Query 011931
Match_columns 474
No_of_seqs 420 out of 3724
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 4E-124 8E-129 903.6 44.7 456 7-469 3-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 2E-116 4E-121 836.2 40.6 463 7-474 6-482 (487)
3 PTZ00142 6-phosphogluconate de 100.0 4E-110 9E-115 864.5 49.2 456 7-466 1-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 2E-109 3E-114 860.1 51.6 468 4-473 3-486 (493)
5 PRK09287 6-phosphogluconate de 100.0 1E-108 3E-113 849.8 48.0 442 18-467 1-457 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 2E-107 4E-112 845.1 49.4 450 9-466 1-466 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 3E-81 6.5E-86 599.3 26.7 278 186-466 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 2.2E-61 4.8E-66 438.7 26.5 298 8-455 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.2E-55 4.8E-60 435.6 35.0 296 8-455 1-298 (298)
10 PRK09599 6-phosphogluconate de 100.0 9.9E-48 2.2E-52 381.7 35.4 299 8-455 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.7E-46 3.7E-51 361.7 29.6 255 8-290 1-260 (286)
12 PRK12490 6-phosphogluconate de 100.0 4.5E-45 9.8E-50 362.2 35.3 297 8-454 1-298 (299)
13 KOG0409 Predicted dehydrogenas 100.0 2.2E-42 4.8E-47 326.1 26.8 261 6-294 34-299 (327)
14 PRK15059 tartronate semialdehy 100.0 4.7E-40 1E-44 324.4 27.1 252 8-288 1-256 (292)
15 PRK15461 NADH-dependent gamma- 100.0 8.2E-39 1.8E-43 316.8 28.8 254 7-288 1-259 (296)
16 PLN02858 fructose-bisphosphate 100.0 5.6E-38 1.2E-42 360.5 39.2 254 7-288 4-264 (1378)
17 TIGR01692 HIBADH 3-hydroxyisob 100.0 9.8E-38 2.1E-42 308.2 26.9 249 12-288 1-260 (288)
18 PRK11559 garR tartronate semia 100.0 3.2E-36 7E-41 298.8 27.8 254 7-288 2-259 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 6.3E-36 1.4E-40 296.0 28.0 253 9-289 1-257 (291)
20 PLN02858 fructose-bisphosphate 100.0 4.8E-35 1E-39 336.4 28.3 256 5-288 322-584 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 1.7E-31 3.6E-36 241.7 12.6 154 7-170 1-157 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 2.7E-28 5.8E-33 252.6 24.3 250 8-291 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 1.2E-24 2.7E-29 224.7 24.0 206 7-226 3-247 (415)
24 PRK15182 Vi polysaccharide bio 99.9 7.3E-24 1.6E-28 218.9 23.1 208 4-226 3-243 (425)
25 PRK15057 UDP-glucose 6-dehydro 99.9 1.3E-23 2.8E-28 214.6 22.0 200 8-226 1-232 (388)
26 PRK14618 NAD(P)H-dependent gly 99.9 3.1E-24 6.7E-29 216.0 12.6 269 7-290 4-302 (328)
27 PRK00094 gpsA NAD(P)H-dependen 99.9 1.8E-23 3.9E-28 210.1 15.3 263 7-291 1-305 (325)
28 PF00393 6PGD: 6-phosphoglucon 99.9 7.8E-24 1.7E-28 203.6 8.3 116 314-434 1-118 (291)
29 PRK06129 3-hydroxyacyl-CoA deh 99.9 9.6E-22 2.1E-26 196.1 21.5 248 7-289 2-270 (308)
30 PRK14619 NAD(P)H-dependent gly 99.9 1.7E-21 3.7E-26 194.3 13.7 241 6-290 3-280 (308)
31 COG0362 Gnd 6-phosphogluconate 99.9 3.9E-22 8.5E-27 194.6 5.4 121 310-435 175-298 (473)
32 COG0677 WecC UDP-N-acetyl-D-ma 99.8 1.3E-19 2.9E-24 177.9 21.2 205 8-226 10-250 (436)
33 PRK12557 H(2)-dependent methyl 99.8 2E-19 4.3E-24 180.5 22.8 197 8-226 1-236 (342)
34 COG1004 Ugd Predicted UDP-gluc 99.8 3.3E-18 7.3E-23 169.0 25.7 250 8-288 1-284 (414)
35 KOG2653 6-phosphogluconate deh 99.8 8.2E-21 1.8E-25 182.4 6.4 121 310-435 179-301 (487)
36 PLN02353 probable UDP-glucose 99.8 3.2E-18 6.9E-23 178.5 24.7 210 7-226 1-251 (473)
37 PLN02688 pyrroline-5-carboxyla 99.8 3.8E-18 8.3E-23 166.7 21.9 186 8-227 1-202 (266)
38 PRK07531 bifunctional 3-hydrox 99.8 1.4E-18 3.1E-23 183.6 19.5 194 7-227 4-218 (495)
39 PRK07679 pyrroline-5-carboxyla 99.8 2.4E-18 5.2E-23 169.3 18.3 194 6-228 2-208 (279)
40 PRK09260 3-hydroxybutyryl-CoA 99.8 6E-18 1.3E-22 167.2 18.8 192 8-226 2-217 (288)
41 PRK08229 2-dehydropantoate 2-r 99.8 1.4E-17 3.1E-22 168.5 21.1 198 6-222 1-236 (341)
42 PRK08268 3-hydroxy-acyl-CoA de 99.8 2.5E-17 5.4E-22 174.1 20.0 195 1-227 1-223 (507)
43 COG0240 GpsA Glycerol-3-phosph 99.8 4.5E-18 9.7E-23 166.1 13.0 275 7-291 1-304 (329)
44 PRK07417 arogenate dehydrogena 99.8 1.5E-17 3.2E-22 163.7 16.1 177 8-205 1-190 (279)
45 PRK08507 prephenate dehydrogen 99.7 1.3E-16 2.9E-21 156.6 20.3 190 8-225 1-205 (275)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 5.1E-17 1.1E-21 171.2 17.9 190 6-227 4-221 (503)
47 PRK07819 3-hydroxybutyryl-CoA 99.7 1.5E-16 3.2E-21 156.8 19.9 195 7-226 5-222 (286)
48 PRK07066 3-hydroxybutyryl-CoA 99.7 7.7E-16 1.7E-20 153.0 20.0 197 4-227 4-221 (321)
49 PRK06130 3-hydroxybutyryl-CoA 99.7 1.8E-15 3.9E-20 151.3 21.9 199 7-227 4-217 (311)
50 PRK07530 3-hydroxybutyryl-CoA 99.7 1.2E-15 2.7E-20 151.0 20.1 191 7-226 4-219 (292)
51 PRK12491 pyrroline-5-carboxyla 99.7 1.2E-15 2.6E-20 149.1 18.9 196 7-228 2-206 (272)
52 PRK08655 prephenate dehydrogen 99.7 2.7E-15 5.9E-20 156.0 21.8 194 8-224 1-200 (437)
53 PLN02545 3-hydroxybutyryl-CoA 99.7 1.7E-15 3.6E-20 150.3 18.6 191 7-226 4-219 (295)
54 PRK11199 tyrA bifunctional cho 99.7 1.8E-15 3.8E-20 154.6 19.1 179 6-224 97-279 (374)
55 PRK12439 NAD(P)H-dependent gly 99.7 1.6E-15 3.6E-20 153.2 18.7 279 1-291 1-310 (341)
56 PRK06035 3-hydroxyacyl-CoA deh 99.7 2.5E-15 5.4E-20 148.8 19.3 193 7-226 3-221 (291)
57 PTZ00142 6-phosphogluconate de 99.7 1.6E-16 3.4E-21 165.7 8.7 118 310-435 174-297 (470)
58 PRK07680 late competence prote 99.7 2E-15 4.4E-20 148.1 15.9 188 8-228 1-204 (273)
59 PRK12921 2-dehydropantoate 2-r 99.6 2.2E-14 4.8E-19 142.9 22.8 255 8-291 1-293 (305)
60 PRK08293 3-hydroxybutyryl-CoA 99.6 1.9E-14 4.2E-19 142.1 21.8 196 7-226 3-221 (287)
61 PRK06476 pyrroline-5-carboxyla 99.6 5.9E-14 1.3E-18 136.6 24.0 192 8-228 1-195 (258)
62 PTZ00345 glycerol-3-phosphate 99.6 1.4E-15 3.1E-20 153.5 12.7 274 6-290 10-335 (365)
63 PRK05808 3-hydroxybutyryl-CoA 99.6 1.9E-14 4.1E-19 141.9 20.2 191 7-226 3-218 (282)
64 PRK11880 pyrroline-5-carboxyla 99.6 7.5E-14 1.6E-18 136.5 24.2 195 6-229 1-205 (267)
65 TIGR01724 hmd_rel H2-forming N 99.6 4.1E-14 9E-19 137.2 21.6 194 8-222 1-233 (341)
66 TIGR00873 gnd 6-phosphoglucona 99.6 5E-16 1.1E-20 162.0 8.2 114 310-429 171-286 (467)
67 COG1023 Gnd Predicted 6-phosph 99.6 1.1E-15 2.4E-20 140.4 9.4 188 64-291 77-266 (300)
68 TIGR03376 glycerol3P_DH glycer 99.6 1.8E-15 3.8E-20 151.8 11.8 271 9-291 1-325 (342)
69 PRK06522 2-dehydropantoate 2-r 99.6 4.7E-14 1E-18 140.4 21.8 254 8-290 1-289 (304)
70 PRK09287 6-phosphogluconate de 99.6 8.9E-16 1.9E-20 159.5 8.2 117 310-434 163-285 (459)
71 COG0345 ProC Pyrroline-5-carbo 99.6 2.4E-14 5.2E-19 137.5 17.3 193 7-227 1-202 (266)
72 PRK07502 cyclohexadienyl dehyd 99.6 3.4E-14 7.3E-19 141.8 18.8 165 6-187 5-184 (307)
73 PRK14620 NAD(P)H-dependent gly 99.6 6.9E-14 1.5E-18 140.7 18.2 203 8-223 1-238 (326)
74 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 2.5E-14 5.4E-19 131.7 13.0 121 8-133 1-151 (185)
75 PRK06545 prephenate dehydrogen 99.6 2E-13 4.3E-18 139.0 19.1 195 8-225 1-209 (359)
76 PRK06249 2-dehydropantoate 2-r 99.5 9.1E-13 2E-17 131.8 22.2 255 5-291 3-301 (313)
77 PRK06928 pyrroline-5-carboxyla 99.5 3E-13 6.5E-18 132.9 17.7 196 7-227 1-206 (277)
78 PRK07634 pyrroline-5-carboxyla 99.5 2.1E-13 4.6E-18 131.5 16.3 194 8-228 5-208 (245)
79 PLN02256 arogenate dehydrogena 99.5 2.3E-12 4.9E-17 127.8 21.9 153 5-170 34-199 (304)
80 PRK08269 3-hydroxybutyryl-CoA 99.5 4.8E-13 1E-17 133.3 16.5 177 18-226 1-215 (314)
81 COG0287 TyrA Prephenate dehydr 99.5 1.6E-12 3.6E-17 126.7 19.0 154 6-169 2-165 (279)
82 TIGR01915 npdG NADPH-dependent 99.5 1.1E-12 2.4E-17 124.4 15.9 166 8-187 1-194 (219)
83 PLN02712 arogenate dehydrogena 99.5 5E-12 1.1E-16 137.5 22.1 150 6-169 368-531 (667)
84 COG1250 FadB 3-hydroxyacyl-CoA 99.5 2.3E-12 4.9E-17 126.3 17.5 193 6-227 2-219 (307)
85 PF03807 F420_oxidored: NADP o 99.5 3.8E-13 8.2E-18 110.4 10.2 90 9-109 1-95 (96)
86 PTZ00431 pyrroline carboxylate 99.4 3.3E-12 7.1E-17 124.4 17.1 188 7-228 3-199 (260)
87 PRK05708 2-dehydropantoate 2-r 99.4 3.5E-12 7.6E-17 127.1 16.9 253 7-289 2-287 (305)
88 COG2085 Predicted dinucleotide 99.4 1.7E-12 3.6E-17 119.1 13.1 162 7-187 1-185 (211)
89 PRK05479 ketol-acid reductoiso 99.4 3.2E-11 6.9E-16 119.9 18.9 189 7-222 17-224 (330)
90 PLN02350 phosphogluconate dehy 99.4 2.7E-12 5.8E-17 134.3 11.1 119 310-436 180-304 (493)
91 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.5E-11 3.3E-16 135.5 17.5 192 6-227 334-550 (737)
92 PRK11730 fadB multifunctional 99.4 2.1E-11 4.6E-16 134.3 18.4 191 7-227 313-528 (715)
93 PF02737 3HCDH_N: 3-hydroxyacy 99.4 3.7E-12 8.1E-17 116.9 10.4 150 9-170 1-174 (180)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 3.3E-12 7.3E-17 114.7 9.8 99 9-111 1-106 (157)
95 TIGR02437 FadB fatty oxidation 99.4 2.4E-11 5.2E-16 133.6 18.3 192 6-227 312-528 (714)
96 PRK14806 bifunctional cyclohex 99.4 3.5E-11 7.6E-16 134.0 19.8 154 7-169 3-171 (735)
97 TIGR02440 FadJ fatty oxidation 99.3 3.5E-11 7.6E-16 132.3 19.0 192 6-227 303-520 (699)
98 PLN02712 arogenate dehydrogena 99.3 6.1E-11 1.3E-15 129.2 20.2 152 6-170 51-215 (667)
99 PF10727 Rossmann-like: Rossma 99.3 1.6E-12 3.6E-17 111.6 6.4 111 6-129 9-122 (127)
100 PRK08818 prephenate dehydrogen 99.3 5E-11 1.1E-15 120.6 18.2 137 7-169 4-149 (370)
101 COG1893 ApbA Ketopantoate redu 99.3 1.3E-10 2.8E-15 115.5 20.6 253 8-289 1-290 (307)
102 PF14833 NAD_binding_11: NAD-b 99.3 9.1E-12 2E-16 107.0 10.0 94 184-288 1-95 (122)
103 PRK11154 fadJ multifunctional 99.3 6.6E-11 1.4E-15 130.4 18.9 193 6-227 308-525 (708)
104 TIGR00465 ilvC ketol-acid redu 99.2 2.1E-10 4.6E-15 114.0 16.0 189 8-226 4-214 (314)
105 PRK07574 formate dehydrogenase 99.2 5.3E-10 1.1E-14 113.9 16.2 111 8-128 193-304 (385)
106 PRK12480 D-lactate dehydrogena 99.2 4.5E-10 9.9E-15 112.8 14.0 114 8-135 147-261 (330)
107 PLN03139 formate dehydrogenase 99.2 9.4E-10 2E-14 112.0 16.4 113 8-130 200-313 (386)
108 TIGR00745 apbA_panE 2-dehydrop 99.1 4.3E-09 9.2E-14 104.1 19.5 243 18-290 2-282 (293)
109 PRK13243 glyoxylate reductase; 99.1 1.1E-09 2.3E-14 110.3 12.4 109 8-128 151-260 (333)
110 cd01065 NAD_bind_Shikimate_DH 99.1 7.2E-10 1.6E-14 99.0 9.4 119 6-132 18-138 (155)
111 KOG2304 3-hydroxyacyl-CoA dehy 99.0 1.2E-09 2.6E-14 100.1 10.4 193 7-227 11-233 (298)
112 PF02153 PDH: Prephenate dehyd 99.0 5.7E-09 1.2E-13 101.5 15.8 138 22-170 1-153 (258)
113 PRK06436 glycerate dehydrogena 99.0 1.6E-09 3.4E-14 107.4 11.6 113 8-135 123-236 (303)
114 PF02826 2-Hacid_dh_C: D-isome 99.0 1.4E-09 3.1E-14 99.8 10.2 111 7-128 36-147 (178)
115 PRK15469 ghrA bifunctional gly 99.0 1.6E-09 3.5E-14 107.9 11.4 110 8-129 137-247 (312)
116 PRK08605 D-lactate dehydrogena 99.0 2.5E-09 5.4E-14 107.7 12.9 109 7-128 146-256 (332)
117 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 1E-08 2.2E-13 95.8 15.3 127 8-152 29-157 (200)
118 KOG2666 UDP-glucose/GDP-mannos 99.0 5.4E-08 1.2E-12 93.4 19.3 210 7-226 1-251 (481)
119 PRK13403 ketol-acid reductoiso 98.9 4.2E-09 9.2E-14 103.4 10.6 89 8-108 17-106 (335)
120 KOG2305 3-hydroxyacyl-CoA dehy 98.9 1.8E-08 3.8E-13 92.6 13.2 204 7-237 3-229 (313)
121 PRK13302 putative L-aspartate 98.9 1.6E-08 3.4E-13 98.9 13.2 122 4-137 3-128 (271)
122 TIGR00112 proC pyrroline-5-car 98.9 5.2E-08 1.1E-12 94.0 16.5 172 30-227 9-185 (245)
123 COG4007 Predicted dehydrogenas 98.9 1.7E-07 3.6E-12 87.7 18.5 201 7-224 1-236 (340)
124 PLN02928 oxidoreductase family 98.9 3.2E-08 7E-13 100.1 14.3 115 8-129 160-283 (347)
125 TIGR01327 PGDH D-3-phosphoglyc 98.9 1.5E-08 3.2E-13 108.2 11.8 111 8-129 139-250 (525)
126 KOG2380 Prephenate dehydrogena 98.8 5.8E-08 1.3E-12 94.1 13.9 151 8-170 53-215 (480)
127 COG0111 SerA Phosphoglycerate 98.8 2.2E-08 4.7E-13 100.0 11.2 109 8-127 143-252 (324)
128 PRK13581 D-3-phosphoglycerate 98.8 2.1E-08 4.5E-13 107.1 11.9 108 8-127 141-249 (526)
129 PF07991 IlvN: Acetohydroxy ac 98.8 2.1E-08 4.7E-13 88.5 9.0 90 8-109 5-96 (165)
130 PRK00257 erythronate-4-phospha 98.8 2.6E-08 5.6E-13 101.5 11.0 114 8-136 117-235 (381)
131 PRK08410 2-hydroxyacid dehydro 98.8 5.6E-08 1.2E-12 97.0 13.0 106 8-128 146-252 (311)
132 COG1052 LdhA Lactate dehydroge 98.8 6.2E-08 1.3E-12 96.7 12.8 116 8-135 147-263 (324)
133 TIGR00872 gnd_rel 6-phosphoglu 98.8 4.6E-08 9.9E-13 97.2 11.7 100 186-294 167-268 (298)
134 PRK11790 D-3-phosphoglycerate 98.8 5.3E-08 1.2E-12 100.6 11.8 108 8-129 152-260 (409)
135 PRK15409 bifunctional glyoxyla 98.8 1.6E-07 3.4E-12 94.2 14.8 109 8-128 146-256 (323)
136 PRK06487 glycerate dehydrogena 98.7 1.6E-07 3.4E-12 94.0 14.3 104 8-128 149-253 (317)
137 PRK06932 glycerate dehydrogena 98.7 1.2E-07 2.6E-12 94.7 13.4 105 8-128 148-253 (314)
138 PRK13304 L-aspartate dehydroge 98.7 1.4E-07 3.1E-12 92.0 12.8 114 7-133 1-121 (265)
139 TIGR02853 spore_dpaA dipicolin 98.7 2E-07 4.3E-12 91.9 13.6 111 8-133 152-262 (287)
140 PRK15438 erythronate-4-phospha 98.7 8.6E-08 1.9E-12 97.4 11.0 106 7-127 116-226 (378)
141 KOG3124 Pyrroline-5-carboxylat 98.7 1.5E-07 3.2E-12 88.5 11.5 192 8-226 1-202 (267)
142 PRK06141 ornithine cyclodeamin 98.7 7.2E-08 1.6E-12 96.5 9.4 118 5-132 123-242 (314)
143 PLN02306 hydroxypyruvate reduc 98.6 4.5E-07 9.8E-12 92.8 13.3 126 8-136 166-300 (386)
144 PRK14194 bifunctional 5,10-met 98.6 2E-07 4.4E-12 91.3 8.4 74 8-111 160-234 (301)
145 PF02558 ApbA: Ketopantoate re 98.5 3.1E-07 6.8E-12 81.6 8.5 107 10-122 1-114 (151)
146 PF01408 GFO_IDH_MocA: Oxidore 98.5 2E-06 4.4E-11 73.1 12.6 111 8-129 1-116 (120)
147 KOG0069 Glyoxylate/hydroxypyru 98.5 7.3E-07 1.6E-11 88.3 10.9 107 7-124 162-269 (336)
148 PRK08306 dipicolinate synthase 98.5 9.3E-07 2E-11 87.6 10.8 111 7-132 152-262 (296)
149 TIGR00507 aroE shikimate 5-deh 98.4 9E-07 2E-11 86.7 9.5 117 7-131 117-235 (270)
150 PRK06444 prephenate dehydrogen 98.4 1.9E-05 4E-10 73.4 16.8 108 8-169 1-115 (197)
151 cd05213 NAD_bind_Glutamyl_tRNA 98.4 2.2E-06 4.7E-11 85.7 10.3 96 6-109 177-274 (311)
152 COG1748 LYS9 Saccharopine dehy 98.3 6.8E-06 1.5E-10 83.4 13.6 122 7-137 1-128 (389)
153 PF01488 Shikimate_DH: Shikima 98.3 1.5E-06 3.3E-11 75.9 7.8 98 6-109 11-110 (135)
154 PRK14188 bifunctional 5,10-met 98.3 1.7E-06 3.8E-11 84.9 8.3 73 8-111 159-233 (296)
155 TIGR02371 ala_DH_arch alanine 98.3 3.3E-06 7.1E-11 84.9 10.1 100 5-113 126-227 (325)
156 PRK06223 malate dehydrogenase; 98.3 5.5E-06 1.2E-10 82.7 10.6 100 7-111 2-122 (307)
157 PRK06407 ornithine cyclodeamin 98.1 1.5E-05 3.2E-10 79.3 10.4 119 6-132 116-236 (301)
158 PRK14179 bifunctional 5,10-met 98.1 6.9E-06 1.5E-10 80.0 7.8 74 8-111 159-233 (284)
159 COG0059 IlvC Ketol-acid reduct 98.1 1E-05 2.3E-10 78.0 8.8 87 8-106 19-107 (338)
160 PRK08618 ornithine cyclodeamin 98.1 1.9E-05 4.1E-10 79.5 11.0 118 6-132 126-245 (325)
161 PRK07340 ornithine cyclodeamin 98.1 2.1E-05 4.5E-10 78.4 11.0 116 5-132 123-240 (304)
162 PRK06823 ornithine cyclodeamin 98.1 2.1E-05 4.5E-10 78.6 11.1 118 5-132 126-246 (315)
163 TIGR01763 MalateDH_bact malate 98.1 2.1E-05 4.5E-10 78.4 10.9 99 8-111 2-121 (305)
164 COG1712 Predicted dinucleotide 98.1 4.4E-05 9.6E-10 70.7 11.7 109 8-127 1-112 (255)
165 COG0569 TrkA K+ transport syst 98.1 3.7E-05 7.9E-10 73.2 11.6 99 8-110 1-103 (225)
166 smart00859 Semialdhyde_dh Semi 98.1 1.4E-05 3.1E-10 68.3 7.8 98 9-111 1-102 (122)
167 PF01113 DapB_N: Dihydrodipico 98.1 2.2E-05 4.8E-10 67.5 8.8 114 8-133 1-122 (124)
168 PF00670 AdoHcyase_NAD: S-aden 98.0 2.2E-05 4.8E-10 69.9 8.8 90 9-112 25-114 (162)
169 KOG2711 Glycerol-3-phosphate d 98.0 3.4E-05 7.3E-10 75.6 10.6 101 8-112 22-143 (372)
170 PLN00203 glutamyl-tRNA reducta 98.0 2.5E-05 5.4E-10 82.9 10.5 100 6-109 265-370 (519)
171 PRK05225 ketol-acid reductoiso 98.0 1E-05 2.2E-10 82.8 7.2 87 8-106 37-129 (487)
172 TIGR01921 DAP-DH diaminopimela 98.0 4.3E-05 9.3E-10 75.9 11.5 87 7-109 3-92 (324)
173 PRK09310 aroDE bifunctional 3- 98.0 2.7E-05 5.8E-10 82.3 10.3 106 7-131 332-437 (477)
174 PTZ00075 Adenosylhomocysteinas 98.0 3E-05 6.5E-10 80.6 9.7 89 8-111 255-344 (476)
175 TIGR00936 ahcY adenosylhomocys 98.0 7.3E-05 1.6E-09 76.8 12.0 100 8-122 196-297 (406)
176 COG2423 Predicted ornithine cy 98.0 6E-05 1.3E-09 75.2 11.1 120 6-133 129-250 (330)
177 TIGR02992 ectoine_eutC ectoine 97.9 4.6E-05 9.9E-10 76.7 10.2 99 6-112 128-228 (326)
178 PRK08291 ectoine utilization p 97.9 6E-05 1.3E-09 76.1 10.8 99 6-112 131-231 (330)
179 TIGR01035 hemA glutamyl-tRNA r 97.9 4.3E-05 9.2E-10 79.5 9.9 94 7-108 180-277 (417)
180 PLN02819 lysine-ketoglutarate 97.9 0.00014 3E-09 82.6 14.3 118 7-131 569-701 (1042)
181 TIGR00518 alaDH alanine dehydr 97.9 4.9E-05 1.1E-09 77.8 9.8 100 7-110 167-269 (370)
182 PRK06046 alanine dehydrogenase 97.9 7E-05 1.5E-09 75.4 10.7 117 6-132 128-246 (326)
183 COG0673 MviM Predicted dehydro 97.9 0.00014 2.9E-09 73.5 12.5 112 6-128 2-120 (342)
184 PRK00048 dihydrodipicolinate r 97.9 8.2E-05 1.8E-09 72.3 10.4 91 7-111 1-94 (257)
185 PRK13303 L-aspartate dehydroge 97.9 0.00011 2.3E-09 71.9 11.2 118 7-138 1-126 (265)
186 PRK00045 hemA glutamyl-tRNA re 97.9 4E-05 8.6E-10 80.0 8.5 96 6-109 181-281 (423)
187 TIGR00036 dapB dihydrodipicoli 97.8 0.00017 3.6E-09 70.5 11.6 118 7-132 1-124 (266)
188 PLN02494 adenosylhomocysteinas 97.8 0.00011 2.5E-09 76.2 10.8 98 8-119 255-353 (477)
189 PRK07589 ornithine cyclodeamin 97.8 9.6E-05 2.1E-09 74.6 10.1 101 6-113 128-230 (346)
190 PRK05476 S-adenosyl-L-homocyst 97.8 0.00012 2.6E-09 75.7 10.7 90 8-112 213-303 (425)
191 PTZ00082 L-lactate dehydrogena 97.8 0.00017 3.6E-09 72.4 11.5 99 8-111 7-131 (321)
192 TIGR01809 Shik-DH-AROM shikima 97.8 0.00022 4.8E-09 70.3 12.2 119 8-130 126-251 (282)
193 PRK12549 shikimate 5-dehydroge 97.8 7.2E-05 1.6E-09 73.8 8.7 118 7-131 127-248 (284)
194 PF02423 OCD_Mu_crystall: Orni 97.8 6.2E-05 1.3E-09 75.3 8.3 101 6-113 127-229 (313)
195 PF02254 TrkA_N: TrkA-N domain 97.8 0.00025 5.3E-09 59.8 10.9 110 10-130 1-113 (116)
196 cd01339 LDH-like_MDH L-lactate 97.8 0.00011 2.3E-09 73.2 10.0 97 10-111 1-118 (300)
197 cd05297 GH4_alpha_glucosidase_ 97.8 9.8E-05 2.1E-09 77.0 10.1 74 8-84 1-85 (423)
198 PRK00258 aroE shikimate 5-dehy 97.8 8.4E-05 1.8E-09 73.1 9.0 117 7-130 123-241 (278)
199 cd01078 NAD_bind_H4MPT_DH NADP 97.8 0.00016 3.5E-09 67.1 10.4 103 7-112 28-133 (194)
200 cd05292 LDH_2 A subgroup of L- 97.8 0.00012 2.6E-09 73.1 9.8 73 8-84 1-78 (308)
201 TIGR01761 thiaz-red thiazoliny 97.8 0.00037 8.1E-09 70.3 13.2 110 7-130 3-119 (343)
202 PF00056 Ldh_1_N: lactate/mala 97.8 0.00015 3.2E-09 63.8 9.0 99 8-110 1-120 (141)
203 cd05291 HicDH_like L-2-hydroxy 97.7 0.00026 5.5E-09 70.7 11.6 98 8-110 1-119 (306)
204 PTZ00117 malate dehydrogenase; 97.7 0.00026 5.7E-09 71.0 11.7 100 7-111 5-125 (319)
205 COG5495 Uncharacterized conser 97.7 0.00021 4.6E-09 66.3 9.9 191 6-221 9-207 (289)
206 PRK13301 putative L-aspartate 97.7 0.00031 6.8E-09 67.5 11.2 118 7-139 2-128 (267)
207 PRK04148 hypothetical protein; 97.7 0.00025 5.4E-09 61.3 9.5 99 7-112 17-115 (134)
208 PRK10669 putative cation:proto 97.7 0.00043 9.4E-09 74.9 13.1 116 8-133 418-535 (558)
209 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00023 5.1E-09 73.4 10.4 88 8-110 203-291 (413)
210 PF01118 Semialdhyde_dh: Semia 97.7 0.00011 2.3E-09 62.9 6.5 95 9-111 1-100 (121)
211 cd01483 E1_enzyme_family Super 97.6 0.00036 7.9E-09 61.4 9.8 122 9-136 1-124 (143)
212 PF13380 CoA_binding_2: CoA bi 97.6 9.2E-05 2E-09 62.8 5.5 104 9-133 2-109 (116)
213 PRK03659 glutathione-regulated 97.6 0.00057 1.2E-08 74.5 12.9 114 7-130 400-515 (601)
214 PRK00066 ldh L-lactate dehydro 97.6 0.0007 1.5E-08 67.8 12.4 101 5-110 4-124 (315)
215 COG0373 HemA Glutamyl-tRNA red 97.6 0.00035 7.5E-09 71.5 10.3 72 7-85 178-250 (414)
216 PRK06199 ornithine cyclodeamin 97.6 0.00024 5.2E-09 72.8 8.9 100 5-109 153-260 (379)
217 PRK11579 putative oxidoreducta 97.6 0.00096 2.1E-08 67.7 13.2 110 7-129 4-118 (346)
218 cd05293 LDH_1 A subgroup of L- 97.6 0.00085 1.9E-08 67.0 12.4 100 6-110 2-122 (312)
219 PF03435 Saccharop_dh: Sacchar 97.6 0.00074 1.6E-08 69.6 12.2 120 10-137 1-127 (386)
220 KOG0068 D-3-phosphoglycerate d 97.6 0.00052 1.1E-08 67.2 10.2 105 8-124 147-252 (406)
221 PRK13940 glutamyl-tRNA reducta 97.5 0.00019 4.2E-09 74.3 7.5 75 6-86 180-255 (414)
222 PRK03562 glutathione-regulated 97.5 0.00086 1.9E-08 73.4 12.8 115 8-133 401-518 (621)
223 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00038 8.2E-09 63.1 8.1 75 7-111 44-119 (168)
224 KOG2741 Dimeric dihydrodiol de 97.5 0.0018 3.9E-08 64.0 13.3 121 5-132 4-129 (351)
225 cd00650 LDH_MDH_like NAD-depen 97.5 0.00041 8.9E-09 67.7 8.7 98 10-111 1-122 (263)
226 PRK00436 argC N-acetyl-gamma-g 97.5 0.00035 7.6E-09 70.8 8.5 101 6-113 1-104 (343)
227 PRK08300 acetaldehyde dehydrog 97.4 0.0014 3E-08 64.7 11.6 95 7-111 4-104 (302)
228 PRK09496 trkA potassium transp 97.4 0.0013 2.8E-08 69.2 12.0 96 8-107 1-99 (453)
229 cd00300 LDH_like L-lactate deh 97.4 0.0014 3E-08 65.2 11.4 96 10-110 1-117 (300)
230 PRK06270 homoserine dehydrogen 97.4 0.0015 3.3E-08 66.1 11.8 130 7-137 2-156 (341)
231 TIGR01850 argC N-acetyl-gamma- 97.4 0.00066 1.4E-08 68.9 8.6 97 8-111 1-102 (346)
232 PF14833 NAD_binding_11: NAD-b 97.3 0.0041 9E-08 53.1 11.9 101 312-428 1-103 (122)
233 PRK09496 trkA potassium transp 97.3 0.0035 7.6E-08 65.9 13.6 115 7-131 231-348 (453)
234 PRK10206 putative oxidoreducta 97.3 0.0029 6.2E-08 64.3 12.3 113 7-130 1-119 (344)
235 PRK04207 glyceraldehyde-3-phos 97.3 0.0017 3.8E-08 65.7 10.7 97 7-110 1-111 (341)
236 PF01262 AlaDh_PNT_C: Alanine 97.3 0.0004 8.6E-09 63.0 5.3 96 7-109 20-140 (168)
237 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0027 5.9E-08 60.4 11.0 116 6-132 30-158 (227)
238 PRK15076 alpha-galactosidase; 97.2 0.0012 2.6E-08 68.9 9.2 75 7-84 1-86 (431)
239 TIGR03215 ac_ald_DH_ac acetald 97.2 0.0023 5E-08 62.9 10.6 93 8-111 2-98 (285)
240 cd05294 LDH-like_MDH_nadp A la 97.2 0.0021 4.5E-08 64.3 10.2 103 8-115 1-128 (309)
241 PRK00961 H(2)-dependent methyl 97.2 0.018 3.9E-07 55.1 15.4 148 57-220 128-280 (342)
242 PRK02318 mannitol-1-phosphate 97.2 0.002 4.4E-08 66.3 10.0 103 8-111 1-125 (381)
243 COG0686 Ald Alanine dehydrogen 97.2 0.0016 3.6E-08 63.3 8.5 98 7-108 168-268 (371)
244 PRK06349 homoserine dehydrogen 97.2 0.002 4.3E-08 67.3 9.8 120 7-137 3-135 (426)
245 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0037 7.9E-08 59.1 10.7 114 7-132 23-149 (217)
246 cd05311 NAD_bind_2_malic_enz N 97.2 0.0032 7E-08 59.9 10.4 107 7-128 25-145 (226)
247 PLN02602 lactate dehydrogenase 97.1 0.0049 1.1E-07 62.5 12.1 98 8-110 38-156 (350)
248 TIGR02354 thiF_fam2 thiamine b 97.1 0.0029 6.4E-08 59.0 9.7 33 7-39 21-54 (200)
249 TIGR01723 hmd_TIGR 5,10-methen 97.1 0.02 4.4E-07 54.9 15.1 151 57-220 126-278 (340)
250 TIGR00561 pntA NAD(P) transhyd 97.1 0.002 4.3E-08 68.1 9.3 100 7-110 164-286 (511)
251 PRK14175 bifunctional 5,10-met 97.1 0.0018 4E-08 63.4 8.4 74 8-111 159-233 (286)
