Query 011930
Match_columns 474
No_of_seqs 219 out of 2168
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 14.7 4.9E+02 0.017 25.8 8.3 32 391-422 122-153 (340)
2 2zjs_E Preprotein translocase 14.0 2E+02 0.0069 20.8 4.0 37 58-94 4-45 (60)
3 3iyz_A Aquaporin-4; water tran 13.6 7E+02 0.024 24.6 9.1 26 153-178 127-152 (340)
4 2zz9_A Aquaporin-4; water tran 11.2 5.5E+02 0.019 24.8 7.4 33 390-422 82-114 (301)
5 3dl8_C SECE; RECA-type ATPase 10.9 1.6E+02 0.0054 21.8 2.6 18 59-76 4-21 (65)
6 3llq_A Aquaporin Z 2; aquapori 10.4 3.4E+02 0.011 25.7 5.5 32 391-422 99-130 (256)
7 3c02_A Aquaglyceroporin; membr 10.4 4.2E+02 0.014 24.8 6.1 34 389-422 76-109 (258)
8 2o9g_A Aquaporin Z; integral m 10.3 3.6E+02 0.012 25.0 5.5 33 390-422 73-105 (234)
9 3gd8_A Aquaporin-4; proton exc 10.0 3.7E+02 0.013 24.6 5.5 31 391-421 74-104 (223)
10 3d9s_A Aquaporin-5, AQP-5; aqu 10.0 8.5E+02 0.029 22.9 8.2 66 77-179 44-109 (266)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=14.74 E-value=4.9e+02 Score=25.76 Aligned_cols=32 Identities=9% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 391 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 391 ~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
+..|+++|.-.+..++.-++|+++|+.+++.+
T Consensus 122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44588888888888888888888888776543
No 2
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=13.97 E-value=2e+02 Score=20.80 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=15.4
Q ss_pred HHHHHHhccCCCCccccCc-----hhHHHHHHHHHHHHHHHH
Q 011930 58 RVAHFLWQSGESSYEPVWP-----FGWKVVVGSIVGFFGAAL 94 (474)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~p-----~~~~~i~g~iiG~lag~l 94 (474)
+..+|+-....+-.+..|| .....++...+.+++.++
T Consensus 4 ~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~ 45 (60)
T 2zjs_E 4 RLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVIL 45 (60)
T ss_dssp --------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554444555688899 333344444444444444
No 3
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.59 E-value=7e+02 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFNVM 178 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~~~ 178 (474)
++|..+.+..++-++|+++|+.+...
T Consensus 127 ~~~~~~~~YiiAQ~lGA~~GA~lv~~ 152 (340)
T 3iyz_A 127 ISIAKSVFYITAQCLGAIIGAGILYL 152 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999876543
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=11.18 E-value=5.5e+02 Score=24.82 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 390 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 390 ~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
.+..|+++|.-....++.-++|+++|+.+++-+
T Consensus 82 ~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 114 (301)
T 2zz9_A 82 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 114 (301)
T ss_dssp HHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355688999888888899999999998887643
No 5
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=10.88 E-value=1.6e+02 Score=21.85 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCccccCc
Q 011930 59 VAHFLWQSGESSYEPVWP 76 (474)
Q Consensus 59 ~~~~~~~~~~~~~~~~~p 76 (474)
..+|+-....+-.+..||
T Consensus 4 ~~~f~~~v~~ElkKV~WP 21 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWP 21 (65)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHhcccCc
Confidence 344444434445677888
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=10.43 E-value=3.4e+02 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 391 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 391 ~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
...|+++|......++.-++|+++|+.+++-+
T Consensus 99 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 99 TVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999999999887643
No 7
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=10.37 E-value=4.2e+02 Score=24.83 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=28.4
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 389 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 389 ~~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
..+..|+++|.-.....+.-++|+++|+.+++-+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 109 (258)
T 3c02_A 76 GLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999887654
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=10.30 E-value=3.6e+02 Score=24.95 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=26.7
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 390 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 390 ~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
.+..|+++|.......+.-++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 73 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688999988888999999999998877643
No 9
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.03 E-value=3.7e+02 Score=24.63 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=26.1
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011930 391 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRK 421 (474)
Q Consensus 391 ~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~ 421 (474)
...|+++|.......+.-++|+++|+.+++-
T Consensus 74 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~ 104 (223)
T 3gd8_A 74 VCTRKISIAKSVFYIAAQCLGAIIGAGILYL 104 (223)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999888764
No 10
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=9.97 E-value=8.5e+02 Score=22.86 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHH
Q 011930 77 FGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYD 156 (474)
Q Consensus 77 ~~~~~i~g~iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~ 156 (474)
....+..|+.+.+..-.++.++| -+++|....+. ...++ ++|+
T Consensus 44 l~ial~~Glav~~~i~~~g~iSG--------------aHlNPAVTla~----------------~~~g~-------~~~~ 86 (266)
T 3d9s_A 44 LQIALAFGLAIGTLAQALGPVSG--------------GHINPAITLAL----------------LVGNQ-------ISLL 86 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------CCCCHHHHHHH----------------HHTSS-------SCHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCc--------------ceECHHHHHHH----------------HHhcC-------CCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 011930 157 LALLFQPMLMLGISIGVAFNVMF 179 (474)
Q Consensus 157 l~l~l~~~~ilG~~lGa~l~~~l 179 (474)
.+....++-++|+++|+.+...+
T Consensus 87 ~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 87 RAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!