BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011931
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/473 (53%), Positives = 327/473 (69%), Gaps = 22/473 (4%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G E FV
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIEEFV 62
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
N+++KPR I+++VKAGAP D TI+ L ++EKGD +IDGGN ++++T+RR K +AELG+
Sbjct: 63 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 122
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+ G+G++
Sbjct: 123 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDGAGHY 181
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK V + EL VF +WNKGEL S+LIEITA
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTK 241
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
LVD +LDK G KGTGKWT Q A DL V P I +ERV+A+
Sbjct: 242 IDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKAS 301
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G V+ + D+ I+ VR+ALY SKICSYAQG ++A S E W+L+ G++
Sbjct: 302 KVL--AGPAVKPFEG-DRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYGDI 358
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 414
A I++GGCIIRA FL +IK+AYDR+ L+NLL+D F K+IV+R Q A R +V A G
Sbjct: 359 AMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAMRG 417
Query: 415 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
I PG +S+LAY+DSYR LPANL+QAQRDYFGAHTYER+D EG FHTEW K
Sbjct: 418 IPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/473 (53%), Positives = 327/473 (69%), Gaps = 22/473 (4%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G E FV
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIEEFV 63
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
N+++KPR I+++VKAGAP D TI+ L ++EKGD +IDGGN ++++T+RR K +AELG+
Sbjct: 64 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 123
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+ G+G++
Sbjct: 124 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDGAGHY 182
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK V + EL VF +WNKGEL S+LIEITA
Sbjct: 183 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTK 242
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
LVD +LDK G KGTGKWT Q A DL V P I +ERV+A+
Sbjct: 243 IDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKAS 302
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G V+ + D+ I+ VR+ALY SKICSYAQG ++A S E W+L+ G++
Sbjct: 303 KVL--AGPAVKPFEG-DRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYGDI 359
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 414
A I++GGCIIRA FL +IK+AYDR+ L+NLL+D F K+IV+R Q A R +V A G
Sbjct: 360 AMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAMRG 418
Query: 415 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
I PG +S+LAY+DSYR LPANL+QAQRDYFGAHTYER+D EG FHTEW K
Sbjct: 419 IPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/471 (50%), Positives = 310/471 (65%), Gaps = 21/471 (4%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADL---------SVAAPTI----EERVEAA 295
YLVD +LD+ KGTGKWT Q A DL SV A I ++RV A+
Sbjct: 253 KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI 368
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+I++ GCIIRA FL +I AY N +ANLL+ P F + D Q A R VV A+ GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGI 428
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 429 PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/471 (50%), Positives = 310/471 (65%), Gaps = 21/471 (4%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADL---------SVAAPTI----EERVEAA 295
YLVD +LD+ KGTGKWT Q A DL SV A I ++RV A+
Sbjct: 253 KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI 368
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+I++ GCIIRA FL +I A N +ANLL+ P F + D Q A R VV A+ +GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI 428
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 429 PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/472 (49%), Positives = 313/472 (66%), Gaps = 21/472 (4%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +SV+NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEG GPS+MPGG EAY+ + IL ++AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK L+NEEL FTEWN+GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADL---------SVAAPTI----EERVEAA 295
YLVD +LD+ KGTGKWT Q + DL SV A I ++RV A+
Sbjct: 253 KKDEEGKYLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEI 368
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+I++ GCIIRA FL +I AY +NA +ANLL+ P F + D Q A R VV A+ +GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI 428
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+R D EG FHTEW +
Sbjct: 429 PVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE 480
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 312/471 (66%), Gaps = 21/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 6 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 63 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 123 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 242
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
Y+VDK+LDK G KGTGKWT + A DL V P I +ERV+A+
Sbjct: 243 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 302
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 303 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 358
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 359 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 418
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 419 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 469
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 312/471 (66%), Gaps = 21/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 7 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 63
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 64 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 123
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 124 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 243
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
Y+VDK+LDK G KGTGKWT + A DL V P I +ERV+A+
Sbjct: 244 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 303
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 304 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 359