252 COG0169 AroE Shikimate 5-dehyd 97.1 0.0029 6.4E-08 62.0 9.5 117 8-131 127-247 (283)
253 PRK14189 bifunctional 5,10-met 97.1 0.0019 4.1E-08 63.2 8.0 74 8-111 159-233 (285)
254 COG0771 MurD UDP-N-acetylmuram 97.1 0.0049 1.1E-07 64.1 11.4 130 2-138 2-148 (448)
255 COG2910 Putative NADH-flavin r 97.1 0.002 4.4E-08 58.1 7.3 72 8-84 1-73 (211)
256 cd05191 NAD_bind_amino_acid_DH 97.0 0.005 1.1E-07 49.1 8.6 63 7-108 23-86 (86)
257 PRK14027 quinate/shikimate deh 97.0 0.0046 1E-07 60.9 9.8 117 8-131 128-250 (283)
258 COG0002 ArgC Acetylglutamate s 97.0 0.003 6.6E-08 62.7 8.4 154 6-165 1-167 (349)
259 PRK06718 precorrin-2 dehydroge 96.9 0.0096 2.1E-07 55.7 11.2 79 8-95 11-91 (202)
260 PRK12548 shikimate 5-dehydroge 96.9 0.0052 1.1E-07 60.8 9.9 120 8-130 127-256 (289)
261 PF13460 NAD_binding_10: NADH( 96.9 0.0039 8.5E-08 56.7 8.4 69 10-84 1-71 (183)
262 PRK14106 murD UDP-N-acetylmura 96.9 0.016 3.4E-07 61.1 13.8 73 7-83 5-78 (450)
263 PRK09424 pntA NAD(P) transhydr 96.9 0.0062 1.3E-07 64.6 10.6 45 7-51 165-209 (509)
264 PLN02968 Probable N-acetyl-gam 96.9 0.0025 5.4E-08 65.4 7.4 98 6-111 37-137 (381)
265 TIGR02717 AcCoA-syn-alpha acet 96.9 0.0046 1E-07 65.0 9.5 106 8-131 8-126 (447)
266 PRK00683 murD UDP-N-acetylmura 96.9 0.011 2.3E-07 61.8 12.2 111 8-128 4-130 (418)
267 cd05290 LDH_3 A subgroup of L- 96.8 0.011 2.4E-07 58.9 11.5 71 9-83 1-78 (307)
268 PRK01710 murD UDP-N-acetylmura 96.8 0.015 3.2E-07 61.5 12.8 115 7-129 14-146 (458)
269 PF02629 CoA_binding: CoA bind 96.8 0.00093 2E-08 54.6 3.0 79 8-96 4-84 (96)
270 TIGR01019 sucCoAalpha succinyl 96.8 0.0094 2E-07 58.6 10.5 117 7-136 6-124 (286)
271 cd01337 MDH_glyoxysomal_mitoch 96.8 0.0052 1.1E-07 61.2 8.8 98 8-111 1-120 (310)
272 COG1064 AdhP Zn-dependent alco 96.8 0.0071 1.5E-07 60.5 9.4 93 8-110 168-261 (339)
273 TIGR02356 adenyl_thiF thiazole 96.8 0.02 4.3E-07 53.5 12.0 124 7-136 21-146 (202)
274 PRK03369 murD UDP-N-acetylmura 96.8 0.021 4.6E-07 60.8 13.7 114 8-129 13-146 (488)
275 PRK12475 thiamine/molybdopteri 96.8 0.016 3.4E-07 58.6 12.0 124 7-136 24-151 (338)
276 PRK10792 bifunctional 5,10-met 96.7 0.006 1.3E-07 59.7 8.4 74 8-111 160-234 (285)
277 PF00984 UDPG_MGDP_dh: UDP-glu 96.7 0.012 2.5E-07 48.2 8.5 88 184-291 2-89 (96)
278 PRK14982 acyl-ACP reductase; P 96.7 0.0084 1.8E-07 60.3 9.2 113 6-136 154-269 (340)
279 PRK06719 precorrin-2 dehydroge 96.7 0.015 3.3E-07 52.0 10.0 77 8-95 14-91 (157)
280 PF03447 NAD_binding_3: Homose 96.7 0.016 3.4E-07 49.0 9.5 105 14-129 1-114 (117)
281 COG2344 AT-rich DNA-binding pr 96.7 0.0032 6.8E-08 56.9 5.3 84 5-96 82-168 (211)
282 TIGR01470 cysG_Nterm siroheme 96.6 0.024 5.3E-07 53.1 11.6 67 8-84 10-80 (205)
283 PF02882 THF_DHG_CYH_C: Tetrah 96.6 0.007 1.5E-07 54.2 7.5 75 8-112 37-112 (160)
284 PRK12749 quinate/shikimate deh 96.6 0.013 2.8E-07 57.9 10.2 120 8-131 125-254 (288)
285 PRK14874 aspartate-semialdehyd 96.6 0.004 8.8E-08 62.9 6.6 92 7-111 1-97 (334)
286 PRK06392 homoserine dehydrogen 96.6 0.015 3.3E-07 58.3 10.6 128 8-138 1-148 (326)
287 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.014 2.9E-07 53.3 9.4 119 9-136 1-124 (174)
288 PRK05678 succinyl-CoA syntheta 96.6 0.015 3.3E-07 57.3 10.3 117 7-136 8-126 (291)
289 PRK00141 murD UDP-N-acetylmura 96.6 0.028 6E-07 59.7 13.0 114 7-129 15-150 (473)
290 PRK01390 murD UDP-N-acetylmura 96.6 0.033 7.2E-07 58.8 13.6 114 7-130 9-144 (460)
291 PRK14192 bifunctional 5,10-met 96.6 0.0062 1.3E-07 59.9 7.5 74 8-111 160-234 (283)
292 PRK05472 redox-sensing transcr 96.6 0.0035 7.5E-08 59.1 5.3 80 7-94 84-166 (213)
293 TIGR01759 MalateDH-SF1 malate 96.6 0.017 3.6E-07 58.0 10.4 99 8-109 4-130 (323)
294 PRK02006 murD UDP-N-acetylmura 96.5 0.037 8E-07 59.1 13.6 123 1-129 1-150 (498)
295 PRK05442 malate dehydrogenase; 96.5 0.017 3.8E-07 58.0 10.3 101 7-110 4-132 (326)
296 PTZ00325 malate dehydrogenase; 96.5 0.012 2.6E-07 58.9 9.0 72 6-83 7-86 (321)
297 PLN00106 malate dehydrogenase 96.5 0.012 2.6E-07 59.1 9.0 36 5-40 16-54 (323)
298 TIGR01772 MDH_euk_gproteo mala 96.5 0.0092 2E-07 59.6 8.1 96 9-111 1-119 (312)
299 PRK05086 malate dehydrogenase; 96.5 0.021 4.5E-07 57.1 10.6 97 8-111 1-121 (312)
300 PRK15059 tartronate semialdehy 96.5 0.042 9.1E-07 54.5 12.7 121 310-445 161-285 (292)
301 PLN00112 malate dehydrogenase 96.5 0.025 5.3E-07 59.0 11.3 101 7-110 100-228 (444)
302 cd01338 MDH_choloroplast_like 96.4 0.011 2.3E-07 59.5 8.3 99 8-109 3-129 (322)
303 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.017 3.7E-07 50.6 8.3 74 8-111 29-103 (140)
304 PRK14191 bifunctional 5,10-met 96.4 0.011 2.4E-07 57.9 7.6 74 8-111 158-232 (285)
305 PRK08328 hypothetical protein; 96.4 0.027 5.9E-07 53.8 10.3 124 7-136 27-153 (231)
306 PRK02472 murD UDP-N-acetylmura 96.4 0.059 1.3E-06 56.6 13.7 115 8-129 6-137 (447)
307 PRK09414 glutamate dehydrogena 96.3 0.032 7E-07 58.1 11.4 118 7-131 232-365 (445)
308 PF00899 ThiF: ThiF family; I 96.3 0.0048 1E-07 53.7 4.5 123 8-136 3-127 (135)
309 PRK11861 bifunctional prephena 96.3 0.028 6E-07 62.3 11.5 93 77-170 1-106 (673)
310 PRK12550 shikimate 5-dehydroge 96.3 0.019 4E-07 56.3 9.0 108 8-130 123-236 (272)
311 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.01 2.3E-07 54.5 6.8 89 8-111 63-159 (197)
312 CHL00194 ycf39 Ycf39; Provisio 96.3 0.012 2.7E-07 58.7 8.0 70 8-82 1-73 (317)
313 PRK05671 aspartate-semialdehyd 96.3 0.0077 1.7E-07 60.8 6.4 94 6-111 3-100 (336)
314 PF03720 UDPG_MGDP_dh_C: UDP-g 96.3 0.013 2.7E-07 48.8 6.7 88 17-111 17-104 (106)
315 cd01485 E1-1_like Ubiquitin ac 96.3 0.018 4E-07 53.6 8.4 123 7-136 19-148 (198)
316 PRK13394 3-hydroxybutyrate deh 96.3 0.028 6.1E-07 54.0 9.9 91 1-110 1-94 (262)
317 PLN02477 glutamate dehydrogena 96.2 0.035 7.5E-07 57.4 10.8 114 8-132 207-333 (410)
318 PRK05884 short chain dehydroge 96.2 0.086 1.9E-06 49.8 12.9 42 8-49 1-43 (223)
319 PRK14176 bifunctional 5,10-met 96.2 0.016 3.5E-07 56.7 8.0 73 8-110 165-238 (287)
320 COG0039 Mdh Malate/lactate deh 96.2 0.03 6.4E-07 55.6 9.8 98 8-110 1-120 (313)
321 TIGR01757 Malate-DH_plant mala 96.2 0.043 9.3E-07 56.3 11.1 100 8-110 45-172 (387)
322 PRK11559 garR tartronate semia 96.2 0.06 1.3E-06 53.3 12.0 106 310-430 164-269 (296)
323 PRK07688 thiamine/molybdopteri 96.1 0.03 6.6E-07 56.6 9.7 124 7-136 24-151 (339)
324 PRK12828 short chain dehydroge 96.1 0.063 1.4E-06 50.6 11.5 91 1-110 1-92 (239)
325 PRK00421 murC UDP-N-acetylmura 96.1 0.056 1.2E-06 57.2 12.1 112 6-127 6-134 (461)
326 PF05368 NmrA: NmrA-like famil 96.1 0.019 4.2E-07 54.5 7.9 70 10-83 1-74 (233)
327 cd00704 MDH Malate dehydrogena 96.1 0.017 3.7E-07 58.0 7.6 98 9-109 2-127 (323)
328 PRK14183 bifunctional 5,10-met 96.1 0.02 4.3E-07 55.9 7.7 74 8-111 158-232 (281)
329 PRK08374 homoserine dehydrogen 96.1 0.077 1.7E-06 53.6 12.3 128 7-139 2-155 (336)
330 PF10100 DUF2338: Uncharacteri 96.0 0.49 1.1E-05 48.2 17.2 159 7-170 1-196 (429)
331 PLN02383 aspartate semialdehyd 96.0 0.02 4.4E-07 58.0 7.6 92 5-111 5-103 (344)
332 PRK01438 murD UDP-N-acetylmura 96.0 0.062 1.3E-06 57.1 11.6 116 7-129 16-151 (480)
333 PRK14173 bifunctional 5,10-met 96.0 0.027 6E-07 55.2 8.0 74 8-111 156-230 (287)
334 COG0289 DapB Dihydrodipicolina 95.9 0.077 1.7E-06 50.9 10.7 109 6-125 1-117 (266)
335 PRK02705 murD UDP-N-acetylmura 95.9 0.088 1.9E-06 55.5 12.5 33 9-41 2-34 (459)
336 TIGR01771 L-LDH-NAD L-lactate 95.9 0.051 1.1E-06 54.0 9.9 95 12-110 1-115 (299)
337 PRK00676 hemA glutamyl-tRNA re 95.9 0.024 5.3E-07 56.9 7.6 36 6-41 173-209 (338)
338 PLN02520 bifunctional 3-dehydr 95.9 0.059 1.3E-06 57.9 11.1 113 8-130 380-495 (529)
339 TIGR03649 ergot_EASG ergot alk 95.9 0.037 8.1E-07 54.2 9.0 35 9-43 1-36 (285)
340 PRK12939 short chain dehydroge 95.9 0.06 1.3E-06 51.3 10.1 93 1-110 1-94 (250)
341 PRK03803 murD UDP-N-acetylmura 95.9 0.073 1.6E-06 56.0 11.5 121 9-137 8-145 (448)
342 PRK14186 bifunctional 5,10-met 95.9 0.03 6.6E-07 55.1 8.0 74 8-111 159-233 (297)
343 cd01336 MDH_cytoplasmic_cytoso 95.9 0.047 1E-06 55.0 9.6 99 8-109 3-129 (325)
344 PRK14170 bifunctional 5,10-met 95.9 0.033 7.1E-07 54.5 8.1 74 8-111 158-232 (284)
345 cd05313 NAD_bind_2_Glu_DH NAD( 95.8 0.15 3.1E-06 49.3 12.4 118 8-132 39-176 (254)
346 PRK14172 bifunctional 5,10-met 95.8 0.031 6.7E-07 54.6 7.8 74 8-111 159-233 (278)
347 PRK14177 bifunctional 5,10-met 95.8 0.034 7.4E-07 54.4 8.1 74 8-111 160-234 (284)
348 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.056 1.2E-06 50.3 9.2 120 7-136 21-145 (197)
349 PRK08644 thiamine biosynthesis 95.8 0.045 9.7E-07 51.6 8.6 121 7-133 28-150 (212)
350 PRK14169 bifunctional 5,10-met 95.8 0.033 7.2E-07 54.4 7.8 74 8-111 157-231 (282)
351 PRK10537 voltage-gated potassi 95.8 0.11 2.4E-06 53.5 12.1 113 8-133 241-356 (393)
352 TIGR01087 murD UDP-N-acetylmur 95.8 0.091 2E-06 55.0 11.7 121 9-138 1-140 (433)
353 TIGR01082 murC UDP-N-acetylmur 95.8 0.097 2.1E-06 55.1 11.9 109 9-127 1-126 (448)
354 PLN00141 Tic62-NAD(P)-related 95.7 0.026 5.6E-07 54.3 6.9 41 6-46 16-57 (251)
355 PRK07454 short chain dehydroge 95.7 0.078 1.7E-06 50.4 10.2 87 7-110 6-93 (241)
356 PRK06139 short chain dehydroge 95.7 0.076 1.6E-06 53.6 10.4 93 1-110 1-94 (330)
357 PF02056 Glyco_hydro_4: Family 95.7 0.1 2.2E-06 47.8 10.2 73 9-84 1-84 (183)
358 cd00757 ThiF_MoeB_HesA_family 95.7 0.14 3E-06 48.8 11.7 124 7-136 21-146 (228)
359 PRK14180 bifunctional 5,10-met 95.7 0.038 8.1E-07 54.1 7.8 74 8-111 159-233 (282)
360 PRK11863 N-acetyl-gamma-glutam 95.7 0.042 9E-07 54.8 8.3 82 6-111 1-84 (313)
361 PRK14166 bifunctional 5,10-met 95.7 0.04 8.7E-07 53.9 7.9 74 8-111 158-232 (282)
362 TIGR01505 tartro_sem_red 2-hyd 95.7 0.13 2.8E-06 50.8 11.8 105 311-430 162-266 (291)
363 PRK14190 bifunctional 5,10-met 95.6 0.04 8.6E-07 54.0 7.7 74 8-111 159-233 (284)
364 PRK04308 murD UDP-N-acetylmura 95.6 0.14 3E-06 53.9 12.4 115 7-129 5-139 (445)
365 TIGR02355 moeB molybdopterin s 95.6 0.047 1E-06 52.5 8.1 124 7-136 24-149 (240)
366 PLN02516 methylenetetrahydrofo 95.6 0.042 9.2E-07 54.1 7.9 74 8-111 168-242 (299)
367 PRK14187 bifunctional 5,10-met 95.6 0.042 9.1E-07 54.0 7.8 74 8-111 161-235 (294)
368 PRK15461 NADH-dependent gamma- 95.6 0.15 3.2E-06 50.7 11.8 104 310-429 163-268 (296)
369 PRK14193 bifunctional 5,10-met 95.5 0.049 1.1E-06 53.4 7.9 74 8-111 159-235 (284)
370 PRK05653 fabG 3-ketoacyl-(acyl 95.5 0.11 2.3E-06 49.2 10.1 42 7-48 5-47 (246)
371 PRK14178 bifunctional 5,10-met 95.5 0.042 9.1E-07 53.6 7.3 74 8-111 153-227 (279)
372 PRK08664 aspartate-semialdehyd 95.5 0.049 1.1E-06 55.4 8.2 97 7-111 3-110 (349)
373 PRK10538 malonic semialdehyde 95.4 0.12 2.7E-06 49.4 10.4 40 8-47 1-41 (248)
374 TIGR01546 GAPDH-II_archae glyc 95.4 0.087 1.9E-06 52.9 9.5 39 10-48 1-41 (333)
375 PRK14171 bifunctional 5,10-met 95.4 0.052 1.1E-06 53.3 7.6 74 8-111 160-234 (288)
376 PRK08223 hypothetical protein; 95.4 0.095 2.1E-06 51.5 9.4 125 7-136 27-154 (287)
377 PLN03209 translocon at the inn 95.4 0.43 9.3E-06 51.4 15.0 75 9-83 82-169 (576)
378 PRK05690 molybdopterin biosynt 95.4 0.13 2.9E-06 49.5 10.4 124 7-136 32-157 (245)
379 PRK14182 bifunctional 5,10-met 95.4 0.058 1.3E-06 52.7 7.8 74 8-111 158-232 (282)
380 TIGR01758 MDH_euk_cyt malate d 95.4 0.046 1E-06 54.9 7.4 33 9-41 1-41 (324)
381 TIGR00978 asd_EA aspartate-sem 95.4 0.053 1.2E-06 55.0 7.9 97 8-111 1-107 (341)
382 PRK08762 molybdopterin biosynt 95.3 0.17 3.7E-06 52.0 11.6 124 7-136 135-260 (376)
383 PRK06153 hypothetical protein; 95.3 0.11 2.3E-06 53.0 9.9 119 7-135 176-300 (393)
384 PRK12429 3-hydroxybutyrate deh 95.3 0.11 2.5E-06 49.6 9.8 85 8-109 5-90 (258)
385 PRK07326 short chain dehydroge 95.3 0.13 2.8E-06 48.6 10.0 41 8-48 7-48 (237)
386 PRK06182 short chain dehydroge 95.3 0.16 3.4E-06 49.4 10.8 80 8-110 4-84 (273)
387 PRK05597 molybdopterin biosynt 95.3 0.21 4.5E-06 51.0 11.9 124 7-136 28-153 (355)
388 PRK14030 glutamate dehydrogena 95.3 0.17 3.8E-06 52.6 11.4 117 8-131 229-365 (445)
389 COG0460 ThrA Homoserine dehydr 95.3 0.093 2E-06 52.4 9.0 125 6-139 2-146 (333)
390 PRK12829 short chain dehydroge 95.3 0.14 3E-06 49.2 10.2 43 6-48 10-53 (264)
391 TIGR01296 asd_B aspartate-semi 95.3 0.031 6.8E-07 56.5 5.9 90 9-111 1-95 (339)
392 PRK11908 NAD-dependent epimera 95.3 0.1 2.2E-06 52.8 9.7 40 7-46 1-42 (347)
393 COG2084 MmsB 3-hydroxyisobutyr 95.2 0.2 4.3E-06 49.2 11.0 105 310-430 163-268 (286)
394 PLN02897 tetrahydrofolate dehy 95.2 0.065 1.4E-06 53.7 7.7 74 8-111 215-289 (345)
395 PRK06057 short chain dehydroge 95.2 0.22 4.7E-06 47.8 11.3 41 7-47 7-48 (255)
396 PLN02616 tetrahydrofolate dehy 95.2 0.067 1.4E-06 53.9 7.7 74 8-111 232-306 (364)
397 TIGR01692 HIBADH 3-hydroxyisob 95.2 0.15 3.2E-06 50.4 10.2 107 310-429 158-269 (288)
398 PRK07109 short chain dehydroge 95.2 0.16 3.4E-06 51.3 10.7 87 7-110 8-95 (334)
399 COG1648 CysG Siroheme synthase 95.2 0.35 7.6E-06 45.4 12.1 76 8-91 13-89 (210)
400 PRK08040 putative semialdehyde 95.1 0.031 6.7E-07 56.3 5.4 93 6-111 3-100 (336)
401 PRK14181 bifunctional 5,10-met 95.1 0.077 1.7E-06 52.0 7.8 74 8-111 154-232 (287)
402 PLN02353 probable UDP-glucose 95.1 0.18 3.9E-06 53.3 11.1 117 7-133 324-466 (473)
403 KOG3007 Mu-crystallin [Amino a 95.1 0.095 2.1E-06 50.2 7.9 117 7-132 138-260 (333)
404 PRK08309 short chain dehydroge 95.1 0.27 5.9E-06 44.9 10.9 40 8-47 1-40 (177)
405 PRK06728 aspartate-semialdehyd 95.0 0.054 1.2E-06 54.7 6.7 91 8-111 6-102 (347)
406 TIGR03366 HpnZ_proposed putati 95.0 0.54 1.2E-05 46.0 13.7 94 8-109 122-219 (280)
407 PRK07774 short chain dehydroge 95.0 0.18 3.9E-06 48.1 10.1 86 8-110 7-93 (250)
408 PRK03806 murD UDP-N-acetylmura 95.0 0.32 6.9E-06 51.0 12.7 115 7-130 6-135 (438)
409 TIGR01851 argC_other N-acetyl- 95.0 0.088 1.9E-06 52.2 7.8 81 8-111 2-83 (310)
410 PRK06180 short chain dehydroge 95.0 0.19 4.1E-06 49.0 10.3 83 8-110 5-88 (277)
411 PRK08265 short chain dehydroge 94.9 0.25 5.3E-06 47.7 10.9 41 8-48 7-48 (261)
412 PRK12409 D-amino acid dehydrog 94.9 0.03 6.6E-07 58.0 4.8 34 7-40 1-34 (410)
413 PRK07074 short chain dehydroge 94.9 0.25 5.4E-06 47.3 10.9 83 9-110 4-87 (257)
414 PF03059 NAS: Nicotianamine sy 94.9 0.12 2.5E-06 50.5 8.4 103 8-110 122-232 (276)
415 PRK14573 bifunctional D-alanyl 94.9 0.24 5.2E-06 56.2 12.2 110 8-127 5-131 (809)
416 PRK05993 short chain dehydroge 94.9 0.19 4.1E-06 49.0 10.1 40 8-47 5-45 (277)
417 COG0499 SAM1 S-adenosylhomocys 94.9 0.092 2E-06 52.4 7.6 86 9-109 211-297 (420)
418 cd05197 GH4_glycoside_hydrolas 94.9 0.28 6E-06 51.3 11.7 74 8-84 1-85 (425)
419 PRK05693 short chain dehydroge 94.9 0.24 5.2E-06 48.1 10.7 80 8-110 2-82 (274)
420 PRK07063 short chain dehydroge 94.8 0.2 4.3E-06 48.2 9.9 95 1-110 1-96 (260)
421 cd05298 GH4_GlvA_pagL_like Gly 94.8 0.24 5.2E-06 51.9 11.0 73 8-84 1-85 (437)
422 PRK14168 bifunctional 5,10-met 94.8 0.11 2.3E-06 51.4 7.9 74 8-111 162-240 (297)
423 PRK00517 prmA ribosomal protei 94.8 0.31 6.8E-06 47.0 11.2 114 8-131 121-235 (250)
424 PRK07024 short chain dehydroge 94.8 0.2 4.4E-06 48.1 9.8 85 8-110 3-88 (257)
425 PRK06101 short chain dehydroge 94.8 0.25 5.5E-06 46.9 10.4 42 8-49 2-44 (240)
426 PRK08017 oxidoreductase; Provi 94.8 0.23 5E-06 47.5 10.1 39 8-46 3-42 (256)
427 PRK04690 murD UDP-N-acetylmura 94.7 0.35 7.6E-06 51.2 12.3 113 7-128 8-143 (468)
428 PRK07067 sorbitol dehydrogenas 94.7 0.28 6.1E-06 47.1 10.7 41 8-48 7-48 (257)
429 cd05296 GH4_P_beta_glucosidase 94.7 0.27 5.8E-06 51.3 11.1 74 8-84 1-86 (419)
430 PRK06172 short chain dehydroge 94.7 0.23 5.1E-06 47.4 10.1 42 7-48 7-49 (253)
431 PRK06200 2,3-dihydroxy-2,3-dih 94.7 0.33 7.2E-06 46.7 11.2 83 8-110 7-90 (263)
432 TIGR03736 PRTRC_ThiF PRTRC sys 94.7 0.21 4.6E-06 48.0 9.4 34 7-40 11-55 (244)
433 PRK08340 glucose-1-dehydrogena 94.7 0.2 4.4E-06 48.2 9.6 84 8-109 1-85 (259)
434 TIGR02964 xanthine_xdhC xanthi 94.7 0.27 5.8E-06 47.4 10.2 113 7-127 100-212 (246)
435 COG0190 FolD 5,10-methylene-te 94.7 0.12 2.5E-06 50.3 7.6 74 8-111 157-231 (283)
436 PRK14185 bifunctional 5,10-met 94.7 0.12 2.5E-06 50.9 7.8 74 8-111 158-236 (293)
437 COG1486 CelF Alpha-galactosida 94.7 0.24 5.1E-06 51.3 10.2 76 6-84 2-88 (442)
438 PRK07890 short chain dehydroge 94.6 0.22 4.7E-06 47.7 9.6 86 8-110 6-92 (258)
439 PRK14852 hypothetical protein; 94.6 0.17 3.7E-06 57.4 9.9 125 7-136 332-459 (989)
440 PRK08306 dipicolinate synthase 94.6 0.16 3.5E-06 50.4 8.9 108 8-133 3-121 (296)
441 PLN00016 RNA-binding protein; 94.6 0.18 3.8E-06 51.8 9.5 38 5-42 50-92 (378)
442 COG1063 Tdh Threonine dehydrog 94.6 0.2 4.3E-06 51.0 9.8 95 9-111 171-272 (350)
443 COG0300 DltE Short-chain dehyd 94.6 0.25 5.5E-06 47.9 9.8 86 7-108 6-92 (265)
444 PRK05866 short chain dehydroge 94.6 0.22 4.7E-06 49.2 9.8 86 8-110 41-127 (293)
445 PRK06124 gluconate 5-dehydroge 94.6 0.26 5.7E-06 47.2 10.2 87 7-110 11-98 (256)
446 PRK07523 gluconate 5-dehydroge 94.6 0.25 5.4E-06 47.4 9.9 86 8-110 11-97 (255)
447 PRK07060 short chain dehydroge 94.6 0.17 3.7E-06 48.0 8.6 41 8-48 10-51 (245)
448 PRK08267 short chain dehydroge 94.6 0.34 7.3E-06 46.6 10.8 42 7-48 1-43 (260)
449 COG0026 PurK Phosphoribosylami 94.6 0.059 1.3E-06 54.1 5.4 68 7-83 1-75 (375)
450 COG0334 GdhA Glutamate dehydro 94.5 0.21 4.6E-06 51.0 9.4 108 7-131 207-333 (411)
451 PRK07877 hypothetical protein; 94.5 0.15 3.2E-06 56.5 8.9 124 7-137 107-232 (722)
452 PRK05868 hypothetical protein; 94.5 0.044 9.5E-07 56.2 4.6 35 7-41 1-35 (372)
453 PF00208 ELFV_dehydrog: Glutam 94.5 0.25 5.4E-06 47.6 9.4 118 7-132 32-169 (244)
454 PRK05786 fabG 3-ketoacyl-(acyl 94.4 0.37 7.9E-06 45.5 10.6 41 8-48 6-47 (238)
455 PRK01368 murD UDP-N-acetylmura 94.4 0.38 8.1E-06 50.8 11.5 120 8-136 7-140 (454)
456 PRK07666 fabG 3-ketoacyl-(acyl 94.4 0.3 6.6E-06 46.2 9.9 41 7-47 7-48 (239)
457 PRK08643 acetoin reductase; Va 94.4 0.27 6E-06 47.0 9.7 85 9-110 4-89 (256)
458 PRK14167 bifunctional 5,10-met 94.4 0.15 3.2E-06 50.3 7.8 74 8-111 158-236 (297)
459 PRK09186 flagellin modificatio 94.4 0.28 6.1E-06 46.9 9.7 86 8-108 5-91 (256)
460 PRK06720 hypothetical protein; 94.3 0.39 8.5E-06 43.4 10.0 39 9-47 18-57 (169)
461 PRK07825 short chain dehydroge 94.3 0.44 9.5E-06 46.2 11.0 81 8-109 6-87 (273)
462 PRK12936 3-ketoacyl-(acyl-carr 94.3 0.46 1E-05 44.9 10.9 84 7-110 6-90 (245)
463 PRK07576 short chain dehydroge 94.3 0.34 7.4E-06 46.8 10.2 40 8-47 10-50 (264)
464 PRK07878 molybdopterin biosynt 94.3 0.19 4.2E-06 51.9 8.8 124 7-136 42-167 (392)
465 PRK07814 short chain dehydroge 94.3 0.29 6.4E-06 47.2 9.7 85 8-109 11-96 (263)
466 PRK06482 short chain dehydroge 94.3 0.38 8.2E-06 46.7 10.5 83 8-110 3-86 (276)
467 PRK06598 aspartate-semialdehyd 94.3 0.095 2.1E-06 53.3 6.3 94 7-111 1-101 (369)
468 PRK08339 short chain dehydroge 94.3 0.46 1E-05 46.0 11.0 48 1-48 1-50 (263)
469 PRK05562 precorrin-2 dehydroge 94.3 0.65 1.4E-05 44.0 11.5 77 8-95 26-106 (223)
470 PF00070 Pyr_redox: Pyridine n 94.2 0.082 1.8E-06 41.3 4.7 33 9-41 1-33 (80)
471 PF13450 NAD_binding_8: NAD(P) 94.2 0.071 1.5E-06 40.5 4.1 30 12-41 1-30 (68)
472 cd00755 YgdL_like Family of ac 94.2 0.38 8.2E-06 45.9 10.0 152 7-168 11-171 (231)
473 TIGR03855 NAD_NadX aspartate d 94.2 0.37 8.1E-06 45.9 9.9 86 33-130 5-93 (229)
474 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.3 6.5E-06 46.4 9.5 41 8-48 7-48 (251)
475 PRK14851 hypothetical protein; 94.2 0.25 5.4E-06 54.5 9.9 125 7-136 43-170 (679)
476 PRK06753 hypothetical protein; 94.2 0.055 1.2E-06 55.2 4.6 34 8-41 1-34 (373)
477 TIGR01963 PHB_DH 3-hydroxybuty 94.2 0.28 6.1E-06 46.7 9.3 84 9-109 3-87 (255)
478 PRK03815 murD UDP-N-acetylmura 94.2 0.28 6.1E-06 50.9 9.8 108 8-127 1-116 (401)
479 PRK05600 thiamine biosynthesis 94.2 0.53 1.1E-05 48.3 11.6 124 7-136 41-166 (370)
480 PRK00711 D-amino acid dehydrog 94.2 0.058 1.2E-06 55.9 4.7 34 8-41 1-34 (416)
481 COG2242 CobL Precorrin-6B meth 94.2 0.91 2E-05 41.5 11.7 121 10-136 38-163 (187)
482 PRK06194 hypothetical protein; 94.1 0.49 1.1E-05 46.2 11.0 84 8-110 7-93 (287)
483 PRK15116 sulfur acceptor prote 94.1 0.43 9.3E-06 46.5 10.3 151 7-167 30-190 (268)
484 COG0136 Asd Aspartate-semialde 94.1 0.13 2.8E-06 51.3 6.7 93 7-111 1-100 (334)
485 PRK04663 murD UDP-N-acetylmura 94.1 0.52 1.1E-05 49.4 11.8 112 7-130 7-138 (438)
486 PRK07231 fabG 3-ketoacyl-(acyl 94.1 0.33 7.2E-06 46.1 9.5 41 8-48 6-47 (251)
487 PRK08163 salicylate hydroxylas 94.1 0.061 1.3E-06 55.3 4.7 34 8-41 5-38 (396)
488 TIGR03325 BphB_TodD cis-2,3-di 94.0 0.46 1E-05 45.8 10.6 40 8-47 6-46 (262)
489 PRK08213 gluconate 5-dehydroge 94.0 0.36 7.8E-06 46.3 9.7 86 8-110 13-99 (259)
490 COG2227 UbiG 2-polyprenyl-3-me 94.0 0.42 9.1E-06 45.4 9.6 95 7-107 60-160 (243)
491 PRK08589 short chain dehydroge 94.0 0.48 1E-05 46.0 10.6 85 8-110 7-92 (272)
492 PRK07478 short chain dehydroge 94.0 0.41 8.9E-06 45.8 10.0 86 8-110 7-93 (254)
493 PRK06500 short chain dehydroge 93.9 0.58 1.3E-05 44.4 10.9 40 8-47 7-47 (249)
494 PRK14031 glutamate dehydrogena 93.9 0.44 9.6E-06 49.7 10.5 117 7-131 228-364 (444)
495 PRK00377 cbiT cobalt-precorrin 93.9 0.74 1.6E-05 42.6 11.2 116 8-127 42-163 (198)
496 TIGR01777 yfcH conserved hypot 93.9 0.13 2.9E-06 50.1 6.5 34 11-44 2-36 (292)
497 PRK05867 short chain dehydroge 93.9 0.32 6.9E-06 46.6 9.1 42 8-49 10-52 (253)
498 PRK07236 hypothetical protein; 93.9 0.076 1.7E-06 54.6 5.0 36 6-41 5-40 (386)
499 PRK14184 bifunctional 5,10-met 93.9 0.2 4.4E-06 49.1 7.5 74 8-111 158-236 (286)
500 PF13241 NAD_binding_7: Putati 93.8 0.17 3.6E-06 41.8 6.0 70 8-92 8-78 (103)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-124 Score=903.62 Aligned_cols=456 Identities=59% Similarity=0.966 Sum_probs=437.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+.||+||+|.||++||+|++++||.|.+|||++++++++.+..... .++.++.|++|+++.|++|+.|+++|..+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~--k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKG--KNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccC--CCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 45799999999999999999999999999999999999998865432 2688999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++.++++|+|+|.+|+||||.+|+.+.+|.++.+.|.++|++|++++||||+++|++||+||+||++++|+.+.|+|.++
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 246 (474)
+++. +++|||.|+|+.|+||+||||||+|+|+.||+|+|+|.+++...|++.+++.++|..||++.++|||++|+.++|
T Consensus 161 aAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 161 AAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred Hhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 9997 599999999999999999999999999999999999999999666999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccch
Q 011931 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDK 313 (474)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
+.+|+.++.+++|.|+|.++|||||+|+++.|.++|+|+|+| ++|+.++++|++|... .+.+.
