------AIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 148 ~~~~~Il~~~~~i~--------------~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
++||+|++++++|+ +++|+ .++++.+++.|++++++++.|++.++++|.+++
T Consensus 222 ~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~--- 298 (517)
T cd03336 222 IENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG--- 298 (517)
T ss_pred eccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC---
Confidence 99999999999865 45544 235778899999999999999999999999887
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~i 279 (475)
|++|+ ++++++|+|||++|||++++ ++++++++.||+|+.|+. +++++++|++|+++
T Consensus 299 ---I~av~-----~v~~~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------- 358 (517)
T cd03336 299 ---IMAIE-----HADFDGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG------- 358 (517)
T ss_pred ---cEEEe-----cCCHHHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCC-------
Confidence 56665 45577899999999999999 889999999999999973 57899999998653
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|++
T Consensus 359 ----------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~ 410 (517)
T cd03336 359 ----------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKA 410 (517)
T ss_pred ----------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKV 434 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~v 434 (475)
|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||||+.|
T Consensus 411 l~~~~~~~~~~~-~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~v 489 (517)
T cd03336 411 VEELAKKTPGKK-SLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKV 489 (517)
T ss_pred HHHHhhhCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHH
Confidence 999988777875 79999999999999999999999999999999987 4678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 435 TRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
|.++|+.|+|+|++|||||++|+.+|+
T Consensus 490 k~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 490 KRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 999999999999999999999999874
No 24
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-76 Score=629.50 Aligned_cols=398 Identities=21% Similarity=0.291 Sum_probs=361.1
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAV 80 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~v 80 (475)
+.+|++++|++||+++||||||+|+|+++|++++.+++++|+||..|++||+.|.+.++++|++++++++ +.+.|.++
T Consensus 63 ~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~v 142 (515)
T cd03338 63 AAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKS 142 (515)
T ss_pred HHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999886 78899999
Q ss_pred HHHhcc------CChhHHhHHHHHHHHhCCCCc----------cccccCCCccchheeecceEEeecccCCccccCcccc
Q 011926 81 ATISAG------NDDLIGTMIADAIDKVGPDGV----------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 144 (475)
Q Consensus 81 a~ts~~------~~~~l~~li~~a~~~~~~~g~----------I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 144 (475)
|+||++ +++.|++++++|+.++++++. |.++.|+++.|| ++++|++|+++|.+|++ |
T Consensus 143 a~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~ 215 (515)
T cd03338 143 ATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------G 215 (515)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------C
Confidence 999997 578999999999999988652 444689999999 99999999999999752 4
Q ss_pred cceecceeEEEeccccCC-------------H-----------HhhHHHHHHHHhcCCCEEEEeccC-----ChHHHHHH
Q 011926 145 IVEFENARVLVTDQKISA-------------I-----------KDIIPLLEKTTQLRAPLLIIAEDV-----TGEALATL 195 (475)
Q Consensus 145 ~~~~~~~~Il~~~~~i~~-------------~-----------~~l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l 195 (475)
|+.++||++++++++|+. + +++.++++++++.|+||||++++| ++.++++|
T Consensus 216 p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l 295 (515)
T cd03338 216 PTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFL 295 (515)
T ss_pred CccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHH
Confidence 777899999999987532 2 234577899999999999999998 88899999
Q ss_pred HHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCCh
Q 011926 196 VVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASK 272 (475)
Q Consensus 196 ~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~ 272 (475)
.+++ |+||+ ++++++|+|||++|||++++ ++++++++.||+|+.|++ +++++++|.+++++
T Consensus 296 ~~~~------I~av~-----~~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~ 359 (515)
T cd03338 296 AKLK------IMVVK-----DIEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNP 359 (515)
T ss_pred HHCC------ceEEe-----cCCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCCC
Confidence 8765 55654 78899999999999999999 889999999999999986 35688999988641
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchh
Q 011926 273 DEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAA 351 (475)
Q Consensus 273 ~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~ 351 (475)
++.|||+|||+|+.+++|++|+++||++++++++++| +|||||++
T Consensus 360 ----------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~ 405 (515)
T cd03338 360 ----------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAP 405 (515)
T ss_pred ----------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHH
Confidence 3589999999999999999999999999999999999 99999999
Q ss_pred HHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCc
Q 011926 352 LVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAG 427 (475)
Q Consensus 352 e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~g 427 (475)
|+++|++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|
T Consensus 406 e~~ls~~l~~~~~~~~~~~-~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~g 484 (515)
T cd03338 406 EIEIALQLSEWARTLTGVE-QYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEEN 484 (515)
T ss_pred HHHHHHHHHHHhccCCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcC
Confidence 9999999999877777764 89999999999999999999999999999999987 467899999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHchhHHhhc
Q 011926 428 VIDPAKVTRCALQNAASVAGMVLTTQAIVVE 458 (475)
Q Consensus 428 I~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~ 458 (475)
||||+.+|+++|+.|+|+|++|||||++|++
T Consensus 485 I~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 485 VVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred ceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999999864
No 25
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5e-76 Score=629.41 Aligned_cols=397 Identities=19% Similarity=0.288 Sum_probs=359.2
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCC-----HHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG-----RDDIK 78 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~-----~~~l~ 78 (475)
-+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++++ .+.|.
T Consensus 83 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~ 162 (533)
T PTZ00212 83 AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLL 162 (533)
T ss_pred HHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999998864 56899
Q ss_pred HHHHHhcc------CChhHHhHHHHHHHHhCCC---Ccc--ccccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 79 AVATISAG------NDDLIGTMIADAIDKVGPD---GVL--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 79 ~va~ts~~------~~~~l~~li~~a~~~~~~~---g~I--~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
++|+|+++ +.+.|++++++|+..+.+. ..| .+.+|++++|| ++++|+++++++.+ .|+++
T Consensus 163 ~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~ 233 (533)
T PTZ00212 163 NIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKR 233 (533)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCcc
Confidence 99998874 3588999999999988542 223 34689999999 89999999998654 26788
Q ss_pred ecceeEEEecccc--------------CCHHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccc
Q 011926 148 FENARVLVTDQKI--------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 148 ~~~~~Il~~~~~i--------------~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
++||||+++|++| ++++|+ .++++.+.+.|+++++++++|++.++++|.+++
T Consensus 234 i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~--- 310 (533)
T PTZ00212 234 LENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG--- 310 (533)
T ss_pred ccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC---
Confidence 9999999999986 555554 235778899999999999999999999999987
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i 279 (475)
|++|+ ++++++++|||++|||++++ ++++++++.||+|+.|+ ++++++++|++|+.
T Consensus 311 ---I~avr-----~v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-------- 369 (533)
T PTZ00212 311 ---IMAIE-----HADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-------- 369 (533)
T ss_pred ---CEEEe-----cCCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC--------
Confidence 45554 67789999999999999999 88999999999999998 67889999998864
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
++.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|++
T Consensus 370 ---------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~ 422 (533)
T PTZ00212 370 ---------------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANA 422 (533)
T ss_pred ---------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHH
Confidence 3589999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKV 434 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~v 434 (475)
|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||||+.|
T Consensus 423 L~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~v 501 (533)
T PTZ00212 423 VEELAKKVEGKK-SLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKV 501 (533)
T ss_pred HHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHH
Confidence 999987777875 79999999999999999999999999999999984 4678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 435 TRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
|.++|+.|+|+|++|||||++|..+|+
T Consensus 502 k~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 502 KLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 999999999999999999999998753
No 26
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-76 Score=631.01 Aligned_cols=393 Identities=23% Similarity=0.307 Sum_probs=355.4
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC----CHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GRDDIKA 79 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~----~~~~l~~ 79 (475)
-+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ +.+.|.+
T Consensus 79 akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 158 (526)
T cd03339 79 AKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQ 158 (526)
T ss_pred HHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999885 5778999
Q ss_pred HHHHhccC------ChhHHhHHHHHHHHhCCC-------Cccc--cccCCCccchheeecceEEeecccCCccccCcccc
Q 011926 80 VATISAGN------DDLIGTMIADAIDKVGPD-------GVLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 144 (475)
Q Consensus 80 va~ts~~~------~~~l~~li~~a~~~~~~~-------g~I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 144 (475)
+|+|+++. .+.|++++++|+..+.+. ..|+ ..+||+++|| ++++|++|+++|.+|+ |
T Consensus 159 ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~-------m 230 (526)
T cd03339 159 TAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQ-------M 230 (526)
T ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCC-------C
Confidence 99999863 478999999999888531 1233 3689999999 8999999999999986 5
Q ss_pred cceecceeEEEecccc-------------CCHHh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcc
Q 011926 145 IVEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL 200 (475)
Q Consensus 145 ~~~~~~~~Il~~~~~i-------------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~ 200 (475)
++.++||||+++++++ +++++ +.++++++.+.|+||||++++|++.++++|.++++
T Consensus 231 ~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I 310 (526)
T cd03339 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGL 310 (526)
T ss_pred CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 6678899999999864 44544 56779999999999999999999999999999884
Q ss_pred cccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---e--cceEEEEeCCCChHHH
Q 011926 201 RGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---R--KDSTTIIADAASKDEI 275 (475)
Q Consensus 201 ~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~--~~~~~~~~~~~~~~~i 275 (475)
.+|+ ++++++|+|||++|||++++ ++++++++.||+|+.|+. + +++++||++|+++
T Consensus 311 ------~av~-----~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~--- 371 (526)
T cd03339 311 ------PAVR-----WVGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS--- 371 (526)
T ss_pred ------EEEE-----eCCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC---
Confidence 4544 56789999999999999999 889999999999999973 3 4688999998764
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHH
Q 011926 276 QARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVH 354 (475)
Q Consensus 276 ~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ 354 (475)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+
T Consensus 372 --------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 372 --------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 489999999999999999999999999999999999 99999999999
Q ss_pred HhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc-----CCCceeEecCCCcccccccCccc
Q 011926 355 LSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGVI 429 (475)
Q Consensus 355 ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~~~gI~ 429 (475)
+|++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||
T Consensus 420 ls~~l~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~ 498 (526)
T cd03339 420 CSLAVEKAADKCSGIE-QYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVF 498 (526)
T ss_pred HHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCce
Confidence 9999999887777865 89999999999999999999999999999999983 35679999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHchhHHh
Q 011926 430 DPAKVTRCALQNAASVAGMVLTTQAIV 456 (475)
Q Consensus 430 Dp~~vk~~~l~~A~e~a~~lL~iD~iI 456 (475)
||+.||+++|+.|+|+|++|||||++|
T Consensus 499 dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 499 ETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred ecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 999999999999999999999999987
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-76 Score=626.58 Aligned_cols=398 Identities=20% Similarity=0.296 Sum_probs=357.9
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAV 80 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~v 80 (475)
..+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++ +.+.|.++
T Consensus 64 ~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~v 143 (517)
T TIGR02342 64 AAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKS 143 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999987 78889999
Q ss_pred HHHhcc------CChhHHhHHHHHHHHhCC---CCc-----ccc--ccCCCccchheeecceEEeecccCCccccCcccc
Q 011926 81 ATISAG------NDDLIGTMIADAIDKVGP---DGV-----LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 144 (475)
Q Consensus 81 a~ts~~------~~~~l~~li~~a~~~~~~---~g~-----I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 144 (475)
|+|+++ +.+.|++++++|+..+++ ++. |++ ..|+++.|| ++++|++|+++|.++ .+|
T Consensus 144 a~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~m 216 (517)
T TIGR02342 144 ATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGG 216 (517)
T ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCC
Confidence 999986 356789999999999976 232 333 478999999 999999999999874 257
Q ss_pred cceecceeEEEeccccC-------------CHH-----------hhHHHHHHHHhcCCCEEEEeccC-----ChHHHHHH
Q 011926 145 IVEFENARVLVTDQKIS-------------AIK-----------DIIPLLEKTTQLRAPLLIIAEDV-----TGEALATL 195 (475)
Q Consensus 145 ~~~~~~~~Il~~~~~i~-------------~~~-----------~l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l 195 (475)
|+.++||+|++++++|+ +++ ++.++++++.+.|+|||+|+++| ++.++++|
T Consensus 217 pk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l 296 (517)
T TIGR02342 217 PTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFL 296 (517)
T ss_pred CccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHH
Confidence 88899999999998754 222 24567889999999999999999 88999999
Q ss_pred HHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE-E--ecceEEEEeCCCCh
Q 011926 196 VVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT-I--RKDSTTIIADAASK 272 (475)
Q Consensus 196 ~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~-i--~~~~~~~~~~~~~~ 272 (475)
.+++ |+||+ ++++++|+|||++|||++++ +++++++..||+|+.|+ + +++.+++|.+++++
T Consensus 297 ~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~ 360 (517)
T TIGR02342 297 AKMK------IMVVK-----DIEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNA 360 (517)
T ss_pred hhCC------ceEEe-----cCCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCCC
Confidence 8765 56654 78899999999999999999 78899999999999998 3 46678888887652
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchh
Q 011926 273 DEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAA 351 (475)
Q Consensus 273 ~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~ 351 (475)
++.|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++
T Consensus 361 ----------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~ 406 (517)
T TIGR02342 361 ----------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAP 406 (517)
T ss_pred ----------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHH
Confidence 4689999999999999999999999999999999997 99999999
Q ss_pred HHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCc
Q 011926 352 LVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAG 427 (475)
Q Consensus 352 e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~g 427 (475)
||++|++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|+++||++.|
T Consensus 407 e~~ls~~l~~~~~~~~~~~-~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~g 485 (517)
T TIGR02342 407 EIEIAIKLSKLARTMKGVE-SYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEE 485 (517)
T ss_pred HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhcc
Confidence 9999999999987777875 89999999999999999999999999999999987 366899999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHchhHHhhc
Q 011926 428 VIDPAKVTRCALQNAASVAGMVLTTQAIVVE 458 (475)
Q Consensus 428 I~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~ 458 (475)
||||+.||.++|+.|+|+|++|||||++|+.
