Query 011930
Match_columns 474
No_of_seqs 219 out of 2168
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 1.7E-26 3.6E-31 229.5 29.5 236 82-441 13-249 (266)
2 COG0730 Predicted permeases [G 99.9 2.2E-25 4.7E-30 220.2 29.4 240 81-440 7-248 (258)
3 PF01925 TauE: Sulfite exporte 99.9 2.1E-25 4.5E-30 216.9 22.9 230 86-439 3-237 (240)
4 PRK10621 hypothetical protein; 99.3 5.5E-11 1.2E-15 118.3 15.8 107 332-439 12-118 (266)
5 COG0730 Predicted permeases [G 99.2 1.9E-10 4.2E-15 113.7 15.7 108 332-439 7-114 (258)
6 PF01925 TauE: Sulfite exporte 99.0 5.2E-09 1.1E-13 101.7 13.1 111 77-198 125-239 (240)
7 PF04018 DUF368: Domain of unk 94.1 7.2 0.00016 39.0 22.5 81 333-433 143-223 (257)
8 COG2119 Predicted membrane pro 80.0 56 0.0012 31.1 15.9 49 153-201 36-84 (190)
9 PF02673 BacA: Bacitracin resi 78.3 77 0.0017 31.7 20.7 88 113-200 29-126 (259)
10 KOG2881 Predicted membrane pro 72.4 29 0.00064 34.7 9.6 51 158-208 106-156 (294)
11 COG3619 Predicted membrane pro 67.4 1.3E+02 0.0028 29.5 13.8 35 152-186 168-202 (226)
12 TIGR02840 spore_YtaF putative 66.2 1.3E+02 0.0028 29.0 19.8 44 161-204 40-83 (206)
13 PRK00281 undecaprenyl pyrophos 66.2 1.5E+02 0.0033 29.8 22.3 85 114-199 36-129 (268)
14 COG3180 AbrB Putative ammonia 59.5 96 0.0021 32.5 10.9 98 329-448 8-105 (352)
15 COG2119 Predicted membrane pro 52.4 49 0.0011 31.5 6.7 50 153-202 135-184 (190)
16 COG1968 BacA Undecaprenyl pyro 47.0 3.2E+02 0.007 27.6 20.8 65 121-185 43-114 (270)
17 COG1288 Predicted membrane pro 46.6 2.2E+02 0.0047 30.9 11.1 24 104-128 163-186 (481)
18 PF01169 UPF0016: Uncharacteri 45.3 63 0.0014 26.2 5.6 43 153-195 35-77 (78)
19 PF07172 GRP: Glycine rich pro 40.8 42 0.00091 28.4 4.0 9 25-33 17-25 (95)
20 PF05145 AmoA: Putative ammoni 40.3 4.3E+02 0.0093 27.1 20.3 90 330-442 155-245 (318)
21 PRK10263 DNA translocase FtsK; 37.7 4.5E+02 0.0097 32.5 13.0 20 405-424 141-160 (1355)
22 PF01169 UPF0016: Uncharacteri 36.6 1.1E+02 0.0023 24.8 5.7 36 401-436 40-75 (78)
23 PF04066 MrpF_PhaF: Multiple r 35.9 1.9E+02 0.004 21.7 6.7 53 368-420 2-54 (55)
24 PF09605 Trep_Strep: Hypotheti 34.8 1.4E+02 0.0031 28.1 7.1 32 397-428 154-185 (186)
25 COG3918 Predicted membrane pro 32.7 3.6E+02 0.0078 24.0 8.6 12 77-88 77-88 (153)
26 COG1971 Predicted membrane pro 32.0 4.6E+02 0.01 25.1 18.5 43 162-205 48-90 (190)
27 COG3247 HdeD Uncharacterized c 31.6 4.6E+02 0.01 25.0 12.8 64 131-201 57-120 (185)
28 KOG2533 Permease of the major 31.6 7.2E+02 0.016 27.2 15.9 28 258-285 266-293 (495)
29 PRK01844 hypothetical protein; 30.3 1.2E+02 0.0026 24.4 4.8 30 400-429 6-35 (72)
30 COG2035 Predicted membrane pro 28.9 6.3E+02 0.014 25.6 24.5 71 86-179 9-79 (276)
31 PRK00523 hypothetical protein; 28.9 1.3E+02 0.0029 24.2 4.8 29 400-428 7-35 (72)
32 PTZ00370 STEVOR; Provisional 28.4 3.5E+02 0.0075 27.6 8.8 16 166-181 242-257 (296)
33 COG4129 Predicted membrane pro 27.1 7.3E+02 0.016 25.8 12.0 19 162-180 130-148 (332)
34 PF03817 MadL: Malonate transp 26.4 4.6E+02 0.01 23.3 8.1 30 336-365 87-116 (125)
35 PF11833 DUF3353: Protein of u 25.5 4.3E+02 0.0093 25.2 8.6 27 154-180 139-165 (194)
36 PF11368 DUF3169: Protein of u 24.9 6.6E+02 0.014 24.5 15.2 26 154-179 8-33 (248)
37 PRK00968 tetrahydromethanopter 24.2 4.5E+02 0.0098 25.7 8.3 23 87-112 144-166 (240)
38 PF04018 DUF368: Domain of unk 24.1 4.4E+02 0.0095 26.4 8.7 34 394-427 50-83 (257)
39 COG3416 Uncharacterized protei 22.5 62 0.0013 31.3 2.2 26 88-113 137-162 (233)
40 PF08507 COPI_assoc: COPI asso 22.4 1.1E+02 0.0025 27.1 3.9 22 182-203 85-106 (136)
41 COG4060 MtrD Tetrahydromethano 22.2 2E+02 0.0044 27.2 5.4 36 337-372 135-170 (230)
42 PRK11588 hypothetical protein; 22.1 1.1E+03 0.024 26.1 14.2 24 106-129 174-200 (506)
43 PF10399 UCR_Fe-S_N: Ubiquitin 21.6 40 0.00087 24.1 0.6 16 97-112 22-37 (41)
44 PF08199 E2: Bacteriophage E2- 21.5 32 0.00069 23.3 0.1 12 463-474 19-30 (37)
45 COG1346 LrgB Putative effector 21.2 8.1E+02 0.017 24.2 18.5 60 362-423 113-172 (230)
46 PRK10263 DNA translocase FtsK; 21.0 6.5E+02 0.014 31.2 10.5 22 161-182 140-161 (1355)
47 PF05232 BTP: Bacterial Transm 20.6 2.1E+02 0.0045 22.5 4.5 38 104-141 19-56 (67)
48 PF05052 MerE: MerE protein; 20.5 3.1E+02 0.0066 22.2 5.3 17 161-177 34-50 (75)