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~----~~~dk 315 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG----EPGDK 315 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC----CCCCH
Confidence 998866666999999999999999999999999999999999 8899999999887431 25688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
..|++.|++|+++++|++|+|||.+|+++|++|+|+|++.+|++|||+||||||.||+.|.++|.++|++.||+++|+|.
T Consensus 316 ~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~ 395 (473)
T COG0362 316 EEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFK 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccccCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIA 469 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~ 469 (474)
..+++.+.+||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||||||+|+|++|.||++|.+..
T Consensus 396 ~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 396 SILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-116 Score=836.18 Aligned_cols=463 Identities=61% Similarity=0.989 Sum_probs=439.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++||+||++.||++|+.|.+++||.|.+|||+.++++++.+...+ +..+....|++|++..|++|++|++.|+.+++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~p 83 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP 83 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc
Confidence 4689999999999999999999999999999999999999876543 23577889999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++..+++|.|+|.+|++|||.+|+.+.+|.++.+++.++|+-|++++||||+++|+.||++|+||++++|..++++|..+
T Consensus 84 VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~i 163 (487)
T KOG2653|consen 84 VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKI 163 (487)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 246 (474)
++++.+++|||.|+|+.|+||+||||||+|+|+.||+|+|+|.++++.+|++.+++.++|..||.+.+.||+++|+.+|+
T Consensus 164 aakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIl 243 (487)
T KOG2653|consen 164 AAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADIL 243 (487)
T ss_pred HHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHh
Confidence 99988999999999999999999999999999999999999999999766999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccch
Q 011931 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDK 313 (474)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
+.+|+ .+.+++++|+|..+|||||+|++..|.++|+|+|+| +||+.++|.+.+|.... ......
T Consensus 244 k~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--~~~~~k 320 (487)
T KOG2653|consen 244 KFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--DMGDDK 320 (487)
T ss_pred heecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch--hhhhHH
Confidence 98775 344899999999999999999999999999999999 89999999999885410 122247
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
..|++++++|+|+++|++|+|||.||++++++++|+||+..|+++||+||||||.||+.|.++|+++|+|.|+++|+.|.
T Consensus 321 ~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~ 400 (487)
T KOG2653|consen 321 KQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFA 400 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCC-ccccccccCCCCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQS 472 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~~~ 472 (474)
.++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++|++++.++
T Consensus 401 ~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~ 480 (487)
T KOG2653|consen 401 KAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNV 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999987777
Q ss_pred CC
Q 011931 473 KI 474 (474)
Q Consensus 473 ~~ 474 (474)
+|
T Consensus 481 s~ 482 (487)
T KOG2653|consen 481 SS 482 (487)
T ss_pred cc
Confidence 64
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-110 Score=864.51 Aligned_cols=456 Identities=59% Similarity=0.998 Sum_probs=425.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+..... +..+..+.+++|+++.|+++|+||+|||++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 46899999999999999999999999999999999999988753221 11245788999999877779999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~-~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 245 (474)
+.+. +++||++|+|+.|+||++||+||+++|++|++++|++.+++ +.| ++++++.++++.|+.+.+.||+++++.++
T Consensus 160 a~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 160 SAKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred hhhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9874 78899999999999999999999999999999999999998 577 99999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccc
Q 011931 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVD 312 (474)
Q Consensus 246 l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~ 312 (474)
+.++|+.++++.+|.|.|.++|||||+|++++|.++|||+|++ ++|..+++++.+|... .++...+
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~-~~~~~~~ 316 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPA-NKTETED 316 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccc-ccccccc
Confidence 9987653335899999999999999999999999999999999 7788888888876310 0011236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHH
Q 011931 313 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 392 (474)
Q Consensus 313 ~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~ 392 (474)
++||+|+|||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccc
Q 011931 393 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466 (474)
Q Consensus 393 ~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 466 (474)
...+++..+.|||+|..|++.|+|+|++++||+||++|+++++|+|+|||||||||+|+|+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.5e-109 Score=860.14 Aligned_cols=468 Identities=85% Similarity=1.318 Sum_probs=432.2
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.+++|+++.|++||+||+|||+
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 34567899999999999999999999999999999999999988742111100234678999999988889999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll 163 (474)
++++++|++++.+.+.+|++|||+||+.|.+++++.+.++++|++|+++||+||+++|+.|+++|+||+++++++++|+|
T Consensus 83 ~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 83 GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~-G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
+.++.+. +++||++|+|+.|+||++||+||+++++.+++++|++.++++. | ++++++.++|+.|+.+.+.||+++++
T Consensus 163 ~~ia~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei~ 240 (493)
T PLN02350 163 EKVAAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEIT 240 (493)
T ss_pred HHHhhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHHH
Confidence 9999886 7789999999999999999999999999999999999999995 8 99999999999999999999999999
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCC--C
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQ--S 307 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~--~ 307 (474)
.+++..+++++++|.++.++||++|||||+|+++.|.++|+|+|++ ++|..+++++++|..... .
T Consensus 241 ~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~~~ 320 (493)
T PLN02350 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDILSA 320 (493)
T ss_pred HHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccccccc
Confidence 9998776667778999999999999999999999999999999996 889999999987521100 0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCc
Q 011931 308 NQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLL 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll 387 (474)
....+...|++.|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|++
T Consensus 321 ~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~ 400 (493)
T PLN02350 321 DSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLL 400 (493)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhc
Confidence 01234578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 388 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
+++.|.+.+.+..++|||+|+.|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|++
T Consensus 401 ~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 480 (493)
T PLN02350 401 VDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTK 480 (493)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 011931 468 IAKQSK 473 (474)
Q Consensus 468 ~~~~~~ 473 (474)
.+..++
T Consensus 481 ~~~~~~ 486 (493)
T PLN02350 481 LARKSK 486 (493)
T ss_pred hcCccc
Confidence 666554
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-108 Score=849.83 Aligned_cols=442 Identities=60% Similarity=0.984 Sum_probs=417.4
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHh
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 96 (474)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++|++++|++||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3111 3678899999999888899999999999999999999999
Q ss_pred cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCc
Q 011931 97 YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176 (474)
Q Consensus 97 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~ 176 (474)
.+.+|++|||+||+.|.++.++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987689999
Q ss_pred eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCc
Q 011931 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDG 255 (474)
Q Consensus 177 ~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~ 255 (474)
+.|+|+.|+||++||+||+++|+.|++++|++.++++ .| ++++++.++|+.|+.+.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 78 999999999999999999999999999999876522556
Q ss_pred chHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchhhHHHHHHH
Q 011931 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQ 322 (474)
Q Consensus 256 ~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (474)
+.+|.|+|.++|||||+|++++|.++|||+|+| ++|..+++++.+|.. ....+.+||+|||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~----~~~~~~~~~i~~v~~ 312 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA----KFEGDKAEFIEDVRQ 312 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC----cccccHHHHHHHHHH
Confidence 899999999999999999999999999999999 789898888876632 112356899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhh
Q 011931 323 ALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSA 402 (474)
Q Consensus 323 ~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 402 (474)
||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|...+++..+.
T Consensus 313 al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~ 392 (459)
T PRK09287 313 ALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDA 392 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 403 WRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 403 ~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
|||+|..|+++|+|+|++++||+||++++++++|+|||||||||||+|+|+|+|++|.||++|++
T Consensus 393 ~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 393 LRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=1.8e-107 Score=845.09 Aligned_cols=450 Identities=59% Similarity=0.973 Sum_probs=420.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.. +.++..+.+++++++.|++||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~--g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAK--GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccC--CCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 49999999999999999999999999999999999998875211 0024567889999988888999999999999999
Q ss_pred HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHhc
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 168 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg~ 168 (474)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+++|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 169 QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 169 ~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~-~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
++ +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| ++++++.++++.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 85 67899999999999999999999999999999999999996 587 9999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchh
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQ 314 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
++|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+| ++|..+++++.+|... ....+.+
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~---~~~~~~~ 312 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP---EPAVDKE 312 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc---cccccHH
Confidence 8764 445899999999999999999999999999999999 7788888888765320 0113558
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHH
Q 011931 315 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 394 (474)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~ 394 (474)
||+|||||||||++|++|+|||+||+++|++|+|++||.+|++|||+||||||+||+.|.++|+++|+++||++|+.|..
T Consensus 313 ~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~ 392 (467)
T TIGR00873 313 EFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKD 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCC--ccccccc
Q 011931 395 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG--SFHTEWF 466 (474)
Q Consensus 395 ~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~--~~h~~w~ 466 (474)
.+++..++|||+|..|++.|+|+|++|+||+||++|+++++|+|+|||||||||+|+|+|+|++| .||++|+
T Consensus 393 ~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 393 ALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999996
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=3e-81 Score=599.34 Aligned_cols=278 Identities=64% Similarity=1.042 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhc
Q 011931 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 265 (474)
Q Consensus 186 g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 265 (474)
||+||||||+|+|++||+++|++.++++..|++++++.++|+.||++.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999975559999999999999999999999999999999876 56779999999999
Q ss_pred CCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 011931 266 GMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSY 332 (474)
Q Consensus 266 ~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 332 (474)
+|||||+|++++|.++|||+|++ ++|.++++.+++|... .....+...|+++|++|++++++++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~--~~~~~~~~~~i~~l~~Aly~~~i~~y 157 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF--DESKEDKEEFIEDLRKALYAAKIISY 157 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S--TTS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc--ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8899999999886421 12345678899999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHHHHHHH
Q 011931 333 AQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412 (474)
Q Consensus 333 aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v~~a~~ 412 (474)
+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.||++++.|.+.+++..++|||+|..|++
T Consensus 158 aQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~ 237 (291)
T PF00393_consen 158 AQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIE 237 (291)
T ss_dssp HHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccc
Q 011931 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466 (474)
Q Consensus 413 ~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 466 (474)
.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 238 ~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 238 AGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred cCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-61 Score=438.73 Aligned_cols=298 Identities=28% Similarity=0.509 Sum_probs=270.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+||+||||.||.+|+++|.+.||+|.+||+|++.++++...+ ++.++|++++++.|..+++|.++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 6899999999999999999999999999999999999998765 467889999999999999999999999899
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.|.+|++|||.+|+.+.++.++.+.++++|++|+|++.|||..+++.|.++|+|||+++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
. | ..|
T Consensus 154 ~---------------g----------------------------e~G-------------------------------- 158 (300)
T COG1023 154 P---------------G----------------------------EDG-------------------------------- 158 (300)
T ss_pred c---------------C----------------------------cCc--------------------------------
Confidence 2 1 001
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
|. + .-+.++|||+|||||+|||+
T Consensus 159 ----yl--------------------------------------------~---------~Gp~GsGHfvKMVHNGIEYG 181 (300)
T COG1023 159 ----YL--------------------------------------------Y---------CGPSGSGHFVKMVHNGIEYG 181 (300)
T ss_pred ----cc--------------------------------------------c---------ccCCCcchhHHHHhccHHHH
Confidence 00 0 01457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
+||+|+|||+||+++ +|++|+++|+++||.|++||||||+.+.++|+++++|+.+- ..+.+ ++++ ||+|
T Consensus 182 mM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~d---SGEG--rWTv 250 (300)
T COG1023 182 MMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVSD---SGEG--RWTV 250 (300)
T ss_pred HHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceecc---CCCc--eeeh
Confidence 999999999999974 78899999999999999999999999999999998875543 33333 5677 9999
Q ss_pred HHHHHcCCChHHHHHHHH-HHHhhcCCCchhHHHHHHhhccCCccceec
Q 011931 408 CLAINSGISTPGMSSSLA-YFDSYRRERLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~-y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
++|+++|+|+|+|+.||+ +|.|.+...+..+++.|+|+.||+|..+++
T Consensus 251 ~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 251 EEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred HHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 999999999999999995 999999999999999999999999998765
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.2e-55 Score=435.60 Aligned_cols=296 Identities=29% Similarity=0.502 Sum_probs=259.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||.+|+++||+|.+|||++++++++.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 5899999999999999999999999999999999999888654 345578888887666799999999998 99
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++||+||+.+++.|.++|+||+++++++++++|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. +.++|+|
T Consensus 153 ~~~----~~~~~~G------------------------------------------------------------------ 162 (298)
T TIGR00872 153 PEE----QGYLYCG------------------------------------------------------------------ 162 (298)
T ss_pred CcC----CCEEEEC------------------------------------------------------------------
Confidence 210 0001110
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
+.++++++|++||+++++
T Consensus 163 --------------------------------------------------------------~~G~~~~~K~~~n~l~~~ 180 (298)
T TIGR00872 163 --------------------------------------------------------------PCGSGHFVKMVHNGIEYG 180 (298)
T ss_pred --------------------------------------------------------------CccHhHHHHHHHHHHHHH
Confidence 124567889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHH-HhhhhhHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEI-VDRQSAWRRV 406 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~~~~~~~ 406 (474)
+|++|+|||.|++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |...+ +++++ ||+
T Consensus 181 ~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~--r~~ 248 (298)
T TIGR00872 181 MMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FSGRVSDSGEG--RWT 248 (298)
T ss_pred HHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HHHHHHhhccH--HHH
Confidence 999999999999975 999999999999999999999999999999998875433 55443 44445 999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCC-CchhHHHHHHhhccCCccceec
Q 011931 407 VCLAINSGISTPGMSSSLAYFDSYRRE-RLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 407 v~~a~~~gip~p~~~~al~y~~~~~~~-~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
|++|+++|+|+|++++||.|++.++++ ++|+|+|||||||||+|+|+++
T Consensus 249 v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 249 VIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 999999999999999999999988888 9999999999999999999873
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=9.9e-48 Score=381.69 Aligned_cols=299 Identities=30% Similarity=0.521 Sum_probs=252.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||++|+++|++|++|||++++.+++.+.+ +..+.+++|+++.++.+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 5899999999999999999999999999999999998886543 567789999988644479999999998789
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+|++.+++.|.++|+||+++++++++++|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. +..++|+|+.|+|+.
T Consensus 154 ~~~---~~~~~~~G~~G~g~~----------------------------------------------------------- 171 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHF----------------------------------------------------------- 171 (301)
T ss_pred ccc---cCCeEeECCCcHHHH-----------------------------------------------------------
Confidence 721 012567666554443
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
+|+++|+++++
T Consensus 172 ---------------------------------------------------------------------~Kl~~n~l~~~ 182 (301)
T PRK09599 172 ---------------------------------------------------------------------VKMVHNGIEYG 182 (301)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 35555566666
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
.+++|+|+|.++++ ++|++|+++++++|+.||+++|++++....++.+++.+ +.+...++. ...+||++
T Consensus 183 ~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~~~~kd-~~~~~~~~ 251 (301)
T PRK09599 183 MMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEISGYVED-SGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHHHHHHh-hCcHHHHH
Confidence 66777777777665 57889999999999999988999999998988766432 112222222 44459999
Q ss_pred HHHHHcCCChHHHHHHHHH-HHhhcCCCchhHHHHHHhhccCCccceec
Q 011931 408 CLAINSGISTPGMSSSLAY-FDSYRRERLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~y-~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
+.|.+.|+|+|++++++.| +.++....+|.+++|+||||||+|+|+|+
T Consensus 252 ~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 252 EEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 9999999999999999986 99999999999999999999999999996
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.7e-46 Score=361.71 Aligned_cols=255 Identities=26% Similarity=0.387 Sum_probs=238.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+||||||+|.||.+||.||.++||+|++|||++++..+ +.+.+ ...+.++.|++.. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 58999999999999999999999999999999999444 44434 4678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
+++|+ +++.+.+++|.+|||+||++|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++.+++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+|.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ ..+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999987 599999999999999999999999999999999999999 9999999998 6778899999999
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
.+.+..++ |.|+|.++.+.||++ ++.+.|++.|+|+|+...
T Consensus 220 ~~~m~~~~-~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~ 260 (286)
T COG2084 220 GPRMLEGD-FSPGFAVDLMLKDLG------LALDAAKELGAPLPLTAL 260 (286)
T ss_pred cchhhcCC-CCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHH
Confidence 88777654 999999999999998 999999999999999943
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.5e-45 Score=362.17 Aligned_cols=297 Identities=33% Similarity=0.544 Sum_probs=243.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||.+|+++|++|++|||++++.+++.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999988876543 456789999987644469999999998889
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+++|++|||+||+.|.+++++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++++|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.|
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g-------------------------------- 197 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSD-------------------------------- 197 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------------------
Confidence 621 24799999999999999999999999999888877766543
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
T Consensus 198 -------------------------------------------------------------------------------- 197 (299)
T PRK12490 198 -------------------------------------------------------------------------------- 197 (299)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
|++|+++++++|+.||+++|++++...+.+.+++.. +.+ +...|-.+..+|++
T Consensus 198 --------------------~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~l-~~~~KD~~~~~l~~ 250 (299)
T PRK12490 198 --------------------FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKL------AGI-KGYVNDSGEGRWTV 250 (299)
T ss_pred --------------------cCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCCh------hhh-hHHHHhcCcHHHHH
Confidence 233444444455544455555555544444332110 001 11111222338899
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCch-hHHHHHHhhccCCcccee
Q 011931 408 CLAINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYER 454 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~y~~~~~~~~~~-~~~i~a~rd~fG~h~~~r 454 (474)
+.|.+.|+|+|.+++++.|+.....+++| .+.+|+||||||+|+|+.
T Consensus 251 ~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 251 EEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999888888999999 999999999999999974
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.2e-42 Score=326.12 Aligned_cols=261 Identities=22% Similarity=0.329 Sum_probs=241.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++|||||+|.||.+|+.+|.++||+|++|||+.++.++|.+.+. ..+.+|.|+++. +|+||.|||++.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~ 103 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPK 103 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChH
Confidence 4678999999999999999999999999999999999999998774 678999999999 999999999999
Q ss_pred hHHHHHH---HHHhcccCCCEE-EecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 86 PVDETIK---TLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
++++++. +++..+.+|... ||.||+.|..++++.+.+..++..|+|+|||||..+|++|. +||+|||++.++++.
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~ 183 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAAS 183 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHH
Confidence 9999993 466667788777 99999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHh
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~ 240 (474)
++|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|...+.+++ +.|...|+.+.
T Consensus 184 ~~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~ 252 (327)
T KOG0409|consen 184 PVFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFY 252 (327)
T ss_pred HHHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHh
Confidence 999999976 699999999999999999999999999999999999999 9999999998 56888899999
Q ss_pred hhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHH
Q 011931 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEA 294 (474)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~ 294 (474)
...+.+.+++ |.|+|.++.+.||++ ++...|.+.++|+|+.....+.
T Consensus 253 ~~~p~m~k~d-y~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA~ql 299 (327)
T KOG0409|consen 253 NPVPGMLKGD-YNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLAHQL 299 (327)
T ss_pred CcCchhhcCC-CCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHHHHH
Confidence 9888777655 999999999999998 8999999999999999443333
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.7e-40 Score=324.39 Aligned_cols=252 Identities=23% Similarity=0.337 Sum_probs=228.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||.+||++|+++||+|++|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 45555432 4567789998887 99999999999889
Q ss_pred HHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 88 DETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
++++. ++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (474)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 589999999999999999999999999999999999999 9999999987 56778899999888
Q ss_pred ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 244 ~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+..+ +|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 219 ~~~~~~-~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~ 256 (292)
T PRK15059 219 ERMIKR-TFNPGFKIALHQKDLN------LALQSAKALALNLPNT 256 (292)
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 776653 5889999999999998 9999999999999988
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=8.2e-39 Score=316.80 Aligned_cols=254 Identities=20% Similarity=0.259 Sum_probs=226.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|+..+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~ 70 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDL 70 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHH
Confidence 35899999999999999999999999999999999998887654 3567788888887 9999999999877
Q ss_pred HHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++. ++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++.+++++++
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~ 150 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPI 150 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHH
Confidence 888873 56777889999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+|.+ ++++|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ +.+...++.+...
T Consensus 151 l~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l---~~~~~~~~~~~~~ 219 (296)
T PRK15461 151 LMAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVM---SGTAAGKGHFTTT 219 (296)
T ss_pred HHHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccChHHHcc
Confidence 9999976 599999999999999999999999999999999999999 9999999988 3444445555444
Q ss_pred c-ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 243 A-DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 243 ~-~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
. +.+.. ++|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 220 ~~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~ 259 (296)
T PRK15461 220 WPNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLG 259 (296)
T ss_pred ccchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHH
Confidence 3 34444 35889999999999998 9999999999999988
No 16
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=5.6e-38 Score=360.52 Aligned_cols=254 Identities=17% Similarity=0.243 Sum_probs=236.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..+|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ ...++|+.|++++ ||+||+|+|++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45799999999999999999999999999999999999998765 4578899999998 9999999999999
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+++.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 56888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011931 161 DILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~ 239 (474)
|+|+.+|.+ +++ +|+.|+|+.+|+++|.+.+..+++++|++.++++.| ++++.+.+++ +.+.+.||++
T Consensus 154 p~l~~~g~~-------i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQK-------LYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCc-------eEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 999999976 355 599999999999999999999999999999999999 9999999998 6777889999
Q ss_pred hhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+.+.+..+ +|.++|.++.+.||++ ++++.|.+.|+|+|+.
T Consensus 223 ~~~~~~~~~~-d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~ 264 (1378)
T PLN02858 223 KNHVPLLLKD-DYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLL 264 (1378)
T ss_pred HhhhhHhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 9888766654 5889999999999998 9999999999999998
No 17
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=9.8e-38 Score=308.23 Aligned_cols=249 Identities=22% Similarity=0.293 Sum_probs=225.6
Q ss_pred EEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHH
Q 011931 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETI 91 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl 91 (474)
|||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887644 4567789999888 999999999987889998
Q ss_pred ---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011931 92 ---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 92 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++.+.+.+|++|||+||..|..++++.+.++++|++|+++||+|++.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 688888899999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc--
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-- 245 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-- 245 (474)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||....+.+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 599999999999999999999999999999999999999 9999999998 5666778877655431
Q ss_pred -----ccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 246 -----FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 246 -----l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.. ++|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 220 ~~~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~ 260 (288)
T TIGR01692 220 VMPQAPAS-NGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLG 260 (288)
T ss_pred cccccccc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHH
Confidence 122 45888999999999998 9999999999999988
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=3.2e-36 Score=298.83 Aligned_cols=254 Identities=20% Similarity=0.300 Sum_probs=228.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|+|||||+|.||.++|.+|+++|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 56899999999999999999999999999999999988776543 4566788898887 9999999998888
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++ +++.+.+.+|++|||+||..|.+++++.+.+..+|++|+++||+|++..+..|. .+++||+++.+++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 467888899999999999999999999999998999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.++.+ ++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+.+.|++++.+
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 488999999999999999999999999999999999999 9999998887 5677778888887
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.+.+..+ +|.++|.++...||++ .+++.|++.|+|+|++
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~ 259 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLT 259 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 7666543 4788999999999997 8999999999999987
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=6.3e-36 Score=295.96 Aligned_cols=253 Identities=21% Similarity=0.330 Sum_probs=228.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
||||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887654 3456788888887 999999999987888
Q ss_pred HHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHH
Q 011931 89 ETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 89 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~ 164 (474)
.++ .++.+.+.++.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 456777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 589999999999999999999999999999999999999 9999999998 456678898888877
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+..+ +|.++|.++.+.||+. ++.+.|++.|+++|+.+
T Consensus 220 ~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~ 257 (291)
T TIGR01505 220 RVIDR-TFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTA 257 (291)
T ss_pred hhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHH
Confidence 66554 4888999999999998 89999999999999883
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=4.8e-35 Score=336.43 Aligned_cols=256 Identities=18% Similarity=0.226 Sum_probs=233.1
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+.+++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.+++++++. ||+||+|||++
T Consensus 322 ~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~ 391 (1378)
T PLN02858 322 KPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANE 391 (1378)
T ss_pred cCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCCh
Confidence 4457899999999999999999999999999999999998887654 3457789999988 99999999999
Q ss_pred hhHHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCCcccccCCC-ccccCCCHHHHHH
Q 011931 85 APVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKY 158 (474)
Q Consensus 85 ~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~ 158 (474)
.++++++ .++.+.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|. ++|+||+++.+++
T Consensus 392 ~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~ 471 (1378)
T PLN02858 392 VQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKS 471 (1378)
T ss_pred HHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHH
Confidence 8999998 457788889999999999999999999999988 899999999999999999999 9999999999999
Q ss_pred HHHHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh
Q 011931 159 IEDILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSF 237 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~ 237 (474)
++++|+.++.+ +++ .|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++.+.+++ +.+.+.||
T Consensus 472 ~~plL~~lg~~-------i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~ 540 (1378)
T PLN02858 472 AGSVLSALSEK-------LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSW 540 (1378)
T ss_pred HHHHHHHHhCc-------EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCh
Confidence 99999999976 466 467999999999999999999999999999999999 9999999998 56677889
Q ss_pred hHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 238 LIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+++.+.+.+..+ +|+++|.++.+.||++ ++.+.|.+.|+|+|+.
T Consensus 541 ~~~~~~~~~l~~-d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~ 584 (1378)
T PLN02858 541 MFENRVPHMLDN-DYTPYSALDIFVKDLG------IVSREGSSRKIPLHLS 584 (1378)
T ss_pred hhhhccchhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 888777666554 5889999999999998 8999999999999998
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=1.7e-31 Score=241.71 Aligned_cols=154 Identities=28% Similarity=0.460 Sum_probs=138.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ +..+.|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 68999999999999999999999999999999999999998765 5788999999999 9999999999999
Q ss_pred HHHHHHH--HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 87 VDETIKT--LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 87 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.++++|++|+|+||+|++..+++|. ++|+||+++++++++++|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccC
Q 011931 164 LKVAAQV 170 (474)
Q Consensus 164 ~~lg~~~ 170 (474)
+.++.++
T Consensus 151 ~~~~~~v 157 (163)
T PF03446_consen 151 EAMGKNV 157 (163)
T ss_dssp HHHEEEE
T ss_pred HHHhCCc
Confidence 9999873
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=2.7e-28 Score=252.56 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=203.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 58999999999999999999999999999999999987764110 001 25566788888777
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCe-EEecCCCCCccc
Q 011931 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLL-YLGMGVSGGEEG 140 (474)
Q Consensus 73 ~~dvIil~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~v~~pvsgg~~~ 140 (474)
+|+||+|||++.. +..+++++.+.+++|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998743 777888899989999999999999999999887655444 443 567788888888
Q ss_pred ccCCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVA-AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (474)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~lg-~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l 210 (474)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 5788999999999999999997 33 5888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcc--hHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 211 ~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
|++.| +|.+++.+++. .+ +.+.. ..|.|+| ...-+.||+. +....|+++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 2355554 4445888876 7889999999999998
Q ss_pred HHH
Q 011931 289 EER 291 (474)
Q Consensus 289 ~~r 291 (474)
+.-
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 443
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.93 E-value=1.2e-24 Score=224.65 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=166.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh------------hcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN------------SIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~------------~l~~~ 74 (474)
++||+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 578999999999999999999999999999999999987643211 00 1112222211 01249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC--------------eEEe
Q 011931 75 RVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL--------------LYLG 131 (474)
Q Consensus 75 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~v~ 131 (474)
|+||+|||++ ..+..+++++.+.+++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999997 5788888999999999999999999999999999887776543 3455
Q ss_pred cC--CCCCcccccCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011931 132 MG--VSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (474)
Q Consensus 132 ~p--vsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea 207 (474)
+| +.+|...+..+. ..++|| +++..++++++|+.++.. ++++++.++|+++|+++|.+.+..+++++|+
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEG-------ECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCC-------CeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 555544444444 466788 999999999999999965 3688999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 011931 208 YDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 208 ~~l~~~~G~l~~~~~~~~~ 226 (474)
..+|++.| +|.+++.+.+
T Consensus 230 ~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHhC-CCHHHHHHHh
Confidence 99999999 9999998886
No 24
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.92 E-value=7.3e-24 Score=218.91 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=163.4
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh------------cCCCCccccCCHHHHHhhc
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK------------EGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~------------~~~~~~~~~~s~~e~~~~l 71 (474)
|...|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++..+ +..+.++.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t-~~~~~~~~- 76 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFT-SEIEKIKE- 76 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEE-eCHHHHcC-
Confidence 3455799999999999999999887 699999999999999987 3321 00 12333 33445666
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEe--------c
Q 011931 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLG--------M 132 (474)
Q Consensus 72 ~~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~v~--------~ 132 (474)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .