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 360 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 419
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 420 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 470
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 312/471 (66%), Gaps = 21/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 8 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 64
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 65 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 124
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 125 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 244
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
Y+VDK+LDK G KGTGKWT + A DL V P I +ERV+A+
Sbjct: 245 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 304
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 305 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 360
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 361 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 420
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 421 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 471
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/477 (46%), Positives = 300/477 (62%), Gaps = 27/477 (5%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
GL GLAVMGQNL LN A+ GF + YNRT SKVD + K + G E F++
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSI--IGATSIEDFIS 70
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++PR +++LVKAGAPVD I + +EKGD IIDGGN + ++ RR + + + G+L+
Sbjct: 71 KLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGGS EA+ +I++I ++A+ D PC +V G+G++V
Sbjct: 131 VGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAK-SDGEPCCEWVGPAGAGHYV 189
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAYD++K +G T++E+ +VF +WN G L SFL+EIT
Sbjct: 190 KMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFD 249
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
LV+K++D G KGTGKWT A DL + I ER+ A+K
Sbjct: 250 DVDGKP-LVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASK 308
Query: 297 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
V G V + D+++ +DD+ QALYASKI SYAQG LIR + GW L +A
Sbjct: 309 VLP--GPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIA 366
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 416
+W+GGCIIR+VFL +I KAY DL NLL + FA + QS WR+ + LA GI
Sbjct: 367 LMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGIP 426
Query: 417 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTY--------ERIDMEGSFHTEW 465
TP S++L+++D YR ERLPANL+QAQRDYFGAHT+ + + ++ H W
Sbjct: 427 TPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINW 483
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/471 (47%), Positives = 299/471 (63%), Gaps = 22/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G E V+
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEEMVS 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+L+
Sbjct: 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 123 VGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFV 182
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA
Sbjct: 183 KMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA-SILKF 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
+L+ K+ D G KGTGKWT A + V I +ER++A+K
Sbjct: 242 QDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 301
Query: 297 VFKSGGFGVQSNQ-AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
K G Q+ DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 302 KLK----GPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 357
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR + + +GI
Sbjct: 358 ALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGI 417
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 465
P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 418 PMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/471 (47%), Positives = 301/471 (63%), Gaps = 22/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G + + V+
Sbjct: 7 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVS 64
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD+ I+ L ++ GD IIDGGN Y +T RR + + G+L+
Sbjct: 65 KLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILF 124
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 125 VGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFV 184
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V + +E+ F +WNK EL SFLIEITA
Sbjct: 185 KMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA-NILKF 243
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
+L+ K+ D G KGTGKWT A + V I +ER++A+K
Sbjct: 244 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 303
Query: 297 VFKSGGFGVQSNQAV-DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
K G Q Q DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 304 KLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 359
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A +W+GGCIIR+VFL +IK A+DRN +L NLL+D F + + Q +WRR V + +GI
Sbjct: 360 ALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGI 419
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 465
P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 420 PMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 470
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/471 (47%), Positives = 301/471 (63%), Gaps = 22/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G + + V+
Sbjct: 28 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVS 85
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD+ I+ L ++ GD IIDGGN Y +T RR + + G+L+
Sbjct: 86 KLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILF 145
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 146 VGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFV 205
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V + +E+ F +WNK EL SFLIEITA
Sbjct: 206 KMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA-NILKF 264
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
+L+ K+ D G KGTGKWT A + V I +ER++A+K
Sbjct: 265 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 324
Query: 297 VFKSGGFGVQSNQAV-DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
