Citrus Sinensis ID: 011929
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS28 | 494 | Transcription factor GTE1 | yes | no | 0.690 | 0.663 | 0.364 | 1e-55 | |
| Q9LK27 | 813 | Transcription factor GTE8 | no | no | 0.722 | 0.421 | 0.308 | 4e-40 | |
| Q93YS6 | 688 | Transcription factor GTE9 | no | no | 0.214 | 0.148 | 0.605 | 4e-33 | |
| Q93ZB7 | 620 | Transcription factor GTE1 | no | no | 0.214 | 0.164 | 0.567 | 4e-30 | |
| Q9FGW9 | 1061 | Transcription factor GTE1 | no | no | 0.193 | 0.086 | 0.523 | 8e-29 | |
| Q9S7T1 | 461 | Transcription factor GTE3 | no | no | 0.229 | 0.236 | 0.526 | 5e-28 | |
| Q9LNC4 | 766 | Transcription factor GTE4 | no | no | 0.271 | 0.168 | 0.433 | 6e-26 | |
| Q8H1D7 | 487 | Transcription factor GTE5 | no | no | 0.229 | 0.223 | 0.464 | 1e-24 | |
| Q7Y214 | 590 | Transcription factor GTE7 | no | no | 0.227 | 0.183 | 0.495 | 1e-22 | |
| Q9Y7N0 | 578 | SWR1 complex bromodomain | yes | no | 0.204 | 0.167 | 0.44 | 1e-20 |
| >sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 | Back alignment and function desciption |
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Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 59/387 (15%)
Query: 95 GPKD-------KRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISK 147
GPK+ K+ ++D + QC +L+ LM H GW+F PVDPVK++IPDYF++I K
Sbjct: 50 GPKELDEVQPKKKQRLDCDWSSQCLALLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQK 109
Query: 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKS 207
PMDLGTVK++L +N+YS +DEF ADVRLTF+NAM YNP N VH +A+E+N +F+++W+S
Sbjct: 110 PMDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVRWES 169
Query: 208 LEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEEKAARSSYC 267
L +K K+L + N+ R+ K P+ S + S + +
Sbjct: 170 LMKK-----------KVLR---LSWNEVREGY-KRQPVERDCSRRSSTGTSASSG----- 209
Query: 268 ARAVEVERAKPAQNLSSKLVIKNLHKGTNDGGRLACNIVNAKPPLSPVACKSCGKCGSAT 327
V KPA+ +N KG+ + P ++P A +C KCG
Sbjct: 210 -----VGLTKPAK--------ENSEKGSLSSKPVKVQSKKNTPAVTPKALATC-KCGRII 255
Query: 328 CGCNLPSDSTHASSDITSERSLGGDRACSTDASKPDCQVKSTSTSQMSKSDPDSDGAVSA 387
C C + S S G D CS DCQ+K+ S +Q S+ DP S+G+ ++
Sbjct: 256 CIC------------LKSCSSFGSD-VCSL----TDCQLKNISGAQASELDPQSNGSDTS 298
Query: 388 LDDGNLCPSSQLTPPATDSASAEEWTTPLLDV-QMSPKKALRAAMLKSRFADTILKAQQR 446
+ N SQL P+ E T + + P+KALRAA+LK+++A TI+KA+ R
Sbjct: 299 KKERNGSLKSQLDKPSNSDLLGNELKTAFPALPPVPPEKALRAAILKAQYAGTIIKAKHR 358
Query: 447 TLLDHGDKADPVKLQQEKERLEQRQRE 473
+L +KAD +++Q EKE++E+ QRE
Sbjct: 359 IVLGQNNKADLIRIQIEKEQMERAQRE 385
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y7N0|BDF1_SCHPO SWR1 complex bromodomain subunit bdf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdf1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 255557483 | 570 | bromodomain-containing protein, putative | 0.941 | 0.784 | 0.552 | 1e-135 | |
| 224061031 | 564 | global transcription factor group [Popul | 0.924 | 0.778 | 0.529 | 1e-124 | |
| 224116480 | 567 | global transcription factor group [Popul | 0.903 | 0.756 | 0.546 | 1e-123 | |
| 255580043 | 536 | bromodomain-containing protein, putative | 0.898 | 0.796 | 0.509 | 1e-114 | |
| 359483574 | 588 | PREDICTED: transcription factor GTE9-lik | 0.875 | 0.707 | 0.452 | 1e-111 | |
| 147826573 | 588 | hypothetical protein VITISV_007433 [Viti | 0.875 | 0.707 | 0.452 | 1e-110 | |
| 297740594 | 573 | unnamed protein product [Vitis vinifera] | 0.774 | 0.642 | 0.503 | 1e-107 | |
| 356557783 | 565 | PREDICTED: transcription factor GTE8-lik | 0.907 | 0.762 | 0.472 | 1e-103 | |
| 356549150 | 566 | PREDICTED: transcription factor GTE8-lik | 0.92 | 0.772 | 0.470 | 1e-102 | |
| 255565481 | 532 | bromodomain-containing protein, putative | 0.882 | 0.787 | 0.490 | 3e-97 |
| >gi|255557483|ref|XP_002519772.1| bromodomain-containing protein, putative [Ricinus communis] gi|223541189|gb|EEF42745.1| bromodomain-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 262/474 (55%), Positives = 327/474 (68%), Gaps = 27/474 (5%)
Query: 1 MIATEAVITKKKLKIKFGSQRIEAVPGSQPCEYGQQQSHVENWRHSSSVAESNQLMMSKP 60
MI+TE V+ KK LKIKF S +I+ + C+ + +VE HS
Sbjct: 1 MISTEPVVAKK-LKIKFSSHKIDTISVKNACDMAR---NVEKNYHS-------------- 42
Query: 61 YRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMM 120
++ E+ K++ + KR +++EG + K+ KMDRGV HQC+ ++KSLM
Sbjct: 43 -------QVCDIENMKQKLTECSAIKRGPSDMVEGQQQKKRKMDRGVIHQCTSLVKSLMN 95
Query: 121 HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180
HP GWVF PVDP KL+IPDYFS+I+ PMDLGTVK++L+ N Y ++EF ADVRLTFSNA
Sbjct: 96 HPCGWVFKEPVDPEKLEIPDYFSVITNPMDLGTVKSKLENNQYFGAEEFAADVRLTFSNA 155
Query: 181 MLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCP 240
+LYNPP N VHKMA++L +F+ +WK+LEEKW+ ++ K G GK + + EV DTRQ CP
Sbjct: 156 LLYNPPLNYVHKMAEKLKKIFETRWKALEEKWNYQIAKDGDGKPFNARPKEVGDTRQKCP 215
Query: 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAKPAQNLSSKLVIKNLHKGTNDGGR 300
+TPPLH K+SK SE K R S RA EV+ +KPA+N +S+ + +N +KGT++GGR
Sbjct: 216 QTPPLHKAELPKRSKPSEVKLLRGSSNVRAAEVKLSKPAENCNSEELRQNSYKGTDNGGR 275
Query: 301 LACNIVNAKPPLSPVACKSCGKCGSATCGCNLPSDSTHASSDITSERSLGGD-RACSTDA 359
AC VN KP V K CG CG + C C LPSDS ASSDI+SE+S G D ACSTD
Sbjct: 276 NACGSVNVKPSSVSVVSK-CGTCGRSACQCILPSDSAQASSDISSEKSWGKDHHACSTDT 334
Query: 360 SKPDCQVKSTSTSQMSKSDPDSDGAVSALDDGNLCPSSQLTPPATDSASAEEWTTPLLDV 419
SK D Q K S QMSKSDPDSDGAVSALD+ N+CPSSQL PATD+ S E W P+ DV
Sbjct: 335 SKMDVQGKCMSMLQMSKSDPDSDGAVSALDEENICPSSQLMTPATDANSVEGWRPPIFDV 394
Query: 420 QMSPKKALRAAMLKSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQRE 473
Q+SP KALRAAMLK RFADTILKAQ +TLLDHGDKADPVKLQ+EKERLE+RQ E
Sbjct: 395 QLSPTKALRAAMLKRRFADTILKAQHKTLLDHGDKADPVKLQEEKERLEKRQLE 448