49 TIGR02230 ATPase_gene1 F0F1-AT 20.1 4E+02 0.0087 22.8 6.4 23 159-181 50-72 (100)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=229.49 Aligned_cols=236 Identities=20% Similarity=0.216 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Q 011930 82 VVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLF 161 (474)
Q Consensus 82 i~g~iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~l~l~l 161 (474)
+..+++|+++|++++..| |||.+.+|+|.. +++||++|+++|.+.++.+++++.+.|.+++| +||+...++
T Consensus 13 ~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~~l 83 (266)
T PRK10621 13 GVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQKLN 83 (266)
T ss_pred HHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHH
Confidence 455667888888888889 999999999974 79999999999999999999999998888888 999999999
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcccccccCcCCCCCCCC
Q 011930 162 QPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSG 241 (474)
Q Consensus 162 ~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~~~k~e~~~kk~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (474)
.+++++|+.+|+++..++|++.++.+++++++..+.+++.+ ++++ ++ +. .
T Consensus 84 ~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~----~~~~---~~----------------~~-~------ 133 (266)
T PRK10621 84 IAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM----PKLG---EE----------------DR-Q------ 133 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC----Cccc---cc----------------cc-c------
Confidence 99999999999999999999999999998888877666533 0100 00 00 0
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHhhhhhhHHHHHHHHHHHHHhhccccccccc
Q 011930 242 PSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKG 321 (474)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~~~~cs~~yw~~~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~ 321 (474)
++ ++
T Consensus 134 ------~~--------~~-------------------------------------------------------------- 137 (266)
T PRK10621 134 ------RR--------LY-------------------------------------------------------------- 137 (266)
T ss_pred ------cc--------cc--------------------------------------------------------------
Confidence 00 00
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhH
Q 011930 322 KEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPY 400 (474)
Q Consensus 322 ~~~~~~~~~~~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~ 400 (474)
. .......|+++|+++|++|+|+|.+.+|.++ .++.|++++++|+.+..+.++..+...|...|.+||..
T Consensus 138 --~-------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~ 208 (266)
T PRK10621 138 --G-------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWAT 208 (266)
T ss_pred --c-------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHH
Confidence 0 0012457899999999999999999998775 67999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011930 401 AAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIF 441 (474)
Q Consensus 401 ~l~l~~gaiiGa~iG~~l~~~l~~~~~r~~lii~Il~~~i~ 441 (474)
++.+.+++++|+++|+++.+|++++.+|+.+..+++...+-
T Consensus 209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~ 249 (266)
T PRK10621 209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAK 249 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888876654433
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=220.19 Aligned_cols=240 Identities=24% Similarity=0.381 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHH
Q 011930 81 VVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALL 160 (474)
Q Consensus 81 ~i~g~iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~l~l~ 160 (474)
.++.+.+|+++|++++..|+|||.+.+|.|..+ ++||+.|.+++++....++..+.+.|+|++| +||+.+..
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~-~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~~ 78 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLL-GLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLALI 78 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHHH
Confidence 455667888888888888999999999999985 5999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcccccccCcCCCCCCC
Q 011930 161 FQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPS 240 (474)
Q Consensus 161 l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~~~k~e~~~kk~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (474)
+.+++++|+.+|+++..++|++.++..+..+++..+.+++++... + ++| +.+.