K G Q Q DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 325 KLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 380
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 415
A +W+GGCIIR+VFL +IK A+DRN +L NLL+D F + + Q +WRR V + +GI
Sbjct: 381 ALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGI 440
Query: 416 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 465
P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 441 PMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 491
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 252/471 (53%), Gaps = 37/471 (7%)
Query: 21 NLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76
NLALNIAEKGF ++V+NRT SK +E + K P G F E+F S++KPR
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFM---KANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136
++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL +LGMG+SG
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 137 GEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI 196
GEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GG+G+ VKM HN
Sbjct: 132 GEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSG 191
Query: 197 EYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEITAXXXXXXXXXXXX 255
EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 192 EYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS-IAAARAKDKDGS 249
Query: 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERV-----------------EAAKVF 298
YL + V+D+ G KGTG W+ Q+A ++ V AP++ V A +
Sbjct: 250 YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 309
Query: 299 KSGGFGV--QSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
+S G+ + +S + ++L D V A+ I YAQ +R + L L
Sbjct: 310 QSPGYTLKNKSPSGPEIKQLYDSVCIAI----ISCYAQMFQCLREMDKVHNFGLNLPATI 365
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS-GI 415
++ GCI++ L + +A+++N +++NL+ F EI +R +V L + +
Sbjct: 366 ATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMVALITSKLEV 423
Query: 416 STPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
S P +S+SL Y + L LV QRD FG H YER+D +G +W
Sbjct: 424 SIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 474
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 44/277 (15%)
Query: 46 TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCII 105
V+ ++EG + G R E F + KPRV+ + V A A VD ++ + + D +I
Sbjct: 57 AVQALEREG---IAGARSIEEFCAKLVKPRVVWLXVPA-AVVDSXLQRXTPLLAANDIVI 112
Query: 106 DGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIL-- 163
DGGN Y++ RR G+ Y+ +G SGG G G L GG +A + ++ +
Sbjct: 113 DGGNSHYQDDIRRADQXRAQGITYVDVGTSGGIFGLERGYCLXIGGEKQAVERLDPVFRT 172
Query: 164 ----LKVAAQVP-----DSGPCVTYVSKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212
+ A + P + + Y+ G G+G+FVK +HNGIEYG AE ++L
Sbjct: 173 LAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILH 232
Query: 213 --SVGK-----------LTNE-------ELQNVFTEWNKGELL-SFLIEITAXXXXXXXX 251
+ GK L N +L ++ W +G ++ S+L++++A
Sbjct: 233 HANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD 292
Query: 252 XXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
+ + + G G+WTV A D V A +
Sbjct: 293 ------LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVL 323
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 330 CSYAQGMNLIRAKSIEK------------------GWDLKLGELARIWKGGCIIRAVFLD 371
+YA+G+N++ + K +DL L ++ +W+ G +I + LD
Sbjct: 222 AAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLD 281
Query: 372 RIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 431
A + DL EF + D R V AI+ G+ +SS+L S R
Sbjct: 282 LSATALLDSPDLQ------EFQGRVSDSGEG-RWTVAAAIDEGVPAHVLSSALYERFSSR 334
Query: 432 RERLPAN-LVQAQRDYFGAH 450
E AN L+ A R FG H
Sbjct: 335 GEDDFANRLLSAXRYEFGGH 354
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP 57
G + +G GL +MG+ +++N+ + GF ++V+NRT SK DE VE + P
Sbjct: 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESP 71
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 33/240 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG GL +MG + N+ + G ++V+NRT K D ++ + G P +
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ P+ LV + V + I+ G C +D + + + G
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIR-------PGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 129 YLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK----- 182
+L VSG ++ + G ++ G Y+ D C + K
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYE--------------DCSSCFQAMGKTSFFL 190
Query: 183 GGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
G GN KM I N ++ M IAE ++ ++T + Q + N+G+L S ++
Sbjct: 191 GEVGNAAKMMLIVNMVQGSFMATIAEGL----TLAQVTGQSQQTLLDILNQGQLASIFLD 246
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 36/229 (15%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYN----------RTTSKVDETVERAKKEGDLPL 58
+IG GL MG+ +A+N+ ++G + ++ ++ E ++ D+
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 59 FGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR 118
+ + P ++ KAG I+D + +T +
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGT-----------------VIVDMSSVSPSSTLKM 108
Query: 119 EKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCV 177
K AE G+ Y+ VSGG +GA G ++M G S ++ I+ +L + G +
Sbjct: 109 AKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI-------GKDI 161
Query: 178 TYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226
+V G+G+ VK+++N + +M +AEA VL L E +Q +
Sbjct: 162 YHVGDTGAGDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEII 209
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 45/221 (20%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP- 64
Q +G GL MG +A N+ + G+P+ +Y + A KE F+D
Sbjct: 21 QSMPVGFIGLGNMGNPMAKNLMKHGYPLIIY--------DVFPDACKE-------FQDAG 65
Query: 65 ESFVNSI-----QKPRVIIMLVKAGAPVDETIKTLSAY---------MEKGDCIIDGGNE 110
E V+S + R+I ML +I + AY ++KG +ID
Sbjct: 66 EQVVSSPADVAEKADRIITML-------PTSINAIEAYSGANGILKKVKKGSLLIDSSTI 118
Query: 111 WYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQ 169
++ K + ++G +++ VSGG AR G + M GG + + +++L + +
Sbjct: 119 DPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN 178
Query: 170 VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210
V Y G+G K+ +N + M AEA ++
Sbjct: 179 -------VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 212
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 45/217 (20%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP-ESFV 68