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061031|ref|XP_002300324.1| global transcription factor group [Populus trichocarpa] gi|222847582|gb|EEE85129.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224116480|ref|XP_002317311.1| global transcription factor group [Populus trichocarpa] gi|222860376|gb|EEE97923.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255580043|ref|XP_002530855.1| bromodomain-containing protein, putative [Ricinus communis] gi|223529579|gb|EEF31529.1| bromodomain-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359483574|ref|XP_002269681.2| PREDICTED: transcription factor GTE9-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147826573|emb|CAN72911.1| hypothetical protein VITISV_007433 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297740594|emb|CBI30776.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356557783|ref|XP_003547190.1| PREDICTED: transcription factor GTE8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549150|ref|XP_003542960.1| PREDICTED: transcription factor GTE8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255565481|ref|XP_002523731.1| bromodomain-containing protein, putative [Ricinus communis] gi|223537035|gb|EEF38671.1| bromodomain-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2142305 | 494 | AT5G46550 "AT5G46550" [Arabido | 0.28 | 0.269 | 0.517 | 4.7e-50 | |
| TAIR|locus:2086498 | 813 | GTE8 "AT3G27260" [Arabidopsis | 0.273 | 0.159 | 0.474 | 7.1e-36 | |
| TAIR|locus:2082289 | 620 | BET10 "AT3G01770" [Arabidopsis | 0.218 | 0.167 | 0.567 | 6.9e-34 | |
| TAIR|locus:2158564 | 1061 | NPX1 "nuclear protein X1" [Ara | 0.221 | 0.098 | 0.523 | 1.8e-33 | |
| TAIR|locus:2032692 | 461 | GTE3 "AT1G73150" [Arabidopsis | 0.242 | 0.249 | 0.508 | 1.5e-26 | |
| TAIR|locus:2038565 | 766 | GTE4 "AT1G06230" [Arabidopsis | 0.347 | 0.215 | 0.393 | 2.4e-22 | |
| TAIR|locus:2030958 | 487 | AT1G17790 "AT1G17790" [Arabido | 0.252 | 0.246 | 0.439 | 3.5e-22 | |
| TAIR|locus:2155715 | 590 | GTE7 "AT5G65630" [Arabidopsis | 0.324 | 0.261 | 0.393 | 6e-21 | |
| UNIPROTKB|C9J1F7 | 155 | BRDT "Bromodomain testis-speci | 0.237 | 0.729 | 0.398 | 1.2e-18 | |
| UNIPROTKB|C9JD82 | 176 | BRDT "Bromodomain testis-speci | 0.237 | 0.642 | 0.398 | 1.2e-18 |
| TAIR|locus:2142305 AT5G46550 "AT5G46550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 369 (135.0 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 73/141 (51%), Positives = 103/141 (73%)
Query: 71 ASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRP 130
+SE SK+R P ++ EV PK K+ ++D + QC +L+ LM H GW+F P
Sbjct: 41 SSEKSKKRGG--P---KELDEV--QPK-KKQRLDCDWSSQCLALLRFLMEHRGGWLFKEP 92
Query: 131 VDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190
VDPVK++IPDYF++I KPMDLGTVK++L +N+YS +DEF ADVRLTF+NAM YNP N V
Sbjct: 93 VDPVKMEIPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEV 152
Query: 191 HKMAQELNNLFDIKWKSLEEK 211
H +A+E+N +F+++W+SL +K
Sbjct: 153 HTIAKEINEIFEVRWESLMKK 173
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| TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|C9J1F7 BRDT "Bromodomain testis-specific protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|C9JD82 BRDT "Bromodomain testis-specific protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GTE901 | global transcription factor group (564 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 7e-53 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 3e-35 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 5e-30 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-29 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 2e-28 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 5e-27 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 2e-26 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 5e-24 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 1e-23 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 3e-23 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 2e-22 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 2e-18 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 2e-18 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 7e-17 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 3e-15 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 8e-14 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 1e-13 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 2e-13 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 3e-13 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 1e-12 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 2e-12 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 1e-11 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 2e-11 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 5e-11 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 9e-11 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 2e-10 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 3e-10 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 4e-10 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 8e-10 | |
| cd05524 | 113 | cd05524, Bromo_polybromo_I, Bromodomain, polybromo | 3e-09 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 1e-07 | |
| cd05517 | 103 | cd05517, Bromo_polybromo_II, Bromodomain, polybrom | 2e-07 | |
| cd05494 | 114 | cd05494, Bromodomain_1, Bromodomain; uncharacteriz | 4e-07 | |
| cd05501 | 102 | cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li | 2e-05 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 3e-05 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 0.002 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
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Score = 172 bits (439), Expect = 7e-53
Identities = 60/99 (60%), Positives = 73/99 (73%)
Query: 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVS 166
V QC +L+ LM H GWVFN PVD V L +PDYF II KPMDLGTVK +L++ YS
Sbjct: 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205
+EF ADVRLTF+NAM YNPP N+VH MA+EL +F+ +W
Sbjct: 61 EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99