T Consensus 79 l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~---~~~---------------~~~~----- 131 (258)
T COG0730 79 LLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----A---KAE---------------DRAA----- 131 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----c---ccc---------------cccc-----
Confidence 999999999999999999999999999999999998888865211 0 000 0000
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHhhhhhhHHHHHHHHHHHHHhhcccccccc
Q 011930 241 GPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASK 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~~~~cs~~yw~~~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ 320 (474)
+. .+|
T Consensus 132 -------~~------~~~-------------------------------------------------------------- 136 (258)
T COG0730 132 -------RL------RPL-------------------------------------------------------------- 136 (258)
T ss_pred -------cc------Ccc--------------------------------------------------------------
Confidence 00 000
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHH-hCCcch
Q 011930 321 GKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYL-LDRFPV 398 (474)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~-~G~i~~ 398 (474)
.......+|+.+|+++|++|+|||+..+|.+. ..+.|.+.+++|+.+...+++..+...|.. .|.+||
T Consensus 137 ----------~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~ 206 (258)
T COG0730 137 ----------LFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDW 206 (258)
T ss_pred ----------hhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 01123568899999999999999999999996 568999999999999999999999999999 699999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011930 399 PYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTI 440 (474)
Q Consensus 399 ~~~l~l~~gaiiGa~iG~~l~~~l~~~~~r~~lii~Il~~~i 440 (474)
.....+.+++++|+++|+|+.+|++++.+|+.+..+++...+
T Consensus 207 ~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~ 248 (258)
T COG0730 207 PLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAI 248 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 988799999999999999999999999999988776655443
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.94 E-value=2.1e-25 Score=216.88 Aligned_cols=230 Identities=26% Similarity=0.428 Sum_probs=193.1
Q ss_pred HHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHH
Q 011930 86 IVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPML 165 (474)
Q Consensus 86 iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~l~l~l~~~~ 165 (474)
++++++|++.+..|+|||.+.+|+|.. + +|+++|++++......++..+.+.|+|+++ +||+...++.+++
T Consensus 3 ~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~ 73 (240)
T PF01925_consen 3 LIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIGA 73 (240)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhHh
Confidence 466777777777799999999999998 4 899999999999999999999999888776 9999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcccccccCcCCCCCCCCCCCC
Q 011930 166 MLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTV 245 (474)
Q Consensus 166 ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~~~k~e~~~kk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (474)
++|+.+|+++...+|++.++..++++++..+.+++.+. +++ .+++ + +.+
T Consensus 74 ~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~-----~~~-~~~~---------------~-~~~--------- 122 (240)
T PF01925_consen 74 LIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK-----RRK-TPKS---------------R-SSP--------- 122 (240)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc-----ccc-cccc---------------c-ccc---------
Confidence 99999999999999999999999999998887776431 000 0000 0 000
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHhhhhhhHHHHHHHHHHHHHhhccccccccccccc
Q 011930 246 HDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEIT 325 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~~~~cs~~yw~~~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~ 325 (474)
.+
T Consensus 123 -~~----------------------------------------------------------------------------- 124 (240)
T PF01925_consen 123 -PK----------------------------------------------------------------------------- 124 (240)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHhhhccchhhHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH
Q 011930 326 NWKIHQIVFYCFCGIV-AGMVGGLLGLGGGFILGPLFLE-LGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAF 403 (474)
Q Consensus 326 ~~~~~~~~~~~~~G~l-aG~vsGllGiGGG~ilvP~Ll~-~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~ 403 (474)
......+|.+ +|+++|++|+|+|++..|++.. .+.|+++++||+.+.+++++..+...|...|.+||+....
T Consensus 125 ------~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 198 (240)
T PF01925_consen 125 ------RWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLL 198 (240)
T ss_pred ------hhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 0012334555 9999999999999999999974 6999999999999999999999999999999999987666
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011930 404 ---FTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALT 439 (474)
Q Consensus 404 ---l~~gaiiGa~iG~~l~~~l~~~~~r~~lii~Il~~~ 439 (474)
+.+++++|+++|+++.++++++.+|+.+..+++...
T Consensus 199 ~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~ 237 (240)
T PF01925_consen 199 SLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSG 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888766544
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.30 E-value=5.5e-11 Score=118.34 Aligned_cols=107 Identities=18% Similarity=0.315 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q 011930 332 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 411 (474)
Q Consensus 332 ~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~gaiiG 411 (474)
....+.+|+++|+++|+.| |||.+.+|++..+++||++|++|+.+..+.+++.+...|..++++||+....+.+++++|
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~G 90 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVG 90 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556778999999999999 999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011930 412 AFAGQHVVRKIIAVLGRASIIVFILALT 439 (474)
Q Consensus 412 a~iG~~l~~~l~~~~~r~~lii~Il~~~ 439 (474)
+.+|+.+...+|++.+|..+.++++...
T Consensus 91 a~~G~~l~~~l~~~~l~~~~~~~ll~~~ 118 (266)
T PRK10621 91 SMSGALLVQYVQADILRQILPILVIGIG 118 (266)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876655443
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.24 E-value=1.9e-10 Score=113.66 Aligned_cols=108 Identities=31% Similarity=0.463 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q 011930 332 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 411 (474)
Q Consensus 332 ~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~gaiiG 411 (474)
......+|+++|+++|++|.|||.+.+|.++.+++||++|.+|+.....+++..+...|+..|++||+....+.+++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011930 412 AFAGQHVVRKIIAVLGRASIIVFILALT 439 (474)
Q Consensus 412 a~iG~~l~~~l~~~~~r~~lii~Il~~~ 439 (474)
+.+|+.+..+++++.++..+.++++...