+G GL MG +A N+ + G+P+ +Y + A KE F+D E V
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIY--------DVFPDACKE-------FQDAGEQVV 47
Query: 69 NSI-----QKPRVIIMLVKAGAPVDETIKTLSAY---------MEKGDCIIDGGNEWYEN 114
+S + R+I ML +I + AY ++KG +ID
Sbjct: 48 SSPADVAEKADRIITML-------PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAV 100
Query: 115 TERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDS 173
++ K + ++G +++ VSGG AR G + M GG + + +++L + +
Sbjct: 101 SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN---- 156
Query: 174 GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210
V Y G+G K+ +N + M AEA ++
Sbjct: 157 ---VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 190
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 19/201 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+I G G A + E G+ + V+NRT ++ L G E
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARA----------ASLAALGATIHEQAR 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
+ + +++ ++ GA V + + + ++A + G +D + + LG
Sbjct: 83 AAARDADIVVSXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGALG 142
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+ +L VSGG GA G ++ G A LLKV + T+V GSG
Sbjct: 143 IAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-------ATHVGPHGSG 195
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
K+ + I + +AEA
Sbjct: 196 QLTKLANQXIVGITIGAVAEA 216
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL + G A+N+A G + V T V + +L G + E+
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVAD---------ELLSLGAVNVETAR 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I + V V++ + + +G I+D + T+R + + E
Sbjct: 54 QVTEFADIIFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEX 113
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G YL VSGGE GAR G S+ GG F+ K + DIL G +T V
Sbjct: 114 GADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDIL----------GKNITLVG 163
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEA 207
G G K+ + I +++ ++EA
Sbjct: 164 GNGDGQTCKVANQIIVALNIEAVSEA 189
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP 57
+T G GL +MG +A N+ GF ++V+NR +K V ++ P
Sbjct: 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSP 51
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE 45
+ G GL +MG +A N+ + G ++++NR+ K +E
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEE 39
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 23 ALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82
AL + FP + T+ D+T ++ + L G DP ++S +P + ML++
Sbjct: 164 ALGQLRQRFPTLPFMALTATADDTT----RQDIVRLLGLNDPLIQISSFDRPNIRYMLME 219
Query: 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR 118
P+D+ ++ + K I E+T R
Sbjct: 220 KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima - P2 Form
Length = 415
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 34 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 93
Query: 57 PLFGF 61
+FGF
Sbjct: 94 KIFGF 98
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 413
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 32 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 91
Query: 57 PLFGF 61
+FGF
Sbjct: 92 KIFGF 96
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 414
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 92
Query: 57 PLFGF 61
+FGF
Sbjct: 93 KIFGF 97
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 149
Query: 57 PLFGF 61
+FGF
Sbjct: 150 KIFGF 154
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
Length = 283
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49
+T + + G V+G +A A GF ++ Y+ T +D +R
Sbjct: 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR 46
>pdb|2DRV|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2DRV|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2IT2|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT2|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
Length = 200
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 273 WTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQA 323
W + ++ L V A T+E+ V+ + S GF + +++ +KLI ++R
Sbjct: 100 WFLVRSPILHVGAKTLEDAVKLVNLAVSCGFKYSNIKSISNKKLIVEIRST 150
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 176 CVTYVSKGG----SGNFVKMIHNGIEY-GDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN 230
++Y+ G + N K + + I+Y GD L+++ ++ + +L ++E N +EW
Sbjct: 787 VLSYIESGQFSPENPNEFKPLVDSIKYHGDYYLVSDDFESYLATHELVDQEFHNQRSEWL 846
Query: 231 KGELLSF 237
K +LS
Sbjct: 847 KKSVLSL 853
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 196 IEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG 232
+E GD++ + E VL +VG +T E + WN+
Sbjct: 13 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEA 49
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 196 IEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK 231
+E GD++ + E VL +VG +T E + WN+
Sbjct: 14 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNE 49
>pdb|1K77|A Chain A, Crystal Structure Of Ec1530, A Putative Oxygenase From
Escherichia Coli
Length = 260
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 366 RAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA 425
RAVF+D I+ A DR A ++ + + + LAI ++ + L
Sbjct: 119 RAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQL- 177
Query: 426 YFDSYRRERLPANLVQAQRDYFGAHTYERI 455
D++ +++ NL RDY G + + +I
Sbjct: 178 --DTFHAQKVDGNLTHLIRDYAGKYAHVQI 205
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 197 EYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG 232
E GD++ + E VL +VG +T E + WN+
Sbjct: 13 EEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEA 48
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 23 ALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82
AL + FP + T+ D+T ++ + L G DP ++S +P + L +
Sbjct: 164 ALGQLRQRFPTLPFXALTATADDTT----RQDIVRLLGLNDPLIQISSFDRPNIRYXLXE 219
Query: 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR 118
P+D+ + + K I E+T R
Sbjct: 220 KFKPLDQLXRYVQEQRGKSGIIYCNSRAKVEDTAAR 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,866,492
Number of Sequences: 62578
Number of extensions: 579394
Number of successful extensions: 1480
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 43
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)