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Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
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| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
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| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
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| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
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| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
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| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
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| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
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| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
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| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
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| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
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| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
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| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
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| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.95 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.95 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.95 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.94 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.93 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.93 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.93 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.93 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.93 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.93 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.93 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.93 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.93 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.92 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.92 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.92 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.91 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.91 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.91 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.91 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.91 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.89 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.89 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.89 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.89 | |
| smart00297 | 107 | BROMO bromo domain. | 99.89 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.88 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.88 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.88 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.87 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.86 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.85 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.85 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.85 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.84 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.74 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.73 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.7 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.5 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 99.31 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 99.31 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 99.21 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 99.06 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.97 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.97 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 98.9 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 98.61 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.55 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 98.24 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 98.11 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 97.53 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 96.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 89.6 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 88.03 |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=263.10 Aligned_cols=116 Identities=46% Similarity=0.831 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011929 100 RPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 100 r~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (475)
..++...++++|..||..|+.|.++|||..|||+.++++||||+||++||||+||++||..+.|.++.||.+||||||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 011929 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
|++||+++++||.||..|+++|+.+|..++..+...
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~ 331 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEES 331 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999987665543
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 475 | ||||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 7e-19 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 2e-18 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 2e-18 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 3e-18 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 4e-18 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 4e-18 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 4e-18 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 5e-18 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 1e-17 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 1e-17 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 4e-17 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 4e-17 | ||