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~ll~~~ 114 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLLLLLA 114 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666655443
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.99 E-value=5.2e-09 Score=101.72 Aligned_cols=111 Identities=26% Similarity=0.496 Sum_probs=96.7
Q ss_pred hhHHHHHHHH-HHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccH
Q 011930 77 FGWKVVVGSI-VGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDY 155 (474)
Q Consensus 77 ~~~~~i~g~i-iG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~ 155 (474)
..+...+|.+ +|+++|++ |+|||.+.+|++..+.+.|++++.+++..+.+.++..+...|...+. +||
T Consensus 125 ~~~~~~~g~~~~G~~~G~~----g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~-------~~~ 193 (240)
T PF01925_consen 125 RWLLFLLGGLFIGFLSGLF----GIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGD-------VDW 193 (240)
T ss_pred hhhhhhhhHHHhhHHHhhh----hccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccH
Confidence 3334555555 78877777 99999999999998789999999999999999999999988888776 889
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 011930 156 DLALL---FQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTK 198 (474)
Q Consensus 156 ~l~l~---l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~ 198 (474)
+.... +.+++++|+.+|.++.+++|++.++.++.++++..+.+
T Consensus 194 ~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 194 PMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 87777 99999999999999999999999999999999887765
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=94.05 E-value=7.2 Score=38.99 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 011930 333 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 412 (474)
Q Consensus 333 ~~~~~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~gaiiGa 412 (474)
...+++|++++.--=+=|+.|..+ |+.+|.=.....+-+.+.. -|+....++..|.++|.
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 445667776655555556666633 3344543333333332222 47788899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 011930 413 FAGQHVVRKIIAVLGRASIIV 433 (474)
Q Consensus 413 ~iG~~l~~~l~~~~~r~~lii 433 (474)
..-+|+.+++-+++.+.....
T Consensus 203 ~~~skll~~ll~~~~~~t~~~ 223 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAF 223 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877775544
No 8
>COG2119 Predicted membrane protein [Function unknown]
Probab=80.00 E-value=56 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 201 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~ 201 (474)
+--..+.-...+-.+.+.+|.+....+|++...+..+..++..+++++.
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 4455666678888999999999999999999999999888888776663
No 9
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=78.33 E-value=77 Score=31.69 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=56.0
Q ss_pred hhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCC--------CCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 011930 113 IIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPT--------LDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMV 184 (474)
Q Consensus 113 l~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~--------~~~p~id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l 184 (474)
++|.++...........+++.++-.++++++-..- .+..--++++...+.++.++-+.+|..+-..+.+...
T Consensus 29 llg~~~~~~~~f~v~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~ 108 (259)
T PF02673_consen 29 LLGWDPEPGLAFDVFLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALFF 108 (259)
T ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788777777778888888888887766431100 0011246888888999999999999877766665442
Q ss_pred --HHHHHHHHHHHHHHHH
Q 011930 185 --TVLLIILFIGTSTKAL 200 (474)
Q Consensus 185 --~~ll~i~ll~~~~~~l 200 (474)
....+..+++.+..+.
T Consensus 109 ~~~~~v~~~Li~~g~lL~ 126 (259)
T PF02673_consen 109 SSPLVVAIALIITGLLLW 126 (259)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 2234444454444333
No 10
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=72.41 E-value=29 Score=34.74 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011930 158 ALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWK 208 (474)
Q Consensus 158 ~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~~~k 208 (474)
...+..+.++.+.+|-..-..+|...-.++-.+++++.+.|+++.+.++-+
T Consensus 106 ~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~ 156 (294)
T KOG2881|consen 106 MSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSP 156 (294)
T ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 344567888888999766677887777777888888999999998876543
No 11
>COG3619 Predicted membrane protein [Function unknown]
Probab=67.43 E-value=1.3e+02 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 011930 152 LIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTV 186 (474)
Q Consensus 152 ~id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ 186 (474)
..||..-....++-+.|+..|+++...+.+..+-.
T Consensus 168 ~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~ 202 (226)
T COG3619 168 LRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 47888888889999999999999988887765443
No 12
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=66.23 E-value=1.3e+02 Score=28.96 Aligned_cols=44 Identities=7% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhh
Q 011930 161 FQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGI 204 (474)
Q Consensus 161 l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~ 204 (474)
-..+..+|..+|..+..++|++.-+++=++++++.+.++++++.