T Consensus 77 --advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 77 --CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred --CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 99999999988 3444445788899999999999999999999976544433 3555443 3
Q ss_pred CCCCCcccccCCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 133 GVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (474)
Q Consensus 133 pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l 210 (474)
++.+|......+. .++.|++++..+.++++++.+.... .+++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAG------TYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred cCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcC------cEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444433 5677778888899999999987321 4788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 011931 211 LKSVGKLTNEELQNVF 226 (474)
Q Consensus 211 ~~~~G~l~~~~~~~~~ 226 (474)
|++.| +|.+++.+++
T Consensus 229 ae~~G-iD~~~v~~a~ 243 (425)
T PRK15182 229 FNRLN-IDTEAVLRAA 243 (425)
T ss_pred HHHhC-cCHHHHHHHh
Confidence 99999 9999998885
No 25
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.92 E-value=1.3e-23 Score=214.56 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=162.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----------cCCCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----------EGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||+|.||.++|..|+. ||+|++||+++++++++.+.... ....+++.+.+.++++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 589999999999999987774 99999999999999988752100 000023444456777776 999
Q ss_pred EEEecCCC----------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-
Q 011931 77 IIMLVKAG----------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP- 145 (474)
Q Consensus 77 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~- 145 (474)
||+|||++ ..++++++++.. +++|++||+.||++|++++++.+.+.+.++.| +|+.+++|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999998877666544 455555553
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011931 146 --------SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 146 --------~i~~gg~~~~~~~v~~ll~~--lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G 215 (474)
.++.|++++..+++.++|.. ++..+ .+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57889888888888888854 44332 346899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 011931 216 KLTNEELQNVF 226 (474)
Q Consensus 216 ~l~~~~~~~~~ 226 (474)
+|.+++.+++
T Consensus 223 -iD~~eV~~a~ 232 (388)
T PRK15057 223 -LNTRQIIEGV 232 (388)
T ss_pred -cCHHHHHHHh
Confidence 9999999887
No 26
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=3.1e-24 Score=215.99 Aligned_cols=269 Identities=14% Similarity=0.064 Sum_probs=193.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C---CCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G---DLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~---~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+|||+|||+|.||.+||.+|+++||+|++|+|++++.+.+....... + ..++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 57999999999999999999999999999999999888877542110 0 0013456688887776 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC-Cchh--HHHHHHHHHH---cCCeEEecCCCCCcccccCCC-ccccCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYEN--TERREKAMAE---LGLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~v~~pvsgg~~~a~~G~-~i~~gg~ 152 (474)
|+|+. ++++++ +.+.++.++|+++++ .+.. .+.+.+.+.+ +++.+++.|......+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99997 566665 445678899999995 4443 5566666655 567677777554433333345 6788999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCce-EEeCC---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCV-TYVSK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~-~~~g~---------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
++.+++++++|+..+.++...+.-+ .+++. .|.+..+|+.+|.......+.++|+..++++.| ++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~~ 234 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEATF 234 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccch
Confidence 9999999999999887631000000 03443 588999999999999999999999999999999 999999
Q ss_pred HHHHHhhcc-CcchhhhHhhhc--cccccc---ccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 223 QNVFTEWNK-GELLSFLIEITA--DIFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 223 ~~~~~~~~~-~~~~s~~~~~~~--~~l~~~---~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
.+++...+- +...|+.++++. ..+..+ +++.+.|.+....+|+. .+.+.+.++++++|++..
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~ 302 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA 302 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH
Confidence 887521000 234466666553 133322 22344566666777776 888999999999998733
No 27
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.90 E-value=1.8e-23 Score=210.09 Aligned_cols=263 Identities=15% Similarity=0.116 Sum_probs=182.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
||||+|||+|.||..+|.+|+++|++|++|||++++++++.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 579999999999999999999999999999999999888876531100 0 024456677777776 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecC-CCCchhHHHHHHHHHHc-----CCeEEecCCCCCcccccCCC-ccccCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAEL-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~v~~pvsgg~~~a~~G~-~i~~gg~ 152 (474)
|||+. ++++++.++.+.+.++++||+++ +..+...+.+.+.+++. ...++.+|..+.+..+..+. .++.+++
T Consensus 78 ~v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 99984 89999999999888999999998 44444444444444442 34456667654443333334 4566779
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-----------------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G 215 (474)
.+.++++.++|+..+.++ .+... .|.+..+|+.+|.+.....+.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 157 EELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred HHHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999887642 22211 378888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCc----chhhhHhhhc--ccccccccC-----CCcchHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 011931 216 KLTNEELQNVFTEWNKGE----LLSFLIEITA--DIFGIKDDK-----GDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA 284 (474)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~----~~s~~~~~~~--~~l~~~~~~-----~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~ 284 (474)
++++.+.++.. .+. ..|+..+.+. ..+..+..+ ..+ .+....+|++ .+.+.|+++|+|
T Consensus 230 -~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~ 298 (325)
T PRK00094 230 -ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVE 298 (325)
T ss_pred -CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCC
Confidence 99999977642 111 1122221111 111111100 000 1122344444 788999999999
Q ss_pred cccHHHH
Q 011931 285 APTIEER 291 (474)
Q Consensus 285 ~p~~~~r 291 (474)
+|+.+.-
T Consensus 299 ~P~~~~~ 305 (325)
T PRK00094 299 MPITEAV 305 (325)
T ss_pred CCHHHHH
Confidence 9998443
No 28
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.89 E-value=7.8e-24 Score=203.60 Aligned_cols=116 Identities=15% Similarity=0.286 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
||||||||||||||+||+++|+|++|+...+..+ .++.+|++.|+.| .++||||++++++|++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997542211 4677778889988 589999999999999887556789999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
..-+++++ +|++++|+++|+|+|+|++||. ++++++.+|
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R 118 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEER 118 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHH
Confidence 99999999 9999999999999999999996 555555554
No 29
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=9.6e-22 Score=196.05 Aligned_cols=248 Identities=10% Similarity=0.061 Sum_probs=179.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~~ 69 (474)
+++|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...+. .++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998776543210 00000 02356678888777
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccc
Q 011931 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM 148 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~ 148 (474)
. +|+|++|+|+..+++..+ ..+.+.. ++++++.+|++ +....++++.+...+..+++.|+.+... . ....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~--~-~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYL--I-PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCccc--C-ceEEE
Confidence 6 999999999876555544 5555544 45555554444 3456677777766677788889875321 1 12335
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 149 PG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 149 ~g---g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
++ ++++.+++++++++.+|.+ ++++++.+.|+ +.|.+ ..++++|++.++++.| +|+++++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999977 48999888887 33444 4578899999999998 999999999
Q ss_pred HHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 226 FTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 226 ~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+ ..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|.+.
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~ 270 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDG 270 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhH
Confidence 7 4555556554 3343332 44667788888888876 67788888999999884
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=1.7e-21 Score=194.31 Aligned_cols=241 Identities=17% Similarity=0.167 Sum_probs=169.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+.|||+|||+|.||++||.+|+++||+|++|||++. .++++++++ +|+||+++|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~- 58 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK- 58 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-
Confidence 347899999999999999999999999999999852 256677776 99999999995
Q ss_pred hHHHHHHHHHhc-ccCCCEEEecCC-CCchhHHHHHHHHHHcCCeEEecCCC--CCccccc---CC--C-ccccCCCHHH
Q 011931 86 PVDETIKTLSAY-MEKGDCIIDGGN-EWYENTERREKAMAELGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEA 155 (474)
Q Consensus 86 ~v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~v~~pvs--gg~~~a~---~G--~-~i~~gg~~~~ 155 (474)
.++.+++++.+. +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+.
T Consensus 59 ~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~ 135 (308)
T PRK14619 59 GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAA 135 (308)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHH
Confidence 899999888774 778999999987 444444444444432 24456663 4443332 22 3 6788999999
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~-----------------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~ 218 (474)
++.++++|+..+.++ ++.++ .|.+..+|+.+|......+++++|++.++++.| ++
T Consensus 136 ~~~v~~ll~~~~~~~-------~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~ 207 (308)
T PRK14619 136 AETVQQIFSSERFRV-------YTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQ 207 (308)
T ss_pred HHHHHHHhCCCcEEE-------EecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 999999999988653 43333 234455568999999999999999999999999 99
Q ss_pred HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHH------HHhhhcCCCccHH----HHHHHHHHcCCCcccH
Q 011931 219 NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVD------KVLDKTGMKGTGK----WTVQQAADLSVAAPTI 288 (474)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~------~i~~~~~~k~tg~----~~~~~a~~~gv~~p~~ 288 (474)
++.+.++ .+.+++++.. ..+..+ +|..+|.+. .+.+.+.+..+|. .+.+.+++.|+++|++
T Consensus 208 ~~t~~~~-----~g~gd~~~t~---~~~~~r-n~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~ 278 (308)
T PRK14619 208 TETFYGL-----SGLGDLLATC---TSPLSR-NYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPIT 278 (308)
T ss_pred ccccccc-----cchhhhheee---cCCCCc-cHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHH
Confidence 9888764 2444444421 111111 133333333 3333333322222 5678899999999998
Q ss_pred HH
Q 011931 289 EE 290 (474)
Q Consensus 289 ~~ 290 (474)
..
T Consensus 279 ~~ 280 (308)
T PRK14619 279 EQ 280 (308)
T ss_pred HH
Confidence 43
No 31
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.9e-22 Score=194.56 Aligned_cols=121 Identities=13% Similarity=0.228 Sum_probs=104.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCC-CCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADL-ANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l-~~ll~ 388 (474)
+.++|||||||||||||+.||.++|.|++||..-...+ .++.+||.-||+| .+.|||++++.++|++++.. .+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 67999999999999999999999999999997433222 3455566669999 89999999999999986543 45899
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
|.+.+.+-||+++ ||+++.|+++|+|+|.|++|+. |+++++.+|.
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~ 298 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERV 298 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999 9999999999999999999996 7777776663
No 32
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.3e-19 Score=177.94 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=166.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
++|||||||.+|.++|..++++|++|+++|.++.+++.+.... ...| +++.+++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 7999999999999999999999999999999999988765311 0111 4666777776653
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeE-EecCCCCCccc
Q 011931 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLY-LGMGVSGGEEG 140 (474)
Q Consensus 73 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-v~~pvsgg~~~ 140 (474)
||++|+|||++- .+++..+.+.+.|++|++||--||++|++|+++...+.+. |..| .|..+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999872 4666778899999999999999999999999999877653 4444 24344444555
Q ss_pred ccCCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
...|. .++.|-+++..+.+..+++.+-.. ++.+.+.-.++++|+..|.++..++++++|...+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55553 244445888899999999998865 46778889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011931 212 KSVGKLTNEELQNVF 226 (474)
Q Consensus 212 ~~~G~l~~~~~~~~~ 226 (474)
++.| ++.-++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9998888876
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.84 E-value=2e-19 Score=180.46 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=156.9
Q ss_pred CcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHH-----HHHHHhhhhcCCCCccccC
Q 011931 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKKEGDLPLFGFR 62 (474)
Q Consensus 8 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~~~~~~~~~~ 62 (474)
|||.|.|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 68889998864 7889999999999999999998743 333322 356677
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHH----HcCCeEE-ecCCCC
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMA----ELGLLYL-GMGVSG 136 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~v-~~pvsg 136 (474)
++.++++. +|+||+|+|++..+++++.++.+.+.++.+|||+||+.+... +.+.+.+. ..|+++. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888877 999999999986589999999999999999999999988776 45555553 3355554 345555
Q ss_pred CcccccCCCcccc--------CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMP--------GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (474)
Q Consensus 137 g~~~a~~G~~i~~--------gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~ 208 (474)
++.+. ..++. +++++.+++++++|+.+|.+ +++++ .|.+..+|+++|.+.+..++.++|++
T Consensus 151 ae~g~---l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 151 TPQHG---HYVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred cccch---heEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 14444 44899999999999999976 46666 59999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 011931 209 DVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 209 ~l~~~~G~l~~~~~~~~~ 226 (474)
.++++.| .++.++.+-+
T Consensus 220 ~l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 220 SVGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHHhC-CCHHHHHHHH
Confidence 9999999 8888776543
No 34
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.3e-18 Score=168.98 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=185.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.+|...+..|++.||+|+++|.+++|++.+.+... ..+ ++..+++.+++++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 79999999999999999999999999999999999987764211 111 47888999999888
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccC
Q 011931 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 73 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~ 143 (474)
+|++|+|||++. .++++++.+.+.+...++||.-||+++++++++.+.+.+....= +-.|...|+..++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999999874 47788899999998889999999999999999888775542110 3344555677777
Q ss_pred CC---------ccccCCCH-HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 144 GP---------SLMPGGSF-EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (474)
Q Consensus 144 G~---------~i~~gg~~-~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~ 213 (474)
|. .+++|... .+.+.++++++.+..+ .+.+.......++++|+..|++.+.-+..++|.-.+|++
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 46778744 4678888888776432 223444556899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 214 ~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.| +|..++.+.+. .... .++ .-+...-.|++... -||.. -.+..|.++|.+.+++
T Consensus 230 ~g-~D~~~V~~gIG-lD~R-IG~-------~fl~aG~GyGGsCf----PKD~~------AL~~~a~~~~~~~~ll 284 (414)
T COG1004 230 VG-ADVKQVAEGIG-LDPR-IGN-------HFLNAGFGYGGSCF----PKDTK------ALIANAEELGYDPNLL 284 (414)
T ss_pred hC-CCHHHHHHHcC-CCch-hhH-------hhCCCCCCCCCcCC----cHhHH------HHHHHHHhcCCchHHH
Confidence 99 99999988762 1111 111 11222112333222 23332 3567899999998888
No 35
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=8.2e-21 Score=182.35 Aligned_cols=121 Identities=11% Similarity=0.171 Sum_probs=107.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++|||||||||||||+.||.++|.|++|+.+-+..+ .++++++..||.| .+.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 67999999999999999999999999999998665444 6788888889999 89999999999999877655668999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
.+.+.+-+|+++ +|+|+.|+++|+|+|+|.+|+. ++++.+.+|.
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~ 301 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERV 301 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999996 6666666653
No 36
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.81 E-value=3.2e-18 Score=178.49 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=162.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---C---------CCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---G---------DLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---~---------~~~~~~~~s~~e~~~~l~ 72 (474)
||||+|||+|.+|..+|..|+++| ++|++||+++++++.+.+..... + +.+++.+++..+.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 579999999999999999999884 78999999999999876432100 0 0025566677777776
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--C--CeEEecCC
Q 011931 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--G--LLYLGMGV 134 (474)
Q Consensus 73 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~v~~pv 134 (474)
+|++|+|||++. .++++++.+.+.++++++||..||.+|++++++...+.+. | +++..+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 4677888999999999999999999999999998877653 3 34445563
Q ss_pred CCCcccccC---CC-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 135 SGGEEGARH---GP-SLMPGGS-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 135 sgg~~~a~~---G~-~i~~gg~-----~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.-.+-.+.+ -+ .+++||. +++.++++.+++.+.... .+.+.+.-+++++|++.|++.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~------~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEE------RIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCC------CEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222221 12 4667873 335788888998886321 35667789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011931 206 EAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
|...+|++.| +|..++.+.+
T Consensus 232 Ela~lce~~g-iD~~eV~~~~ 251 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHh
Confidence 9999999999 9999988876
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.81 E-value=3.8e-18 Score=166.72 Aligned_cols=186 Identities=17% Similarity=0.198 Sum_probs=141.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.+..++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 689999999999999999999998 89999 99999887776533 5567788888877 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
+ +.+++++.++.+.+.++++||+..++.+.. .+.+.+.. . +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 589999999988888899998876654332 33333221 1 5664 77665544332222 223445889999999
Q ss_pred HHHHHHhccCCCCCCceEEe---------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 161 DILLKVAAQVPDSGPCVTYV---------SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~---------g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
++|+.+|. + +++ +..|+|.. +.+.+++.+.|+ +.+.| +++++..+++.
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~ 202 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAA 202 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999996 3 555 44677775 467788888998 78888 99999999874
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.80 E-value=1.4e-18 Score=183.61 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=146.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l 71 (474)
.+||||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ ++..++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 468999999999999999999999999999999998776532100 000 25677888888887
Q ss_pred CCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-cccc
Q 011931 72 QKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMP 149 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~ 149 (474)
||+||+|+|+..+++.. +.++.+.++++. ||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 99999999998777765 466777666665 556666655433 566666667778888886522 2345 5667
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 011931 150 GGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 150 gg~---~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~-i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+|+ ++.+++++++|+.+|.+ .++++. .+.|.+...++.. ++|++.|+++.| ++++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~-------~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMK-------PVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-------EEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 764 89999999999999976 477763 4445555555566 599999999998 999999999
Q ss_pred HH
Q 011931 226 FT 227 (474)
Q Consensus 226 ~~ 227 (474)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
No 39
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.80 E-value=2.4e-18 Score=169.26 Aligned_cols=194 Identities=13% Similarity=0.204 Sum_probs=137.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+.|||+|||+|.||.+|+.+|+++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVila 72 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLA 72 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEE
Confidence 3469999999999999999999998 78999999864 566665532 24566788888877 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEec-CCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccccc-CCCccccCCC---HH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDG-GNEWYENTERREKAMAELGLLYLG-MGVSGGEEGAR-HGPSLMPGGS---FE 154 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~-~G~~i~~gg~---~~ 154 (474)
||+. .+.+++.++.+.+.++++||++ ++..+...++ .+ ..+..++. +|. ...+. .|.+++++++ ++
T Consensus 73 v~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 73 MKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKDVPIIRAMPN---TSAAILKSATAISPSKHATAE 144 (279)
T ss_pred eCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCCCeEEEECCC---HHHHHhcccEEEeeCCCCCHH
Confidence 9985 7888889998888889999997 5554433333 22 22333333 232 22333 3446666664 67
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEE--eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTY--VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~--~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
.++.++++|+.+|......|.. ++ ++..|+|.. +.+.++..+.|+ +.+.| +++++..+++..
T Consensus 145 ~~~~v~~l~~~~G~~~~v~e~~-~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~~ 208 (279)
T PRK07679 145 HIQTAKALFETIGLVSVVEEED-MHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHHHhCCcEEEeCHHH-hhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 8899999999999753222221 14 566788775 355555566665 78888 999999999854
No 40
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=6e-18 Score=167.25 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=142.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCC----------CCccccCCHHHHHhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGD----------LPLFGFRDPESFVNS 70 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~~~----------~~~~~~~s~~e~~~~ 70 (474)
.+|+|||+|.||.+||.+|+++|++|++||+++++++++.+. +...+. .+++.+++++++++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 579999999999999999999999999999999988876532 110000 023456778777777
Q ss_pred cCCCcEEEEecCCChhHHH-HHHHHHhcccCCCEE-EecCCCCchhHHHHHHHHH-HcCCeEEecCCCCCcccccCCC-c
Q 011931 71 IQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCI-IDGGNEWYENTERREKAMA-ELGLLYLGMGVSGGEEGARHGP-S 146 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~-~~g~~~v~~pvsgg~~~a~~G~-~ 146 (474)
||+||+|+|++.+++. ++.++.+.++++.+| +++||..+....+..+... ..|+||+ +|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 9999999999877664 457788888888876 6788877654333222111 1377888 787664 4 5
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 147 LMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 147 i~~gg---~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
.+++| +++++++++++++.++.. ++++++ ..|. +.|.+.+ .+++|++.+.++.. .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~-------~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKE-------TVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67776 899999999999999987 477875 3444 3455543 56699999998865 7899998
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
No 41
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=1.4e-17 Score=168.50 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=137.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---CC-------CccccCCHHHHHhhcCCCc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---DL-------PLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~~-------~~~~~~s~~e~~~~l~~~d 75 (474)
+||||+|||+|.||+.+|..|+++||+|++|||++. .+.+.+.+.... +. ++..+++. +.+.. +|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALAT---AD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccC---CC
Confidence 467999999999999999999999999999999753 355544331100 00 01123344 33444 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec--C---CCCCccccc---CCCcc
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM--G---VSGGEEGAR---HGPSL 147 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~--p---vsgg~~~a~---~G~~i 147 (474)
+||+|||+. ++.++++.+.+.+.++++|++++++. ...+.+.+.+.. .+++.+ + +++++..+. .|. +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 67888999999998999999998865 334455555432 233332 2 333333222 333 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH--------------------HHHHHHH
Q 011931 148 MPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD--------------------MQLIAEA 207 (474)
Q Consensus 148 ~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~--------------------~~~i~Ea 207 (474)
..+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|+
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~ 222 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREA 222 (341)
T ss_pred Eec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHH
Confidence 223 235568899999988866 478899999999999999643333 3789999
Q ss_pred HHHHHHhCCCCHHHH
Q 011931 208 YDVLKSVGKLTNEEL 222 (474)
Q Consensus 208 ~~l~~~~G~l~~~~~ 222 (474)
+.++++.| ++++.+
T Consensus 223 ~~va~a~G-i~~~~~ 236 (341)
T PRK08229 223 LRVLKAAG-IRPARL 236 (341)
T ss_pred HHHHHHcC-CCcccc
Confidence 99999999 987654
No 42
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.5e-17 Score=174.08 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=145.9
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCC
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRD 63 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~~------~~~~~~~~s 63 (474)
|+.-....+|||||+|.||..||.+|+.+||+|++||++++++++. .+.+.... -.+++.+++
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 80 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA 80 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 3333345689999999999999999999999999999999988774 22221000 003567778
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEE-ecCCCCchhHHHHHHHHH--H--cCCeEEe-cCCCC
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCII-DGGNEWYENTERREKAMA--E--LGLLYLG-MGVSG 136 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~--~--~g~~~v~-~pvsg 136 (474)
++++. . ||+||.|||++.+++..+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 81 ~~~~~-~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~ 153 (507)
T PRK08268 81 LADLA-D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK 153 (507)
T ss_pred HHHhC-C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe
Confidence 87654 4 999999999999988876 56666677888884 77777654 3444433 2 3889998 77763
Q ss_pred CcccccCCCccccC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMPG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212 (474)
Q Consensus 137 g~~~a~~G~~i~~g---g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~ 212 (474)
- ..+++ +++++++++.++++.+++. ++++++ .| .+.|.+.. ..++|++.+++
T Consensus 154 L--------vEvv~g~~Ts~~~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~ 209 (507)
T PRK08268 154 L--------VEVVSGLATDPAVADALYALARAWGKT-------PVRAKDTPG------FIVNRAAR---PYYTEALRVLE 209 (507)
T ss_pred e--------EEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCCCC------hHHHHHHH---HHHHHHHHHHH
Confidence 2 34444 5899999999999999976 477875 45 36676654 47899999999
Q ss_pred HhCCCCHHHHHHHHH
Q 011931 213 SVGKLTNEELQNVFT 227 (474)
Q Consensus 213 ~~G~l~~~~~~~~~~ 227 (474)
+.+ ++++++.+++.
T Consensus 210 ~g~-~~~~~iD~al~ 223 (507)
T PRK08268 210 EGV-ADPATIDAILR 223 (507)
T ss_pred cCC-CCHHHHHHHHH
Confidence 988 99999999974
No 43
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.76 E-value=4.5e-18 Score=166.09 Aligned_cols=275 Identities=18% Similarity=0.187 Sum_probs=190.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.+...+.. + .++..+++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 478999999999999999999999999999999999998876532210 0 046678899999988 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHH-HHHHH-cC---CeEEecCCCCCcccccCCC-ccc-cCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAE-LG---LLYLGMGVSGGEEGARHGP-SLM-PGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~-~g---~~~v~~pvsgg~~~a~~G~-~i~-~gg~ 152 (474)
+||.. .+++++.++.+.+.++.+++.++.+....+.++. +.+++ .+ +.++..|- ...+-++.-| .+. .+-|
T Consensus 78 avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs-~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPS-FAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECcc-HHHHHhcCCCcEEEEecCC
Confidence 99984 8999999998899999999999988766544433 33322 13 33444442 2233344444 444 4558
Q ss_pred HHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 153 FEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++..++++.+|..=..++ ...-|+|+-++. |....+.+-.|+-.+.+...++|+..++...| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888999886522221 011134443332 55666778889999999999999999999999 77776
Q ss_pred HHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHH----HHHHHcCCCcccHHHH
Q 011931 222 LQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIEER 291 (474)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~----~~a~~~gv~~p~~~~r 291 (474)
+..+- .-|.+--.+.+.+++..+...-...+..++..+...+|.-+|..++ +.|+++++++|++++=
T Consensus 234 ~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~V 304 (329)
T COG0240 234 FMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAV 304 (329)
T ss_pred hcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 65441 1133333333333333222222233456677777778888888777 4589999999998654
No 44
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.76 E-value=1.5e-17 Score=163.69 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=134.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 58999999999999999999999999999999998888766542 2223233345555 99999999986 67
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCc-ccccCCC-ccc--------c--CCCHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGARHGP-SLM--------P--GGSFE 154 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~-~~a~~G~-~i~--------~--gg~~~ 154 (474)
..+++++.+.+.++.+|+|++++.+....... .....|++ .|+.|++ .+...+. .++ + +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 77889999989899999999998754433332 23345887 6998876 3443332 222 2 35788
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.++.++++++.+|.+ ++++++.+....++++.|...+....+++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~~ 190 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALIQ 190 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHHH
Confidence 999999999999986 47899999999999998887665544433
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.74 E-value=1.3e-16 Score=156.59 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=140.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+|||+|.||.+||..|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998887765432 12344666654 3 99999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCC----ccccc----CCC-ccccC---CC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 152 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg----~~~a~----~G~-~i~~g---g~ 152 (474)
.+.+++.++.+ +.++++|+|++++.....+.+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788889988 889999999988764443333222 23568886 99875 44333 455 44543 46
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....+++++. . .+ .+.+.+.++
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hc-CChHHHHhh
Confidence 78899999999999987 589999999999999988854 4555555554 1 24 565555444
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.74 E-value=5.1e-17 Score=171.21 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=139.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~ 68 (474)
+..+|||||+|.||..||.+|+.+||+|++||++++++++..+.. ...|. .+++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 456899999999999999999999999999999999887542210 00000 0355677887653
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEe-cCCCCchhHHHHHHHHH----HcCCeEEe-cCCCCCcccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIID-GGNEWYENTERREKAMA----ELGLLYLG-MGVSGGEEGA 141 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~----~~g~~~v~-~pvsgg~~~a 141 (474)
. ||+||.|||++.+++..+ .++...++++.+|.. +|+..+ + ++++.+. ..|+||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~----- 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA----- 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc-----
Confidence 4 999999999998888776 556666666666553 333332 2 3444442 34889998 67763
Q ss_pred cCCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011931 142 RHGPSLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (474)
Q Consensus 142 ~~G~~i~~gg---~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l 217 (474)
-..+++| ++++++.+.++++.+|+.+ +++++ .| . +.|.+. ..+++|++.++++.+ +
T Consensus 152 ---LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p-------v~v~d~pG--f----i~Nrl~---~~~~~EA~~l~e~g~-a 211 (503)
T TIGR02279 152 ---LVEVVSGLATAAEVAEQLYETALAWGKQP-------VHCHSTPG--F----IVNRVA---RPYYAEALRALEEQV-A 211 (503)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCee-------eEeCCCCC--c----HHHHHH---HHHHHHHHHHHHcCC-C
Confidence 2456677 8999999999999999874 77775 44 2 556665 368899999999988 9
Q ss_pred CHHHHHHHHH
Q 011931 218 TNEELQNVFT 227 (474)
Q Consensus 218 ~~~~~~~~~~ 227 (474)
+++++.++++
T Consensus 212 ~~~~ID~al~ 221 (503)
T TIGR02279 212 APAVLDAALR 221 (503)
T ss_pred CHHHHHHHHH
Confidence 9999999985
No 47
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.5e-16 Score=156.82 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=141.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH-----------HhhhhcC------CCCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-----------ERAKKEG------DLPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~~------~~~~~~~~s~~e~~~ 69 (474)
+.+|||||+|.||..||..|+.+|++|++||++++.+++.. +.+.... -.+++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 45899999999999999999999999999999999877632 2211000 003446777744 45
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHHhcc-cCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEe-cCCCCCcccccCC
Q 011931 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAEL--GLLYLG-MGVSGGEEGARHG 144 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~v~-~pvsgg~~~a~~G 144 (474)
. ||+||.|+|++.+++..+ ..+...+ +++.++++.|++.|.+........+++ |+||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 5 999999999999888777 4455555 789999999998876655544333444 778887 566655430
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 145 PSLMPGGSFEAYKYIEDILL-KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 145 ~~i~~gg~~~~~~~v~~ll~-~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
....++++++++++.+++. .++..+ +.+++ ..|.. .|.+ ....++|++.+.++.. .+++++.
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 2334579999999999988 588763 56654 44543 3444 4556699999998866 7899999
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=7.7e-16 Score=153.00 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=138.8
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC------CCCccccCCHHHHHhh
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG------DLPLFGFRDPESFVNS 70 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~------~~~~~~~~s~~e~~~~ 70 (474)
.....+|||||+|.||.+||.+|+.+|++|++||++++..+++.+... ..+ ..++..+++++++++.
T Consensus 4 ~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 4 ITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 344568999999999999999999999999999999987665433110 000 0035667788888877
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCCcccccCC
Q 011931 71 IQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGGEEGARHG 144 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg~~~a~~G 144 (474)
||+|+.|+|...+++..+ .++.+.++++. ||.+||+. ....++++.+... +.||+..|- ..-.
T Consensus 84 ---aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLV------ 152 (321)
T PRK07066 84 ---ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLV------ 152 (321)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceE------
Confidence 999999999998888665 77878787776 55555553 3444555555322 445554331 1111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 145 PSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 145 ~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
-++.| .+++.++.+..+++.+|.++ +.+...-.|+ +.|.+. ..+++|++.+.++.. .+++++
T Consensus 153 -EVv~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pGF----i~NRl~---~a~~~EA~~lv~eGv-as~edI 216 (321)
T PRK07066 153 -EVLGGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPGF----IADRLL---EALWREALHLVNEGV-ATTGEI 216 (321)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCccH----HHHHHH---HHHHHHHHHHHHhCC-CCHHHH
Confidence 24554 37999999999999999763 5564445555 446665 445699999999977 899999
Q ss_pred HHHHH
Q 011931 223 QNVFT 227 (474)
Q Consensus 223 ~~~~~ 227 (474)
+.++.
T Consensus 217 D~a~~ 221 (321)
T PRK07066 217 DDAIR 221 (321)
T ss_pred HHHHH
Confidence 99873
No 49
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1.8e-15 Score=151.27 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=136.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C-----C------CCccccCCHHHHHhhcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G-----D------LPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-~-----~------~~~~~~~s~~e~~~~l~~~ 74 (474)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + . .++..+++++++++. +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 46899999999999999999999999999999999887766521000 0 0 013455677777776 9
Q ss_pred cEEEEecCCChh-HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCC--
Q 011931 75 RVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGG-- 151 (474)
Q Consensus 75 dvIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg-- 151 (474)
|+||+|||+..+ ...++.++.+.++++.+|+..+++.+ ..++++.+.. ..+++.+.....+. ......+++|.
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~-~~~l~~i~~g~~t 156 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPAD-VIPLVEVVRGDKT 156 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCc-cCceEEEeCCCCC
Confidence 999999998754 45677778777766666655544433 3355555432 22334332221111 11111344443
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+++.++.++++|+.+|.. ++++++...|. +++|. ...+++|++.++++.| ++++++.+++.
T Consensus 157 ~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 157 SPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 789999999999999976 47787655555 55555 3467899999999988 99999999873
No 50
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1.2e-15 Score=151.02 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=133.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~~ 69 (474)
.++|+|||+|.||.+||.+|+++|++|++||+++++++.+.+... ..+. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 357999999999999999999999999999999998776543210 0000 02445566654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~-~pvsgg~~~a~~ 143 (474)
. +|+||+|+|+..+++ .++.++.+.++++.+|+..+++.+.. .+++.+.. .|+||++ +|++++.+
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s--~la~~~~~~~r~~g~h~~~p~~~~~~ve---- 153 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT--RLASATDRPERFIGIHFMNPVPVMKLVE---- 153 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCcccEEEeeccCCcccCceEE----
Confidence 5 999999999876655 55678888898999888433333222 45554421 2677877 45544332
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++ .+++++.++.+.++|+.+|..+ +++++.+ | +++++. ...+++|++.+..+.- .++++
T Consensus 154 ---i~~g~~t~~~~~~~~~~~~~~~gk~~-------v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~~ 214 (292)
T PRK07530 154 ---LIRGIATDEATFEAAKEFVTKLGKTI-------TVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVEA 214 (292)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHHH
Confidence 33 4579999999999999999763 6776533 3 333333 3456799999998854 58999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
+..++
T Consensus 215 iD~~~ 219 (292)
T PRK07530 215 IDTAM 219 (292)
T ss_pred HHHHH
Confidence 98886
No 51
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=149.14 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+||||||+|+||.+|+.+|.++|+ +|++|||++++++.+.+.. ++..+.+..++++. ||+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4589999999999999999999885 6999999999988876532 24556788888877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCC--CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (474)
+ +.++++++++.+.++++.+||+.-.+.+ ...+.+.+.. ..+++. +|... .....|. .+..+. +++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~-~~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDR-KLKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCC-CCcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999988863 4455555532 223333 55432 2334566 344433 5677789
Q ss_pred HHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|.....+|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++...