| 2ouo_A | 130 | Crystal Structure Of The Bromo Domain 2 In Human Br | 5e-17 | ||
| 2lsp_B | 128 | Solution Structures Of Brd4 Second Bromodomain With | 5e-17 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 6e-17 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 6e-17 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 7e-17 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 2e-16 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 3e-16 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 4e-16 | ||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 5e-16 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 2e-15 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 3e-15 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 5e-15 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 5e-15 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 9e-15 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 9e-15 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 1e-14 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 2e-14 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 4e-14 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 4e-14 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 6e-14 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 2e-13 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 3e-13 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 3e-13 | ||
| 2dww_A | 114 | Crystal Structure Of Bromodomain-Containing Protein | 7e-13 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 5e-12 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 8e-12 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 1e-11 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 2e-11 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 2e-11 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 6e-11 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 1e-10 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 1e-10 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 1e-10 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 2e-10 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 2e-10 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 2e-10 | ||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-10 | ||
| 3fkm_X | 166 | Plasmodium Falciparum Bromodomain-Containing Protei | 3e-09 | ||
| 3dai_A | 130 | Crystal Structure Of The Bromodomain Of The Human A | 2e-08 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 4e-08 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 7e-08 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 7e-08 | ||
| 2yqd_A | 120 | Solution Structure Of The Fifth Bromodomain From Mo | 4e-07 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 6e-07 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 6e-07 | ||
| 3hme_A | 123 | Crystal Structure Of Human Bromodomain Containing 9 | 6e-07 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 7e-07 | ||
| 2r10_A | 361 | Structure Of An Acetylated Rsc4 Tandem Bromodomain | 1e-06 | ||
| 3tlp_A | 150 | Crystal Structure Of The Fourth Bromodomain Of Huma | 2e-06 | ||
| 2dkw_A | 131 | Solution Structure Of The Bromodomain Of Human Prot | 2e-06 | ||
| 3g0j_A | 124 | Crystal Structure Of The Fifth Bromodomain Of Human | 2e-06 | ||
| 2r0v_A | 346 | Structure Of The Rsc4 Tandem Bromodomain Acetylated | 2e-06 | ||
| 3k2j_A | 130 | Crystal Structure Of The 3rd Bromodomain Of Human P | 3e-06 | ||
| 2i7k_A | 117 | Solution Structure Of The Bromodomain Of Human Brd7 | 1e-05 | ||
| 2d9e_A | 121 | Solution Structure Of The Bromodomain Of Peregrin L | 2e-05 | ||
| 3iu5_A | 116 | Crystal Structure Of The First Bromodomain Of Human | 2e-05 | ||
| 2r0s_A | 285 | Crystal Structure Of The Rsc4 Tandem Bromodomain Le | 4e-05 | ||
| 2r0y_A | 311 | Structure Of The Rsc4 Tandem Bromodomain In Complex | 4e-05 | ||
| 3rcw_A | 135 | Crystal Structure Of The Bromodomain Of Human Brd1 | 2e-04 |
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
|
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
| >pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 | Back alignment and structure |
| >pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 | Back alignment and structure |
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
| >pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 | Back alignment and structure |
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
| >pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 | Back alignment and structure |
| >pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 | Back alignment and structure |
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
| >pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 | Back alignment and structure |
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
| >pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 | Back alignment and structure |
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
| >pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 | Back alignment and structure |
| >pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 | Back alignment and structure |
| >pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 | Back alignment and structure |
| >pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 | Back alignment and structure |
| >pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 | Back alignment and structure |
| >pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130 | Back alignment and structure |
| >pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 | Back alignment and structure |
| >pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 | Back alignment and structure |