T Consensus 40 ~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 40 SGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888888877788888999999999998765
No 13
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=66.17 E-value=1.5e+02 Score=29.80 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=47.6
Q ss_pred hCCChhhHHHhHHHHHHHHHHHHHHHHHHhcC--------CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 011930 114 IGFDPKSATAISKCMIMGAAGSTVYYNLRLRH--------PTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVT 185 (474)
Q Consensus 114 ~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~--------~~~~~p~id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~ 185 (474)
+|++............+++-++-.++++++-. ...+ +--++++.+.+..+.+|.+.+|..+...+++..-+
T Consensus 36 lg~~~~~~~~f~v~lhlGtllAvl~~fr~di~~~~~~~~~~~~~-~~~~~~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~ 114 (268)
T PRK00281 36 LGFEDDFGKTFDVVIQLGAILAVVVYFRRRLWRLLGGSGKGGRG-DREDRRLLLLVIVATIPAGVLGLLFKDFIKEHLFS 114 (268)
T ss_pred hCCCccccceehhHHHHhhHHHHHHHHHHHHHHHHHhhcccccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45543322235566666776666666554310 0011 11367888888999999999998777666543211
Q ss_pred -HHHHHHHHHHHHHH
Q 011930 186 -VLLIILFIGTSTKA 199 (474)
Q Consensus 186 -~ll~i~ll~~~~~~ 199 (474)
...+..+++.+..+
T Consensus 115 ~~~v~~~Lii~gilL 129 (268)
T PRK00281 115 PIVVAIALIVGGILL 129 (268)
T ss_pred hHHHHHHHHHHHHHH
Confidence 24455555554433
No 14
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=59.51 E-value=96 Score=32.48 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q 011930 329 IHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVA 408 (474)
Q Consensus 329 ~~~~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~ga 408 (474)
.+++...+..+.+.|.+....++..+.++.+.+.. .++.-..-.++.++..+....=.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a----------------------~~v~~~~~~~l~~P~~l~~~~q~ 65 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLA----------------------GIVAGLRGLTLPLPRGLFKAGQV 65 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------HHHHHhccccccCChHHHHHHHH
Confidence 35556677788888888888888777777733321 11111222345555566666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011930 409 TFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLG 448 (474)
Q Consensus 409 iiGa~iG~~l~~~l~~~~~r~~lii~Il~~~i~~s~i~l~ 448 (474)
++|..+|+++....-+...+....++..+.....+++.+|
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g 105 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLG 105 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 7777777777776666666655555555555555555444
No 15
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.38 E-value=49 Score=31.48 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 202 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~ 202 (474)
+--...+-+.+.++++...|-+++.++|.+.++.+-++++++.+...++.
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999999999999999999999888888766654
No 16
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=47.02 E-value=3.2e+02 Score=27.61 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCC-------CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 011930 121 ATAISKCMIMGAAGSTVYYNLRLRHP-------TLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVT 185 (474)
Q Consensus 121 Ava~S~~~i~~~s~~~~~~~~~~~~~-------~~~~p~id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~ 185 (474)
+.......++++-++-+++++++-.+ ..|..--+|++.+...++.+|-+.+|..+.....+....
T Consensus 43 ~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~ 114 (270)
T COG1968 43 GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLFN 114 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHccC
Confidence 55556667777777777766543110 011111227788888999999999998877765554433
No 17
>COG1288 Predicted membrane protein [Function unknown]
Probab=46.62 E-value=2.2e+02 Score=30.89 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=16.8
Q ss_pred hchHHHHHHhhCCChhhHHHhHHHH
Q 011930 104 GIFVPMLTLIIGFDPKSATAISKCM 128 (474)
Q Consensus 104 ~i~vP~L~ll~g~~~~~Ava~S~~~ 128 (474)
.+.+|++.. .|+|+-.++++..+.
T Consensus 163 pIliPv~ia-lGyDsi~~va~i~lg 186 (481)
T COG1288 163 PILIPLMVA-LGYDSITGVAIIYIG 186 (481)
T ss_pred HHHHHHHHH-hCCchHHHHHHHHHH
Confidence 456677665 788888888776554
No 18
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=45.31 E-value=63 Score=26.17 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGT 195 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~ 195 (474)
+-....+-+.....++...|.++.+++|++.++++-+++++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLF 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3445556678888999999999999999999999888777653
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.76 E-value=42 Score=28.41 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.2
Q ss_pred HHHHHHHHh
Q 011930 25 IMMEKLSNA 33 (474)
Q Consensus 25 ~~~~~~~~~ 33 (474)
++++.-++|
T Consensus 17 LlisSevaa 25 (95)
T PF07172_consen 17 LLISSEVAA 25 (95)
T ss_pred HHHHhhhhh
Confidence 333333333
No 20
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=40.25 E-value=4.3e+02 Score=27.11 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HhCCcchhHHHHHHHHH
Q 011930 330 HQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYY-LLDRFPVPYAAFFTLVA 408 (474)
Q Consensus 330 ~~~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ATs~~~~~~ss~~s~~~~~-~~G~i~~~~~l~l~~ga 408 (474)
..+.....++.++|.+.=.+++=.+.++.|++.. ...+. .....+++..+....-.
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~-----------------------a~~~~~~~~~~~~P~~l~~~aqv 211 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVS-----------------------AILNLFGGPSFSLPPWLVNAAQV 211 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----------------------HHHHHHhCCCCCCCHHHHHHHHH
Confidence 3344455556666666665565555555554432 11111 12234555556666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011930 409 TFAAFAGQHVVRKIIAVLGRASIIVFILALTIFV 442 (474)
Q Consensus 409 iiGa~iG~~l~~~l~~~~~r~~lii~Il~~~i~~ 442 (474)
++|..+|.++.+....+..|.....++....++.