T Consensus 147 v~~lf~~~G~~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHcCCCEEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999754333333322222 46665 4667777777777 67778 999999888743
No 52
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.68 E-value=2.7e-15 Score=156.02 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=142.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+|+||| +|.||.++|..|.++|++|++|||++++..++.... ++..+.+..+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988766555432 24456677777776 99999999985 7
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCCC-ccccC---CCHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYKYIED 161 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G~-~i~~g---g~~~~~~~v~~ 161 (474)
+.+++.++.+.++++++|+|++++.......+.+.+ ..+..|+++ |+.|.......|. .++.. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 788999999999999999999998866666665554 347889987 8887554555676 44443 36788899999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
+|+.+|.+ ++++++... -+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~-------v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGAR-------VIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCE-------EEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 99999986 466766533 2333333333334444444443 5567 88776544
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.68 E-value=1.7e-15 Score=150.32 Aligned_cols=191 Identities=14% Similarity=0.201 Sum_probs=132.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCCC----------CccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGDL----------PLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~~~~----------~~~~~~s~~e~~~ 69 (474)
+.+|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+.. ++...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 3579999999999999999999999999999999887642211 0000000 12333444 4556
Q ss_pred hcCCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEE-ecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCII-DGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~ 143 (474)
. ||+||+|||++.+++.. +.++.+.++++.+|+ ++|+..+.. +++.+.. .|+||+++|..+.-
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~~~l----- 151 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPIMKL----- 151 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCcccCce-----
Confidence 5 99999999988777765 477888888888887 566654333 3333321 36778877765321
Q ss_pred CCcccc--CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLMP--GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~~--gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
..++. +++++.++.++++|+.+|.. ++++++ ..|. +.|.+. ..+++|++.+.++.. .++++
T Consensus 152 -veiv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g~----i~nri~---~~~~~ea~~~~~~gv-~~~~~ 214 (295)
T PLN02545 152 -VEIIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPGF----IVNRIL---MPMINEAFYALYTGV-ASKED 214 (295)
T ss_pred -EEEeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-cccH----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 12333 35899999999999999976 366665 2232 455554 445799999999876 88999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
+..++
T Consensus 215 iD~~~ 219 (295)
T PLN02545 215 IDTGM 219 (295)
T ss_pred HHHHH
Confidence 98875
No 54
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.68 E-value=1.8e-15 Score=154.55 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=141.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.+++|+||| +|.||.++|..|.++||+|++||+++. .++++++.+ ||+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 457899998 999999999999999999999998631 134556666 99999999997
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC-ccccCC-CHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYKYIED 161 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ 161 (474)
....++.++.+ +++|.+|+|+|++++.....+.+.+ ...|+ ..|+.|.+.....|. .++.++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 57778888888 8999999999998866655555432 22588 569999876666666 555555 6788999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
+++.+|++ ++++++.+....+++++ .+ .++..++++..+++ .+ .+.+.+.+
T Consensus 229 l~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999987 58999999999999997 33 56667777877766 56 77666543
No 55
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.68 E-value=1.6e-15 Score=153.19 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=174.7
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC----CC----CccccCCHHHHHhhcC
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG----DL----PLFGFRDPESFVNSIQ 72 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~----~~----~~~~~~s~~e~~~~l~ 72 (474)
|...+.+|||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+.... +. ++..+++++++++.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~-- 77 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC-- 77 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--
Confidence 455566789999999999999999999999 78999999999888876432100 00 23456677777766
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHH-HHHHHH----cCCeEEecCCCCCcccccCCC--
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAE----LGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~----~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+|+||++||+. .++++++++.+.+.++.++|.++++....+..+ .+.+++ ..+..+..|-.- .....|.
T Consensus 78 -aDlVilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a--~ev~~g~~t 153 (341)
T PRK12439 78 -ADVVVMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA--REVAEGYAA 153 (341)
T ss_pred -CCEEEEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH--HHHHcCCCe
Confidence 99999999975 899999999999988888999988876432222 222222 112233333111 1111244
Q ss_pred cccc-CCCHHHHHHHHHHHHHHhccCCC-----------CCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 146 SLMP-GGSFEAYKYIEDILLKVAAQVPD-----------SGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (474)
Q Consensus 146 ~i~~-gg~~~~~~~v~~ll~~lg~~~~~-----------~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~ 213 (474)
.+.+ +.+++..+.++++|+.-+.++.. .-++++.++ .|...-+.+..|.-...+...+.|+..++++
T Consensus 154 ~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a 232 (341)
T PRK12439 154 AAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVA 232 (341)
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 2333 34677778888888765544200 001112221 1222233444556556778899999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHH----HHHHHcCCCcccHH
Q 011931 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIE 289 (474)
Q Consensus 214 ~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~----~~a~~~gv~~p~~~ 289 (474)
.| .+++.+..+. --|.+--.+++..++..+....+..+..++.+.+.+++.-+|..++ +.++++++.+|++.
T Consensus 233 ~G-~~~~t~~gl~---G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~ 308 (341)
T PRK12439 233 MG-GNPETFAGLA---GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAR 308 (341)
T ss_pred hC-CCcccccccc---hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHH
Confidence 99 8888776542 0122222222221222111112334456777777778888887776 45889999999984
Q ss_pred HH
Q 011931 290 ER 291 (474)
Q Consensus 290 ~r 291 (474)
.=
T Consensus 309 ~~ 310 (341)
T PRK12439 309 EV 310 (341)
T ss_pred HH
Confidence 43
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.68 E-value=2.5e-15 Score=148.77 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=136.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh----------hcCCC----------CccccCCHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------KEGDL----------PLFGFRDPES 66 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----------~~~~~----------~~~~~~s~~e 66 (474)
+.+|+|||+|.||.++|..|+.+|++|++||++++.++...+... ..+.. ++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 458999999999999999999999999999999998765432110 00000 12233444 4
Q ss_pred HHhhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEe-cCCCCCccc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLG-MGVSGGEEG 140 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~-~pvsgg~~~ 140 (474)
.++. +|+||+|+|+...+ ..++.++.+.++++++|+..+++. ...++++.+... |+||++ +|++++.+
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE- 155 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE- 155 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-
Confidence 4555 99999999988654 455678888888888887666554 444555555332 677777 56766654
Q ss_pred ccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 141 ARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 141 a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
...|+ ..+++.++.+.++++.+|..+ +++++.+.....|+++| +++|++.+.++.- .+++
T Consensus 156 v~~g~----~T~~e~~~~~~~~~~~lgk~~-------v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~ 215 (291)
T PRK06035 156 VVRAA----LTSEETFNTTVELSKKIGKIP-------IEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIK 215 (291)
T ss_pred EeCCC----CCCHHHHHHHHHHHHHcCCeE-------EEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHH
Confidence 22333 128999999999999999874 77787666666566543 4589999998755 6899
Q ss_pred HHHHHH
Q 011931 221 ELQNVF 226 (474)
Q Consensus 221 ~~~~~~ 226 (474)
+++.++
T Consensus 216 ~iD~~~ 221 (291)
T PRK06035 216 DIDEMC 221 (291)
T ss_pred HHHHHH
Confidence 999886
No 57
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.66 E-value=1.6e-16 Score=165.74 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=98.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHHhCCCcchhhhHHHHHHHHhhCCCCC-C
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG---ELARIWKGGCIIRAVFLDRIKKAYDRNADLA-N 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~---~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~-~ 385 (474)
+.+++||+||+||+|+|++|++++|+|.|+++.. + +|.. ++++.|+.|. ++|+++++..++|+++++.. .
T Consensus 174 ~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g~-~~S~l~ei~~~~~~~~d~~~~~ 247 (470)
T PTZ00142 174 PGSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEGI-LNSYLIEITAKILAKKDDLGEE 247 (470)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCCC-ccCHHHHHHHHHhhcccccCCC
Confidence 4689999999999999999999999999998422 3 5554 4566699985 89999999999999875432 4
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
.++|.+.+..-+++++ ||+|++|+++|+|+|+|++||. ++++++..|.
T Consensus 248 ~~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~ 297 (470)
T PTZ00142 248 HLVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERT 297 (470)
T ss_pred cchhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHH
Confidence 7888888888899999 9999999999999999999996 4445555443
No 58
>PRK07680 late competence protein ComER; Validated
Probab=99.66 E-value=2e-15 Score=148.06 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=134.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|+|||+|.||.+++..|.++|+ +|.+|||++++.+.+.+... ++..+.+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 24566788888877 9999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC--CCHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYKYIE 160 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v~ 160 (474)
. .+.++++++.+.+.++++||+++++. ....+.+.+..+.+++++. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999898899999999865 3445555443333344432 233455677 44555 4667889999
Q ss_pred HHHHHHhccCCCCCCceEEeCCc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKG---------GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~---------g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++|+.+|.. +++.+. |+|. ++.+.++..+.++. .++.| +++++..+++..
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~p-------a~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGP-------AFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchH-------HHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 999999953 344331 3222 35555555555553 24478 999999888743
No 59
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.65 E-value=2.2e-14 Score=142.87 Aligned_cols=255 Identities=18% Similarity=0.242 Sum_probs=163.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC--CCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~~--~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 78877776533110 00 001123445555444 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccCC----C
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 152 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~gg----~ 152 (474)
|+. ++++++..+.+.+.++++||...|+. ...+.+.+.+... ++.++.+...+...-...+. .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 986 78999999999888889999888875 2333444444322 33444444333211111233 344443 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 211 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~---------------------~~~~~~i~Ea~~l~ 211 (474)
.+..+.+.++|...+.+ +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34556666777765543 234444666778888877543 34557799999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 212 KSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 212 ~~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
++.| ++ .+.+.+.+...... ......++..+..+.+. ..+|.+.. ..++.|+++|+|+|..+
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 76 33444444322111 12223345556655432 36777755 46899999999999885
Q ss_pred HH
Q 011931 290 ER 291 (474)
Q Consensus 290 ~r 291 (474)
.=
T Consensus 292 ~l 293 (305)
T PRK12921 292 TV 293 (305)
T ss_pred HH
Confidence 43
No 60
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.9e-14 Score=142.13 Aligned_cols=196 Identities=14% Similarity=0.232 Sum_probs=136.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC-----------CCCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG-----------DLPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~-----------~~~~~~~~s~~e~~ 68 (474)
+++|+|||+|.||.++|..|+.+|++|++||++++.+++..+... ..+ ..+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999987766543210 000 00345677888877
Q ss_pred hhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC--
Q 011931 69 NSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+. +.-+|+.+..... ....+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p---~~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANE---IWKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCC---CCcCCeE
Confidence 77 99999999987544 45668888888888888665555433 23333332 2334555432221 11223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 146 SLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 146 ~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
-++ .+.++++++.+.++++.+|..+ +.+.+...|..+ |.+. ..+++|++.+.++.. .+++++.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgfi~----nRi~---~~~~~ea~~l~~~g~-a~~~~iD 218 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGYIL----NSLL---VPFLSAALALWAKGV-ADPETID 218 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCHhH----HHHH---HHHHHHHHHHHHcCC-CCHHHHH
Confidence 344 3468999999999999999763 666655556543 4543 456699999999876 8899999
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 219 ~a~ 221 (287)
T PRK08293 219 KTW 221 (287)
T ss_pred HHH
Confidence 886
No 61
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.64 E-value=5.9e-14 Score=136.56 Aligned_cols=192 Identities=13% Similarity=0.162 Sum_probs=131.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|+|||||+|.||.+|++.|.+.|+. +.+|||++++.+++.+... +...+.+..+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999864 5799999999888776531 14566788888887 9999999996
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (474)
+.+.+++.++ . +.++++||++..+. +...+.+.+......+..+|+.... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56789999977654 4555555554333456677863222 234555555543 57899999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
.+|..+ ++++...-..+-.+ .+..+..+.++.++..++++.| +++++..+++..
T Consensus 142 ~lG~~~--------~~~~e~~~d~~~a~-~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~ 195 (258)
T PRK06476 142 ALGTAV--------ECDSEEEYDLLAAA-SALMATYFGILETATGWLEEQG-LKRQKARAYLAP 195 (258)
T ss_pred hcCCcE--------EECChHhccceeeh-hccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 999753 23221000000000 0122223356788888899999 999999888743
No 62
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.64 E-value=1.4e-15 Score=153.55 Aligned_cols=274 Identities=9% Similarity=0.026 Sum_probs=173.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhcC---CC----CccccCCHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKEG---DL----PLFGFRDPES 66 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~~---~~----~~~~~~s~~e 66 (474)
..+||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+.+.+.+.. +. ++..++++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3578999999999999999999998 89999999986 3555554332110 00 4566788888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHHh--cccCCCEEEecCCCCchhHH---HHHHHHHH---cCCeEEecCCCCCc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSA--YMEKGDCIIDGGNEWYENTE---RREKAMAE---LGLLYLGMGVSGGE 138 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~~---~~~~~l~~---~g~~~v~~pvsgg~ 138 (474)
+++. +|+||++||+ +.++++++++.+ .+.++.+||.++.+....+. .+.+.+.+ ..+.++..|-. ..
T Consensus 90 av~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~ 164 (365)
T PTZ00345 90 AVED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AN 164 (365)
T ss_pred HHhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HH
Confidence 8887 9999999998 489999999998 78777789988877653331 22222222 22333333422 22
Q ss_pred ccccCCC-c-cccCCCHHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 139 EGARHGP-S-LMPGGSFEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 139 ~~a~~G~-~-i~~gg~~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
+-++.-+ . .+.+-|.+..+.++++|..=..++ +..-|+++-++. |....+++-.|+-.+.+...++
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~ 243 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLE 243 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHH
Confidence 3333334 3 444558888888888886422221 111133333322 4444456678999999999999
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCC---CcchHHHHhhhc--CCCccHHHHH----
Q 011931 206 EAYDVLKSVG-KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKG---DGYLVDKVLDKT--GMKGTGKWTV---- 275 (474)
Q Consensus 206 Ea~~l~~~~G-~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~---~~~~~~~i~~~~--~~k~tg~~~~---- 275 (474)
|+..++++.| +.+++++..+.- -|.+--.+.+ ++..+....+. ++..++.+.+.+ +|+-+|..++
T Consensus 244 Em~~l~~a~g~~~~~~T~~glaG---~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~ 318 (365)
T PTZ00345 244 EMKLFGKIFFPNVMDETFFESCG---LADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVY 318 (365)
T ss_pred HHHHHHHHhCCCCCccchhccch---HhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHH
Confidence 9999999997 247777765420 0221111111 11111111111 113566666665 6788888887
Q ss_pred HHHHHcCC--CcccHHH
Q 011931 276 QQAADLSV--AAPTIEE 290 (474)
Q Consensus 276 ~~a~~~gv--~~p~~~~ 290 (474)
+.++++++ ++|++..
T Consensus 319 ~l~~~~~i~~~~Pi~~~ 335 (365)
T PTZ00345 319 EVLESHDLKKEFPLFTV 335 (365)
T ss_pred HHHHHcCCCCCCCHHHH
Confidence 66889999 8998844
No 63
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=1.9e-14 Score=141.87 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=131.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~~------~~~~~~~~s~~e~~~ 69 (474)
++||+|||+|.||.++|..|+++|++|++||++++++++. .+.+.... ..+++.+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5689999999999999999999999999999999987532 22210000 002344556554 45
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEe-cCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLG-MGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~-~pvsgg~~~a~~ 143 (474)
. ||+||+|+|+...++ +++.++.+.++++++|+..+++.+. ..+++.+..+ ++||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI--TELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 5 999999999876655 7778898889888888555554432 2555555321 344444 23333322
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++ .+++++.++.+.++|+.+|.. +++++. ..|. +.|.+. ..+++|+..+.++.- .++++
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~d 213 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAED 213 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHH
Confidence 33 346899999999999999976 466654 4444 345554 456699999998866 78999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
++.++
T Consensus 214 iD~~~ 218 (282)
T PRK05808 214 IDEGM 218 (282)
T ss_pred HHHHH
Confidence 98886
No 64
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=7.5e-14 Score=136.49 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=133.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|+|||+|.||..++..|.++| ++|.+|||++++.+++.+.. ++..+.+.+++++. +|+||+|+|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 3679999999999999999999999 78999999999888776642 14456778887776 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCC--CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (474)
+. .+.++++.+.+.+ +++||+++++.+.. .+.+.+ ..+.+++. +|. .+.....|. .++++. +++.++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~-~~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLL-GADLPVVRAMPN--TPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhc-CCCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999988876 57888888876433 333333 23445554 242 222233444 355553 8899999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCchhHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSKGGSGNFVK-MIHN--GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW 229 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K-~v~N--~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~ 229 (474)
++.+|+.+|.. +++.+...-+.+- +..+ ++.+.+++.+.++ +.+.| +++++..+++..+
T Consensus 144 v~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~G-l~~~~a~~~~~~~ 205 (267)
T PRK11880 144 VENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLG-LPREQARKLAAQT 205 (267)
T ss_pred HHHHHHhCCeE--------EEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH
Confidence 99999999963 4554322112211 1111 2333344444433 66678 9999988887543
No 65
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.63 E-value=4.1e-14 Score=137.15 Aligned_cols=194 Identities=10% Similarity=0.091 Sum_probs=133.8
Q ss_pred CcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHHH-----HHHHhhhhcCCCCccccC
Q 011931 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKKEGDLPLFGFR 62 (474)
Q Consensus 8 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~~~~~~~~~~ 62 (474)
|||.|.|+|+- |.+||++|+++||+|++|||++++.+ .+.+.+ +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 68899999864 78999999999999999999987653 344433 56788
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHH---HHHcCCeEEe---cCCCC
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA---MAELGLLYLG---MGVSG 136 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~---l~~~g~~~v~---~pvsg 136 (474)
++.++++. +|+||+|+|++.++++++.++.+.+.+|++|||+||+.|.......+. +.++.+...+ +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988777654 3333443333 33333
Q ss_pred CcccccCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (474)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~ 208 (474)
.+. ++-.++.| .++|..+++.++.++.+... +.+...=.+...-|. ....+...+.+.+-+
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~-------~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~ 219 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKA-------YVVPADVTSAVADMG-SLVTAVALAGVLDYY 219 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHH
Confidence 221 22222222 27889999999999988753 333322223333332 123334455566666
Q ss_pred HHHHHhCCCCHHHH
Q 011931 209 DVLKSVGKLTNEEL 222 (474)
Q Consensus 209 ~l~~~~G~l~~~~~ 222 (474)
..+.+.-|.+.+-+
T Consensus 220 ~~~t~i~~ap~~~~ 233 (341)
T TIGR01724 220 YVGTQIINAPKEMI 233 (341)
T ss_pred HHHHHHhcCcHHHH
Confidence 66755543554433
No 66
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.63 E-value=5e-16 Score=162.03 Aligned_cols=114 Identities=11% Similarity=0.195 Sum_probs=95.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW-DLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~-~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~ 388 (474)
+.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|+++++...+|++++.....++
T Consensus 171 ~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l 246 (467)
T TIGR00873 171 PDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLV 246 (467)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccH
Confidence 4689999999999999999999999999997532 32 12445566778987 6899999999999998544446788
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHh
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDS 429 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~ 429 (474)
|.+.+..-+++++ ||+|++|+++|+|+|+|++++. ++.+
T Consensus 247 ~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S 286 (467)
T TIGR00873 247 DKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLS 286 (467)
T ss_pred HhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhcc
Confidence 8888888889999 9999999999999999999996 4444
No 67
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.1e-15 Score=140.44 Aligned_cols=188 Identities=32% Similarity=0.500 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccC
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~ 143 (474)
++++...|+.-|+||=--.. ..++.+..-...-.+|--++|++|+--..- .++|..+ +.||++.+-+
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHH
Confidence 34555556668988866543 455566554445567889999998752111 2345443 3455544322
Q ss_pred CC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 144 GP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 144 G~-~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
-- .++ +.+.+ ...| ..|+|+.|+||++|||||+|+|++||+++|.+.++++.- .|.+ +
T Consensus 144 ~~~pif--------~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~ 202 (300)
T COG1023 144 RLEPIF--------KALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-L 202 (300)
T ss_pred HHHHHH--------HhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-H
Confidence 21 111 11100 0234 368999999999999999999999999999999999865 5532 3
Q ss_pred HHHHHhhccC-cchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHH
Q 011931 223 QNVFTEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEER 291 (474)
Q Consensus 223 ~~~~~~~~~~-~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r 291 (474)
.++.+.|+.| ..+||+++.+...+++ + .-++.+.+.+..-|+|+||+++|.++|+|+|++...
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~a 266 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALA 266 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHH
Confidence 3344458885 5789999999887764 2 257888888888999999999999999999999443
No 68
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.62 E-value=1.8e-15 Score=151.83 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=170.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHhhhhcC---CC----CccccCCHHHHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKKEG---DL----PLFGFRDPESFV 68 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~~---~~----~~~~~~s~~e~~ 68 (474)
||+|||.|.||++||..|+++| |+|.+|.| +++-.+.+.+...+.. +. +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5554554443321110 00 345667888888
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh--HHHH-HHHHHH---cCCeEEecCCCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TERR-EKAMAE---LGLLYLGMGVSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~~~-~~~l~~---~g~~~v~~pvsgg~~~a~ 142 (474)
+. +|+||++||+. .+++++.++.+.++++.++|.++.+.... +..+ .+.+++ ..+.++..|..- .+-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 99999999985 89999999999999899999998876544 3222 222222 223333334222 23333
Q ss_pred CCC-ccc-cCCC----HHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 143 HGP-SLM-PGGS----FEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 143 ~G~-~i~-~gg~----~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.-| .+. .+.+ .+..+.++.+|..=-.++ +..-|+++-++. |....+.+-.|+-.+.+...++
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 334 333 4446 788888888886322211 011123333322 3444455677999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhcccccccccCCC-cchHHHHhhh--cCCCccHHHHHHH---
Q 011931 206 EAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQQ--- 277 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~-~~~~~~i~~~--~~~k~tg~~~~~~--- 277 (474)
|+..+++..| -+++ .+..+ .|.++-.+.-..++..+....+.. +..++.+.+. .+++-+|..+++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 6665 55433 121111110000111111111233 4567777777 6788888887754
Q ss_pred -HHHcCCC--cccHHHH
Q 011931 278 -AADLSVA--APTIEER 291 (474)
Q Consensus 278 -a~~~gv~--~p~~~~r 291 (474)
+++.++. +|++..=
T Consensus 309 l~~~~~i~~~~Pi~~~v 325 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV 325 (342)
T ss_pred HHHHcCCCcCCCHHHHH
Confidence 8889999 9988554
No 69
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.62 E-value=4.7e-14 Score=140.36 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=152.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh--cCCC--CccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK--EGDL--PLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~~~~--~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|||+|||+|.||+.+|..|+++|++|++++|++++.+.+.+.+.. .+.. .+..+.+++++ +. +|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GP---QDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CC---CCEEEEeccc
Confidence 589999999999999999999999999999998888777654321 0000 01223445444 44 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC----CeEEecCCCCCcccccCCC-ccccCC---CHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 155 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~v~~pvsgg~~~a~~G~-~i~~gg---~~~~ 155 (474)
. +++.++..+.+.+.++++||...|+.. ..+.+.+.+.... +.++.+-..+.......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999988889999888752 2333444332221 1122211111111111122 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~~i~Ea~~l~~~~ 214 (474)
.+.+.++|+..+.+. ...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~~-------~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLDV-------EWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCCC-------CCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 566777777655432 222234445555555442 3344567789999999998
Q ss_pred CCCCH--HHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 215 GKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 215 G~l~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
| ++. +.+.+.+........ ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+.
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~-~~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTA-ANTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccC-CCCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 653 444444433222111 122345555554332 34565543 578999999999998743
No 70
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.61 E-value=8.9e-16 Score=159.48 Aligned_cols=117 Identities=13% Similarity=0.211 Sum_probs=96.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhhCCC-CCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNAD-LAN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iW~~gcii~s~ll~~~~~~~~~~~~-l~~ 385 (474)
+.++|||+||+||+|+|++|+.++|+|.++++.. + +|. .++++.|+.|. ++|+++++..+++.+++. ...
T Consensus 163 ~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g~-~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 163 PDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKGE-LNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCC-ccChHHHhHhHHHhcCCCCCCC
Confidence 4689999999999999999999999999999521 3 555 45566799985 899999999999987542 345
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHh-hcCCC
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDS-YRRER 434 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~-~~~~~ 434 (474)
.++|.+.+..-+|+++ ||+|++|+++|+|+|+|++|+. ++.+ ++..|
T Consensus 237 ~~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r 285 (459)
T PRK09287 237 PLVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQR 285 (459)
T ss_pred cchHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHH
Confidence 7889999999999999 9999999999999999999996 4443 34433
No 71
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.4e-14 Score=137.52 Aligned_cols=193 Identities=22% Similarity=0.278 Sum_probs=143.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|++|||||.|+||.+|+..|.++| .+|.+.||++++.+.+.+... +..+++.++++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 578999999999999999999999 589999999999987766542 3346778889888 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccC--CCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~g--g~~~~~~~ 158 (474)
+ +.+++++.++.+ ..++++||+...+.+ ...+...+. +.+++. +|.. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999988 778999999888763 444555554 455554 4643 23334566 34443 36788889
Q ss_pred HHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+..+|+.+|.....+|..+..+. -.|+|. ++.+.+++.+.++ +.+.| ++.++..++..
T Consensus 144 v~~l~~~~G~v~~v~E~~~da~TaisGSgP-------Ayv~~~iEal~~a---gv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGKVVEVEESLMDAVTALSGSGP-------AYVFLFIEALADA---GVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCCeEEechHHhhHHHHHhcCCH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999975433333332222 246666 4666677777776 67788 99999988864
No 72
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.61 E-value=3.4e-14 Score=141.78 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=122.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+.++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|+|.
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiavp~ 76 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCVPV 76 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECCCH
Confidence 45789999999999999999999995 89999999988877665432 12344567777766 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc-cccC-------CC-ccc---cC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARH-------GP-SLM---PG 150 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~-~a~~-------G~-~i~---~g 150 (474)
. ....++.++.+.++++.+|+|.++......+.+.+.+ ..+++|+++ |+.|++. +... |. .++ .+
T Consensus 77 ~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~ 154 (307)
T PRK07502 77 G-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG 154 (307)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC
Confidence 6 6788888888889999999999888755544444333 346789986 8887653 2222 22 222 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~ 187 (474)
++++.++.++++++.+|.+ ++++++.....
T Consensus 155 ~~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD~ 184 (307)
T PRK07502 155 TDPAAVARLTAFWRALGAR-------VEEMDPEHHDL 184 (307)
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHhH
Confidence 6888999999999999986 46666644333
No 73
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.58 E-value=6.9e-14 Score=140.75 Aligned_cols=203 Identities=12% Similarity=0.105 Sum_probs=125.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C-C--CCccccCCHHHHH-hhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G-D--LPLFGFRDPESFV-NSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~-~--~~~~~~~s~~e~~-~~l~~~dvIil 79 (474)
|||+|||+|.||+.+|..|+++|++|++|+|+++.++.+.+.+... + . .++..++++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 5899999999999999999999999999999998888777642110 0 0 0233455666665 34 899999
Q ss_pred ecCCChhHHHHHHHHHh-cccCCCEEEecCCCCchh-----HHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccc-cCC
Q 011931 80 LVKAGAPVDETIKTLSA-YMEKGDCIIDGGNEWYEN-----TERREKAMAELGLLYLGMGVSGGEEGARHGP-SLM-PGG 151 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~-~gg 151 (474)
+||+. +++++++++.+ .+.++..|+.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+. .|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99985 89999999998 888777777777776332 1222222222222222223110 12223334 333 344
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHh
Q 011931 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N-----------------~~~~~~~~~i~Ea~~l~~~~ 214 (474)
+.+..+.+..+|..-+.+ +....+.-...+.|++-| .....+.+++.|+..++++.
T Consensus 156 ~~~~~~~l~~~l~~~~~~-------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NETLGSSLISKLSNENLK-------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CHHHHHHHHHHHCCCCeE-------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 555445555555443322 122222333334454444 34445678899999999999
Q ss_pred CCC--CHHHHH
Q 011931 215 GKL--TNEELQ 223 (474)
Q Consensus 215 G~l--~~~~~~ 223 (474)
| . +++++.
T Consensus 229 G-~~~~~~~~~ 238 (326)
T PRK14620 229 N-GSIDLNTLI 238 (326)
T ss_pred C-CCCCcchhh
Confidence 8 6 677774
No 74
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.57 E-value=2.5e-14 Score=131.74 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=87.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...+ ++..+++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 7999999999999999999999999999999999988765321 1111 56788888988888
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHH-HHHHcC-----CeEEecC
Q 011931 73 KPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK-AMAELG-----LLYLGMG 133 (474)
Q Consensus 73 ~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~-~l~~~g-----~~~v~~p 133 (474)
+|++|+|||++ ..++++++.+.+.++++++||..||..|++++++.. .+++.+ +++.-+|
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 99999999876 247888899999999999999999999999996654 444332 3455556
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=2e-13 Score=139.04 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=132.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||+|.||.+||+.|.++|++|.+|++++++.+.....+... --...++++++++. ||+||+|||+. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3699999999999999999999999999999877654433322100 01134566777776 99999999985 78
Q ss_pred HHHHHHHHh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcc-c-------ccCCC-ccccC---CCH
Q 011931 88 DETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 153 (474)
Q Consensus 88 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~-~-------a~~G~-~i~~g---g~~ 153 (474)
..++.++.+ .++++.+|+|.++++........+. ...+.+|++ .|+.|++. + ...|. .+++. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999886555444443 335678998 58888642 1 12344 33332 478
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+.++.++++++.+|++ ++++.+......+-++... -.++++++ +...+ .+.+...++
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vshl-----Ph~ia~al--~~~~~-~~~~~~~~l 209 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVSHL-----PHILASSL--AARLA-GEHPLALRL 209 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhccH-----HHHHHHHH--HHhhc-cCchHHHhh
Confidence 8999999999999976 4667665544444333322 23344443 45555 555444433
No 76
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.54 E-value=9.1e-13 Score=131.84 Aligned_cols=255 Identities=14% Similarity=0.134 Sum_probs=155.9
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cCCC---CccccCCHHHHHhhcCCCcEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK----EGDL---PLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~~~---~~~~~~s~~e~~~~l~~~dvI 77 (474)
+++|+|+|||+|.||+.+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+...++++ ... .+|+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~~D~v 76 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMP---PCDWV 76 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchh-hcC---CCCEE
Confidence 3457999999999999999999999999999999863 334333211 0000 011122222 223 38999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccC--
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPG-- 150 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~g-- 150 (474)
|+|||.. ++.+++..+.+.+.++.+|+...|+. ...+.+.+.+.+. ++.++++...+...-...|. .+.+|
T Consensus 77 ilavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 77 LVGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999986 67888899999898889999998886 3334444444322 23333333222111111222 22222
Q ss_pred -C-C-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHH
Q 011931 151 -G-S-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQ 202 (474)
Q Consensus 151 -g-~-----~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~ 202 (474)
+ + .+..+.+..+|+..+... ....+.-..-+.|++.|. .......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~ 227 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDS-------QAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRA 227 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCc-------eeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHH
Confidence 2 2 355666777787766542 333445555566665552 3345667
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHH
Q 011931 203 LIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 280 (474)
Q Consensus 203 ~i~Ea~~l~~~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~ 280 (474)
++.|++.++++.| ++ .+.+..+++...... ....++.+++.+.+. ..+|.+.. +.++.|++
T Consensus 228 ~~~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~ 290 (313)
T PRK06249 228 LMAEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARA 290 (313)
T ss_pred HHHHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHH
Confidence 8999999999998 76 233333332222211 223455566655432 46788765 57999999
Q ss_pred cCCCcccHHHH
Q 011931 281 LSVAAPTIEER 291 (474)
Q Consensus 281 ~gv~~p~~~~r 291 (474)
+|+|+|..+.=
T Consensus 291 ~Gi~~P~~~~l 301 (313)
T PRK06249 291 AGCAMPRVEML 301 (313)
T ss_pred hCCCCcHHHHH
Confidence 99999987443
No 77
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=3e-13 Score=132.85 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=136.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ....+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 578999999999999999999998 7899999864 44555443321 13345677888777 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccC--CCHHHHH
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYK 157 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~ 157 (474)
|+. .+.+++.++.+.+.++.+||+..++... .++.+.+. +..++. +|.. +.....|.+ +..+ -+++..+
T Consensus 73 pp~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~--~~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PPL-AVLPLLKDCAPVLTPDRHVVSIAAGVSL--DDLLEITP--GLQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCH--HHHHHHcC--CCCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 974 7999999999988888899998888643 35555443 223433 4533 223345663 4443 2567788
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 158 YIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 158 ~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
.++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.||+++++..+++.