T Consensus 486 I~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 486 VLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred ceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 9999999999999999999999999999875
No 28
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.3e-76 Score=628.04 Aligned_cols=395 Identities=23% Similarity=0.305 Sum_probs=356.1
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC----CHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GRDDIKA 79 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~----~~~~l~~ 79 (475)
-+|++++|++||+++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ +.+.|.+
T Consensus 83 akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 162 (532)
T TIGR02343 83 AKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQ 162 (532)
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999874 3678999
Q ss_pred HHHHhccC------ChhHHhHHHHHHHHhCCC--C-----ccc--cccCCCccchheeecceEEeecccCCccccCcccc
Q 011926 80 VATISAGN------DDLIGTMIADAIDKVGPD--G-----VLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 144 (475)
Q Consensus 80 va~ts~~~------~~~l~~li~~a~~~~~~~--g-----~I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 144 (475)
+|+|+++. .+.|++++++|+..+... + .|+ ..+||+++|| ++++|++|+++|.+|+ |
T Consensus 163 ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m 234 (532)
T TIGR02343 163 AAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------M 234 (532)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------C
Confidence 99999862 568999999999988531 1 233 3689999999 9999999999999985 5
Q ss_pred cceecceeEEEecccc-------------CCHHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcc
Q 011926 145 IVEFENARVLVTDQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL 200 (475)
Q Consensus 145 ~~~~~~~~Il~~~~~i-------------~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~ 200 (475)
++.++||||+++++++ ++++|+ .++++++.+.|+||||++++|++.++++|.+|++
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 6778999999999864 455555 6779999999999999999999999999999874
Q ss_pred cccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ec--ceEEEEeCCCChHHH
Q 011926 201 RGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RK--DSTTIIADAASKDEI 275 (475)
Q Consensus 201 ~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~--~~~~~~~~~~~~~~i 275 (475)
.+| +++++++|+|||++|||++++ ++++++++.||+|++|+. +. +++++|++|+++
T Consensus 315 ------~~v-----~~~~~~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~--- 375 (532)
T TIGR02343 315 ------PAV-----RWVGGHELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS--- 375 (532)
T ss_pred ------EEE-----EcCCHHHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC---
Confidence 344 466789999999999999999 899999999999999983 33 578999998764
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHH
Q 011926 276 QARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVH 354 (475)
Q Consensus 276 ~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ 354 (475)
..|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||+
T Consensus 376 --------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 376 --------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 389999999999999999999999999999999997 99999999999
Q ss_pred HhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc-----CCCceeEecCCCcccccccCccc
Q 011926 355 LSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGVI 429 (475)
Q Consensus 355 ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~~~gI~ 429 (475)
+|++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ .+.++|+|+.+|+++||++.|||
T Consensus 424 ls~~l~~~~~~~~~~~-~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~ 502 (532)
T TIGR02343 424 CSLAVSQEADKYSGVE-QYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVF 502 (532)
T ss_pred HHHHHHHHhccCCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCe
Confidence 9999999887778875 89999999999999999999999999999999985 25679999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHchhHHhhc
Q 011926 430 DPAKVTRCALQNAASVAGMVLTTQAIVVE 458 (475)
Q Consensus 430 Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~ 458 (475)
||+.||.++|+.|+|+|++|||||++|..
T Consensus 503 Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 503 ETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 99999999999999999999999999953
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.6e-75 Score=619.17 Aligned_cols=400 Identities=20% Similarity=0.295 Sum_probs=356.1
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccc-cCC---CHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR-PIE---GRDDIKA 79 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~-~i~---~~~~l~~ 79 (475)
.+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++ ++. +.+.+.+
T Consensus 74 akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 153 (531)
T TIGR02346 74 AKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIK 153 (531)
T ss_pred HHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999886 764 4678999
Q ss_pred HHHHhcc-----CChhHHhHHHHHHHHhCCCC--cccc-------ccCCCccchheeecceEEeecccCCccccCccccc
Q 011926 80 VATISAG-----NDDLIGTMIADAIDKVGPDG--VLSI-------ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI 145 (475)
Q Consensus 80 va~ts~~-----~~~~l~~li~~a~~~~~~~g--~I~v-------~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~ 145 (475)
+++|+++ ++++|++++++|+.++++++ .+.+ ..|++++|+ ++++|++|++++. .++
T Consensus 154 i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~ 223 (531)
T TIGR02346 154 ALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSV 223 (531)
T ss_pred HHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCc
Confidence 9998874 48999999999999998754 3322 489999998 9999999999842 246
Q ss_pred ceecceeEEEecccc-------------CCHHh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhccc
Q 011926 146 VEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLR 201 (475)
Q Consensus 146 ~~~~~~~Il~~~~~i-------------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~ 201 (475)
+.++||||+++++++ +++++ +.++++++.+.|+||||++++|++.++++|.+++
T Consensus 224 k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~-- 301 (531)
T TIGR02346 224 KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN-- 301 (531)
T ss_pred eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC--
Confidence 789999999999984 23333 4577999999999999999999999999999766
Q ss_pred ccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCChHHHHHH
Q 011926 202 GILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQAR 278 (475)
Q Consensus 202 g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~ 278 (475)
|+||+. ++..+|+|||.+|||++++ +++++++++||+|++|++ +++++.+|.+++.
T Consensus 302 ----I~av~~-----~~~~~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~------- 360 (531)
T TIGR02346 302 ----IMVLKI-----PSKFELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG------- 360 (531)
T ss_pred ----cEEEec-----CCHHHHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC-------
Confidence 667665 4567999999999999998 788899899999999985 4678899987652
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhH
Q 011926 279 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSD 357 (475)
Q Consensus 279 i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~ 357 (475)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++||++|.
T Consensus 361 ---------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~ 413 (531)
T TIGR02346 361 ---------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELAL 413 (531)
T ss_pred ---------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHH
Confidence 24689999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCc--ccccccCccccc
Q 011926 358 HVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDK--YENMLQAGVIDP 431 (475)
Q Consensus 358 ~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~--i~d~~~~gI~Dp 431 (475)
+|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++.+|++ ++.++|||+.+|+ ++||++.|||||
T Consensus 414 ~L~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp 492 (531)
T TIGR02346 414 RLKKYANKLPGLD-QYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDN 492 (531)
T ss_pred HHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEc
Confidence 9999887777764 89999999999999999999999999999999976 3567999999999 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCC
Q 011926 432 AKVTRCALQNAASVAGMVLTTQAIVVEKPKPKT 464 (475)
Q Consensus 432 ~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~ 464 (475)
+.||+++|+.|+|+|++|||||++|..+|...+
T Consensus 493 ~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~ 525 (531)
T TIGR02346 493 LATKKWAIKLATEAAVTVLRVDQIIMAKPAGGP 525 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCC
Confidence 999999999999999999999999998764433
No 30
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-74 Score=616.29 Aligned_cols=398 Identities=21% Similarity=0.317 Sum_probs=356.7
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCC-----HHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG-----RDDIK 78 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~-----~~~l~ 78 (475)
-+|++++|++||+++||||||+|+|+++||+++++|+++|+||+.|++||+.|.+.++++|+++++++++ .+.|.
T Consensus 72 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~ 151 (519)
T TIGR02341 72 AKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLL 151 (519)
T ss_pred HHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999852 46899
Q ss_pred HHHHHhcc------CChhHHhHHHHHHHHhCCC---Ccccc--ccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 79 AVATISAG------NDDLIGTMIADAIDKVGPD---GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 79 ~va~ts~~------~~~~l~~li~~a~~~~~~~---g~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
++|+|+++ +.+.|++++++|+..+... ..|++ .+|++++|| ++++|+++++.+.+ .|+++
T Consensus 152 ~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~ 222 (519)
T TIGR02341 152 NIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKR 222 (519)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCcee
Confidence 99999875 2578999999999988432 23554 489999999 89999999998644 25778
Q ss_pred ecceeEEEeccccCC--------------HHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccc
Q 011926 148 FENARVLVTDQKISA--------------IKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 148 ~~~~~Il~~~~~i~~--------------~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
++||+|+++|++|+. ++++ .++++.+++.|++++++++.|++.++++|.+++
T Consensus 223 ~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~--- 299 (519)
T TIGR02341 223 IENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG--- 299 (519)
T ss_pred eccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC---
Confidence 999999999998753 3233 234778899999999999999999999999877
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~i 279 (475)
|++++ ++++++|+|||++|||++++ ++++++++.||+|+.|+. +++++++|.+|+++
T Consensus 300 ---I~~v~-----~~~~~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------- 359 (519)
T TIGR02341 300 ---VMAIE-----HADFEGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG------- 359 (519)
T ss_pred ---cEEEe-----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCCC-------
Confidence 56665 45578999999999999999 788999899999999873 67899999998753
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
+.|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|++
T Consensus 360 ----------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~ 411 (519)
T TIGR02341 360 ----------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKA 411 (519)
T ss_pred ----------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHH
Confidence 589999999999999999999999999999999997 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKV 434 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~v 434 (475)
|++++.+..+++ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||||+.|
T Consensus 412 l~~~~~~~~~~~-~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~v 490 (519)
T TIGR02341 412 VAVEAQKVPGKE-ALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKV 490 (519)
T ss_pred HHHHhhcCCChH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHH
Confidence 999887777775 79999999999999999999999999999999987 3567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhHHhhcCCCC
Q 011926 435 TRCALQNAASVAGMVLTTQAIVVEKPKP 462 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~iD~iI~~~p~~ 462 (475)
|.++|+.|+|+|++|||||++|+.+|+.