T Consensus 212 ~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~ 245 (318)
T PF05145_consen 212 LIGASIGSRFTRETLRELRRLLPPALLSTLLLLA 245 (318)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888766655555554444444333333
No 21
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.75 E-value=4.5e+02 Score=32.53 Aligned_cols=20 Identities=0% Similarity=-0.027 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 011930 405 TLVATFAAFAGQHVVRKIIA 424 (474)
Q Consensus 405 ~~gaiiGa~iG~~l~~~l~~ 424 (474)
..|+++|..++..+...+..
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred cccchHHHHHHHHHHHHHhH
Confidence 45777777776655555543
No 22
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=36.57 E-value=1.1e+02 Score=24.81 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011930 401 AAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFIL 436 (474)
Q Consensus 401 ~l~l~~gaiiGa~iG~~l~~~l~~~~~r~~lii~Il 436 (474)
.+-+.....++..+|..+.+++|+++.+..-.++.+
T Consensus 40 ~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl 75 (78)
T PF01169_consen 40 TLALALATGLAVLLGSWLASRIPERYIKWVAGALFL 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 445667778899999999999999999997666544
No 23
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=35.86 E-value=1.9e+02 Score=21.68 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011930 368 PQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVR 420 (474)
Q Consensus 368 ~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~ 420 (474)
|....|.+.+...................-.+.++.....+++|+..-+|..+
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788888888887777777766555567888888888888888777654
No 24
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=34.81 E-value=1.4e+02 Score=28.13 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011930 397 PVPYAAFFTLVATFAAFAGQHVVRKIIAVLGR 428 (474)
Q Consensus 397 ~~~~~l~l~~gaiiGa~iG~~l~~~l~~~~~r 428 (474)
+.+....+...+++++.+|+.+.+|+-+|+++
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566777778888888888888887777654
No 25
>COG3918 Predicted membrane protein [Function unknown]
Probab=32.66 E-value=3.6e+02 Score=24.00 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHH
Q 011930 77 FGWKVVVGSIVG 88 (474)
Q Consensus 77 ~~~~~i~g~iiG 88 (474)
|+.+++.|.+.|
T Consensus 77 FgaRiimGAf~G 88 (153)
T COG3918 77 FGARIIMGAFAG 88 (153)
T ss_pred Hhhhhhhhhhcc
Confidence 555555555444
No 26
>COG1971 Predicted membrane protein [Function unknown]
Probab=32.03 E-value=4.6e+02 Score=25.09 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011930 162 QPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGID 205 (474)
Q Consensus 162 ~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~ 205 (474)
.++-.+|...|-+++++.. ..-+++-.+++.+.+++|++++.+
T Consensus 48 ~i~pliG~~~g~~~s~~i~-~~~~wigf~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 48 AIMPLIGWFIGKFLSTFIA-EWAHWIGFVLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666665554443 445667778888899999987653
No 27
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=4.6e+02 Score=24.95 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 011930 131 GAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 201 (474)
Q Consensus 131 ~~s~~~~~~~~~~~~~~~~~p~id~~l~l~l~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~ 201 (474)
.+.+....+++..|+. + -.|.+.+.-......|...+.... ..+..+.+++++.+++.++.-..
T Consensus 57 i~Gi~~ii~af~~r~~----~-~~W~lll~Gil~i~~gil~~~~~~--~~~~~l~~lia~~~i~~GI~ri~ 120 (185)
T COG3247 57 ISGIIEIISAFGNRSD----N-SFWPLLLSGILSILLGILAGFNPG--LGALVLTYLIAIWFIASGILRIV 120 (185)
T ss_pred HHHHHHHHHHHHhccc----c-cchHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544431 0 347765544455555555543222 34566777777777776654433
No 28
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=31.60 E-value=7.2e+02 Score=27.21 Aligned_cols=28 Identities=25% Similarity=-0.005 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccc
Q 011930 258 WKELSLLLYVWLGFLAVQLAKEYVVPCS 285 (474)
Q Consensus 258 ~~~~~~~~~v~~~~~~l~i~~~~~~~cs 285 (474)
++|......+|...+..-..+.....|+
T Consensus 266 ~~~a~~dp~vw~~~l~~~~~~lv~~~~~ 293 (495)
T KOG2533|consen 266 FKEALKDPGVWPFSLCYFFLKLVNYGFS 293 (495)
T ss_pred HHHHHhchhHHHHHHHHHHHhhccccHH
Confidence 4455555667766665555554444443
No 29
>PRK01844 hypothetical protein; Provisional
Probab=30.34 E-value=1.2e+02 Score=24.41 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011930 400 YAAFFTLVATFAAFAGQHVVRKIIAVLGRA 429 (474)
Q Consensus 400 ~~l~l~~gaiiGa~iG~~l~~~l~~~~~r~ 429 (474)
..++.+++.++|..+|-+++++.-+++++.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777888888888887777653
No 30
>COG2035 Predicted membrane protein [Function unknown]
Probab=28.90 E-value=6.3e+02 Score=25.64 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHH
Q 011930 86 IVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPML 165 (474)
Q Consensus 86 iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~l~l~l~~~~ 165 (474)
+-|++-|+-..+=|+.||.+.+ ++|.--+ +..+++....+. ..+ .||....++..|.