T Consensus 146 ~v~~l~~~~G~~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 146 RLEETLSHFSHVMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHhCCCEEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHH
Confidence 9999999999865444544433332 57777 3555666666666 55662399999888864
No 78
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=2.1e-13 Score=131.54 Aligned_cols=194 Identities=17% Similarity=0.138 Sum_probs=131.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC---c-EEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|||+|.||.+++..|+++|+ + +.+++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 778887 477777776543 24556788888877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC-ccc--cCCCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLM--PGGSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~-~i~--~gg~~~~~~~ 158 (474)
+. ..+++++++.+.++ +++||+++.+.... .+.+.+. .+..++ .+|-.. .....|. .+. ..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPS--YLEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHH--HHHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78999998888775 67999998886443 3444332 222333 345322 2233444 222 3468889999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|......|........ .|++ .++.+.++..+.++ +.+.| +++++..+++..
T Consensus 149 v~~lf~~~G~~~~~~e~~~~~~~a~~gs~-------pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 149 LQLILKGIGTSQLCTEEEVHQLTAVTGSA-------PAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHhCCCEEEECHHHcchHHhhhcch-------HHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999753222222221111 2333 24555666666666 67788 999999888743
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.51 E-value=2.3e-12 Score=127.81 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKA 83 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~vp~ 83 (474)
..+++|+|||+|.||..+|..|.+.|++|++||+++.. +...+. ++..+.+.++++ .. +|+||+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~~---aDvVilavp~ 102 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEEH---PDVVLLCTSI 102 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhCC---CCEEEEecCH
Confidence 34578999999999999999999999999999999642 222221 244566777775 34 8999999998
Q ss_pred ChhHHHHHHHH-HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccc--ccCCCcc-cc-------CC
Q 011931 84 GAPVDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEG--ARHGPSL-MP-------GG 151 (474)
Q Consensus 84 ~~~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~--a~~G~~i-~~-------gg 151 (474)
. .+.+++.++ .+.++++.+|+|.++++-.....+.+.+. .+..|+. +|+.|.+.+ ...+..+ .. +.
T Consensus 103 ~-~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~ 180 (304)
T PLN02256 103 L-STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGE 180 (304)
T ss_pred H-HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCC
Confidence 5 788899888 67788999999999976544444444432 3567887 488877643 2233322 22 23
Q ss_pred CHHHHHHHHHHHHHHhccC
Q 011931 152 SFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~ 170 (474)
+++.++.++++++.+|+++
T Consensus 181 ~~~~~~~l~~l~~~lGa~v 199 (304)
T PLN02256 181 REARCERFLDIFEEEGCRM 199 (304)
T ss_pred CHHHHHHHHHHHHHCCCEE
Confidence 6788999999999999873
No 80
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.50 E-value=4.8e-13 Score=133.34 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHH-------HHHHHHh-------hhhcCC----------CCccccCC--HHHHHhhc
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKKEGD----------LPLFGFRD--PESFVNSI 71 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~~-------~~~~~~----------~~~~~~~s--~~e~~~~l 71 (474)
||..||..++.+|++|++||++++. +++..+. ....+. -+++.+++ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 2211111 000000 03444443 5576776
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEecC-------CCCCcc
Q 011931 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLGMG-------VSGGEE 139 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~v~~p-------vsgg~~ 139 (474)
||+||.|||.+.+++..+ .++.+.++++.|| +||+++....++++.+. ..|+||++.| |++++
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888766 6788888888888 44554456667777662 3478888887 54443
Q ss_pred cccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 140 GARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 140 ~a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
+++++.++++.++++.+|.. ++++++.+ |.. .|. ....+++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~-------~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKV-------PVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCc-------EEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCH
Confidence 57899999999999999977 47888754 542 233 46678899999999988 999
Q ss_pred HHHHHHH
Q 011931 220 EELQNVF 226 (474)
Q Consensus 220 ~~~~~~~ 226 (474)
+++.+++
T Consensus 209 e~iD~a~ 215 (314)
T PRK08269 209 EDIDKAI 215 (314)
T ss_pred HHHHHHH
Confidence 9999987
No 81
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.49 E-value=1.6e-12 Score=126.67 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=111.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCH-HHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDP-ESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~~s~-~e~~~~l~~~dvIil~vp 82 (474)
.+++|+|+|+|.||+++|+.|.++|+.|.+++++... .+...+.+.. ...+.+. .+.+.. +|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-----d~~~~~~~~~~~~~---aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-----DELTVAGLAEAAAE---ADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-----cccccchhhhhccc---CCEEEEecc
Confidence 4678999999999999999999999998777666543 3332222210 1112222 444444 899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCc--ccccCCC-c-cccCC--CHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE--EGARHGP-S-LMPGG--SFEA 155 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~--~~a~~G~-~-i~~gg--~~~~ 155 (474)
-. .+..+++++.+.+++|.+|+|.+++.....+...+.+.+.. +|++. |+.|.+ ..-.++. . ++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 86 88999999999999999999999998666655555554434 89885 787773 3334555 3 34443 4678
Q ss_pred HHHHHHHHHHHhcc
Q 011931 156 YKYIEDILLKVAAQ 169 (474)
Q Consensus 156 ~~~v~~ll~~lg~~ 169 (474)
++.+..+++.+|++
T Consensus 152 ~~~~~~~~~~~ga~ 165 (279)
T COG0287 152 VEEVKRLWEALGAR 165 (279)
T ss_pred HHHHHHHHHHcCCE
Confidence 89999999999987
No 82
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.47 E-value=1.1e-12 Score=124.41 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=112.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C--CCCcc-ccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G--DLPLF-GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-~--~~~~~-~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+||| +|.||+.++..|+++|++|.+++|++++.+.+.+..... + +.... ...+..+.++. +|+||+|+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 999999999999999999999999999988776542110 0 00011 12356677776 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchh---------------HHHHHHHHHHcCCeEEec-C-----CCCCcccc
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---------------TERREKAMAELGLLYLGM-G-----VSGGEEGA 141 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~v~~-p-----vsgg~~~a 141 (474)
+. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+++.+ + +..+ ...
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence 85 78888888877665 58999999886531 1333343321 1344432 2 2222 111
Q ss_pred cCCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHH
Q 011931 142 RHGP-SLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 142 ~~G~-~i~~gg~~~~~~~v~~ll~~l-g~~~~~~~~~~~~~g~~g~g~ 187 (474)
..+. .+++|.|+++.+.+..|.+.+ |..+ +.+|+...+-
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~a~ 194 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLENAA 194 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhhHH
Confidence 1233 566677788889999999999 8874 7777754443
No 83
>PLN02712 arogenate dehydrogenase
Probab=99.46 E-value=5e-12 Score=137.55 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=109.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-hcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-SIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~-~l~~~dvIil~vp~~ 84 (474)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.+.++++. . +|+||+|||+.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~~---aDvVILavP~~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEEH---PEVILLCTSIL 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhcC---CCEEEECCChH
Confidence 4579999999999999999999999999999999643 333322 2445667888764 4 89999999974
Q ss_pred hhHHHHHHHHHh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC---c-----cccCCCHH
Q 011931 85 APVDETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFE 154 (474)
Q Consensus 85 ~~v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~---~-----i~~gg~~~ 154 (474)
.+..+++++.. .+++|.+|+|++++.. ...+..+.+...++.|+ .+|+.|.+.+ ..|. . .+++++.+
T Consensus 437 -~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~ 513 (667)
T PLN02712 437 -STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDR 513 (667)
T ss_pred -HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcc
Confidence 78888988875 5788999999999973 33344444444577888 5799987754 2331 1 23445544
Q ss_pred HH---HHHHHHHHHHhcc
Q 011931 155 AY---KYIEDILLKVAAQ 169 (474)
Q Consensus 155 ~~---~~v~~ll~~lg~~ 169 (474)
.. +.+..+++.+|++
T Consensus 514 ~~~~~~~l~~l~~~lGa~ 531 (667)
T PLN02712 514 RVSRCDSFLDIFAREGCR 531 (667)
T ss_pred hHHHHHHHHHHHHHcCCE
Confidence 44 4456888888876
No 84
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.46 E-value=2.3e-12 Score=126.29 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=130.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~~----------~~~~~~s~~e~~ 68 (474)
+.++|||||+|.||..+|..++..||+|+++|++++.+++...... ..|.. +++.++++.+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~-- 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA-- 79 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH--
Confidence 4578999999999999999999988999999999876554432211 00000 3444444442
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecCC-CCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMGV-SGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~v~~pv-sgg~~~a~ 142 (474)
++.||+||.+|+....++. ++.++-...+++.|+-..+++.+.+ ++++.+.. + |+||++.|. +.-.
T Consensus 80 --l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV---- 151 (307)
T COG1250 80 --LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV---- 151 (307)
T ss_pred --hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE----
Confidence 3349999999999988774 4577777777888886666655443 34444421 1 566665432 1111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .+++.++.+..+.+.+++. + .+...-.|..+ |.+ ...++.|++.+..+.. .+++
T Consensus 152 ---EvI~g~~T~~e~~~~~~~~~~~igK~-------~-vv~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e 212 (307)
T COG1250 152 ---EVIRGEKTSDETVERVVEFAKKIGKT-------P-VVVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPE 212 (307)
T ss_pred ---EEecCCCCCHHHHHHHHHHHHHcCCC-------C-EeecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHH
Confidence 13444 3789999999999999943 1 33333445543 554 4566699999999987 9999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
++..++.
T Consensus 213 ~ID~~~~ 219 (307)
T COG1250 213 EIDAAMR 219 (307)
T ss_pred HHHHHHH
Confidence 9999874
No 85
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.46 E-value=3.8e-13 Score=110.38 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=77.1
Q ss_pred cEEEEcccHhHHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||||||.|+||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999944 999999999987653 34444 79999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
. .+.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 899999999 77889999999876
No 86
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.44 E-value=3.3e-12 Score=124.38 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=125.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.|||+|||+|.||++++..|.+++. +++++||++++. + ...+.++.++++. +|+||+|+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-------~~~~~~~~~~~~~---~D~Vilavk 66 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-------FVYLQSNEELAKT---CDIIVLAVK 66 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-------eEEeCChHHHHHh---CCEEEEEeC
Confidence 4789999999999999999999873 499999987542 1 2345677787777 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccC--CCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~~ 158 (474)
+. .+++++.++.+.+.++.+|.++++.... .+.+.+.. ....+. +| +.+.....|.+ +..+ .+++..+.
T Consensus 67 p~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~---~l~~~~~~-~~~vvr~mP--n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 67 PD-LAGKVLLEIKPYLGSKLLISICGGLNLK---TLEEMVGV-EAKIVRVMP--NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred HH-HHHHHHHHHHhhccCCEEEEEeCCccHH---HHHHHcCC-CCeEEEECC--CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 75 8999999999888765555555555422 22332321 111221 23 11223334553 3333 25677889
Q ss_pred HHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|......|..+.... -.|+|. ++.+.++..+.++ +.+.| ++.++..++...
T Consensus 140 v~~l~~~~G~~~~v~E~~~d~~ta~~gsgP-------A~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~ 199 (260)
T PTZ00431 140 VIDIFSACGIIQEIKEKDMDIATAISGCGP-------AYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ 199 (260)
T ss_pred HHHHHHhCCcEEEEChHHcchhhhhcCCHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 99999999975433344333222 246665 4667777777777 67788 999999888743
No 87
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.43 E-value=3.5e-12 Score=127.06 Aligned_cols=253 Identities=12% Similarity=0.090 Sum_probs=152.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-h---cCCC-Cccc-cCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-K---EGDL-PLFG-FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~---~~~~-~~~~-~~s~~e~~~~l~~~dvIil~ 80 (474)
.|||+|||+|.||+-+|..|++.|++|++++|++++++.+.+.+. . .+.. .... ..+.++ ++.+|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~----~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA----AEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc----ccccCEEEEE
Confidence 478999999999999999999999999999999888887765421 0 0000 0001 111111 2348999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-CcccccCCC-ccccCC-CH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 153 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsg-g~~~a~~G~-~i~~gg-~~ 153 (474)
|+.. ++++++..+.+.+.++++|+..-|+.. ..+.+.+.+... |+.++++...+ |.. ...|. .+.+|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~-~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLG-SQDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCC-CHHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9986 788999999999999999999999873 333344444221 11222221111 110 11122 122332 22
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhC
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~------------------~~~~~~i~Ea~~l~~~~G 215 (474)
+..+++.++|...+.+. .+..+.-...+-|++.|... ..+.+++.|+..++++.|
T Consensus 155 ~~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 155 PTAPAWLDDLREAGIPH-------EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred cchHHHHHHHHhcCCCC-------ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 34455666676655431 23333455566777666321 134677899999999998
Q ss_pred CCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 216 KLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 216 ~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
++ .+.+.+.+........ ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~ 287 (305)
T PRK05708 228 -QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQ 287 (305)
T ss_pred -CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHH
Confidence 75 2333333322111111 123455566655432 45677654 57899999999999883
No 88
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.43 E-value=1.7e-12 Score=119.13 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
||+|+|+|.|+||.++|++|++.||+|.+-+|+.+ +.+...+.... .+ ...+.+++++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~i-~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----LI-TGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----cc-ccCChHHHHhc---CCEEEEeccHH-
Confidence 68999999999999999999999999999966644 44444443321 22 34577888887 99999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCc---h------------hHHHHHHHHHHc----CCeEEecCCCCCcccccC-CC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWY---E------------NTERREKAMAEL----GLLYLGMGVSGGEEGARH-GP 145 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~---~------------~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~-G~ 145 (474)
.+.+++.++...+. |+||||.++..+ . .++.+++.+... .++-+.+...-. .+.. +.
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~--~~~~~~~ 148 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLAD--LAKPGGR 148 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhcc--CCCcCCc
Confidence 78889999988775 999999999621 1 122233333221 223333322111 1112 33
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHH
Q 011931 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~ 187 (474)
.+++|.|.++.+.+..+.+.+|... +.+|+...+.
T Consensus 149 ~~v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a~ 185 (211)
T COG2085 149 RDVLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENAR 185 (211)
T ss_pred eeEEEecCcHHHHHHHHHHHHhcCcce-------eecccccccc
Confidence 5667778899999999999999774 6677755554
No 89
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=3.2e-11 Score=119.87 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=125.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|+||.++|.+|.+.|++|.+++++.++........ ++... +.+++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-H
Confidence 46799999999999999999999999999988766544443322 23333 88899888 99999999986 5
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccc-----ccCCC-ccc-cCCC--HHH
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 155 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~-----a~~G~-~i~-~gg~--~~~ 155 (474)
...++ +++.+.+++|++|+.++...... .. .....++.++. +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~---~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF---GQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh---ce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999886555533211 11 11223444443 464444311 22455 444 5554 888
Q ss_pred HHHHHHHHHHHhccCCCCCCceEE--eCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTY--VSK------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~--~g~------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
.+.+..++..+|.... -++. ..+ -|. . -+ +-.+...++..++.++...| .+|+..
T Consensus 162 ~~~a~~l~~aiG~~~~----g~~~ttf~~e~~~dl~ge--q-~v----l~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRA----GVIETTFKEETETDLFGE--Q-AV----LCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCcc----ceeeeeecccccccchhh--H-HH----HhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 9999999999998520 0110 111 121 1 12 22345677888899999999 998864
No 90
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.36 E-value=2.7e-12 Score=134.32 Aligned_cols=119 Identities=17% Similarity=0.318 Sum_probs=98.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhhCCCC-CC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADL-AN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~gcii~s~ll~~~~~~~~~~~~l-~~ 385 (474)
+.+++|++||+||+++|+.|++++|+|.+++++ .++|.+++.++ |+.| ..+|+++++...++..+++. ..
T Consensus 180 ~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~ 253 (493)
T PLN02350 180 PGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDG 253 (493)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCC
Confidence 568999999999999999999999999999863 24898887777 9988 68999999988887655322 25
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 436 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~~ 436 (474)
.++|....+.-+|+++ +|++++|.++|+|+|+|++++. |.++++.+|..
T Consensus 254 f~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 254 YLVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred chHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 6777777777789999 9999999999999999999985 66666665543
No 91
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.36 E-value=1.5e-11 Score=135.54 Aligned_cols=192 Identities=17% Similarity=0.193 Sum_probs=133.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~ 68 (474)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+. .+++.+++++++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF- 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 3468999999999999999999999999999999988665432211 0000 045566666543
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~ 142 (474)
+. ||+||.+|+...+++ +++.++.+.++++.|+...|++.+.+ +++..+... |+||+..| ++.-.
T Consensus 413 ~~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv---- 483 (737)
T TIGR02441 413 KN---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL---- 483 (737)
T ss_pred cc---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE----
Confidence 44 999999999988777 45588888888888887666665433 454444321 45555432 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .++++++.+..+++.+++.+ +.+++ ..|.. .|.+. ...++|++.+.++ | ++++
T Consensus 484 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-G-v~~~ 543 (737)
T TIGR02441 484 ---EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-G-VDPK 543 (737)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCCch----HHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 24444 47899999999999999763 55543 55554 45554 4566999999865 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
+++.++.
T Consensus 544 ~ID~a~~ 550 (737)
T TIGR02441 544 KLDKLTT 550 (737)
T ss_pred HHHHHHH
Confidence 9999864
No 92
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.36 E-value=2.1e-11 Score=134.31 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=132.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~~ 69 (474)
..+|+|||+|.||..||..++.+|++|++||++++.+++..+.. ...+. .+++.++++++ ++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-FE 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-hc
Confidence 46899999999999999999999999999999998765432211 00000 04556666644 34
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~~ 143 (474)
. ||+||.++|...+++ +++.++.+.++++.||...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999987777 45588888888888887766666443 444444321 44555432 11111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
-++.| .+++.++.+..+++.+|+.+ +.+. ...|. +.|.+.. .+++|++.+.++ | .++++
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pGf----v~nRi~~---~~~~ea~~lv~~-G-a~~e~ 522 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPGF----FVNRVLF---PYFAGFSQLLRD-G-ADFRQ 522 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCch----hHHHHHH---HHHHHHHHHHHc-C-CCHHH
Confidence 24555 37899999999999999763 5554 45555 4466644 456899998875 6 89999
Q ss_pred HHHHHH
Q 011931 222 LQNVFT 227 (474)
Q Consensus 222 ~~~~~~ 227 (474)
++.++.
T Consensus 523 ID~a~~ 528 (715)
T PRK11730 523 IDKVME 528 (715)
T ss_pred HHHHHH
Confidence 999874
No 93
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.35 E-value=3.7e-12 Score=116.91 Aligned_cols=150 Identities=15% Similarity=0.264 Sum_probs=97.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cCCC----------CccccCCHHHHHhhc
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGDL----------PLFGFRDPESFVNSI 71 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~~~~----------~~~~~~s~~e~~~~l 71 (474)
||+|||+|.||..+|..++.+|++|++||++++.+++..+.... .+.. ++..++++++++ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876654432211 0000 466778888887 5
Q ss_pred CCCcEEEEecCCChhHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCCc
Q 011931 72 QKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGPS 146 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~~ 146 (474)
+|+||.++|...+++. ++.++.+.++++.+|...|++.+.+ +++..+... |+||+..|- ..+ -.-
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~-~~~-----lVE 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPH-LMP-----LVE 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTT-T-------EEE
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccc-cCc-----eEE
Confidence 9999999999877764 5578888888899888777766433 444433211 556654331 110 002
Q ss_pred cccC--CCHHHHHHHHHHHHHHhccC
Q 011931 147 LMPG--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 147 i~~g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
++.| .+++.++.+..+++.+|..+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~p 174 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTP 174 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4554 37899999999999998763
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.35 E-value=3.3e-12 Score=114.71 Aligned_cols=99 Identities=22% Similarity=0.411 Sum_probs=81.6
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+...... + .++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 6999999999999999999999999999999999998887653210 0 045678889999988 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.. ..+++++++.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 985 89999999999999999999998776
No 95
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.35 E-value=2.4e-11 Score=133.63 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=133.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~ 68 (474)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+. .+++.+++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF- 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 4568999999999999999999999999999999987665432110 0000 045556666443
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~ 142 (474)
+. ||+||.+||...+++ +++.++.+.++++.|+...|++.+.+ +++..+... |+||+..| ++.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv---- 461 (714)
T TIGR02437 391 DN---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (714)
T ss_pred cC---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE----
Confidence 44 999999999987777 45588888888888887766665443 444444321 45555432 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .++++++.+..+++.+|+.+ +.+. ...|.. .|.+.. ..+.|++.+.++ | .+++
T Consensus 462 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~-d~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~ 521 (714)
T TIGR02437 462 ---EVIRGEKSSDETIATVVAYASKMGKTP-------IVVN-DCPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFV 521 (714)
T ss_pred ---eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeC-Ccccch----HHHHHH---HHHHHHHHHHHC-C-CCHH
Confidence 24444 37899999999999999763 5554 355654 466644 456999999864 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
+++.++.
T Consensus 522 ~ID~a~~ 528 (714)
T TIGR02437 522 RIDKVME 528 (714)
T ss_pred HHHHHHH
Confidence 9999874
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.35 E-value=3.5e-11 Score=134.02 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=116.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.+.. .....+..++++. +|+||+|+|+.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 368999999999999999999999 4899999999887776554321 1134466777766 99999999985
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcc-cc-------cCCC-c-ccc--CC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-GA-------RHGP-S-LMP--GG 151 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~-~a-------~~G~-~-i~~--gg 151 (474)
.+.++++++.+.++++.+|+|+++++......+.+.+....++|+. .|++|++. +. ..+. . +.+ ++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999988899999999998866666666655444567765 68887653 11 1232 2 233 35
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 011931 152 SFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~ 169 (474)
+++.++.++++|+.+|.+
T Consensus 154 ~~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 154 DPAALARVDRLWRAVGAD 171 (735)
T ss_pred CHHHHHHHHHHHHHcCCE
Confidence 788899999999999976
No 97
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.34 E-value=3.5e-11 Score=132.28 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=131.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESF 67 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~ 67 (474)
.+.+|+|||+|.||..+|..++ .+|++|++||++++.+++...... ..+. .+++.++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 3568999999999999999998 589999999999986654432110 0000 04556666653
Q ss_pred HhhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCCcccc
Q 011931 68 VNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGGEEGA 141 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg~~~a 141 (474)
++. ||+||.++|...+++ +++.++.+.+++++|+...|++.+.+ ++++.+... |+||+..|- +.-.
T Consensus 382 ~~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV--- 453 (699)
T TIGR02440 382 FKD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV--- 453 (699)
T ss_pred hcc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE---
Confidence 444 999999999987777 45578888888888887766665443 444444322 455554331 1111
Q ss_pred cCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 142 RHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 142 ~~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
-++.| .+++.++.+..+++.+|+.+ +.+. ...|.. .|.+. ..+++|++.+.+ .| +++
T Consensus 454 ----Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~-d~pGfi----~nRl~---~~~~~Ea~~l~~-~G-~~~ 512 (699)
T TIGR02440 454 ----EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVA-DKAGFY----VNRIL---APYMNEAARLLL-EG-EPV 512 (699)
T ss_pred ----EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEc-cccchH----HHHHH---HHHHHHHHHHHH-CC-CCH
Confidence 24544 47899999999999999764 5554 345554 45554 456699999887 46 899
Q ss_pred HHHHHHHH
Q 011931 220 EELQNVFT 227 (474)
Q Consensus 220 ~~~~~~~~ 227 (474)
+++..++.
T Consensus 513 ~dID~a~~ 520 (699)
T TIGR02440 513 EHIDKALV 520 (699)
T ss_pred HHHHHHHH
Confidence 99999874
No 98
>PLN02712 arogenate dehydrogenase
Probab=99.34 E-value=6.1e-11 Score=129.18 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=107.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~vp~~ 84 (474)
.+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++ .. +|+||+|||..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~~---aDvViLavP~~ 119 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCERH---PDVILLCTSII 119 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhcC---CCEEEEcCCHH
Confidence 3578999999999999999999999999999998543 222222 244566788755 44 89999999974
Q ss_pred hhHHHHHHHHH-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCccc--ccCCC-cccc----CCCH--
Q 011931 85 APVDETIKTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF-- 153 (474)
Q Consensus 85 ~~v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~--a~~G~-~i~~----gg~~-- 153 (474)
.+..+++++. +.++++.+|+|++++.......+...+ ..++.|+.. |+.|.+.. ...+. .++. +.++
T Consensus 120 -~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~ 197 (667)
T PLN02712 120 -STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELR 197 (667)
T ss_pred -HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCcccc
Confidence 7889998886 678899999999988743333333333 346778874 88876521 12333 3333 2222
Q ss_pred -HHHHHHHHHHHHHhccC
Q 011931 154 -EAYKYIEDILLKVAAQV 170 (474)
Q Consensus 154 -~~~~~v~~ll~~lg~~~ 170 (474)
+.++.++++++.+|+++
T Consensus 198 ~~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 34566779999999873
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.34 E-value=1.6e-12 Score=111.56 Aligned_cols=111 Identities=18% Similarity=0.312 Sum_probs=74.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+||+|||+|++|..|++.|.++||+|. +|+|+++..+++..... -..+.++.|+++. +|+||++||++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH
Confidence 35799999999999999999999999997 55899887777765432 1334566777776 99999999997
Q ss_pred hhHHHHHHHHHhc--ccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAY--MEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
.+..+.++|... ..+|++|+++|.....+..+. ++++|...
T Consensus 80 -aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~ 122 (127)
T PF10727_consen 80 -AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIV 122 (127)
T ss_dssp -HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EE
T ss_pred -HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeE
Confidence 899999999887 789999999999876554433 44566543
No 100
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.34 E-value=5e-11 Score=120.62 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=105.1
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.++|+|||+ |.||+++|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999864 899999998511 23466777776 99999999986
Q ss_pred hhHHHHHHHHHhc---ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc-cccCCC-ccc-cCCCHHHHH
Q 011931 85 APVDETIKTLSAY---MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~-~a~~G~-~i~-~gg~~~~~~ 157 (474)
.+.+++.++.+. ++++.+|+|.++++....... ...+..|++. |+.|.+. +..+|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899988875 789999999999984433332 3446679985 8887754 334566 444 444556678
Q ss_pred HHHHHHHHHhcc
Q 011931 158 YIEDILLKVAAQ 169 (474)
Q Consensus 158 ~v~~ll~~lg~~ 169 (474)
.++.+++.+|++
T Consensus 138 ~v~~l~~~~Ga~ 149 (370)
T PRK08818 138 WVQSLCSALQAE 149 (370)
T ss_pred HHHHHHHHcCCE
Confidence 899999999987
No 101
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.33 E-value=1.3e-10 Score=115.47 Aligned_cols=253 Identities=16% Similarity=0.173 Sum_probs=159.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCC----ccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLP----LFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~-~~~----~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+-..- ..+ .....+..+. +..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~---~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEA---LGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhh---cCCCCEEEEEec
Confidence 6899999999999999999999999999998876 777776542100 001 0111111222 224999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC--CcccccCCC-c--cccCCCH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG--GEEGARHGP-S--LMPGGSF 153 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsg--g~~~a~~G~-~--i~~gg~~ 153 (474)
+. ++++++..+.+.+.+.+.|+-.-|+.. ..+.+.+.+... |+.+.++--.+ .......|. . .+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLG-HEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCc-HHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 97 899999999999999999998888873 333455544332 22222221111 111111233 1 2344566
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVLK 212 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N---------------------~~~~~~~~~i~Ea~~l~~ 212 (474)
+.++.+.++|+..+.+. .+..+.-...+.|++.| .......+++.|....+.
T Consensus 155 ~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 155 ELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred HHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 77888888887766552 33344566666676666 344456778899999999
Q ss_pred HhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 213 SVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 213 ~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+.| +. .+.+.+++....... .....++.++..+.+. ..+|.+.. ..++.|+++|+++|..+
T Consensus 228 ~~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 228 AEG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVND 290 (307)
T ss_pred hcc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHH
Confidence 987 54 433444443222221 1223344555544322 36777754 47899999999999883
No 102
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.32 E-value=9.1e-12 Score=107.01 Aligned_cols=94 Identities=23% Similarity=0.297 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-ccccccCCCcchHHHHh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 262 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-l~~~~~~~~~~~~~~i~ 262 (474)
|+|+.+|+++|.+.+..+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 6788899999988763 443 4588999999999
Q ss_pred hhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 263 DKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 263 ~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
||+. ++.+.|++.|+|+|+.
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~ 95 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLG 95 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHH
T ss_pred cHHH------HHHHHHHHcCCCCHHH
Confidence 9998 9999999999999999
No 103
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.31 E-value=6.6e-11 Score=130.42 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=131.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~ 67 (474)
...+|+|||+|.||..+|..++ .+|++|++||++++.+++..+.. ...+. .+++.+++++ .
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-G 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-H
Confidence 3568999999999999999999 88999999999988665532211 00000 0455666664 3
Q ss_pred HhhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCccccc
Q 011931 68 VNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGAR 142 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~ 142 (474)
++. ||+||.++|....++ +++.++.+.++++.|+...|++.+.+ ++++.+... |+||+..|-. .
T Consensus 387 ~~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~------~ 455 (708)
T PRK11154 387 FKH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEK------M 455 (708)
T ss_pred hcc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCcccc------C
Confidence 444 999999999987777 45578888888998887777666543 444444322 4454432210 0
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
.-.-++.| .+++.++.+..+++.+|..+ +.+. ...|.. .|.+. ..+++|++.+.++ | ++++
T Consensus 456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~-d~pGfi----~nRl~---~~~~~EA~~lv~e-G-v~~~ 518 (708)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTP-------IVVR-DGAGFY----VNRIL---APYINEAARLLLE-G-EPIE 518 (708)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEe-ccCcHH----HHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 11124544 47999999999999999763 4553 355554 35554 4556999999886 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
++..++.
T Consensus 519 dID~a~~ 525 (708)
T PRK11154 519 HIDAALV 525 (708)
T ss_pred HHHHHHH
Confidence 9998864
No 104
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.24 E-value=2.1e-10 Score=114.04 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=119.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|||||+|+||.++|++|.+.|++|+++++. +++.+.+.+.+ +.. .+..++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 44455544322 343 357888887 9999999998656
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcc-----cccCCC-ccc-cCC--CHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE-----GARHGP-SLM-PGG--SFEAY 156 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~-----~a~~G~-~i~-~gg--~~~~~ 156 (474)
...+++++.+.++++. +|..+.+... ......+ ..++..+ -+|-..+.. ....|. .++ ++. +.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 7777788988888776 5666655432 2222222 2344444 366544421 003455 443 433 67788
Q ss_pred HHHHHHHHHHhcc-------C---CCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 157 KYIEDILLKVAAQ-------V---PDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 157 ~~v~~ll~~lg~~-------~---~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+.+..+|+.+|.. . ...|..+-... -.|+++. .+..+.|++ .+.| ++++....+
T Consensus 149 ~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa-----------~v~~~~eal---v~~G-~~~e~A~~~ 213 (314)
T TIGR00465 149 AIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTA-----------LIKAGFDTL---VEAG-YQPELAYFE 213 (314)
T ss_pred HHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHH-----------HHHHHHHHH---HHcC-CCHHHHHHH
Confidence 9999999999975 1 11122111111 1355553 222333554 5778 999987766
Q ss_pred H
Q 011931 226 F 226 (474)
Q Consensus 226 ~ 226 (474)
.
T Consensus 214 ~ 214 (314)
T TIGR00465 214 T 214 (314)
T ss_pred H
Confidence 4
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=99.18 E-value=5.3e-10 Score=113.92 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=93.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||++...+..... ++....+++++++. ||+|++++|...+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986332222111 24445689999888 99999999999899
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ ++.+..+++|.++|+++.+...+...+.+.|+...+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9988 5688889999999999999999999999999876554
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.16 E-value=4.5e-10 Score=112.76 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=93.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+++|+.|...|++|.+||++++..... .....+++++++. +|+|++++|...+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653221 1234578899887 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
..++ .++++.+++|.++|+++.+...+...+.+.|.+..+.....-|.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 7666 67788899999999999999889999999887655544433343
No 107
>PLN03139 formate dehydrogenase; Provisional
Probab=99.15 E-value=9.4e-10 Score=112.03 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=94.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+||+++...+...+. ++....+++++++. ||+|++++|..++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999985433222221 23445689999988 99999999999899
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+.++ .+++..+++|.++|+++.+...+...+.+.|++..+...
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GA 313 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGY 313 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEE
Confidence 9888 568888999999999999999999999999987655433
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.13 E-value=4.3e-09 Score=104.08 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cCCC---CccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK----EGDL---PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~~~---~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 90 (474)
||+.+|..|+++|++|++++|+ ++.+.+.+.+-. .+.. .+...+++++ .. .+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~---~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LP---PADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cC---CCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666766654311 0000 0112223333 23 489999999986 78999
Q ss_pred HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC----CeEEecCCCCCcccccCCC-ccccCC---CHHHHHHHHHH
Q 011931 91 IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYKYIEDI 162 (474)
Q Consensus 91 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~v~~pvsgg~~~a~~G~-~i~~gg---~~~~~~~v~~l 162 (474)
++.+.+.+.++++|+...|+.. ..+.+.+.+.... +.++.+-..+...-...+. .+..|. +.+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLG-HEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCC-CHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 9999999999999999888863 3334444443221 1122221111001111122 233443 22445556666
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--H
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLT--N 219 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~~i~Ea~~l~~~~G~l~--~ 219 (474)
|+..+.+ +....+.-...+.|++.|. .......++.|+..++++.| ++ .