T Consensus 491 k~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 491 KRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 9999999999999999999999999853
No 31
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.9e-75 Score=614.88 Aligned_cols=377 Identities=23% Similarity=0.331 Sum_probs=345.8
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVA 81 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va 81 (475)
-+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ |.+.+.+++
T Consensus 72 a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~ 151 (480)
T cd03337 72 AKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKII 151 (480)
T ss_pred HHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999987 788899999
Q ss_pred HHhcc------CChhHHhHHHHHHHHhCCC--C---------cccc--ccCCCccchheeecceEEeecccCCccccCcc
Q 011926 82 TISAG------NDDLIGTMIADAIDKVGPD--G---------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 142 (475)
Q Consensus 82 ~ts~~------~~~~l~~li~~a~~~~~~~--g---------~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 142 (475)
+|+++ |.+.|++++++|+..++++ + +|++ .+|++..|| ++++|++|++++.+|
T Consensus 152 ~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~------- 223 (480)
T cd03337 152 KSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP------- 223 (480)
T ss_pred HHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------
Confidence 99987 5679999999999999764 2 1333 579999998 999999999999886
Q ss_pred cccceecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHH
Q 011926 143 KLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALL 222 (475)
Q Consensus 143 ~~~~~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l 222 (475)
+|+++++||+|++++++|+. ||+++++|++.++++|.+++ |++|+ ++++++|
T Consensus 224 ~m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~L 275 (480)
T cd03337 224 KMRRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKAG------ITALR-----RVRKTDN 275 (480)
T ss_pred CCCcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHCC------cEEEE-----eCCHHHH
Confidence 58889999999999999886 99999999999999999987 45554 6889999
Q ss_pred HHHHHHhCCeEeccccCccccCCCccccce-eEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHH
Q 011926 223 QDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 298 (475)
Q Consensus 223 ~~la~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l 298 (475)
+|||++|||++++ ++++++++.||+ |+.++. +++++++|++|+++
T Consensus 276 ~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------- 324 (480)
T cd03337 276 NRIARACGATIVN-----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-------------------------- 324 (480)
T ss_pred HHHHHHHCCEEec-----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC--------------------------
Confidence 9999999999999 788999999999 455543 56789999998764
Q ss_pred HHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHH
Q 011926 299 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADI 377 (475)
Q Consensus 299 ~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~ 377 (475)
+.|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||++|++|++++.+..+.+ ++++++
T Consensus 325 ---------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~-~~~~~~ 394 (480)
T cd03337 325 ---------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVE-QWPYKA 394 (480)
T ss_pred ---------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHH-HHHHHH
Confidence 489999999999999999999999999999999997 999999999999999999887778875 799999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhHHHhhhcC-----CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHch
Q 011926 378 VQKALVAPASLIAHNAGVEGEVVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTT 452 (475)
Q Consensus 378 ~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~i 452 (475)
|++||+.||++|++|||+|+.+++.+|++. +.++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++||||
T Consensus 395 ~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 395 VASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999872 467999999999999999999999999999999999999999999
Q ss_pred hHHhh
Q 011926 453 QAIVV 457 (475)
Q Consensus 453 D~iI~ 457 (475)
|++|.
T Consensus 475 d~ii~ 479 (480)
T cd03337 475 DDIVS 479 (480)
T ss_pred hheec
Confidence 99884
No 32
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-73 Score=602.62 Aligned_cols=407 Identities=38% Similarity=0.553 Sum_probs=353.0
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATI 83 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~t 83 (475)
-+|++++|.+||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.+.++|++++.++++.+.-.+++.+
T Consensus 67 akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t 146 (524)
T COG0459 67 AKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAIT 146 (524)
T ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999854411155555
Q ss_pred hc-----cCChhHHhHHHHHHHHhCC-----CCcccc-ccCCCccchheeecceEEeecccCCccccCccccc-ceecce
Q 011926 84 SA-----GNDDLIGTMIADAIDKVGP-----DGVLSI-ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI-VEFENA 151 (475)
Q Consensus 84 s~-----~~~~~l~~li~~a~~~~~~-----~g~I~v-~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~-~~~~~~ 151 (475)
++ +.+++|++++++|+.+++. ++.+.+ +.|++..|+ ++++|++|+++|.+||| || +.++||
T Consensus 147 ~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~------~~~~~~e~~ 219 (524)
T COG0459 147 SVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYF------MPDKRLENP 219 (524)
T ss_pred eeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCC------CCccccccc
Confidence 43 4568999999999999998 665555 566777777 99999999999999987 55 789999
Q ss_pred eEEEeccccCCHH-------------hh------------HHHHHHHHhcCCC-EEEEeccCChHHHHHHHHhcccccce
Q 011926 152 RVLVTDQKISAIK-------------DI------------IPLLEKTTQLRAP-LLIIAEDVTGEALATLVVNKLRGILN 205 (475)
Q Consensus 152 ~Il~~~~~i~~~~-------------~l------------~~~le~i~~~~~~-lvi~~~~i~~~al~~l~~~~~~g~~~ 205 (475)
+|+++|++|+..+ ++ ..++..+.+.|.+ +++++++|+|.++++|.++++
T Consensus 220 ~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I----- 294 (524)
T COG0459 220 KILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI----- 294 (524)
T ss_pred eEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc-----
Confidence 9999999866432 22 3456667788999 889999999999999998773
Q ss_pred EEEeeCCCcccchHHHH-HHHHHHhCCeEeccccCccccCCCccccce--eEEEEEecceEEEEeCCCChHHHHHHHHHH
Q 011926 206 VAAIKAPGFGERRKALL-QDIAIVTGAEFQAGDLGLLIENTSVEQLGT--ARKVTIRKDSTTIIADAASKDEIQARIAQL 282 (475)
Q Consensus 206 v~av~~~~~~~~~~~~l-~~la~~tG~~ii~~~~~~~~~~~~~~~lG~--~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l 282 (475)
...+++.++++ ++|+.++||++++ .+++.++..+|. |++++..+
T Consensus 295 ------lt~~~v~~~dl~~~l~~~~ga~~v~-----~~~d~t~~~~G~~~~~~ve~~~---------------------- 341 (524)
T COG0459 295 ------LTGRRVKKEDLGERLAKLGGAKIVS-----VLKDLTTIVLGEGAAGLVEETK---------------------- 341 (524)
T ss_pred ------eecceecchhhHHHHHHccCceEEe-----ecccCceeecCccccceEEEee----------------------
Confidence 44678889999 7999999999999 889999999999 99887420
Q ss_pred HHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhh
Q 011926 283 KKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPA 361 (475)
Q Consensus 283 ~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~ 361 (475)
.++++++.+.+|.+. .+++|||+|||+|+.+++|++|+++|||+++++++++| +|||||++|+++++.|++
T Consensus 342 -------~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~ 413 (524)
T COG0459 342 -------TGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLRE 413 (524)
T ss_pred -------ccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHh
Confidence 122333444445555 67899999999999999999999999999999999999 999999999999999998
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcCC--CceeEecCCCcc-cccccCcccccHHHHHHH
Q 011926 362 IKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSE--WTTGYNAMTDKY-ENMLQAGVIDPAKVTRCA 438 (475)
Q Consensus 362 ~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~--~~~G~d~~~g~i-~d~~~~gI~Dp~~vk~~~ 438 (475)
++.+..+.++|+++++|++||+.||++|++|||+|+.+++++|++.+ +++|||+.+|++ .||++.|||||+.||+++
T Consensus 414 ~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~a 493 (524)
T COG0459 414 YAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSA 493 (524)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHH
Confidence 84444442468999999999999999999999999999999999965 369999999999 789999999999999999
Q ss_pred HHHHHHHHHHHHchhHHhhcCCCCC
Q 011926 439 LQNAASVAGMVLTTQAIVVEKPKPK 463 (475)
Q Consensus 439 l~~A~e~a~~lL~iD~iI~~~p~~~ 463 (475)
|++|+|+|+++||+|++|..+|+..
T Consensus 494 l~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 494 LKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999999865
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-72 Score=595.03 Aligned_cols=378 Identities=36% Similarity=0.523 Sum_probs=348.6
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP--IEGRDDIKAV 80 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~--i~~~~~l~~v 80 (475)
.-++++++|++||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ +.+.+.+.++
T Consensus 63 ~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i 142 (464)
T cd00309 63 AAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKV 142 (464)
T ss_pred HHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999998 5688899999
Q ss_pred HHHhcc------CChhHHhHHHHHHHHhCC------CCcccc--ccCCCccchheeecceEEeecccCCccccCcccccc
Q 011926 81 ATISAG------NDDLIGTMIADAIDKVGP------DGVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIV 146 (475)
Q Consensus 81 a~ts~~------~~~~l~~li~~a~~~~~~------~g~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~ 146 (475)
++|+++ +++++++++++|+.++++ .+.|++ .+||++.|| ++++|++|+++|.+|+ |++
T Consensus 143 a~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~ 214 (464)
T cd00309 143 ATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPK 214 (464)
T ss_pred hHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------Cce
Confidence 999998 799999999999999988 456665 589999999 8999999999999986 467
Q ss_pred eecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHH
Q 011926 147 EFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIA 226 (475)
Q Consensus 147 ~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la 226 (475)
+++||+|++++++|+. +|+++++|++.++++|.+++ +++|+ ++++++|+|||
T Consensus 215 ~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~~------I~~v~-----~~~~~~L~~Ia 266 (464)
T cd00309 215 RLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKLG------IMAVR-----RVRKEDLERIA 266 (464)
T ss_pred eecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHCC------eEEEE-----eCCHHHHHHHH
Confidence 8999999999999987 88888899999999999866 56654 57899999999
Q ss_pred HHhCCeEeccccCccccCCCccccceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 011926 227 IVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIA 303 (475)
Q Consensus 227 ~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~ 303 (475)
++|||++++ ++++++++.+|+|+.+++ +++++++|.+++.
