Query 011930
Match_columns 474
No_of_seqs 219 out of 2168
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 18:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 43.7 1E+02 0.0076 27.1 20.7 53 78-135 23-75 (447)
2 d1j4na_ f.19.1.1 (A:) Aquapori 36.9 1.2E+02 0.0089 25.9 13.9 24 153-176 91-114 (249)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 16.2 3.2E+02 0.023 23.5 12.2 44 365-408 85-128 (447)
4 d1ymga1 f.19.1.1 (A:6-239) Aqu 12.3 1.3E+02 0.0095 25.5 5.5 34 390-423 70-103 (234)
5 d1ymga1 f.19.1.1 (A:6-239) Aqu 10.7 4.2E+02 0.03 21.9 8.6 24 153-176 76-99 (234)
6 d1fx8a_ f.19.1.1 (A:) Glycerol 9.1 2.7E+02 0.019 23.6 6.5 34 389-422 69-102 (254)
7 d2yvxa3 f.57.1.1 (A:276-448) M 9.0 1.6E+02 0.012 24.1 4.6 46 340-392 120-166 (173)
8 d1rc2a_ f.19.1.1 (A:) Aquapori 7.5 1.9E+02 0.014 24.1 4.6 33 391-423 71-103 (231)
9 d1j4na_ f.19.1.1 (A:) Aquapori 7.0 2.7E+02 0.02 23.4 5.5 34 390-423 85-118 (249)
10 d1q90r_ f.23.12.1 (R:) ISP sub 6.2 1.8E+02 0.013 18.1 2.5 24 327-350 7-30 (39)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.71 E-value=1e+02 Score=27.10 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHH
Q 011930 78 GWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGS 135 (474)
Q Consensus 78 ~~~~i~g~iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~ 135 (474)
.|.+.....++.+...+... . -+ +..|.+.- .|++..+.--...+..++..+.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~-~--~~-~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~ 75 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRK-N--FA-LAMPYLVE-QGFSRGDLGFALSGISIAYGFS 75 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-S--HH-HHHHHTTS-STTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-H--HH-HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHH
Confidence 45555555555444333110 1 12 45677665 6787766654444443333333
No 2
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.87 E-value=1.2e+02 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFN 176 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~ 176 (474)
++|+...+....-++|+.+|+.+.
T Consensus 91 i~~~~~~~Yi~aQ~lGa~~g~~~~ 114 (249)
T d1j4na_ 91 ISVLRAIMYIIAQCVGAIVATAIL 114 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeeeeeHHHHHHHHHHhhh
Confidence 899999999999999999996554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.23 E-value=3.2e+02 Score=23.52 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q 011930 365 GIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVA 408 (474)
Q Consensus 365 gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~ga 408 (474)
+..++.....+.+......+...........+.+-....++.+.
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence 45566655555554444444333323333344444444343333
No 4
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.32 E-value=1.3e+02 Score=25.54 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011930 390 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 423 (474)
Q Consensus 390 ~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l~ 423 (474)
++..|+++|.......+.-++|+.+|+.+.+.+.
T Consensus 70 ~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 70 FLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCCChhheeeeeehHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999998876543
No 5
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.72 E-value=4.2e+02 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 011930 153 IDYDLALLFQPMLMLGISIGVAFN 176 (474)
Q Consensus 153 id~~l~l~l~~~~ilG~~lGa~l~ 176 (474)
++|+.+.+..++-++|+.+|+.+.
T Consensus 76 i~~~~~~~Yi~aQ~lGa~~ga~l~ 99 (234)
T d1ymga1 76 MSLLRAICYMVAQLLGAVAGAAVL 99 (234)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheeeeeehHHHHHHHHHHHH
Confidence 999999999999999999997654
No 6
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=9.05 E-value=2.7e+02 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011930 389 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 422 (474)
Q Consensus 389 ~~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l 422 (474)
..+..|+++|.......+.-++|+.+|+.+.+-+
T Consensus 69 a~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 69 ALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999887543
No 7
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.99 E-value=1.6e+02 Score=24.11 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 011930 340 IVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYL 392 (474)
Q Consensus 340 ~laG~vsGllGiGGG~ilvP~Ll-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~ 392 (474)
+..-.++++.| ...|+++ .+|.||..++ +-+..+.....+...|+.
T Consensus 120 ~~~~~ia~~~G-----~~lPlll~klg~DPA~aS--~P~itti~Di~g~~iyf~ 166 (173)
T d2yvxa3 120 VLIVFFANLVG-----AMLPFLLRRLGVDPALVS--NPLVATLSDVTGLLIYLS 166 (173)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHTSCCGGGSC--STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhCCChhhhh--hhHHHHHHHHHHHHHHHH
Confidence 34445566666 4678886 7899997764 556677788888887764
No 8
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=7.46 E-value=1.9e+02 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011930 391 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 423 (474)
Q Consensus 391 ~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l~ 423 (474)
+..|+++|.......+.-++|+.+|+.+.+-+.
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999998887654
No 9
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.00 E-value=2.7e+02 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=28.2
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011930 390 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 423 (474)
Q Consensus 390 ~~~~G~i~~~~~l~l~~gaiiGa~iG~~l~~~l~ 423 (474)
.+..|++++.......+.-++|+.+|+-+.+.+-
T Consensus 85 ~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 4556899999999999999999999988776553
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.19 E-value=1.8e+02 Score=18.09 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 011930 327 WKIHQIVFYCFCGIVAGMVGGLLG 350 (474)
Q Consensus 327 ~~~~~~~~~~~~G~laG~vsGllG 350 (474)
...+|+.-+.++|.+++-..|+++
T Consensus 7 MgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccchhhhhhcc
Confidence 344566667778888888877766
Done!