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6665533 1233334445555555442 33455678999999999988 76 3
Q ss_pred HHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
+.+.+.+......... ...++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+.
T Consensus 227 ~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAE-NTSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCC-CCChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 3344444333221111 11234445544322 35677654 578999999999998743
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.07 E-value=1.1e-09 Score=110.33 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=90.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+|||++.... ....+ .. ..++++++++ +|+|++++|...+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~-------~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELG-------AE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcC-------CE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999865432 11111 22 3578999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 5788889999999999999999999999988765443
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.06 E-value=7.2e-10 Score=99.03 Aligned_cols=119 Identities=23% Similarity=0.225 Sum_probs=86.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..++|+|||+|.||..++..|.+.| ++|+++||++++.+++.+...... ......+..+++++ +|+||+|+|++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCC
Confidence 3468999999999999999999986 789999999998888776542100 00133456666555 99999999997
Q ss_pred hh-HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 85 AP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 85 ~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.. ++.+... ...++++.+++|+++.++. + .+.+.+++.|+++++.
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 93 MKPGDELPLP-PSLLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCCC-HHHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeCC
Confidence 53 2222211 1236789999999988544 4 7777788888877753
No 111
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.05 E-value=1.2e-09 Score=100.06 Aligned_cols=193 Identities=13% Similarity=0.189 Sum_probs=126.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-------C------C---C------CccccCCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-------G------D---L------PLFGFRDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-------~------~---~------~~~~~~s~ 64 (474)
+..|+|||.|.||+.+|+.-+..|++|.++|++++.+.+..+..... + . + ++..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 45799999999999999999999999999999998776554322110 0 0 0 34556677
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEec-CCCCCc
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGM-GVSGGE 138 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~-pvsgg~ 138 (474)
.+++.. +|+||.++-....++.-+ .++-...++..+++..+++. . ..+++..++. .|.||+.. ||+--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl-~-lt~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL-S-LTDIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce-e-HHHHHhhccChhhhceeeccCCchhHHHh
Confidence 777776 899988887665555433 44544455555555444332 2 2234333322 27788764 554433
Q ss_pred ccccCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011931 139 EGARHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGK 216 (474)
Q Consensus 139 ~~a~~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~ 216 (474)
+ ++-+ .+++.+..+..+-+.+|... .....-.|.. .|.+ .+-.+.|+.++.++.-
T Consensus 166 E-------Vir~~~TS~eTf~~l~~f~k~~gKtt--------VackDtpGFI----VNRl---LiPyl~ea~r~yerGd- 222 (298)
T KOG2304|consen 166 E-------VIRTDDTSDETFNALVDFGKAVGKTT--------VACKDTPGFI----VNRL---LIPYLMEAIRMYERGD- 222 (298)
T ss_pred h-------hhcCCCCCHHHHHHHHHHHHHhCCCc--------eeecCCCchh----hhHH---HHHHHHHHHHHHHhcC-
Confidence 3 2222 36888888888888888753 2222334443 3444 5677799999999987
Q ss_pred CCHHHHHHHHH
Q 011931 217 LTNEELQNVFT 227 (474)
Q Consensus 217 l~~~~~~~~~~ 227 (474)
.+-+++...++
T Consensus 223 AskeDIDtaMk 233 (298)
T KOG2304|consen 223 ASKEDIDTAMK 233 (298)
T ss_pred CcHhhHHHHHh
Confidence 99999988873
No 112
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.04 E-value=5.7e-09 Score=101.50 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=94.3
Q ss_pred HHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhccc
Q 011931 22 LALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYME 99 (474)
Q Consensus 22 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~ 99 (474)
+|+.|.++| ++|++||++++..+...+.+.. ....+..+.+.. +|+||+|||.. .+..++.++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------~~~~~~~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII------DEASTDIEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------SEEESHHHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------eeccCCHhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 578899999 7899999999988777665531 222222556666 99999999985 78999999999999
Q ss_pred CCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc----cc----cCCC-cc-ccCC--CHHHHHHHHHHHHHH
Q 011931 100 KGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE----GA----RHGP-SL-MPGG--SFEAYKYIEDILLKV 166 (474)
Q Consensus 100 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~----~a----~~G~-~i-~~gg--~~~~~~~v~~ll~~l 166 (474)
++.+|+|.++++-.....+.+.+. .++.|++. |+.|.+. .+ ..|. .+ +++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998665555555443 67889985 7777621 11 2455 33 3343 568899999999999
Q ss_pred hccC
Q 011931 167 AAQV 170 (474)
Q Consensus 167 g~~~ 170 (474)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9873
No 113
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.03 E-value=1.6e-09 Score=107.40 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=91.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. ||+|++++|..++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999988889999999998432 111 0124589999887 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+.....-|.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8888 56778899999999999999999999999988754543333343
No 114
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.03 E-value=1.4e-09 Score=99.75 Aligned_cols=111 Identities=12% Similarity=0.209 Sum_probs=88.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.+|+.+|+.|...|.+|.+|||+..........+ + ...+++|+.+. +|+|++++|...+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~ 104 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPE 104 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTT
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhccccc
Confidence 35799999999999999999999999999999987655333222 2 45699999998 9999999998777
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 105 T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 105 TRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred cceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 77666 5677889999999999999888888888888765444
No 115
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.03 E-value=1.6e-09 Score=107.88 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=90.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......+++++++. ||+|++++|...+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5799999999999999999999999999999765421111 01223578888887 99999999999898
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+..
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~g 247 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKG 247 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeee
Confidence 8888 46788899999999999999888889998887765543
No 116
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.03 E-value=2.5e-09 Score=107.72 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=88.5
Q ss_pred cCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-++|||||+|.||+.+|+.|+ ..|++|.+||+++.... . .. +....+++++++. +|+|++++|...
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-------~~~~~~l~ell~~---aDvIvl~lP~t~ 212 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-------VDYKDTIEEAVEG---ADIVTLHMPATK 212 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-------ccccCCHHHHHHh---CCEEEEeCCCCc
Confidence 358999999999999999994 56889999999875421 1 11 2345689999888 999999999987
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
..+.++ .+..+.+++|.++|++|.+...++..+.+.+.+..+.
T Consensus 213 ~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 213 YNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred chhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 776655 4677889999999999999999999999988765543
No 117
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.01 E-value=1e-08 Score=95.83 Aligned_cols=127 Identities=23% Similarity=0.300 Sum_probs=88.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++++.+... ....+ .+++... .+|+++.|.....-.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v~-~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVVA-PEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEEc-chhhccc--cCCEEEecccccccC
Confidence 67999999999999999999999999999999998888776421 23333 3444431 399998775544222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCC-CCCcccccCCCccccCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGV-SGGEEGARHGPSLMPGGS 152 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pv-sgg~~~a~~G~~i~~gg~ 152 (474)
+.. ++.+ +.++|++.+|....+ .+..+.|+++|+.|++ ... +||. ..+...++++.
T Consensus 100 ~~~----~~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~ 157 (200)
T cd01075 100 DDT----IPQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGN 157 (200)
T ss_pred HHH----HHHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCc
Confidence 233 3334 367999999987543 5777888999999987 333 4432 22334455654
No 118
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.98 E-value=5.4e-08 Score=93.39 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=146.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh---cC---------CCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------DLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~---~~---------~~~~~~~~s~~e~~~~l~ 72 (474)
|+||+-||+|.+|.+-...++-+ ..+|+++|.+..++.++....-. .| +.++...++.+..+..
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 57899999999999987776644 24789999998887665421100 00 1145566788888887
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHH--HcCCeE--EecCC
Q 011931 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELGLLY--LGMGV 134 (474)
Q Consensus 73 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--v~~pv 134 (474)
+|+||++|.++. .+++....+.......+||+.-||++...++.+.+.+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996652 24455556666667789999999999999988888874 345554 33342
Q ss_pred CCCcc---cccCCC-ccccCC--CHHHHHHHHH---HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 135 SGGEE---GARHGP-SLMPGG--SFEAYKYIED---ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 135 sgg~~---~a~~G~-~i~~gg--~~~~~~~v~~---ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
+-.+. .....| .++.|| +++-.+.++. +++.+-.+ . -+.....-+++..|++.|++.+.-+..++
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~-----~-~iittntwsselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR-----E-QIITTNTWSSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc-----c-ceeeccccHHHHHHHHHHHHHHHHHhhhH
Confidence 22111 112234 567787 4555555544 44444322 1 23445579999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011931 206 EAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
-+.++|++.| .+..++...+
T Consensus 232 s~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 232 SMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HHHHHHHhcC-CCHHHHHHHh
Confidence 9999999999 9988887765
No 119
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.95 E-value=4.2e-09 Score=103.40 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=70.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||.++|++|...|++|.+||+.....+.....+ +.. .+++|+++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644333332222 333 489999998 99999999986 44
Q ss_pred HHHH-HHHHhcccCCCEEEecC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~s 108 (474)
..++ +++++.+++|.+++-.-
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 7777 57999999999776543
No 120
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.93 E-value=1.8e-08 Score=92.57 Aligned_cols=204 Identities=16% Similarity=0.249 Sum_probs=130.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-----------hhhcCCC-------CccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----------AKKEGDL-------PLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~~~~-------~~~~~~s~~e~~ 68 (474)
.-||+|+|.|.+|+++|..|+..||+|..||..++.+....+. +...|.+ .+..++++.|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3579999999999999999999999999999998765433221 1111111 355788999999
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC--
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+. +=.|-.|+|.+-.++.-+ .++-..+. ..+|+..||+..-... ...-+..+.-..+..||-.. -.=|
T Consensus 83 k~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d-~~tIlaSSTSt~mpS~-~s~gL~~k~q~lvaHPvNPP----yfiPLv 153 (313)
T KOG2305|consen 83 KG---AIHIQECVPEDLNLKKQLYKQLDEIAD-PTTILASSTSTFMPSK-FSAGLINKEQCLVAHPVNPP----YFIPLV 153 (313)
T ss_pred hh---hhhHHhhchHhhHHHHHHHHHHHHhcC-CceEEeccccccChHH-HhhhhhhhhheeEecCCCCC----cccchh
Confidence 98 888888999886666544 44444444 4555555555433332 22333333333455554211 0111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 146 SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 146 ~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
-+++. .+++.+++.+.+.+.+|.++ +.+-.+ --|. +.|.+.|++ ++|.+.|+...+ ++..++.
T Consensus 154 ElVPaPwTsp~tVdrt~~lM~sigq~p------V~l~re-i~Gf----~lnriq~Ai---lne~wrLvasGi-l~v~dvD 218 (313)
T KOG2305|consen 154 ELVPAPWTSPDTVDRTRALMRSIGQEP------VTLKRE-ILGF----ALNRIQYAI---LNETWRLVASGI-LNVNDVD 218 (313)
T ss_pred eeccCCCCChhHHHHHHHHHHHhCCCC------cccccc-cccc----eeccccHHH---HHHHHHHHHccC-cchhhHH
Confidence 13333 47889999999999999764 333333 2232 236666554 599999999877 9988888
Q ss_pred HHHHhhccCcchhh
Q 011931 224 NVFTEWNKGELLSF 237 (474)
Q Consensus 224 ~~~~~~~~~~~~s~ 237 (474)
.++ +.|.+-.|
T Consensus 219 ~Vm---S~GLG~RY 229 (313)
T KOG2305|consen 219 AVM---SAGLGPRY 229 (313)
T ss_pred HHH---hcCCCcch
Confidence 886 45544333
No 121
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.91 E-value=1.6e-08 Score=98.93 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=88.3
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+++++++.+. +|+|++|
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vvi~ 74 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVVEA 74 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEEEC
Confidence 35568999999999999999999873 78876 889999988877664321 2356789999876 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE-EecCCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY-LGMGVSGG 137 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-v~~pvsgg 137 (474)
+|+. ...++...+ ++.|..|+..+.......+++.+.+++.|..+ +..+-.++
T Consensus 75 tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 75 APAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred CCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 9986 445554443 45676666666554456677777778888765 54443333
No 122
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.91 E-value=5.2e-08 Score=94.00 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=118.6
Q ss_pred CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 30 GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 30 G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
-++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||++ .++++++.++.+.+.++++||++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988887653 24567788888887 9999999995 6899999999887777899999999
Q ss_pred CCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeC-Cch
Q 011931 110 EWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVS-KGG 184 (474)
Q Consensus 110 ~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g-~~g 184 (474)
+.+. ..+.+.+.. +..++. +|-. +.....|.+ +..+. +++..+.++.+|+.+|......|..+-... -.|
T Consensus 79 gi~~--~~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsg 153 (245)
T TIGR00112 79 GVTL--EKLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSG 153 (245)
T ss_pred CCCH--HHHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhcc
Confidence 8743 344444432 223443 4532 223345663 44442 566778899999999975322232222111 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+|. ++.+.+++.+.++ +.+.| +++++..++..
T Consensus 154 sgP-------A~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 154 SGP-------AYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred CcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 554 5677777777777 67778 99999988874
No 123
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.89 E-value=1.7e-07 Score=87.70 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=135.1
Q ss_pred cCcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHHHHH-HHhhhhcCCCCccccCCHH
Q 011931 7 LTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKKEGDLPLFGFRDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~~~~~~~~~~s~~ 65 (474)
+|||+|.|+|+- |..||..++++||+|.+.|+|.+-.+.- -+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 578999999974 6789999999999999999886643322 2222222 478888999
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHH-HHHHHH--Hc--CCe-EEecCCCCCcc
Q 011931 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTER-REKAMA--EL--GLL-YLGMGVSGGEE 139 (474)
Q Consensus 66 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~--~~--g~~-~v~~pvsgg~~ 139 (474)
++++. .++.++-+|-+...-.+..+|+++++.|.+|.++.|.+|..... +...|+ .+ |+. +..++|-|.|.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 99888 99999999999888889999999999999999999988765433 233332 22 332 22334544442
Q ss_pred cccCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 140 GARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 140 ~a~~G~~i~~g--------g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
+|-.++.| .+++..+++.++.++.|..+ +.+ +..--+.+-=..-.+.+..++.+.+-+...
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~-------yv~-padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEV-------YVL-PADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCce-------Eec-CHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333332 25788899999999999762 333 322222222122234455677788888888
Q ss_pred HHhCCCCHHHHHH
Q 011931 212 KSVGKLTNEELQN 224 (474)
Q Consensus 212 ~~~G~l~~~~~~~ 224 (474)
++.-|.+.+.+.+
T Consensus 224 ~qIi~AP~eMIek 236 (340)
T COG4007 224 TQIIGAPKEMIEK 236 (340)
T ss_pred HHHhCCcHHHHHH
Confidence 8654366555443
No 124
>PLN02928 oxidoreductase family protein
Probab=98.87 E-value=3.2e-08 Score=100.13 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=89.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH--------HhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++|||||+|.||+.+|+.|...|.+|++|||+..+..... ..... ......++++++++ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5799999999999999999999999999999843211110 00000 00134578899888 999999
Q ss_pred ecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
++|.....+.++ .+.+..+++|.++|+++-+..-+...+.+.|....+..
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~g 283 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGG 283 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 999888888877 56788899999999999998888888988887654443
No 125
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.86 E-value=1.5e-08 Score=108.20 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=91.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+||+.... +...+. ++...++++++++. ||+|++++|...+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986321 111111 23445689999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++.+..-+...+.+.|++..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998765543
No 126
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.84 E-value=5.8e-08 Score=94.11 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=110.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|||||.|+||+-+|..|.++||.|.++||+. ...+.+..+ ....+.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 479999999999999999999999999999986 445554432 3456778888775 599999999875 78
Q ss_pred HHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc-cccC--CCccc----cCCC----HHH
Q 011931 88 DETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE-GARH--GPSLM----PGGS----FEA 155 (474)
Q Consensus 88 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~-~a~~--G~~i~----~gg~----~~~ 155 (474)
+.++...-+. ++.|++++|..+..........+.| .+.+..+-+.-+.||+ .... |-.++ -.|. ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYL-PkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYL-PKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhC-ccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777666 8899999999988755554555555 3467667653334444 3222 22222 1233 778
Q ss_pred HHHHHHHHHHHhccC
Q 011931 156 YKYIEDILLKVAAQV 170 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~ 170 (474)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 899999999988774
No 127
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.83 E-value=2.2e-08 Score=100.04 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=90.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|..+...|++|.+||+...+-..... ......++++++++ ||+|++.+|-....
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 57999999999999999999999999999994332211111 23456789999998 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 567778999999999999998888899888876534
No 128
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.83 E-value=2.1e-08 Score=107.09 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=89.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+||++... +..... ++... +++++++. ||+|++++|..++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 111211 13334 89999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+.++ .+.+..+++|.++|+++.+...+...+.+.+++..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 678888999999999999999999999998876544
No 129
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.80 E-value=2.1e-08 Score=88.50 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=65.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..++..+.+ +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 4799999999999999999999999999998876 444444433 33 4588999998 99999999985 5
Q ss_pred HHHHH-HHHHhcccCCCEEEecCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st 109 (474)
..+++ +++.|.|++|++++-...
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCc
Confidence 56676 889999999998875443
No 130
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.80 E-value=2.6e-08 Score=101.51 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~-- 85 (474)
++|||||+|.||+.+|+.+...|++|.+||+.....+ . .....++++++++ ||+|++++|...
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5799999999999999999999999999998643211 1 1234589999888 999999999754
Q ss_pred --hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 --PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
....++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.....-|.-
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 355555 567788999999999999999999999988876544333333433
No 131
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.80 E-value=5.6e-08 Score=96.97 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=88.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+|||+.... .. .+ ...+++++++. ||+|++++|...+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999974321 11 12 24489999888 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 5677889999999999999988999999988765554
No 132
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.78 E-value=6.2e-08 Score=96.70 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=93.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+++||||+|.+|+.+|+++...|.+|..|||++. .+..+.. +.... +++|++++ +|+|++.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 5799999999999999999988899999999975 2222221 12334 49999998 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
..++ .+.+..+++|.++|+++-+...+...+.+.|++..+.-...-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 8888 56778899999999999999999999999998765543333333
No 133
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.78 E-value=4.6e-08 Score=97.24 Aligned_cols=100 Identities=38% Similarity=0.705 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhHhhhcccccccccCCCcchHHHHhh
Q 011931 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (474)
Q Consensus 186 g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G-~l~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~ 263 (474)
|+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.+. ++||++++..+++.+++ .++.+.+
T Consensus 167 ~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~~ 237 (298)
T TIGR00872 167 GHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFSG 237 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHHH
Confidence 689999999999999999999999999974 2799998887 78876 69999999999887642 3566777
Q ss_pred hcCCCccHHHHHHHHHHcCCCcccHHHHHHH
Q 011931 264 KTGMKGTGKWTVQQAADLSVAAPTIEERVEA 294 (474)
Q Consensus 264 ~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~ 294 (474)
.+.++++++|++..|.+.|+|+|++...+..
T Consensus 238 ~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~ 268 (298)
T TIGR00872 238 RVSDSGEGRWTVIAAIDLGVPAPVIATSLQS 268 (298)
T ss_pred HHHhhccHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7778999999999999999999999665443
No 134
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.76 E-value=5.3e-08 Score=100.64 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=90.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++++++. ||+|++++|...+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 479999999999999999999999999999874311 01 13345689999988 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++.+..-+...+.+.|++..+..
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 8888 56788899999999999999999999999998765543
No 135
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.76 E-value=1.6e-07 Score=94.18 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|||||+|.+|+.+|+.+. ..|.+|.+||+...... .... +.. ..++++++++ ||+|++++|...+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 78899999998743211 1111 122 3489999988 9999999999888
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5678889999999999999988999999988765443
No 136
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.74 E-value=1.6e-07 Score=94.03 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=87.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.... .. . ...+++++++. ||+|++++|...+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 1 13478999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 5678889999999999999888888999988765443
No 137
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.74 E-value=1.2e-07 Score=94.70 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=87.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.... .. . ....+++++++. ||+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999986421 00 0 123579999988 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 5677889999999999999988999999988866554
No 138
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.72 E-value=1.4e-07 Score=92.02 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
||||||||+|.||..++..+.+. +++ +.++|+++++.+++.+.. +...++++++++.. +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 47999999999999999999876 455 458999999988876643 24567789988765 9999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~v~~p 133 (474)
. ...++...++ +.|.-++..|.. .+...+++.+..++.|.. +++.+
T Consensus 72 ~-~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sg 121 (265)
T PRK13304 72 N-AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSG 121 (265)
T ss_pred H-HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCc
Confidence 5 5555555444 345555555552 333455666666677754 44443
No 139
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.71 E-value=2e-07 Score=91.94 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=80.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||+|.||..+|+.|...|.+|+++||++++.+++.+.+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999877665443211 1112244555555 99999999874 11
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
. .+..+.++++.+|||.++.+-.+.. +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3455678899999999997644332 45567788776554
No 140
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.70 E-value=8.6e-08 Score=97.42 Aligned_cols=106 Identities=11% Similarity=0.142 Sum_probs=84.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|+.|...|.+|.+||+..... .. .....++++++++ ||+|++.+|-...
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~------~~------~~~~~~L~ell~~---sDiI~lh~PLt~~ 180 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR------GD------EGDFRSLDELVQE---ADILTFHTPLFKD 180 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc------cc------ccccCCHHHHHhh---CCEEEEeCCCCCC
Confidence 3579999999999999999999999999999753210 10 1124589999988 9999999996543
Q ss_pred ----HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 87 ----VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 87 ----v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
...++ .+.+..+++|.++|+++-+...+...+.+.+++..+
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 45555 567788999999999999998888889888876544
No 141
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.70 E-value=1.5e-07 Score=88.52 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=132.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|||||.|.|..++++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 55555553222222 2222 24444455777777 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCccccCC---CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~i~~gg---~~~~~~~ 158 (474)
+. .+..++.++.+.+..+++|+.+.-+.... .+.+.+. ...+++. +|- .|....+|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRvmpN--tp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRVMPN--TPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEecCC--ChhhhhcCcEEEeeCCCcchhhHHH
Confidence 85 88999988888788899999988776433 3333333 2233443 232 233445666544333 4566688
Q ss_pred HHHHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
++.+|...|.....+|+|+.. .|-.|+|.+ +.+..+..+++. +-+.| ++++...++-
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmG-lPr~lA~~la 202 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMG-LPRQLAYRLA 202 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccC-CCHHHHHHHH
Confidence 999999999877778888864 455899884 555566666666 66778 9988877764
No 142
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.68 E-value=7.2e-08 Score=96.46 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+..... +.++..+.++++++.+ +|+|+.+++
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~ 198 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATL 198 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeC
Confidence 345689999999999999986554 4478999999999999988764321 0125567888888887 999988888
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... .++.. +.+++|. +|++.+..+...+++...+.+++..|+|.
T Consensus 199 s~~---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 199 STE---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCC---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 753 33321 4567888 56666666667777766666666678774
No 143
>PLN02306 hydroxypyruvate reductase
Probab=98.61 E-value=4.5e-07 Score=92.77 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=91.9
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHhhhh----cCC--CCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAKK----EGD--LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~~~~----~~~--~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++|||||+|.+|+.+|+.+. ..|.+|.+||+++.. ...+...... .+. .+.....+++++++. ||+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 779999999998642 2211111000 000 001223588999888 999999
Q ss_pred ecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.....-|+-
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 999888888888 567788999999999999988888888888876544433334443
No 144
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.55 E-value=2e-07 Score=91.32 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=62.6
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||.| .||.+||.+|.++|+.|++|++.. .++++++++ +|+||+|++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 479999996 999999999999999999998652 256777777 9999999998866
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999998754
No 145
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.53 E-value=3.1e-07 Score=81.59 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC----c---cccCCHHHHHhhcCCCcEEEEecC
Q 011931 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP----L---FGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~----~---~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+....... + ....+..+.... +|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGP---YDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHST---ESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCC---CcEEEEEec
Confidence 7899999999999999999999999999998 7777665542100000 0 011112123333 899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAM 122 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l 122 (474)
.. +++++++.+.+.+.+++.|+..-|+.. ..+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g-~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG-NEEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS-HHHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC-cHHHHHHHc
Confidence 86 789999999999999989998888863 333444433
No 146
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.51 E-value=2e-06 Score=73.12 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=80.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+||||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++.+. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 4899999999999999888877 45654 8899999998886654 35688999999984 2489999999997
Q ss_pred hhHHHHHHHHHhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+-+. .++ ..| .++++- -...+.+.+++.+..+++|..+
T Consensus 74 ~h~~~~~-~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAK-KAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHH-HHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHH-HHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 5544333 333 233 455652 1224567777777777777643
No 147
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.51 E-value=7.3e-07 Score=88.34 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=89.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||+|+|.+|+.+|++|...|..+..++|++...+...+.+. -..+.+++..+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~--------~~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA--------EFVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc--------cccCHHHHHhh---CCEEEEecCCCHH
Confidence 357999999999999999999999556666787776666554432 14588888888 9999999999999
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (474)
...++ .++...+++|.+||+++-+...+.+.+.+.+++
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 99988 578889999999999999998888888888865
No 148
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.47 E-value=9.3e-07 Score=87.63 Aligned_cols=111 Identities=17% Similarity=0.113 Sum_probs=79.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..+++|||+|.+|..++..|...|.+|+++||++++.+.....+. ......++.+.+.+ +|+||.++|.. .
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~-----~~~~~~~l~~~l~~---aDiVI~t~p~~-~ 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGL-----SPFHLSELAEEVGK---IDIIFNTIPAL-V 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-----eeecHHHHHHHhCC---CCEEEECCChh-h
Confidence 368999999999999999999999999999999887665544331 11122344555555 99999999864 1
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+-++....++++.+|||.++..-.+.. +..+++|+..+..
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pggtd~---~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGGTDF---EYAEKRGIKALLA 262 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCCcCe---eehhhCCeEEEEE
Confidence 224556678899999999987644322 3445678777654
No 149
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.43 E-value=9e-07 Score=86.70 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=81.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~- 85 (474)
.+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+..+.. +..+|+||.|+|.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCC
Confidence 357999999999999999999999999999999999888776532110 111 22333322 224899999999752
Q ss_pred -hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 -PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 -~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.++.+.- -...+.++.+++|++..++.+ .+.+..+++|..+++
T Consensus 192 ~~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 192 GNIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467899999999887655 467777888887765
No 150
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.40 E-value=1.9e-05 Score=73.38 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=77.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999997 99999999999999999861 12 89999999986 6
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCC---Ccccc--CCCHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYKYIE 160 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G---~~i~~--gg~~~~~~~v~ 160 (474)
+.+++.++. .+|+|.++++.. +.+ ....|++. |+.| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~----i~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWP----FKK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHH----HHH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776653 379999998742 211 24578885 7776 5544443 33333 33567778888
Q ss_pred HHHHHHhcc
Q 011931 161 DILLKVAAQ 169 (474)
Q Consensus 161 ~ll~~lg~~ 169 (474)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8888 655
No 151
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.36 E-value=2.2e-06 Score=85.72 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=69.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..++|+|||+|.||..++..|...| .+|+++||++++..++.+.... .....++..+.+.. +|+||.|++.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCC
Confidence 3568999999999999999999866 6899999999998888765421 11122234455554 99999999987
Q ss_pred hhHHHHHHHHHhcc-cCCCEEEecCC
Q 011931 85 APVDETIKTLSAYM-EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l-~~g~iiId~st 109 (474)
.. ...+..+.... .++.+|||.+.
T Consensus 250 ~~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 250 HY-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ch-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 54 44444443322 35789999985
No 152
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.35 E-value=6.8e-06 Score=83.39 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=87.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|-|||+|.+|+..|..|+++| ++|++-||++++.+++...... ++.. ..+.+.+.+-|++.|+||.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 679999999999999999999999 8999999999999988765311 1111 123333333344489999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
|.... ..+++. .++.|.-++|+|...+.. .++....++.|+..+ ++++..|
T Consensus 77 p~~~~-~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPG 128 (389)
T COG1748 77 PPFVD-LTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPG 128 (389)
T ss_pred Cchhh-HHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcc
Confidence 98743 344433 355789999999887664 667777777776544 4565544
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.34 E-value=1.5e-06 Score=75.87 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+..++.|||+|.||+.++..|.+.|.+ |+++||+.++++++.+..... ...+...++..+.... +|+||.|+|.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCC
Confidence 346899999999999999999999986 999999999999998765211 0012233445555555 99999999987
Q ss_pred hhHHHHHHHHHhcccCC-CEEEecCC
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~st 109 (474)
.. .+-.+..+...+. .+++|.+.
T Consensus 87 ~~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 87 MP--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ST--SSTHHHHTTTCHHCSEEEES-S
T ss_pred Cc--ccCHHHHHHHHhhhhceecccc
Confidence 44 1112222222211 49999974
No 154
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=1.7e-06 Score=84.93 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=60.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 4799999 99999999999999999999995 553 34566666 999999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.++.++ +++|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998764
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.30 E-value=3.3e-06 Score=84.92 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....++||||+|.||...+..|.. ...+|.+|||++++.+++.++.... +..+..+.++++++++ +|+|++|+|
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT~ 201 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTTP 201 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEecC
Confidence 345689999999999997766654 3468999999999998887653321 1124567899999988 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
..+. ++. ...+++|..|...++..|.
T Consensus 202 s~~P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 202 SRKP---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CCCc---Eec--HHHcCCCCEEEecCCCCcc
Confidence 8643 221 2346899999888887653
No 156
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.26 E-value=5.5e-06 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC---C--CCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG---D--LPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~---~--~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.......... . .+++.+.+.++ ++. ||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 5799999999999999999999876 99999999876544322110000 0 02333445544 344 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+..+. .+++++..+.+.. +..++|..||..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 74221 2344445566655 556777777644
No 157
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.13 E-value=1.5e-05 Score=79.27 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=83.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+..+++|||+|.+|...+..++.- . -+|.+|||++++.+++.++.....+..+..+.++++++.. +|+|+.+++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 345799999999999998888754 2 3799999999999998876532111136678899999998 9999999997
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.+. +++ ...+++|..|.-.++..|...+--.+.+......|+|.
T Consensus 193 ~~P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 193 DTP---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CCc---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 643 331 23577898888888877643322223333333456664
No 158
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=6.9e-06 Score=80.04 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=61.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||. |.||.+||..|.++|+.|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 47999999 999999999999999999999311 2367777777 9999999999876
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.. .+++|.+|||+|...
T Consensus 215 v~~~------~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKE------FVKEGAVVIDVGMNR 233 (284)
T ss_pred CCHH------HccCCcEEEEeccee
Confidence 6554 378999999998764
No 159
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.12 E-value=1e-05 Score=77.96 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=69.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|+|||.|+-|.+-|+||.++|.+|++--|.... .+...+.+ +. ..+.+|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 47999999999999999999999999988776555 33333322 33 5689999998 99999999986 5
Q ss_pred HHHHHH-HHHhcccCCCEEEe
Q 011931 87 VDETIK-TLSAYMEKGDCIID 106 (474)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId 106 (474)
-.++++ ++.|.|++|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 566664 89999999986643
No 160
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.11 E-value=1.9e-05 Score=79.52 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=81.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|.+|...+..++. .+ .+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.|+|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCC
Confidence 34579999999999998887754 34 3789999999999988765422101123457788888887 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... ++. ..+++|..|+..++..|...+.-...+......|+|.
T Consensus 203 ~~p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 203 KTP---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCc---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 743 333 4578999999998877644332223333333345654
No 161
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.11 E-value=2.1e-05 Score=78.39 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++.+ +|+|+.|+|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~ 197 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATT 197 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccC
Confidence 344689999999999999999975 45 479999999999999887653210 0122 5678888887 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.... ++.. .+++|..|+..++..|..-+--.+.+... -.|+|.
T Consensus 198 s~~P---l~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 198 SRTP---VYPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred CCCc---eeCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 8753 3332 36899999999887764332222233322 346665
No 162
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.11 E-value=2.1e-05 Score=78.61 Aligned_cols=118 Identities=12% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+++|||+|.++...++.+..- --+|.+|||++++.+++.+..... +..+..+++.++++.. +|+|+.+++
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT~ 201 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTTP 201 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEecC
Confidence 3456799999999999998887753 248999999999999888654322 1245667899999988 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHH-HHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~v~~ 132 (474)
.... +++ ...+++|..|+..++..|.. +++. +.+......++|.