T Consensus 267 ~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-------------------------------- 309 (464)
T cd00309 267 KATGATIVS-----RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-------------------------------- 309 (464)
T ss_pred HHhCCEEec-----ccccCCcccCccccEEEEEEEcCeeEEEEEecCC--------------------------------
Confidence 999999999 788898999999999985 4668888988754
Q ss_pred HhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHH
Q 011926 304 KLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKAL 382 (475)
Q Consensus 304 ~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL 382 (475)
++.|||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++++|++++.+..+.+ ++++++|++||
T Consensus 310 ---~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~-~~~~~~~a~aL 385 (464)
T cd00309 310 ---GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKE-QLGIEAFADAL 385 (464)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHH
Confidence 3589999999999999999999999999999999997 999999999999999999887777764 89999999999
Q ss_pred HHHHHHHHHHcCCChhhHHHhhhcC----CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhh
Q 011926 383 VAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 457 (475)
Q Consensus 383 ~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~ 457 (475)
+.||++|++|||+|+.+++.+|++. ..++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 386 ~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 386 EVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999999999999999999873 35789999999999999999999999999999999999999999999984
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-72 Score=593.81 Aligned_cols=380 Identities=21% Similarity=0.293 Sum_probs=342.9
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhcccc-CC---CHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP-IE---GRDDIKA 79 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~-i~---~~~~l~~ 79 (475)
.+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +. +.+.+.+
T Consensus 64 a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 143 (472)
T cd03341 64 AKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSK 143 (472)
T ss_pred HHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999998865 43 5667889
Q ss_pred HHHHhcc-----CChhHHhHHHHHHHHhCCC--Cccc-------cccCCCccchheeecceEEeecccCCccccCccccc
Q 011926 80 VATISAG-----NDDLIGTMIADAIDKVGPD--GVLS-------IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI 145 (475)
Q Consensus 80 va~ts~~-----~~~~l~~li~~a~~~~~~~--g~I~-------v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~ 145 (475)
+++|+++ ++++|++++++|+.+++++ |.+. ..+|+++.|| ++++|++|++.+. .++
T Consensus 144 i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~ 213 (472)
T cd03341 144 ALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSV 213 (472)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCc
Confidence 9988863 5789999999999999875 4332 2489999999 9999999987532 244
Q ss_pred ceecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHH
Q 011926 146 VEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDI 225 (475)
Q Consensus 146 ~~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~l 225 (475)
++++||+|++++++|+. |+||||++++|++.++++|.+++ |++|+. +++++|+||
T Consensus 214 ~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~~~------I~av~~-----~~~~~Le~I 268 (472)
T cd03341 214 KRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNKYG------IMVIKI-----NSKFELRRL 268 (472)
T ss_pred eeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHHCC------eEEEEe-----CCHHHHHHH
Confidence 78999999999999887 89999999999999999998766 677664 458899999
Q ss_pred HHHhCCeEeccccCccccCCCccccceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011926 226 AIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERI 302 (475)
Q Consensus 226 a~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~ 302 (475)
|++|||++++ ++++++++++|+|++|++. ++++++|.++++.
T Consensus 269 a~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------------ 313 (472)
T cd03341 269 CRTVGATPLP-----RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED------------------------------ 313 (472)
T ss_pred HHHhCCEEec-----ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC------------------------------
Confidence 9999999999 7888888999999999864 4899999987541
Q ss_pred HHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHH
Q 011926 303 AKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKA 381 (475)
Q Consensus 303 ~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~A 381 (475)
++.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++.+..+.+ ++++++|++|
T Consensus 314 ----~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~-~~~~~~~a~a 388 (472)
T cd03341 314 ----SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLE-QYAIKKFAEA 388 (472)
T ss_pred ----CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHH
Confidence 3589999999999999999999999999999999999 999999999999999999877777764 8999999999
Q ss_pred HHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCC--cccccccCcccccHHHHHHHHHHHHHHHHHHHchhHH
Q 011926 382 LVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTD--KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 455 (475)
Q Consensus 382 L~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g--~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~i 455 (475)
|+.||++|++|||+|+.+++.+|+. ++.++|||+.+| ++.||++.|||||+.||+++|+.|+|+|++|||||++
T Consensus 389 l~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 468 (472)
T cd03341 389 FEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQI 468 (472)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcce
Confidence 9999999999999999999999975 256799999999 9999999999999999999999999999999999999
Q ss_pred hhc
Q 011926 456 VVE 458 (475)
Q Consensus 456 I~~ 458 (475)
|+.
T Consensus 469 i~~ 471 (472)
T cd03341 469 IMA 471 (472)
T ss_pred eec
Confidence 865
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.4e-69 Score=576.22 Aligned_cols=397 Identities=28% Similarity=0.440 Sum_probs=362.3
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCH-HHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR-DDIKAVAT 82 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~-~~l~~va~ 82 (475)
.+++++++++||+++||||||+|+|+++||+++.+++++|+||..|++||+.+.+.+++.|+++++++++. +.++++++
T Consensus 45 ~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~ 124 (485)
T PF00118_consen 45 AKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAK 124 (485)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHH
T ss_pred hhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999866 89999999
Q ss_pred HhccCC------hhHHhHHHHHHHHhCCC---Cccc--cccCCCccchheeecceEEeecccCCccccCcccccceecce
Q 011926 83 ISAGND------DLIGTMIADAIDKVGPD---GVLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENA 151 (475)
Q Consensus 83 ts~~~~------~~l~~li~~a~~~~~~~---g~I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~ 151 (475)
|+++.+ +.|++++++|+..+..+ +.+. ...|++.+|| ++++|++|++++.++ .|+++++||
T Consensus 125 t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~ 196 (485)
T PF00118_consen 125 TSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENP 196 (485)
T ss_dssp HHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESE
T ss_pred ccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhcccccccc-ccccceeeecccccc-------ccccccccc
Confidence 999765 89999999999444322 1232 3678899999 899999999999886 477889999
Q ss_pred eEEEeccccCCHHh-----------------------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEE
Q 011926 152 RVLVTDQKISAIKD-----------------------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAA 208 (475)
Q Consensus 152 ~Il~~~~~i~~~~~-----------------------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~a 208 (475)
+|++++++|+.... +.++++++.+.|+++||++++|++.++++|.++++
T Consensus 197 ~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I-------- 268 (485)
T PF00118_consen 197 KILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI-------- 268 (485)
T ss_dssp EEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH--------
T ss_pred eEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh--------
Confidence 99999999877665 77899999999999999999999999999999885
Q ss_pred eeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEE---EEecceEEEEeC--CCChHHHHHHHHHHH
Q 011926 209 IKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTTIIAD--AASKDEIQARIAQLK 283 (475)
Q Consensus 209 v~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~--~~~~~~i~~~i~~l~ 283 (475)
.++.++++++|++|+++||+++++ ++++++++.+|+|+.+ +++++++++|++ +..
T Consensus 269 ---~~i~~v~~~~l~~i~~~tg~~ii~-----~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~------------ 328 (485)
T PF00118_consen 269 ---LVIRRVSKEDLERIARATGASIIS-----SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLS------------ 328 (485)
T ss_dssp ---EEESSEHHHHHHHHHHHHTSBEBS-----SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESS------------
T ss_pred ---hccccchHHHHHhhhcccCCcEec-----ccccccchhhhhhhhhhhcccccccccccccccccc------------
Confidence 235678999999999999999999 7788888889999999 567899999983 432
Q ss_pred HHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhh
Q 011926 284 KELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAI 362 (475)
Q Consensus 284 ~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~ 362 (475)
+..+||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++|+++|+++
T Consensus 329 -----------------------~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~ 385 (485)
T PF00118_consen 329 -----------------------SKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKY 385 (485)
T ss_dssp -----------------------SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHH
T ss_pred -----------------------cCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHh
Confidence 4689999999999999999999999999999999988 9999999999999999998
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc---CCCceeEecCCCcccccccCcccccHHHHHHHH
Q 011926 363 KDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD---SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 439 (475)
Q Consensus 363 ~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~---~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l 439 (475)
+.+.++. +++++++|++||+.||++|++|||+|+.+++++|+. .++++|+|+.+|++.||++.|||||+.+|.++|
T Consensus 386 ~~~~~~~-~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l 464 (485)
T PF00118_consen 386 AKSLSGK-EQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISAL 464 (485)
T ss_dssp HHCSSSH-HHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHH
T ss_pred hhcccCc-hhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHH
Confidence 8877776 489999999999999999999999999999999988 567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhHHhhcCC
Q 011926 440 QNAASVAGMVLTTQAIVVEKP 460 (475)
Q Consensus 440 ~~A~e~a~~lL~iD~iI~~~p 460 (475)
+.|+|+|++|||||++|..+|
T Consensus 465 ~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 465 KSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999886
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-69 Score=518.53 Aligned_cols=401 Identities=19% Similarity=0.307 Sum_probs=360.5
Q ss_pred HHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC-C----HHHHHH
Q 011926 5 DCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-G----RDDIKA 79 (475)
Q Consensus 5 ~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~-~----~~~l~~ 79 (475)
+.+.+.|+-||+|+|||||||+||+++||++|.+|+.+.+||+.|++||+.|...+++.|.+.++... | +++|.+
T Consensus 77 kvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~ 156 (527)
T KOG0363|consen 77 KVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLK 156 (527)
T ss_pred hheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999887654 2 468999
Q ss_pred HHHHhcc------CChhHHhHHHHHHHHhCCCCc-----cccccCCCccchheeecceEEeecccCCccccCccccccee
Q 011926 80 VATISAG------NDDLIGTMIADAIDKVGPDGV-----LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEF 148 (475)
Q Consensus 80 va~ts~~------~~~~l~~li~~a~~~~~~~g~-----I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~ 148 (475)
+|+|+++ ..++|++++++|+.++...++ |.+..||+++|| ++=+|+.+++.+-- ..|+.+
T Consensus 157 iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkri 227 (527)
T KOG0363|consen 157 IARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRI 227 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccc
Confidence 9999874 368999999999999866543 344789999999 79999999986532 357789
Q ss_pred cceeEEEeccccCC--------------H---H--------hhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhccccc
Q 011926 149 ENARVLVTDQKISA--------------I---K--------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 203 (475)
Q Consensus 149 ~~~~Il~~~~~i~~--------------~---~--------~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~ 203 (475)
+||+||+-|.++.+ . . .+..+++++.++|+|+.|..+=|.++..++|...+
T Consensus 228 ena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag---- 303 (527)
T KOG0363|consen 228 ENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG---- 303 (527)
T ss_pred cccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC----
Confidence 99999999986432 1 1 24578999999999999999999999999999876
Q ss_pred ceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHHH
Q 011926 204 LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIA 280 (475)
Q Consensus 204 ~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i~ 280 (475)
|+++. +.+-+-.|||+..|||.+.| ++++++...||+|+.++ ++++++..|+|++.