T Consensus 9 ~kG~~mG~AdivPGVSGGTiAl-----ilGIYer----------lI~~i~~~~~~~-~~~-------~~~~fLi~l~~G~ 65 (276)
T COG2035 9 FKGILMGAADIVPGVSGGTIAL-----ILGIYER----------LIEAIAGIFKLD-EFK-------RNVLFLIPLGIGM 65 (276)
T ss_pred HHHHHHHHhhcCCCCchhHHHH-----HHHHHHH----------HHHHHhhhhhhh-hhh-------hhhHHHHHHHHHH
Confidence 4566666777788999998753 2222111 223333333221 122 6888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 011930 166 MLGISIGVAFNVMF 179 (474)
Q Consensus 166 ilG~~lGa~l~~~l 179 (474)
+.|...=+.+-+++
T Consensus 66 ~~~i~~~a~ii~~l 79 (276)
T COG2035 66 LLGIFLFAKIIEYL 79 (276)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776666554
No 31
>PRK00523 hypothetical protein; Provisional
Probab=28.85 E-value=1.3e+02 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011930 400 YAAFFTLVATFAAFAGQHVVRKIIAVLGR 428 (474)
Q Consensus 400 ~~l~l~~gaiiGa~iG~~l~~~l~~~~~r 428 (474)
+.++.+++.++|...|-+++++.-+++++
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777778888888888777765
No 32
>PTZ00370 STEVOR; Provisional
Probab=28.44 E-value=3.5e+02 Score=27.64 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhccH
Q 011930 166 MLGISIGVAFNVMFAD 181 (474)
Q Consensus 166 ilG~~lGa~l~~~lp~ 181 (474)
+.|...|+..+.+.|-
T Consensus 242 lagtAAtaAsaaF~Py 257 (296)
T PTZ00370 242 LAGTAASAASSAFYPY 257 (296)
T ss_pred ccchHHHHHHHhhccc
Confidence 4455556555555563
No 33
>COG4129 Predicted membrane protein [Function unknown]
Probab=27.05 E-value=7.3e+02 Score=25.79 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 011930 162 QPMLMLGISIGVAFNVMFA 180 (474)
Q Consensus 162 ~~~~ilG~~lGa~l~~~lp 180 (474)
..-.++|+.++..++.++|
T Consensus 130 ~l~~~vG~~~a~lvn~~~~ 148 (332)
T COG4129 130 FLLVFVGVGVAFLVNLVMP 148 (332)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 4566778888888887774
No 34
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.42 E-value=4.6e+02 Score=23.28 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHhcC
Q 011930 336 CFCGIVAGMVGGLLGLGGGFILGPLFLELG 365 (474)
Q Consensus 336 ~~~G~laG~vsGllGiGGG~ilvP~Ll~~g 365 (474)
.+-|-...+++|..-+-.++.++|++...+
T Consensus 87 Al~gG~~Allagi~av~~~~~~ip~lsr~g 116 (125)
T PF03817_consen 87 ALSGGPVALLAGIGAVAVCFLLIPLLSRIG 116 (125)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444556667677777889999986554
No 35
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.47 E-value=4.3e+02 Score=25.25 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011930 154 DYDLALLFQPMLMLGISIGVAFNVMFA 180 (474)
Q Consensus 154 d~~l~l~l~~~~ilG~~lGa~l~~~lp 180 (474)
-++-.+.-+.+.++|..+|..+...++
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466667777777888888888876664
No 36
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.91 E-value=6.6e+02 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011930 154 DYDLALLFQPMLMLGISIGVAFNVMF 179 (474)
Q Consensus 154 d~~l~l~l~~~~ilG~~lGa~l~~~l 179 (474)
-|+....+++|+++|+.+|.+....-
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999999998766544
No 37
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=24.15 E-value=4.5e+02 Score=25.73 Aligned_cols=23 Identities=48% Similarity=0.999 Sum_probs=17.2
Q ss_pred HHHHHHHHhhcccccchhchHHHHHH
Q 011930 87 VGFFGAALGSVGGVGGGGIFVPMLTL 112 (474)
Q Consensus 87 iG~lag~l~~v~GiGGG~i~vP~L~l 112 (474)
-|.++|++ +|+||+.++..++..