| >pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
| >pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 | Back alignment and structure |
| >pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 | Back alignment and structure |
| >pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-49
Identities = 43/116 (37%), Positives = 65/116 (56%)
Query: 96 PKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVK 155
+K + + + V+LK+L H W F +PVD VKL++PDY+ II PMD+GT+K
Sbjct: 11 NPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIK 70
Query: 156 TRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211
RL+ N Y + E + D F+N +YN P +++ MA+ L LF K L +
Sbjct: 71 KRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 | Back alignment and structure |
|---|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.96 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.95 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.95 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.95 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.95 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.95 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.95 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.95 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.94 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.94 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.94 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.94 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.94 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.94 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.94 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.94 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.94 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.94 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.94 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.94 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.93 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.93 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.93 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.93 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.92 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.92 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.91 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.91 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.91 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.9 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.9 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.9 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.89 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.89 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.87 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.87 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.85 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.85 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.79 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.78 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.73 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.52 |
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=213.85 Aligned_cols=107 Identities=29% Similarity=0.584 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011929 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
+.....+..|..||..|+.++.+++|++||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCE 86 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011929 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
.||+++|.+|.+|..|++.|++.|++++.
T Consensus 87 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 87 TFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999874
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 475 | ||||
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 6e-31 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 5e-29 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 1e-28 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 2e-28 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 7e-27 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 4e-26 |
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 6e-31
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 111 CSVILKSLM-MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEF 169
L++L P F +PVDP L IPDYF I+ PMDL T+K +LD Y ++
Sbjct: 11 LMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQY 70
Query: 170 VADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211
V DV L F+NA LYN + V+K +L +F+ + + +
Sbjct: 71 VDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.94 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.94 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.94 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.93 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.93 |
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-27 Score=201.06 Aligned_cols=100 Identities=32% Similarity=0.608 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011929 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
++...|..||..|.+|+.+++|+.||++. ++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 79 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 79 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChh--hCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence 57789999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 011929 186 PENNVHKMAQELNNLFDIKWKS 207 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~ke 207 (475)
++|.+|.+|..|++.|+++|++
T Consensus 80 ~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 80 PDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998875
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|