T Consensus 304 --i~aIE-----HADFdGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~--------- 362 (527)
T KOG0363|consen 304 --IMAIE-----HADFDGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL--------- 362 (527)
T ss_pred --cceee-----cccchhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc---------
Confidence 34443 45557789999999999999 89999999999999987 69999999999864
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhh
Q 011926 281 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHV 359 (475)
Q Consensus 281 ~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L 359 (475)
|..|||++||+|++++||.+|++|||||++...+++. ++.|||+.||.+++.+
T Consensus 363 --------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av 416 (527)
T KOG0363|consen 363 --------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAV 416 (527)
T ss_pred --------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHH
Confidence 4479999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCcccccHHHH
Q 011926 360 PAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVT 435 (475)
Q Consensus 360 ~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk 435 (475)
.+++...+|++ ..++++|++||..+|.+||.|+|||+.+++++||+ +..++|+|+.+|++.||.+.||+|++.+|
T Consensus 417 ~~~A~~~pGke-a~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK 495 (527)
T KOG0363|consen 417 DKEAQETPGKE-ALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVK 495 (527)
T ss_pred HHHHhhCCchh-hHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHH
Confidence 99999999986 79999999999999999999999999999999998 36789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhHHhhcCCCCCCCC
Q 011926 436 RCALQNAASVAGMVLTTQAIVVEKPKPKTPV 466 (475)
Q Consensus 436 ~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~ 466 (475)
...+.+|.|+|.+|||+|.||.+.|+.+.|.
T Consensus 496 ~~vv~sasEaae~ilrvD~Iik~aPR~r~~~ 526 (527)
T KOG0363|consen 496 QAVVSSASEAAEMILRVDNIIKAAPRERERD 526 (527)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhcCCcccccC
Confidence 9999999999999999999999999987653
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-66 Score=497.90 Aligned_cols=396 Identities=21% Similarity=0.298 Sum_probs=355.7
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVA 81 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va 81 (475)
-+|+.++|..||.++||||||||+|+++||+.+.+|+++|+||+.|...|+.|.+..+++|.+++.|++ |++.|.+-|
T Consensus 82 akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~a 161 (534)
T KOG0358|consen 82 AKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSA 161 (534)
T ss_pred HHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999886 788899999
Q ss_pred HHhcc------CChhHHhHHHHHHHHhCC-C-------Ccccc--ccCCCccchheeecceEEeecccCCccccCccccc
Q 011926 82 TISAG------NDDLIGTMIADAIDKVGP-D-------GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI 145 (475)
Q Consensus 82 ~ts~~------~~~~l~~li~~a~~~~~~-~-------g~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~ 145 (475)
.||+| ++..++.+.++|+.++-. . .+|++ +.||.++|+ ++++|++|++..... ..|
T Consensus 162 tTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gp 233 (534)
T KOG0358|consen 162 TTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGP 233 (534)
T ss_pred HhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCc
Confidence 99986 578999999999998743 2 13554 689999999 999999999865432 156
Q ss_pred ceecceeEEEecccc-------------CCHHh-----------hHHHHHHHHhcCCCEEEEeccC-----ChHHHHHHH
Q 011926 146 VEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDV-----TGEALATLV 196 (475)
Q Consensus 146 ~~~~~~~Il~~~~~i-------------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l~ 196 (475)
.+++++||-++.+.| +++.| +++++++++++|+|+++++++| +|.++|||.
T Consensus 234 triekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~ 313 (534)
T KOG0358|consen 234 TRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA 313 (534)
T ss_pred chhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH
Confidence 788999999998753 33333 3578999999999999999887 688888887
Q ss_pred HhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEE----ecceEEEEeCCCCh
Q 011926 197 VNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI----RKDSTTIIADAASK 272 (475)
Q Consensus 197 ~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i----~~~~~~~~~~~~~~ 272 (475)
+-+ +++|| ++.+++.|.+|+.+|++++. +++.++++.||+++.++. ++++++-+.|+.++
T Consensus 314 klk------imvik-----dieRediefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~ 377 (534)
T KOG0358|consen 314 KLK------IMVIK-----DIEREDIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA 377 (534)
T ss_pred hCc------EEEEc-----cccHhhHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC
Confidence 644 67665 78899999999999999999 899999999999999974 45688888887653
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchh
Q 011926 273 DEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAA 351 (475)
Q Consensus 273 ~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~ 351 (475)
|..++|++||++...++|.+|++|||||++|+.++.. ++||||+.
T Consensus 378 ----------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGap 423 (534)
T KOG0358|consen 378 ----------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAP 423 (534)
T ss_pred ----------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCc
Confidence 6789999999999999999999999999999999998 99999999
Q ss_pred HHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhc----CCCceeEecCCCcccccccCc
Q 011926 352 LVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAG 427 (475)
Q Consensus 352 e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~g 427 (475)
||+++..|..++.+..|.+ .|.+++|++|||.||.+||+|||++|..++++||+ ++.++|+|++.|.+.||.+..
T Consensus 424 Eieia~~L~~~a~t~eG~~-~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~ 502 (534)
T KOG0358|consen 424 EIEIALRLSALARTLEGVE-AYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEEN 502 (534)
T ss_pred chHHHHHHHHHHhhhccch-hHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHh
Confidence 9999999999999999985 79999999999999999999999999999999998 468999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHchhHHhhc
Q 011926 428 VIDPAKVTRCALQNAASVAGMVLTTQAIVVE 458 (475)
Q Consensus 428 I~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~ 458 (475)
|+.|+.|-.++++.|+|++.+||+||+|+..
T Consensus 503 VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 503 VVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred cccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999999864
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-64 Score=495.93 Aligned_cols=396 Identities=21% Similarity=0.301 Sum_probs=359.6
Q ss_pred HHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHH
Q 011926 6 CGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATI 83 (475)
Q Consensus 6 ~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~t 83 (475)
.+.++|.+||++||||||||++|++|+|.++..++++|+||+.++++|.+|++.++..++++++|++ |...+..++.+
T Consensus 77 smiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~ 156 (527)
T KOG0364|consen 77 SMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINS 156 (527)
T ss_pred hHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999888876 66678888887
Q ss_pred hcc------CChhHHhHHHHHHHHhCCC-Cc-------cc--cccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 84 SAG------NDDLIGTMIADAIDKVGPD-GV-------LS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 84 s~~------~~~~l~~li~~a~~~~~~~-g~-------I~--v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
+.. |++..+++..+|+.+++.+ |. .+ +++||.++|| ++++|+.+.+...|| +|+..
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hp-------kmrr~ 228 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHP-------KMRRA 228 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcH-------HHHHH
Confidence 753 6788999999999999875 31 22 3699999999 899999999999998 57889
Q ss_pred ecceeEEEeccccCC------------------------HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhccccc
Q 011926 148 FENARVLVTDQKISA------------------------IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 203 (475)
Q Consensus 148 ~~~~~Il~~~~~i~~------------------------~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~ 203 (475)
++||+|+++||+|++ .+++..+++.+....+++|++.+++++.+.+||.++++
T Consensus 229 IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i--- 305 (527)
T KOG0364|consen 229 IENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI--- 305 (527)
T ss_pred hhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc---
Confidence 999999999999653 12345678888999999999999999999999999885
Q ss_pred ceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccce-eEEEEE---ecceEEEEeCCCChHHHHHHH
Q 011926 204 LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 204 ~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~~i 279 (475)
.++++.+++|..|++++||+++++ +++++...+.|+ |+.+++ ++++|+||..|++|+
T Consensus 306 --------T~~rr~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk------ 366 (527)
T KOG0364|consen 306 --------TAIRRLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK------ 366 (527)
T ss_pred --------hhhhhhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCc------
Confidence 557899999999999999999999 899999999995 788874 788999999999874
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
.|||++||+|..+++|.+|.+.||+.++|+.+-++ ++|||||+||.+|+.
T Consensus 367 -----------------------------aCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~ 417 (527)
T KOG0364|consen 367 -----------------------------ACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHE 417 (527)
T ss_pred -----------------------------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHH
Confidence 79999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC----CCceeEecCCCcccccccCcccccHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKV 434 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI~Dp~~v 434 (475)
|.+.+....+-+ ++-+.+++.||+.+|++|++|+|.++...++.+++. ...+|+|.++|.++||.+.++|+|..+
T Consensus 418 L~qksa~~~GVe-kwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~v 496 (527)
T KOG0364|consen 418 LRQKSALMTGVE-KWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAV 496 (527)
T ss_pred HHHHHhhccchh-ccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhh
Confidence 999887778875 799999999999999999999999999999999873 467899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhHHhhcCCC
Q 011926 435 TRCALQNAASVAGMVLTTQAIVVEKPK 461 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~iD~iI~~~p~ 461 (475)
|.+..++|++++++|||+|+|++.+.+
T Consensus 497 K~Q~~ktavesa~~LLRIddIvsg~kk 523 (527)
T KOG0364|consen 497 KLQTGKTAVESACLLLRIDDIVSGKKK 523 (527)
T ss_pred hhhhhhHHHHHHHHHHhhhceeeeeee
Confidence 999999999999999999999987654
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-62 Score=484.97 Aligned_cols=400 Identities=19% Similarity=0.244 Sum_probs=351.7
Q ss_pred HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccc----cCCCHHHHHH
Q 011926 4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR----PIEGRDDIKA 79 (475)
Q Consensus 4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~----~i~~~~~l~~ 79 (475)
-+|+++++++|++++||||+++|+|+++||++|.+||..|++|.+|++||+.|.+.+++.|+++.. +++|++ .
T Consensus 82 akllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~ 158 (537)
T KOG0362|consen 82 AKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---W 158 (537)
T ss_pred HHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---H
Confidence 368999999999999999999999999999999999999999999999999999999999998654 334554 4
Q ss_pred HHHHhc-----cCChhHHhHHHHHHHHhCCCC-----cccc--ccCCCccchheeecceEEeecccCCccccCcccccce
Q 011926 80 VATISA-----GNDDLIGTMIADAIDKVGPDG-----VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVE 147 (475)
Q Consensus 80 va~ts~-----~~~~~l~~li~~a~~~~~~~g-----~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~ 147 (475)
++++++ .+.+++++++++|+..+.+.+ +|.+ ..|++++|| .++.|++|++... +.+.+
T Consensus 159 ~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ 228 (537)
T KOG0362|consen 159 ALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKS 228 (537)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------Ccccc
Confidence 444433 358999999999999998874 3443 689999999 8999999998643 33456
Q ss_pred ecceeEEEeccc-------------cCCHHhhH-----------HHHHHHHhcCCCEEEEeccCChHHHHHHHHhccccc
Q 011926 148 FENARVLVTDQK-------------ISAIKDII-----------PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 203 (475)
Q Consensus 148 ~~~~~Il~~~~~-------------i~~~~~l~-----------~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~ 203 (475)
-+.+||.++.|| |++++++. ..++.+...|+++|++.+.+++.+|+++.+
T Consensus 229 ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnk------ 302 (537)
T KOG0362|consen 229 AKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK------ 302 (537)
T ss_pred cccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhcc------
Confidence 789999999998 67777764 346678889999999999999999999965
Q ss_pred ceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHHH
Q 011926 204 LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIA 280 (475)
Q Consensus 204 ~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i~ 280 (475)
++++++++++ +.+|.|||+..||++++ ++..+.+..+|+|++++ ++++.++.|.....