T Consensus 144 sGvIGg~l---GGiGG~LiY~al~~~ 166 (240)
T PRK00968 144 SGVIGGAL---GGIGGALIYIALLEL 166 (240)
T ss_pred hhhhhhhh---cccchHHHHHHHHHh
Confidence 44445555 389999999999986
No 38
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=24.11 E-value=4.4e+02 Score=26.38 Aligned_cols=34 Identities=3% Similarity=0.049 Sum_probs=24.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011930 394 DRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLG 427 (474)
Q Consensus 394 G~i~~~~~l~l~~gaiiGa~iG~~l~~~l~~~~~ 427 (474)
.+.|+.....+..|..+|....+++.+.+-+.+-
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp 83 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYP 83 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4667777778888888888777777766655444
No 39
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=62 Score=31.33 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=21.7
Q ss_pred HHHHHHHhhcccccchhchHHHHHHh
Q 011930 88 GFFGAALGSVGGVGGGGIFVPMLTLI 113 (474)
Q Consensus 88 G~lag~l~~v~GiGGG~i~vP~L~ll 113 (474)
||++|.+.+..||.||+++.=.|.-+
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~m 162 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEGM 162 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 79999999999999998876666554
No 40
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.42 E-value=1.1e+02 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.251 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011930 182 WMVTVLLIILFIGTSTKALFKG 203 (474)
Q Consensus 182 ~~l~~ll~i~ll~~~~~~l~~~ 203 (474)
..+..+.+.+++..+...+.-+
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~ 106 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILG 106 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766555433
No 41
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.19 E-value=2e+02 Score=27.17 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHhcCCChHHHH
Q 011930 337 FCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVAS 372 (474)
Q Consensus 337 ~~G~laG~vsGllGiGGG~ilvP~Ll~~gl~~~~A~ 372 (474)
.+.++.|+++|++|--||.+.-=.|...+.+....+
T Consensus 135 TV~FVSGiiGg~LGGiGGalvY~aL~~~~~t~~~gv 170 (230)
T COG4060 135 TVSFVSGIIGGLLGGIGGALVYYALYKVGLTMSAGV 170 (230)
T ss_pred eeeeehhhhhhhhcCccchhhHHHHHHHhcccchHH
Confidence 456788999999986566555555556666543333
No 42
>PRK11588 hypothetical protein; Provisional
Probab=22.08 E-value=1.1e+03 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=14.1
Q ss_pred hHHHHHHh---hCCChhhHHHhHHHHH
Q 011930 106 FVPMLTLI---IGFDPKSATAISKCMI 129 (474)
Q Consensus 106 ~vP~L~ll---~g~~~~~Ava~S~~~i 129 (474)
++|+++.+ +|+|+-.++++..+..
T Consensus 174 f~pi~v~l~~alGyD~ivg~ai~~lg~ 200 (506)
T PRK11588 174 FAIIIAPLMVRLGYDSITTVLVTYVAT 200 (506)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHh
Confidence 44544332 6777777777665544
No 43
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=21.61 E-value=40 Score=24.07 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.9
Q ss_pred cccccchhchHHHHHH
Q 011930 97 VGGVGGGGIFVPMLTL 112 (474)
Q Consensus 97 v~GiGGG~i~vP~L~l 112 (474)
++++|++...+|++..
T Consensus 22 ~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 22 VGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3477889999999876
No 44
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=21.50 E-value=32 Score=23.30 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCC
Q 011930 463 EYMGFENLCQIS 474 (474)
Q Consensus 463 ~~~~~~~~c~~~ 474 (474)
--+.|.|+|.|.
T Consensus 19 lidnfsnfc~yn 30 (37)
T PF08199_consen 19 LIDNFSNFCHYN 30 (37)
T ss_pred hhhccccceeee
Confidence 446788899873
No 45
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.17 E-value=8.1e+02 Score=24.20 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=34.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011930 362 LELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 423 (474)
Q Consensus 362 l~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l~ 423 (474)
..+|.|++...... ---.++-.+.-.--..|-++--.+...+..+++|+.+|..+.+.+.
T Consensus 113 k~~g~~~~~~~Sl~--PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 113 KLFGLSPELILSLL--PKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHhCCCHHHHHHhc--ccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788877654311 1111111122222233555555567777888999999999988774
No 46
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.99 E-value=6.5e+02 Score=31.22 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhccHH
Q 011930 161 FQPMLMLGISIGVAFNVMFADW 182 (474)
Q Consensus 161 l~~~~ilG~~lGa~l~~~lp~~ 182 (474)
+..|+++|..++..+...+...
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~v 161 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHSS 161 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhHH
Confidence 3578999999888888777653
No 47
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=20.57 E-value=2.1e+02 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.5
Q ss_pred hchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHH
Q 011930 104 GIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNL 141 (474)
Q Consensus 104 ~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~ 141 (474)
.+.+|++..++|.+..++-+.+........+-+..+|+
T Consensus 19 ~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~ 56 (67)
T PF05232_consen 19 LISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNW 56 (67)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999998888777777766666655
No 48
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=20.53 E-value=3.1e+02 Score=22.19 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011930 161 FQPMLMLGISIGVAFNV 177 (474)
Q Consensus 161 l~~~~ilG~~lGa~l~~ 177 (474)
++...+-|+-.|+++..
T Consensus 34 il~~vLaGTaaGafl~e 50 (75)
T PF05052_consen 34 ILAPVLAGTAAGAFLGE 50 (75)
T ss_pred HHHHHHccchHHHHHHH
Confidence 33445555566655554
No 49
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.14 E-value=4e+02 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccH
Q 011930 159 LLFQPMLMLGISIGVAFNVMFAD 181 (474)
Q Consensus 159 l~l~~~~ilG~~lGa~l~~~lp~ 181 (474)
+.+.++.++|..+|.++-.+++.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 33566778888888888888864
Done!