T Consensus 303 y~ImVlqi~S-----k~eLrrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~--------- 363 (537)
T KOG0362|consen 303 YKIMVLQINS-----KFDLRRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST--------- 363 (537)
T ss_pred ccEEEEEecc-----HhhHHHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC---------
Confidence 4578888754 89999999999999999 88899999999999996 56777777764321
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhh
Q 011926 281 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHV 359 (475)
Q Consensus 281 ~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L 359 (475)
.+.+.|++|||+|+..+|+.||.+.|++++++...+++ ++||+|++|++|++.|
T Consensus 364 -------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i 418 (537)
T KOG0362|consen 364 -------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQI 418 (537)
T ss_pred -------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHH
Confidence 13589999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC---CCceeEecCCC-cccccccCcccccHHHH
Q 011926 360 PAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS---EWTTGYNAMTD-KYENMLQAGVIDPAKVT 435 (475)
Q Consensus 360 ~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~---~~~~G~d~~~g-~i~d~~~~gI~Dp~~vk 435 (475)
.+++.+.+|.+ |++++.|++||+.+|++|++|+|+++.+++++|... ..+.|+|+... ...|+.+.||||-+.+|
T Consensus 419 ~~~g~~~~Gl~-q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K 497 (537)
T KOG0362|consen 419 SSRGATLPGLK-QLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVK 497 (537)
T ss_pred HHhcccCCCcc-hhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHH
Confidence 99999999997 799999999999999999999999999999999883 45679998776 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhHHhhcCCCCCCCCC
Q 011926 436 RCALQNAASVAGMVLTTQAIVVEKPKPKTPVA 467 (475)
Q Consensus 436 ~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~ 467 (475)
.++++.|+|+|+++|++|+||++||+..|+||
T Consensus 498 ~~a~k~at~aa~tvl~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 498 AQAIKLATEAALTVLTVDQIIMAKKAGGPKPP 529 (537)
T ss_pred HHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence 99999999999999999999999999777555
No 40
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-61 Score=480.34 Aligned_cols=406 Identities=20% Similarity=0.258 Sum_probs=359.4
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh-ccccCC--CHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRDDIKA 79 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~i~--~~~~l~~ 79 (475)
..+++.+.++.||+++|||||+|++++++||+.+.+|+..++||+.|+.||+.|+..+++++++ .+.|++ +++.|.+
T Consensus 74 a~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin 153 (545)
T KOG0360|consen 74 AAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILIN 153 (545)
T ss_pred HHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999987 677777 5778999
Q ss_pred HHHHhcc------CChhHHhHHHHHHHHhCC---CC---------ccccccCCCccchheeecceEEeecccCCccccCc
Q 011926 80 VATISAG------NDDLIGTMIADAIDKVGP---DG---------VLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNP 141 (475)
Q Consensus 80 va~ts~~------~~~~l~~li~~a~~~~~~---~g---------~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 141 (475)
+++|+++ ..++|++++++|+..+.- +| +|-+-.|.+..|| .+++|+.+.+...+.
T Consensus 154 ~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq------ 226 (545)
T KOG0360|consen 154 LAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ------ 226 (545)
T ss_pred HHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh------
Confidence 9999875 368999999999986532 23 1223589999999 899999999988774
Q ss_pred ccccceecceeEEEeccc-------------cCCHHhh-----------HHHHHHHHhcCCCEEEEeccCChHHHHHHHH
Q 011926 142 EKLIVEFENARVLVTDQK-------------ISAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVV 197 (475)
Q Consensus 142 ~~~~~~~~~~~Il~~~~~-------------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~ 197 (475)
.|+..++|+||+++|+. +.+++++ ...++++.+.|+|+|+++++|||..+.||++
T Consensus 227 -~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~ve 305 (545)
T KOG0360|consen 227 -MMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVE 305 (545)
T ss_pred -ccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHH
Confidence 58889999999999986 3455543 2457789999999999999999999999999
Q ss_pred hcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcc-ccCCCccccceeEEEE---EecceEEEEeCCCChH
Q 011926 198 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL-IENTSVEQLGTARKVT---IRKDSTTIIADAASKD 273 (475)
Q Consensus 198 ~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~ 273 (475)
++. .++||+++++|++|+++||++++++..++. -+.+++..+|+|+.|. +++++++++.+.+.
T Consensus 306 aga-----------mAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka-- 372 (545)
T KOG0360|consen 306 AGA-----------MAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA-- 372 (545)
T ss_pred cch-----------hhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--
Confidence 873 446799999999999999999999544332 2356788999999985 68999999987643
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhH
Q 011926 274 EIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAAL 352 (475)
Q Consensus 274 ~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e 352 (475)
.+|+|++||++++.+||.+|++|||+|+++..++++ +|||||++|
T Consensus 373 ----------------------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE 418 (545)
T KOG0360|consen 373 ----------------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVE 418 (545)
T ss_pred ----------------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHH
Confidence 279999999999999999999999999999999999 999999999
Q ss_pred HHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC------------CCceeEecCCCcc
Q 011926 353 VHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAMTDKY 420 (475)
Q Consensus 353 ~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~------------~~~~G~d~~~g~i 420 (475)
..++-+|+.++.+..+++ ++++..|++||..+|++|+.|++.|+.+++.++++. ..++|+|+.+|++
T Consensus 419 ~aLs~yle~~a~s~~srE-~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~ 497 (545)
T KOG0360|consen 419 TALSIYLENFATSVGSRE-QLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKI 497 (545)
T ss_pred HHHHHHHHhhcccCccHH-HHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEe
Confidence 999999999998888875 789999999999999999999999999999999883 3589999999999
Q ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCC
Q 011926 421 ENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKT 464 (475)
Q Consensus 421 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~ 464 (475)
.|.++.|+++|..+|...|+.|+|++.++||+|++|.-.|+.+.
T Consensus 498 ~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 498 RDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred ecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 99999999999999999999999999999999999988777544
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-59 Score=456.23 Aligned_cols=394 Identities=21% Similarity=0.316 Sum_probs=348.5
Q ss_pred HHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHh
Q 011926 5 DCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATIS 84 (475)
Q Consensus 5 ~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts 84 (475)
-++..+|..||+..||||||+|+|.++|+++|..++.+|+||..|..||+.|.+.++++|++.+.++ +++.|..+++|+
T Consensus 74 ~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-~~~~L~~va~ts 152 (520)
T KOG0359|consen 74 SLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DRETLKDVARTS 152 (520)
T ss_pred HHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-hHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999999999999999999999999777776 477899999999
Q ss_pred ccC------ChhHHhHHHHHHHHhC-CCCcc-----cc--ccCCCccchheeecceEEeecccCCccccCcccccceecc
Q 011926 85 AGN------DDLIGTMIADAIDKVG-PDGVL-----SI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFEN 150 (475)
Q Consensus 85 ~~~------~~~l~~li~~a~~~~~-~~g~I-----~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~ 150 (475)
++. -+-+++.+++|+..+. +++.| .+ .+..+..|+ .+++|++++||..||. ||++++|
T Consensus 153 l~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~ 224 (520)
T KOG0359|consen 153 LRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVED 224 (520)
T ss_pred hcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhc
Confidence 864 3567778888887776 33322 11 255778888 8999999999999984 8899999
Q ss_pred eeEEEeccccCCH-------------Hh-----------hHHHHHHHHhcCC----CEEEEeccCChHHHHHHHHhcccc
Q 011926 151 ARVLVTDQKISAI-------------KD-----------IIPLLEKTTQLRA----PLLIIAEDVTGEALATLVVNKLRG 202 (475)
Q Consensus 151 ~~Il~~~~~i~~~-------------~~-----------l~~~le~i~~~~~----~lvi~~~~i~~~al~~l~~~~~~g 202 (475)
++||++|.++++. +| +.+.+.++++.+. -+||.+++|||..|+.|++++|
T Consensus 225 a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI-- 302 (520)
T KOG0359|consen 225 AYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI-- 302 (520)
T ss_pred eEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch--
Confidence 9999999986542 22 1234555555442 4668899999999999999874
Q ss_pred cceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEE---EecceEEEEeCCCChHHHHHHH
Q 011926 203 ILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARI 279 (475)
Q Consensus 203 ~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~i 279 (475)
.++|+.++.+||||..+|||..++ +++|+++++||+|+.++ +++++|||+++|++|
T Consensus 303 ---------laLRRAKRRNmERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p------- 361 (520)
T KOG0359|consen 303 ---------LALRRAKRRNMERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP------- 361 (520)
T ss_pred ---------HHHHHHhhhhHHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC-------
Confidence 457899999999999999999999 89999999999999998 479999999999987
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHh
Q 011926 280 AQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDH 358 (475)
Q Consensus 280 ~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~ 358 (475)
++|||+++||+++.+.++++.++|++++++++++++ ++||+|++|..++.+
T Consensus 362 ----------------------------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~ 413 (520)
T KOG0359|consen 362 ----------------------------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRH 413 (520)
T ss_pred ----------------------------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHH
Confidence 489999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhhcC--CCceeEecCCCcccccccCcccccHHHHH
Q 011926 359 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS--EWTTGYNAMTDKYENMLQAGVIDPAKVTR 436 (475)
Q Consensus 359 L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~--~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~ 436 (475)
|+....+.+++. ++++++|++||..+|++|++|+|+|+.+++.+|... ....|+|+.+|+-.+....||||.+.||.
T Consensus 414 lr~~k~~vkgra-~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~ 492 (520)
T KOG0359|consen 414 LRESKKSVKGRA-YLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKK 492 (520)
T ss_pred HHHhhhccCchh-hhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHH
Confidence 998888888986 899999999999999999999999999999988763 23569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhHHhhcC
Q 011926 437 CALQNAASVAGMVLTTQAIVVEK 459 (475)
Q Consensus 437 ~~l~~A~e~a~~lL~iD~iI~~~ 459 (475)
+.|.+++-.|+.||-+|+|+.+.
T Consensus 493 ~~l~s~~via~nlLlvDEi~rAG 515 (520)
T KOG0359|consen 493 QLLRSEAVIATNLLLVDEIIRAG 515 (520)
T ss_pred HHhhhhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999764
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-54 Score=411.99 Aligned_cols=312 Identities=22% Similarity=0.276 Sum_probs=292.5
Q ss_pred HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926 3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT 82 (475)
Q Consensus 3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ 82 (475)
+.+++...+..||.++|||||.+++|++.+++++.+++..|+||..|..||..+...++++|.+.+.+++
T Consensus 74 IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------- 143 (400)
T KOG0357|consen 74 IAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------- 143 (400)
T ss_pred HHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------
Confidence 5688999999999999999999999999999999999999999999999999999999999998776654
Q ss_pred HhccCChhHHhHHHHHHHHhCCCCccccccCCCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926 83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA 162 (475)
Q Consensus 83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~ 162 (475)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI 242 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~ 242 (475)
+..+++.++++|.++++|+|++||+|-++|.+|++ |..||+.--++|-||.+|||++++ ++
T Consensus 144 ---f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp-----rF 204 (400)
T KOG0357|consen 144 ---FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP-----RF 204 (400)
T ss_pred ---HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec-----cH
Confidence 33467888899999999999999999999999985 788899999999999999999999 89
Q ss_pred cCCCccccceeEEEEE-----ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCC
Q 011926 243 ENTSVEQLGTARKVTI-----RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAA 317 (475)
Q Consensus 243 ~~~~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~ 317 (475)
++++++.||+|+.|+. ++|++..++.|+++ +.+||.+||.
T Consensus 205 ~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~ 249 (400)
T KOG0357|consen 205 SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGG 249 (400)
T ss_pred hhhCHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecC
Confidence 9999999999999973 48899999999985 4799999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 011926 318 TETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVE 396 (475)
Q Consensus 318 t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d 396 (475)
+..+++|.+|++|||||++||.++|. +|+|||++|+.||-.+.+.+.++++.+ ||++++|++||++||..|++|+|++
T Consensus 250 Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~e-qya~rafa~ale~ipmalaensgl~ 328 (400)
T KOG0357|consen 250 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIE-QYAFRAFADALESIPMALAENSGLD 328 (400)
T ss_pred cceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHH-HHHHHHHHHHHhhcchhhhhccCCC
Confidence 99999999999999999999999999 999999999999999999999999986 8999999999999999999999999
Q ss_pred hhhHHHhhhc-----CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcC
Q 011926 397 GEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 459 (475)
Q Consensus 397 ~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~ 459 (475)
|.+.++++++ ..+++|+|+.-..--||++.+|+|++.-|++.+..|++++.|+|+||+++...
T Consensus 329 pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 329 PIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred chhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 9999999987 37899999988888999999999999999999999999999999999998654
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.97 E-value=7.1e-30 Score=242.29 Aligned_cols=192 Identities=34% Similarity=0.475 Sum_probs=170.2
Q ss_pred HHHHHHHHHhcc-----CChhHHhHHHHHHHHhCCC------Ccccc--ccCCCccchheeecceEEeecccCCccccCc
Q 011926 75 DDIKAVATISAG-----NDDLIGTMIADAIDKVGPD------GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNP 141 (475)
Q Consensus 75 ~~l~~va~ts~~-----~~~~l~~li~~a~~~~~~~------g~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 141 (475)
+.|.++|+|+++ |++.+++++++|+..++++ ++|++ .+||++.|| ++++|++|++++.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468899999998 8999999999999999872 45544 689999999 8999999999999985
Q ss_pred ccccceecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHH
Q 011926 142 EKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKAL 221 (475)
Q Consensus 142 ~~~~~~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~ 221 (475)
|+++++||+|++++++|+. +|+++++|++.++++|.+++ +++|+ ++++++
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~-----~~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVR-----RVKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEE-----eCCHHH
Confidence 5788999999999999886 88999999999999999876 45544 578999
Q ss_pred HHHHHHHhCCeEeccccCccccCCCccccceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHH
Q 011926 222 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 298 (475)
Q Consensus 222 l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l 298 (475)
|+|||++|||++++ ++++++++.||+|+++++. ++++++|.+++.+
T Consensus 126 l~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999999 7888999999999999864 5578899887642
Q ss_pred HHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhc
Q 011926 299 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEE 342 (475)
Q Consensus 299 ~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~ 342 (475)
..|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 175 ---------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 ---------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ---------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.97 E-value=1.7e-29 Score=246.82 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=169.9
Q ss_pred CChhHHhHHHHHHHHhCCC---C-------cccc--ccCCCccchheeecceEEeecccCCccccCcccccceecceeEE
Q 011926 87 NDDLIGTMIADAIDKVGPD---G-------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 154 (475)
Q Consensus 87 ~~~~l~~li~~a~~~~~~~---g-------~I~v--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 154 (475)
|.+.|++++++|+..+.++ + +|++ .+||++.|| ++++|+++++++.++ +||++++||||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 5789999999999988532 1 2443 689999999 999999999998775 588999999999
Q ss_pred EeccccCCH------Hh-----------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccc
Q 011926 155 VTDQKISAI------KD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 217 (475)
Q Consensus 155 ~~~~~i~~~------~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~ 217 (475)
+++++|+.. ++ +.++++++++.|+++||++++|++.++++|.++++ ++ ++++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI------~~-----v~~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGI------TL-----VLNV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCC------EE-----EEec
Confidence 999997542 11 34678899999999999999999999999999873 33 5688
Q ss_pred hHHHHHHHHHHhCCeEeccccCcc-ccCCCccccceeEEEEE---ec-----ceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 011926 218 RKALLQDIAIVTGAEFQAGDLGLL-IENTSVEQLGTARKVTI---RK-----DSTTIIADAASKDEIQARIAQLKKELAE 288 (475)
Q Consensus 218 ~~~~l~~la~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~v~i---~~-----~~~~~~~~~~~~~~i~~~i~~l~~~l~~ 288 (475)
++++|+|||++|||++++ + .++++++.||+|+.|++ ++ +++++|++|+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 999999999999999999 6 45788899999999985 33 589999998754
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 011926 289 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG 343 (475)
Q Consensus 289 ~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g 343 (475)
..|||+|||+|++.++|.+|+++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 479999999999999999999999999999998876
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.47 E-value=2.7e-13 Score=151.72 Aligned_cols=208 Identities=17% Similarity=0.283 Sum_probs=167.2
Q ss_pred CChhHHhHHHHHHHHhCCC----------Cc--cccccCCCccchheeecceEEeecccCCccccCcccccceecceeEE
Q 011926 87 NDDLIGTMIADAIDKVGPD----------GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 154 (475)
Q Consensus 87 ~~~~l~~li~~a~~~~~~~----------g~--I~v~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 154 (475)
|.+-+..++.+|.+.+.++ ++ ++.+.+|+..|| +++.|+++.+...+ +.|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceE
Confidence 4566788889999988775 12 344789999999 99999999998776 4688899999999
Q ss_pred EeccccCC---------HHh--------hHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccc
Q 011926 155 VTDQKISA---------IKD--------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 217 (475)
Q Consensus 155 ~~~~~i~~---------~~~--------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~ 217 (475)
++.++|.+ .+. +...+.++...+++++++.++|++.|.++|....+ .- ++ ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I---~l--vl------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGI---SL--VL------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCe---EE--EE------ec
Confidence 99998543 222 34567778888999999999999999999976553 21 11 67
Q ss_pred hHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEEe--------cceEEEEeCCCChHHHHHHHHHHHHHHhhc
Q 011926 218 RKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR--------KDSTTIIADAASKDEIQARIAQLKKELAET 289 (475)
Q Consensus 218 ~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~--------~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~ 289 (475)
++..|+||+++||+.|++ +++.++...||+|..+++. ...++||+||+.+.
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l---------------- 532 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL---------------- 532 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC----------------
Confidence 889999999999999999 8899999999999999852 34677999997752
Q ss_pred cchhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHH-HhcCCcCCcchhHH
Q 011926 290 DSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAA-IEEGIVPGGGAALV 353 (475)
Q Consensus 290 ~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~-~~~gvvpGGGa~e~ 353 (475)
.|||++||++..++.+.++-+.-++-++-+. ++.-++.--|+...
T Consensus 533 -------------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 -------------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -------------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 5999999999999999999999999777754 44447766666543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.0071 Score=65.08 Aligned_cols=95 Identities=53% Similarity=0.701 Sum_probs=79.7
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccc
Q 011926 170 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 249 (475)
Q Consensus 170 le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~ 249 (475)
++...+.+.+++++.++..++++..++.|.+++..++++|+.++|++.++..|++++++|+.++.+++.+ .....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence 3444556678888889999899999999999999999999999999999999999999999999985321 15678
Q ss_pred cceeEEEEEecceEEEEeCC
Q 011926 250 LGTARKVTIRKDSTTIIADA 269 (475)
Q Consensus 250 lG~~~~v~i~~~~~~~~~~~ 269 (475)
+|.|..+...++.+....|.
T Consensus 312 ~~ga~~v~~~~d~t~~~~G~ 331 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLGE 331 (524)
T ss_pred ccCceEEeecccCceeecCc
Confidence 89999999887777766653
No 47
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase,. This group consists of archealpseudouridine synthases.Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. This group of proteins make Psedouridine in tRNAs.
Probab=42.28 E-value=26 Score=33.38 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHc---hhHHhhcCCCCCCCCCCCCCCCC
Q 011926 435 TRCALQNAASVAGMVLT---TQAIVVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 435 k~~~l~~A~e~a~~lL~---iD~iI~~~p~~~~~~~~~~~~~~ 474 (475)
.+.++-..+++..--+. ++.++..+.+...+++|||+||+
T Consensus 173 VR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~APa~GL~ 215 (221)
T cd02866 173 VRRIVGALSLVGKGKRENEWVDKLLDGEFRKKDGVPAPPEGLI 215 (221)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhCCCcccCCCCCCCCCcE
Confidence 34444444444444444 45556665565678899999996
No 48
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=32.77 E-value=1.1e+02 Score=30.03 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCC
Q 011926 169 LLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGA 231 (475)
Q Consensus 169 ~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~ 231 (475)
=+|.+...+++|||.....++.....|.+.+ +.+..+......++ .+.++.++.++|-
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~g----i~v~~~~~~~~~~~-~~~i~~lg~~~G~ 140 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLG----VEATFLNLTSVDGM-KKSITELGEKYGR 140 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcC----CcEEEEcCCCHHHH-HHHHHHHHHHhCC
Confidence 3788889999999988778777777776654 34444433222233 4567788888774
No 49
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=32.50 E-value=61 Score=31.00 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHchh---HHhhcCCCCCCCCCCCCCCCC
Q 011926 434 VTRCALQNAASVAGMVLTTQ---AIVVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 434 vk~~~l~~A~e~a~~lL~iD---~iI~~~p~~~~~~~~~~~~~~ 474 (475)
..+..+-.++++..--+..| .++..+.+...+++|||+||.
T Consensus 183 mVR~mvg~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 226 (227)
T TIGR00071 183 MVRKIVGALVLVGRGKLPPEWVAKLLDAKKRNLAPTTAPANGLY 226 (227)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCCCCCCCc
Confidence 34444555555555445544 445554555568899999996
No 50
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=31.16 E-value=40 Score=27.74 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHHHHHcCCChhhHHHhhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHH
Q 011926 387 SLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGM 448 (475)
Q Consensus 387 ~~L~~NaG~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~ 448 (475)
..|..|.++..-.++.+|.. ++||| +++.++...||||.....++...++.-++.
T Consensus 32 ~~L~~s~~frNP~i~ekLi~---~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Qk 86 (96)
T PF07818_consen 32 DRLQNSKSFRNPSILEKLIE---FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQK 86 (96)
T ss_pred HHHHHccccCChHHHHHHHH---HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHHH
Confidence 44667777777777888764 56777 477788899999999999988887665543
No 51
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=29.22 E-value=33 Score=36.28 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhhhcc
Q 011926 326 KLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDK 365 (475)
Q Consensus 326 ~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~~~~ 365 (475)
+|.+.+|+.++|++ +.+ +|.|||+-+-.+...|..++++
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 56678899999977 556 9999999999999889888663
No 52
>smart00574 POX domain associated with HOX domains.
Probab=29.14 E-value=1.5e+02 Score=26.17 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHHHhcCCeEEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC-CcCCcchhHHHHhHhhhhh
Q 011926 291 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAI 362 (475)
Q Consensus 291 ~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g-vvpGGGa~e~~ls~~L~~~ 362 (475)
+..||..+..+.++|- ..++|++++++.-..=++.++..= .|+|+|++-.+.+-+|+..
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4456666666666664 357788888777777666665553 7899999888876666543
No 53
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=29.07 E-value=3.8e+02 Score=26.43 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=28.9
Q ss_pred EEEeccccCCHHhhHHHHHHHHhcC-CCEEEEeccC
Q 011926 153 VLVTDQKISAIKDIIPLLEKTTQLR-APLLIIAEDV 187 (475)
Q Consensus 153 Il~~~~~i~~~~~l~~~le~i~~~~-~~lvi~~~~i 187 (475)
||+..+.-.++++|+..-|++...| .++|+|..+|
T Consensus 155 vLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGI 190 (286)
T COG2876 155 VLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGI 190 (286)
T ss_pred eEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 4555555688999999999999876 7999999888
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.96 E-value=1.6e+02 Score=26.40 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=33.5
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCC-cccchHHHHHHHHHHhC
Q 011926 170 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPG-FGERRKALLQDIAIVTG 230 (475)
Q Consensus 170 le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~-~~~~~~~~l~~la~~tG 230 (475)
+|.+.+.+++|||............|.+.+ ..+..+.... +.+. .+.++.++.++|
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~g----i~v~~~~~~~~~~~~-~~~~~~lg~~~g 109 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAG----IPVVVLPAASSLDEI-YDQIELIGKITG 109 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcC----CcEEEeCCCCCHHHH-HHHHHHHHHHhC
Confidence 778888899999886655554556666544 2344443222 2222 345667777776
No 55
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.61 E-value=3e+02 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHhcc
Q 011926 168 PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL 200 (475)
Q Consensus 168 ~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~ 200 (475)
...+.+.+.|+++||+. .+.+.+.+.|...++
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GI 87 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGI 87 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCc
Confidence 35788889999999955 899999999988763
No 56
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=25.53 E-value=57 Score=17.28 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCC
Q 011926 460 PKPKTPVAAPPQ 471 (475)
Q Consensus 460 p~~~~~~~~~~~ 471 (475)
|...+|.++|||
T Consensus 4 pqG~pPQ~~Pp~ 15 (15)
T PF02162_consen 4 PQGYPPQGYPPQ 15 (15)
T ss_pred CcCCCCCCCCCC
Confidence 444556666665
No 57
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=25.17 E-value=1.4e+02 Score=29.30 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=45.6
Q ss_pred EEEEecCCChhHHHHHHHHHHHHHHHHHHHHhcC---CcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHH
Q 011926 310 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEG---IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPA 386 (475)
Q Consensus 310 ~TI~lrG~t~~~l~E~~r~~~dal~~~~~~~~~g---vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip 386 (475)
.|+-|++. ---|+++||+++++..++.- ++.|-|++.+.-+--+.. +.+...+ +-....
T Consensus 95 ~tM~VGAV------a~lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~~--e~Lst~e----------s~~~~s 156 (349)
T KOG1593|consen 95 DTMEVGAV------ADLRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFKE--EDLSTEE----------SKSWWS 156 (349)
T ss_pred Cceeehhh------hhHHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCCc--cccCCHH----------HHHHHH
Confidence 46666654 23689999999999999874 999999999887766654 2333332 223344
Q ss_pred HHHHHHc
Q 011926 387 SLIAHNA 393 (475)
Q Consensus 387 ~~L~~Na 393 (475)
.+.++|+
T Consensus 157 ~W~~~nC 163 (349)
T KOG1593|consen 157 DWKAENC 163 (349)
T ss_pred HHHHhcC
Confidence 6777776
No 58
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.48 E-value=1.3e+02 Score=26.41 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcc
Q 011926 167 IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL 241 (475)
Q Consensus 167 ~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~ 241 (475)
...++.+.+.|.|+|+ +-++.+. .+..+.|+.++||.+..+..+++
T Consensus 66 ~evi~~I~~~G~PviV-AtDV~p~----------------------------P~~V~Kia~~f~A~ly~P~~dls 111 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIV-ATDVSPP----------------------------PETVKKIARSFNAVLYTPERDLS 111 (138)
T ss_pred HHHHHHHHHcCCEEEE-EecCCCC----------------------------cHHHHHHHHHhCCcccCCCCcCC
Confidence 4578888899999887 4455441 35678999999999988654443
No 59
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.42 E-value=2.7e+02 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHhcCCCEEEEeccCChH-HHHHHHHhc
Q 011926 170 LEKTTQLRAPLLIIAEDVTGE-ALATLVVNK 199 (475)
Q Consensus 170 le~i~~~~~~lvi~~~~i~~~-al~~l~~~~ 199 (475)
+|.+...+++|||......+. ....|.+.+
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~g 92 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLG 92 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcC
Confidence 678888999999886655553 666676554
No 60
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=23.34 E-value=91 Score=29.96 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHchhHH---hhcCCCCCCCCCCCCCCCC
Q 011926 433 KVTRCALQNAASVAGMVLTTQAI---VVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 433 ~vk~~~l~~A~e~a~~lL~iD~i---I~~~p~~~~~~~~~~~~~~ 474 (475)
...+.++-.++++..--+..|.+ +..+.+....++|||+||.
T Consensus 189 ~qVR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~APa~GL~ 233 (239)
T cd02570 189 HMVRNIVGTLLEVGRGKLSPEDIKEILEAKDRTAAGPTAPAHGLY 233 (239)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCcCCCCCE
Confidence 34455555666666655555544 4444444458899999995
No 61
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.72 E-value=80 Score=34.22 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=37.3
Q ss_pred CccchHHHHHH------HHHHHHHH-hhhcC-CChhhHHHHHHHHHHHHHHHHHh
Q 011926 20 DGTTTASVLAR------EIIKLGLL-SVTSG-ANPVSLKRGIDKTVHGLVEELEK 66 (475)
Q Consensus 20 DGTTt~vvLa~------~Ll~~~~~-li~~g-i~p~~I~~g~~~a~~~~~~~L~~ 66 (475)
|-|.-+|+|.| ++-+.+++ |+.+| +||..|=+-+..+.+.+-+.+.+
T Consensus 241 ddtp~~v~ls~fdp~rreia~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 241 DDTPEAVILSGFDPVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIRE 295 (514)
T ss_pred cCCCCeEEecCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777877 77777765 67787 99999999999998887777655
No 62
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=22.71 E-value=60 Score=31.44 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=15.1
Q ss_pred hHHhhcCCCCCCCCCCCCCCCC
Q 011926 453 QAIVVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 453 D~iI~~~p~~~~~~~~~~~~~~ 474 (475)
.+++..+.+....++|||+||.
T Consensus 218 ~~~L~~~~r~~~~~~APa~GL~ 239 (245)
T PRK12434 218 KQILEAKDRNQANCTAPASGLY 239 (245)
T ss_pred HHHHhcCCcccCCCccCCCCCE
Confidence 3445455555567899999985
No 63
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=22.39 E-value=89 Score=30.20 Aligned_cols=42 Identities=21% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHchhHH---hhcCCCCCCCCCCCCCCCC
Q 011926 432 AKVTRCALQNAASVAGMVLTTQAI---VVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 432 ~~vk~~~l~~A~e~a~~lL~iD~i---I~~~p~~~~~~~~~~~~~~ 474 (475)
+...+.++-..+++..--+..+.+ +. .+.....|+|||+||+
T Consensus 195 ~~mVR~mvg~l~~vg~g~~~~~~i~~~L~-~~~~~~~~~APa~GL~ 239 (245)
T cd02568 195 LHQIRKMIGLAIAIVRGGAPESLIDLSFN-KAKRIIIPLAPGLGLL 239 (245)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHhc-ccccccccCCCCccee
Confidence 344555556666666555554433 43 3333456899999996
No 64
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like. This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya.
Probab=22.17 E-value=97 Score=30.25 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHchhH---HhhcCCCCCCCC--CCCCCCCC
Q 011926 433 KVTRCALQNAASVAGMVLTTQA---IVVEKPKPKTPV--AAPPQGLM 474 (475)
Q Consensus 433 ~vk~~~l~~A~e~a~~lL~iD~---iI~~~p~~~~~~--~~~~~~~~ 474 (475)
...+.++-..+++..-.+..++ ++..+.+...++ +|||+||+
T Consensus 204 ~mVR~mvg~ll~vg~G~~~~~~i~~~L~~~~r~~~~~~~~Ap~~GL~ 250 (256)
T cd02569 204 HQVRCMMAVLFLIGQGLEPPSVISQLLDVEKNPRKPQYTMASEVPLV 250 (256)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHhCccccCCCCcCcCCCCCcE
Confidence 4455555555666555555544 454544444444 89999996
No 65
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.60 E-value=2.7e+02 Score=26.91 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEec
Q 011926 163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQA 235 (475)
Q Consensus 163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~ 235 (475)
.+++..+.+...+. .+.+++..+|..++.+|.+.+ +-++|+++..-.....|+.+|. ||-+++-
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~~------~~~~KIaS~dl~n~~lL~~~A~-tgkPvIl 118 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTPFDEESVDFLEELG------VPAYKIASGDLTNLPLLEYIAK-TGKPVIL 118 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHHT-------SEEEE-GGGTT-HHHHHHHHT-T-S-EEE
T ss_pred HHHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHcC------CCEEEeccccccCHHHHHHHHH-hCCcEEE
Confidence 44556666666664 567777888999999997655 5677877776666777888887 8888775
No 66
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=21.52 E-value=1e+02 Score=30.37 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHchhHH---hhcCCCCCCCCCCCCCCCC
Q 011926 433 KVTRCALQNAASVAGMVLTTQAI---VVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 433 ~vk~~~l~~A~e~a~~lL~iD~i---I~~~p~~~~~~~~~~~~~~ 474 (475)
...+..+-..+++..--+..|++ +..+.+....++|||+||.
T Consensus 197 ~mVR~mVg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 241 (272)
T PRK14588 197 HMVRNIVGTLLLVGRGRMTVDQFGAVLASRDRRLAGPTAPAHGLY 241 (272)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCCCCCCcE
Confidence 34444555555555444555554 5555555678899999985
No 67
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=20.95 E-value=70 Score=31.00 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHchhH---HhhcCCCCCCCCCCCCCCCC
Q 011926 434 VTRCALQNAASVAGMVLTTQA---IVVEKPKPKTPVAAPPQGLM 474 (475)
Q Consensus 434 vk~~~l~~A~e~a~~lL~iD~---iI~~~p~~~~~~~~~~~~~~ 474 (475)
..+..+-..+++..--+..|+ ++..+.+...+++|||+||.
T Consensus 196 mVR~mvg~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 239 (245)
T PRK14586 196 MVRNIVGALVKVGLGQWEPEKIKEVLEARDRSKAAGTAPAHGLY 239 (245)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcCCcccCCCccCCCCCE
Confidence 344444444555443344444 45455555568899999995
No 68
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=20.20 E-value=2.4e+02 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhCCeEec
Q 011926 218 RKALLQDIAIVTGAEFQA 235 (475)
Q Consensus 218 ~~~~l~~la~~tG~~ii~ 235 (475)
....|++||..+||..+.
T Consensus 141 ~~~~l~~ia~~~gG~~~~ 158 (171)
T cd01461 141 NTYLLERLAREGRGIARR 158 (171)
T ss_pred CHHHHHHHHHcCCCeEEE
Confidence 457789999999988775
Done!