T Consensus 202 s~~P---~~~--~~~l~~G~hi~~iGs~~p~~-~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 202 SREP---LLQ--AEDIQPGTHITAVGADSPGK-QELDAELVARADKILVDS 246 (315)
T ss_pred CCCc---eeC--HHHcCCCcEEEecCCCCccc-ccCCHHHHhhCCEEEECC
Confidence 7643 332 13578999999888877643 3333 3333333345664
No 163
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.10 E-value=2.1e-05 Score=78.41 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=66.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+... +...... ..+++.+.+.++ ++. +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 8999999766433111 1111000 013555667776 444 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.+. .++++.+++.+.. ++.+||..||-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 8532 2333445566654 667888888854
No 164
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.08 E-value=4.4e-05 Score=70.67 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=74.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||+||+|.+|..+...+.+. .+ .|.+|||+.++..++.+... ...+++++|++.. +|+++.|-..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 5799999999999999877643 24 46799999999988876542 3455889999876 9999999876
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+++++...+++.. ..+-+|++.+....+...++...+.+.+-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~ 112 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGG 112 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCC
Confidence 4666665554432 12345556555554444444444444443
No 165
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=3.7e-05 Score=73.20 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=69.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
|+|.|||+|.+|..+|+.|.+.||+|++.|++++++++.... .... -+....+..++..+ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 689999999999999999999999999999999998885541 1100 12233344444433 45699999999886
Q ss_pred hhHHHHHHHHHhc-ccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAY-MEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~-l~~g~iiId~st~ 110 (474)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666655533 4455566555543
No 166
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.06 E-value=1.4e-05 Score=68.35 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=62.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
||+||| .|.+|..++..|.+. ++++..+ +++.++.+.+........ ... ...+..++. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFE--ELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChh--hcCCCEEEEcCCcH
Confidence 689999 599999999999884 7887755 766544433333321100 010 011112222 01399999999997
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45555555566678999999999875
No 167
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.06 E-value=2.2e-05 Score=67.50 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred CcEEEEcc-cHhHHHHHHHHHH-CCCcEE-EEeCChH-HH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTS-KV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|||+|+|+ |.||+.++..+.+ .++++. ++|++++ .. .++.... ..++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 688865 7788872 11 1111111 1146677899999888 999998
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
...+ ..+.+.++... +.|.-+|..+|+......+..+.+.++ +..+-+|
T Consensus 74 fT~p-~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES-H-HHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cCCh-HHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 8843 45555555444 347888888888754443444444333 4444333
No 168
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.05 E-value=2.2e-05 Score=69.89 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=62.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
++.|+|.|..|+.+|+.|...|-+|++++++|-+.-+....+ +.. .+.++++.. +|+||.++.....+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVIT 93 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB-
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCccccC
Confidence 699999999999999999999999999999997766655443 333 468888877 999999887653221
Q ss_pred HHHHHHHhcccCCCEEEecCCCCc
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
.+..+.+++|.++.+.+....
T Consensus 94 ---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 94 ---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ---HHHHHHS-TTEEEEESSSSTT
T ss_pred ---HHHHHHhcCCeEEeccCcCce
Confidence 344556889999999887643
No 169
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.04 E-value=3.4e-05 Score=75.58 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=74.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--C-----CcEEEEeCChH------HHHHHHHhhhhc-----C---CCCccccCCHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVERAKKE-----G---DLPLFGFRDPES 66 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~~~~~~-----~---~~~~~~~~s~~e 66 (474)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+........ + ..++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5799999999999999998764 2 26777754432 333333221110 0 015677888999
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++.. +|++|..+|. +.+..++++|..+++++...|+++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 9887 9999999998 5899999999999999999999887653
No 170
>PLN00203 glutamyl-tRNA reductase
Probab=98.03 E-value=2.5e-05 Score=82.93 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|+|||+|.||..++..|...|. +|+++||++++.+.+.+..... ...+....+..+++.. +|+||.|++.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~ 340 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSE 340 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCC
Confidence 35689999999999999999999997 7999999999998887653210 0011223445555665 99999999776
Q ss_pred hh--HHHHHHHHHhcc---cCCCEEEecCC
Q 011931 85 AP--VDETIKTLSAYM---EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~--v~~vl~~l~~~l---~~g~iiId~st 109 (474)
.. ..+.++.+.+.- ....+|||.+-
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 43 223333332211 11247777764
No 171
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.03 E-value=1e-05 Score=82.85 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=67.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++|+|||+|..|.+.|.+|...|++|++--|. .+..+.+.+.+ +.. .+++|+++. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~v-~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Ccc-CCHHHHHHh---CCEEEEcC
Confidence 57999999999999999999999999944433 33333333322 433 578999888 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIID 106 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId 106 (474)
|+. .-..+.+++.+.|++|.++.-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEe
Confidence 997 455666899999999988754
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.03 E-value=4.3e-05 Score=75.94 Aligned_cols=87 Identities=17% Similarity=0.397 Sum_probs=61.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+.||+|||+|+||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++... +|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~~---iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLDD---VDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhccC---CCEEEEcCCC
Confidence 47999999999999999999866 78877 679985 4332 111 13334455555544 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
....+. ..+.|..|.-+|+...
T Consensus 71 ~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHHH----HHHHHHcCCCEEECCC
Confidence 765443 3455667888888754
No 173
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.01 E-value=2.7e-05 Score=82.33 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=75.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++++|+|+|.+|.+++..|++.|++|+++||++++.+.+.+.... . ..+..++ ..+..+|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999988877654311 1 1122222 113449999999998854
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+... +. .+++|+...++.+. +.+.++++|...++
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 3321 21 38999998776544 55666777776553
No 174
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.98 E-value=3e-05 Score=80.59 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=70.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||.|.+|+.+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++...
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt~--- 320 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGNK--- 320 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCcc---
Confidence 4799999999999999999999999999999987764433322 22 3467888877 99999997543
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~ 111 (474)
.++ .+....+++|.++++.+...
T Consensus 321 -~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 321 -DIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred -cccCHHHHhccCCCcEEEEcCCCc
Confidence 344 35667789999999998874
No 175
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.96 E-value=7.3e-05 Score=76.80 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=74.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +.. .+.+++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 222 356777766 99999887653
Q ss_pred HHHHH-HHHhcccCCCEEEecCCCCc-hhHHHHHHHH
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNEWY-ENTERREKAM 122 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~l 122 (474)
.++. +....+++|.++++.+.... .+...+.+.+
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 3443 46678899999999988754 3444554443
No 176
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.96 E-value=6e-05 Score=75.23 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=86.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
....++|||+|.++...+..+..- .-+|.+|+|+++..+++.......+...+..+.+.+++++. +|+|+.|+|+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCC
Confidence 345799999999999998888754 34899999999999998865443221125688899999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.+ .++. ...+++|..|.-.++-.|...+--.+.+...+..|+|.+
T Consensus 206 ~~---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 206 TE---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred CC---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 75 3332 245789999988887665443333334444446677764
No 177
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.95 E-value=4.6e-05 Score=76.73 Aligned_cols=99 Identities=10% Similarity=0.232 Sum_probs=72.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|.+|...+..|+. .+. +|++|||++++.+++.+......+..+..++++++++.. +|+|+.|+|.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCC
Confidence 34579999999999999999973 564 699999999999998875422101124456788888877 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
... ++. ...+++|..|...+.-.|
T Consensus 205 ~~p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 205 ETP---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred CCc---Eec--HHHcCCCcEEEeeCCCCC
Confidence 643 332 124678998887776544
No 178
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.94 E-value=6e-05 Score=76.05 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=71.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+......+..+..+.++++++.+ +|+|+.++|.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s 207 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPS 207 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCC
Confidence 34689999999999998888875 44 5799999999999998875432101123456788888887 9999999988
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
... ++.. ..+++|..|...++..|
T Consensus 208 ~~p---~i~~--~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 208 EEP---ILKA--EWLHPGLHVTAMGSDAE 231 (330)
T ss_pred CCc---EecH--HHcCCCceEEeeCCCCC
Confidence 643 3321 23667887777665443
No 179
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.93 E-value=4.3e-05 Score=79.54 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=64.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......+..+++.. +|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCC
Confidence 357999999999999999999999 7899999999988777764321 11122345555555 999999998764
Q ss_pred hHHHHHHHHHhccc---CCCEEEecC
Q 011931 86 PVDETIKTLSAYME---KGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~---~g~iiId~s 108 (474)
.+-. -+.+.+.+. ...+++|.+
T Consensus 253 ~ii~-~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 253 PIVS-KEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred ceEc-HHHHHHHHhcCCCCeEEEEeC
Confidence 4310 012222221 234788886
No 180
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.92 E-value=0.00014 Score=82.59 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=83.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-Cc-------------EEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l 71 (474)
+.+|+|||+|.||...+..|++.. ++ |++.|+++++++++.+..... .-+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 568999999999999999998753 33 899999999888877643110 00223 45777777655
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+.+|+||+|+|..-. ..++. ..++.|.-+++.+. ....+.++.+..++.|+.++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAK---ACIELKKHLVTASY-VSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEE
Confidence 669999999998643 33333 33456777888873 345666777777777876553
No 181
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.91 E-value=4.9e-05 Score=77.77 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=68.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG- 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~~- 84 (474)
..+|.|||+|.+|...+..+...|.+|+++|+++++.+++...... .+. ...+.+++.+.++.+|+||.+++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPG 242 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCC
Confidence 3569999999999999999999999999999999988777654321 011 1223344444444599999998431
Q ss_pred hhHHHHH-HHHHhcccCCCEEEecCCC
Q 011931 85 APVDETI-KTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl-~~l~~~l~~g~iiId~st~ 110 (474)
.....++ .+....++++.+|||.+..
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 1111122 4555667899999998753
No 182
>PRK06046 alanine dehydrogenase; Validated
Probab=97.91 E-value=7e-05 Score=75.40 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=79.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+|||||+|.+|...+..|... +. .|.+|||++++.+++.+......+..+..+++.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCC
Confidence 446899999999999999998743 33 68899999999998887542210112445778888874 8999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... +++ ...+++|..|...++..|.. +++...+-.+.-.|+|.
T Consensus 204 ~~P---~~~--~~~l~~g~hV~~iGs~~p~~-~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 204 RKP---VVK--AEWIKEGTHINAIGADAPGK-QELDPEILLRAKVVVDD 246 (326)
T ss_pred CCc---Eec--HHHcCCCCEEEecCCCCCcc-ccCCHHHHhCCcEEECC
Confidence 643 332 13468999998888876643 33332222233346664
No 183
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.89 E-value=0.00014 Score=73.51 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=77.5
Q ss_pred CcCcEEEEcccHhH-HHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAGLAVMG-QNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG-~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++++.+... + ..+++++++++. +..|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 46799999999555 568888887763 35688999999998887653 3 478899999886 336999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCe
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLL 128 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~ 128 (474)
+|+....+-++. .|..|+-|+--= +....+.+++.+..++.|..
T Consensus 75 tp~~~H~e~~~~----AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALA----ALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHH----HHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999876665543 345566554411 12235566666666665543
No 184
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.89 E-value=8.2e-05 Score=72.30 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=63.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|||+|||+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+++++++.+. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 479999998 99999999888764 67766 689988765443 11 135567788888765 9999988876
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ...+++.. .++.|.-++..+|+.
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~ 94 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGF 94 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCC
Confidence 5 44444433 344566565555553
No 185
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.88 E-value=0.00011 Score=71.88 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+||||||+|.||+.++..+.+. +.++. ++++.. ++....... ++..+++++++. .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l~---~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDALP---QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHhc---cCCCEEEECCC
Confidence 57999999999999999999876 45554 445432 222221111 245677888872 24899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCCc
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGE 138 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~v~~pvsgg~ 138 (474)
+. ...+.... .|..|.-++..+.. .+....++.+..++.|.. ++..+..|+-
T Consensus 71 ~~-~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~ 126 (265)
T PRK13303 71 HA-ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGI 126 (265)
T ss_pred HH-HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCH
Confidence 86 44444433 34566666655554 222334555666666754 4445544553
No 186
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.87 E-value=4e-05 Score=79.97 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=65.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|+|||+|.||..++..|...|. +|+++||++++...+.+.... ......+..+.+.. +|+||.|++.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVI~aT~s~ 253 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALAE---ADIVISSTGAP 253 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhcc---CCEEEECCCCC
Confidence 34689999999999999999999997 799999999998877765321 11222334444444 99999999876
Q ss_pred hhHHHHHHHHHhcc----cCCCEEEecCC
Q 011931 85 APVDETIKTLSAYM----EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l----~~g~iiId~st 109 (474)
..+-. .+.+.+.+ ..+.++||.+.
T Consensus 254 ~~~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 254 HPIIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CcEEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 54311 11222222 24568888874
No 187
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.83 E-value=0.00017 Score=70.48 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=68.6
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHH-CCCcEE-EEeCC-hHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|+||+|+| +|.||+.+++.+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++... +|+||.++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~~---~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVETD---PDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcCC---CCEEEECC
Confidence 46999999 69999999999986 477766 67854 33211 111110000 0124566788887433 89999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEEec
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~v~~ 132 (474)
|+. ...+.+.. .+..|.-+|..++.. +....++.+..++.|+.++-+
T Consensus 77 ~p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 77 TPE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIA 124 (266)
T ss_pred ChH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEE
Confidence 875 44444433 344565555545443 333444444444445544433
No 188
>PLN02494 adenosylhomocysteinase
Probab=97.83 E-value=0.00011 Score=76.16 Aligned_cols=98 Identities=10% Similarity=0.014 Sum_probs=72.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|+.+|..+...|.+|+++++++.+.......+ +.. .+.++++.. +|+||.+..+...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~~v- 322 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNKDI- 322 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCccc-
Confidence 4799999999999999999999999999999987755444333 222 367787777 9999987655321
Q ss_pred HHHHHHHHhcccCCCEEEecCCC-CchhHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE-WYENTERRE 119 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~ 119 (474)
+-.+.+..+++|.++++.+.. ...+...+.
T Consensus 323 --I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 323 --IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred --hHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 125566789999999999884 333444443
No 189
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.83 E-value=9.6e-05 Score=74.62 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=74.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|..+...++.+..- -.+|.+|||++++.+++.+..... +.++..++++++++.. +|+|+.+++.
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S 203 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTAD 203 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 445799999999998887766643 248999999999999888765421 1245667899999998 9999999976
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
.. -..+++. +.+++|..|.-.++-.|.
T Consensus 204 ~~-~~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 204 KT-NATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred CC-CCceecH--HHcCCCcEEEecCCCCCC
Confidence 42 1123321 357899988888776653
No 190
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.82 E-value=0.00012 Score=75.68 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=70.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+..+....+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 22 2357777776 99999987553
Q ss_pred HHHHH-HHHhcccCCCEEEecCCCCc
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~ 112 (474)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 2443 56677899999999887653
No 191
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.81 E-value=0.00017 Score=72.40 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.||..+|..++..|+ +|.++|+++++..... ......+ ..++..+.+.++ ++. ||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~~---aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IAG---SDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hCC---CCEEEECC
Confidence 589999999999999999999996 9999999988542111 1100000 013444456654 344 99999977
Q ss_pred CCC----h----------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAG----A----------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-.+ . .+.++...+.+.. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 321 1 1223334455544 455777777754
No 192
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.81 E-value=0.00022 Score=70.28 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=75.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876542110 111222223332333449999999998753
Q ss_pred HHHH-HHHHH-----hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 87 VDET-IKTLS-----AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 87 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.+.. +.... ..+.++.+++|.--.+.. | .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP-T-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC-C-HHHHHHHHCCCEEE
Confidence 3211 11100 123467889998754433 2 34444556666544
No 193
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.81 E-value=7.2e-05 Score=73.77 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=77.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+...... ...+....+..+.... +|+||.|+|.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~---aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAA---ADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCC---CCEEEECCcCC
Confidence 3579999999999999999999998 79999999999998876532100 0011112233333444 99999999876
Q ss_pred hhHH-H-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 85 APVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 85 ~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-.-. . -+. ...+.++.+++|..-.+.. | .+.+..+++|...++
T Consensus 204 m~~~~~~~~~--~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 204 MAKHPGLPLP--AELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCCC--HHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEec
Confidence 2100 0 011 1236778899998876543 3 455555667765543
No 194
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.81 E-value=6.2e-05 Score=75.32 Aligned_cols=101 Identities=16% Similarity=0.268 Sum_probs=66.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|..|...+..+... + -+|.+|+|++++.+++.+..... +..+..+.++++++.. +|+|+.|+|.
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s 202 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPS 202 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCC
Confidence 345799999999999998887653 3 38999999999999998776531 2346778899999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
.... .++. ...+++|..|+..++..|.
T Consensus 203 ~~~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 203 TTPA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp SSEE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CCCC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 7510 2222 2467899999998887664
No 195
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.81 E-value=0.00025 Score=59.85 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=67.5
Q ss_pred EEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCChhH
Q 011931 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~~v 87 (474)
|-|+|.|.+|..++..|.+.+.+|++.|+++++.+.+.+.+... +....+..+..+ .+++++.|+++++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988766321 122222223322 245699999999876332
Q ss_pred HHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 DETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 ~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
-.++..+ ..+.+ ..+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~-r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLA-RELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHH-HHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHH-HHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 2333333 33334 4455444332 23444555666544
No 196
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.81 E-value=0.00011 Score=73.19 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred EEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... ....... ..+++.+.+.++ ++. ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998877 9999999987543221 1110000 003344445544 344 9999998843
Q ss_pred Ch---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+++++.++.+.. +..++|..||..
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445566554 566777777644
No 197
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.81 E-value=9.8e-05 Score=76.97 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=54.3
Q ss_pred CcEEEEcccHhHHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dv 76 (474)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++........ .+ ..++..+++++++++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998666 34 45578999999999887765432210 00 1145567788888877 999
Q ss_pred EEEecCCC
Q 011931 77 IIMLVKAG 84 (474)
Q Consensus 77 Iil~vp~~ 84 (474)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999854
No 198
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.80 E-value=8.4e-05 Score=73.13 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=76.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+...... .+....+..+.+. .+|+||.++|.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCC
Confidence 357999999999999999999999 699999999999988876542110 0111112223333 4999999999763
Q ss_pred hHHHHHHH-HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 86 PVDETIKT-LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 86 ~v~~vl~~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.-..-... ....++++.+|+|..-.+ ..| .+.+..+++|...+
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcCeec
Confidence 21000000 113467789999997744 333 44455566776554
No 199
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.79 E-value=0.00016 Score=67.07 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+++.|+|. |.+|..++..|++.|++|++++|++++.+.+.+......+..+.. ..+.+++.+.+.++|+||.++|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 368999995 999999999999999999999999998888766432100001111 23344333334449999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
+.. ..........++.+++|..-..+
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCCC
Confidence 753 11112223445788999876553
No 200
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=0.00012 Score=73.07 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCC--Ccc-ccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDL--PLF-GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~--~~~-~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++. +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 58999999999999999999999 58999999988765322211110000 011 1234433 344 999999998
Q ss_pred CC
Q 011931 83 AG 84 (474)
Q Consensus 83 ~~ 84 (474)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
No 201
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.77 E-value=0.00037 Score=70.31 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=78.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+|+.+. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 468999999 6899999998875 46665 7899999999988765 35578899999876 8888888764
Q ss_pred ----ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 ----GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+ +. ...++.|.-|+---.....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e-~a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSA-LA---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHH-HH---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22333 22 233556765555434445677777777777777654
No 202
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.76 E-value=0.00015 Score=63.84 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......+.. ..+........+.++. +|+||++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 69999999 9999999999998875 79999999887665443221100 0012222233333444 99999987
Q ss_pred CCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+ .. ++++...+.+.- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334444444 66677777664
No 203
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.74 E-value=0.00026 Score=70.71 Aligned_cols=98 Identities=10% Similarity=0.169 Sum_probs=64.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC---CCCcc-ccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG---DLPLF-GFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~---~~~~~-~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+.....+.. ..+.. ...+.++ +.. +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 689999999988776654331100 00111 1234444 344 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+. .++++...+.++ .+..+||..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCh
Confidence 7641 123333445443 356677777763
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.74 E-value=0.00026 Score=71.01 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcC---C--CCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEG---D--LPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~---~--~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.+||+|||+|.||..++..++..| .+|.++|+++++.+...-...... + .+++.++++++ .+. +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~-l~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED-IKD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH-hCC---CCEEEEC
Confidence 358999999999999999999988 689999999875432111000000 0 02333456663 355 9999999
Q ss_pred c--CCC-------------hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 V--KAG-------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. |.. ..+.++...+.+.. |..++|..||..
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 9 321 12334445555553 667777777754
No 205
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00021 Score=66.29 Aligned_cols=191 Identities=12% Similarity=0.132 Sum_probs=114.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+.+||||.|..|.....+-...++... +-.|++++...+.+.. ...+.++.+.-+..+++|.-+|+.
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~ 78 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA 78 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH
Confidence 34689999999999996666555566555 4478888877765532 223334433322267788888764
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe---EEe-cCCCCCccccc--CCCccc-cCCCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL---YLG-MGVSGGEEGAR--HGPSLM-PGGSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~---~v~-~pvsgg~~~a~--~G~~i~-~gg~~~~~~ 157 (474)
.+..+... ..-.||+++++||.-... .+.+.+...|.. +.. +..+|.++... .++.+. ..+|+--+.
T Consensus 79 -~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 79 -LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred -HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 22222211 224589999999986533 344444444432 222 23455555443 333332 256777778
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 158 YIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 158 ~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
.++++...||.+. +.+-+ +.--......|.-......++.++..+.+..| .|.-+
T Consensus 153 i~q~la~emgg~~-------f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 153 IVQSLALEMGGEP-------FCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHHhCCCc-------eeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 8899999999763 33322 33333344444444556788899999999998 87443
No 206
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.72 E-value=0.00031 Score=67.54 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~v 81 (474)
.+||||||+|.||+.++..|.+.+ +++ .+++|++++.+++... ...++++++++ .. +|+|+.|-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~~---~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAWR---PDLVVEAA 70 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhcC---CCEEEECC
Confidence 468999999999999999987542 544 4789988887777542 35778899974 54 99999998
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchh--HH-HHHHHHHHcC-CeEEecCCCCCcc
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TE-RREKAMAELG-LLYLGMGVSGGEE 139 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~-~~~~~l~~~g-~~~v~~pvsgg~~ 139 (474)
... .+++....++ ..|.-++-.|.+-..+ .. ++.+..++.| -.|+.++-.||-.
T Consensus 71 ~~~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 71 GQQ-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred CHH-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 764 6666655544 4454444444443332 22 2333333333 3456655555543
No 207
>PRK04148 hypothetical protein; Provisional
Probab=97.72 E-value=0.00025 Score=61.31 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=73.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|.+||+| .|..+|..|++.|++|++.|.+++.++.+.+.+... .....+...-++-+. +|+|...=|++ +
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-D 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-H
Confidence 3689999999 999999999999999999999999888776654210 001123334456666 99999888886 6
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
+..-+-.++..+...-+|...|+..|
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 66666677777777667777777654
No 208
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.69 E-value=0.00043 Score=74.94 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=75.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
.+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++.+.+... +....+..+..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~----i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRA----VLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeE----EEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 4689999999999999999999999999999999999887654211 222223344433 2557999999999875
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
....++..+... .+...++-..+. + +..+.+++.|+.++=.|
T Consensus 494 ~~~~iv~~~~~~-~~~~~iiar~~~-~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREK-RPDIEIIARAHY-D----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHH-CCCCeEEEEECC-H----HHHHHHHHcCCCEEECh
Confidence 444444444443 333334333321 1 23334455677666544
No 209
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.68 E-value=0.00023 Score=73.35 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++++.. +|+||.|+....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~~-- 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNKD-- 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCHH--
Confidence 4799999999999999999999999999999999877666543 222 245666665 999999886542
Q ss_pred HHHHH-HHHhcccCCCEEEecCCC
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~ 110 (474)
++. .....+++|.++++.+..
T Consensus 270 --~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 --IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 446778999999998854
No 210
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.67 E-value=0.00011 Score=62.88 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCC-Cc-EEEEeCChHHHHHHHHhhhhcCCC-CccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKG-FP-ISVYNRTTSKVDETVERAKKEGDL-PLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G-~~-V~v~dr~~~~~~~l~~~~~~~~~~-~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||+||| .|.+|+.+.+.|.++- ++ +.++.++.+.-..+.......... .+.... +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 9999999999999853 34 446677663333333321100000 122223 33334 54 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ...+....+ +++|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 455555544 56889999999875
No 211
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.65 E-value=0.00036 Score=61.37 Aligned_cols=122 Identities=23% Similarity=0.333 Sum_probs=74.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|.|||+|.+|+.++.+|+..|+ +++++|.+.-....+..+.-. ....+-.-+....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999874333322221100 00000111222333333332 4555555543311
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.... ...+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~~----~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDNL----DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhhH----HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 3345678999999887 4555567777788899999988776
No 212
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.63 E-value=9.2e-05 Score=62.84 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=72.1
Q ss_pred cEEEEc----ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+|+||| .+.+|..+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~~ 66 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPPD 66 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-HH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCHH
Confidence 699999 799999999999999999999987753221 36678888884244 89999999985
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 67 -~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 67 -KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 788888887654 4566777666 344566677778899988643
No 213
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.62 E-value=0.00057 Score=74.55 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
.++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++++.+.+... +....+..+..++ ++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV----YYGDATQLELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE----EEeeCCCHHHHHhcCCccCCEEEEEeCCH
Confidence 35799999999999999999999999999999999999887654311 2222333444432 55799999999987
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....++..+.. ..|...|+-.+.. +...+.+.+.|+..+
T Consensus 476 ~~n~~i~~~~r~-~~p~~~IiaRa~~-----~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 476 EDTMKIVELCQQ-HFPHLHILARARG-----RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHH-HCCCCeEEEEeCC-----HHHHHHHHhCCCCEE
Confidence 555455444444 3344344433332 133445555666554
No 214
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.61 E-value=0.0007 Score=67.77 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCcccc-CCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGF-RDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~--~~~~~~-~s~~e~~~~l~~~dvIil 79 (474)
+..+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......+... .+.... .+.++ .+. ||+||+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIi 79 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVI 79 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEE
Confidence 334699999999999999999999987 899999998876554433221100 012222 33444 344 999999
Q ss_pred ecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.-.+. . ++++++.+..+- +..+++..||-
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 774421 1 223333344332 56677777763
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.61 E-value=0.00035 Score=71.53 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=57.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|||+|.||.-.|++|.++| ..|++.||+.+++.+++++... .+.++.++...|..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 457999999999999999999999 5899999999999999886531 12345555555555999999987654
No 216
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.59 E-value=0.00024 Score=72.77 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=71.5
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC-CC-CccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG-DL-PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~-~~-~~~~~~s~~e~~~~l~~~dvIil 79 (474)
....+++|||+|.++...+..++.-. -+|.+|||++++.+++.++..... +. .+..+++.++++.. +|+|+.
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvt 229 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTY 229 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEE
Confidence 34567999999999999998887632 389999999999998887653210 01 25678899999988 999999
Q ss_pred ecCCCh---hHHHHHHHHHhcccCCCEEEecCC
Q 011931 80 LVKAGA---PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 80 ~vp~~~---~v~~vl~~l~~~l~~g~iiId~st 109 (474)
|++... ....+++ ...+++|..|+..+.
T Consensus 230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 230 CNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred ccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 997542 1112332 235678888865443
No 217
>PRK11579 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.00096 Score=67.74 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=70.8
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.+|.. .+..+... ++++. ++|+++++.. +... ....+++++++++. .+.|+|++|+|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999984 55666553 67776 7899987653 2111 24567899999864 347999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEE-ecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKGDCII-DGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+.++. .++.|+.|+ +-- .....+.+++.+..++.|+.+
T Consensus 75 ~~H~~~~~~----al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKA----ALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHH----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 765554443 344565544 411 122345566666666666543
No 218
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.58 E-value=0.00085 Score=67.02 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=64.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. ...+..+.+++++ +. +|+||+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvi 77 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIV 77 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEE
Confidence 34699999999999999999998876 79999998876554433221110 0023434566664 44 999999
Q ss_pred ecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 76432 11 22233444444 467778888764
No 219
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.56 E-value=0.00074 Score=69.64 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=73.0
Q ss_pred EEEEcccHhHHHHHHHHHHCC-C-cEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|.|+|+|.+|+.++..|++.+ + +|++.||+.++++++.+..... ++.. ..+.+++.+-++++|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999886 4 8999999999998887531100 1111 22344333334449999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG 137 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg 137 (474)
. ....+++.. ++.|.-.||.+. ......++.+..++.|+.++. ++...|
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 5 445555443 446788999333 123444555666667776553 455444
No 220
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00052 Score=67.23 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+.+||+|+|.+|+.+|.++..-|..|..||.-... ++....+ +. ..+.+|+... +|+|-+-+|-..+.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~g-------vq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFG-------VQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhcc-------ce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999854321 2222222 22 3478888887 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (474)
+.++ ++.+..+++|-.||+++.+...++..+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566777999999999999988888888877754
No 221
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.54 E-value=0.00019 Score=74.33 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=56.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|.|||+|.||..++..|++.|. +++++||++++.+.+.+..... .+...+++.+.+.. +|+||.|++.+
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~~---aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIKK---ADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhcc---CCEEEECcCCC
Confidence 34689999999999999999999996 7999999999998888754200 12223334444444 99999999887
Q ss_pred hh
Q 011931 85 AP 86 (474)
Q Consensus 85 ~~ 86 (474)
..
T Consensus 254 ~~ 255 (414)
T PRK13940 254 EY 255 (414)
T ss_pred Ce
Confidence 43
No 222
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.53 E-value=0.00086 Score=73.38 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=76.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+... +....+..++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKV----FYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeE----EEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999887654321 222333444443 3567999999998875
Q ss_pred hHHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
....++..+... .|. .+++-..+ .+....+.+.|+..+..+
T Consensus 477 ~n~~i~~~ar~~-~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 477 TSLQLVELVKEH-FPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 544444444333 344 34443322 133445666777766433
No 223
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.52 E-value=0.00038 Score=63.05 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=57.0
Q ss_pred cCcEEEEcccHh-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||.|.| |..+|..|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc
Confidence 357999999997 88899999999999999998742 22334455 999999999864
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.. +.++++.+|||.+...
T Consensus 100 ----ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ----LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ----eecH--HHccCCeEEEEccCCC
Confidence 2211 2356788999998753
No 224
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.51 E-value=0.0018 Score=64.01 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHH---HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIA---EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~---~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
....|+||+|+|.|++-.++.|. +.+|.|+ ++||+.+++.++++...-. +.+.+.+.+|+++. ..+|+|.+.
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVyi~ 79 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVYIS 79 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEEeC
Confidence 34468999999999999999885 3467765 7799999999998865321 35788999999987 345999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecC-CCCchhHHHHHHHHHHcCCeEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.|.++..+-+..-+. . ...++++.- .......+++.+..+.+|+.|.+.
T Consensus 80 ~~~~qH~evv~l~l~-~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALN-K--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred CCCccHHHHHHHHHH-c--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 999876554433222 1 223555521 223356777888888889877664
No 225
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.49 E-value=0.00041 Score=67.66 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=65.1
Q ss_pred EEEEcc-cHhHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 10 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|+|||+ |.||..++..|+..| .+|.+||+++++++.......+.. ..+++.++++.+.+++ ||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999998 799999999877655443221100 0134555666666666 9999996
Q ss_pred cCCC---------------hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.-.+ ..++++.+.+.... +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 6321 11333444555544 677788887643
No 226
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.49 E-value=0.00035 Score=70.81 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=60.1
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+|+||+|||+ |.+|..+++.|.++ ++++. ++++. +..+.+.+............+.+.++. ..+++|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 3579999996 99999999999976 56765 45543 322222221110000000012233332 1234999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
++ ...++...+. +.|..|||.|+...-
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 97 4444444433 468999999987643
No 227
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.44 E-value=0.0014 Score=64.69 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~~-~~s~~e~~~~--l~~~dvIil~ 80 (474)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +.+.+++++. +++.|+||.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888754 55665 7899886432 223222 2333 4678888863 3458999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+.. ....... .++.|..+||.+...
T Consensus 78 T~a~~-H~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHH---HHHcCCeEEECCccc
Confidence 99863 3333333 345789999988754
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.41 E-value=0.0013 Score=69.18 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=63.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~-l~~~dvIil~vp~~~ 85 (474)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+..... -+.. ..+...+.+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876522100 0111 1122222222 45699999999886
Q ss_pred hHHHHHHHHHhcc-cCCCEEEec
Q 011931 86 PVDETIKTLSAYM-EKGDCIIDG 107 (474)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~ 107 (474)
.....+......+ ....+|+..
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE
Confidence 4444443333333 444555544
No 229
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.40 E-value=0.0014 Score=65.25 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCC----CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGD----LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~----~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|||+|.+|.++|..|+..| .++.++|+++++++.......+... .++..+.+.+ .++. ||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999998 5899999999887765543221100 0122233433 3343 9999999875
Q ss_pred Ch----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. . ++++...+..+- +..+||..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1 223334444444 66778777763
No 230
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.40 E-value=0.0015 Score=66.13 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=73.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC----------CCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK----------GFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~-~~~~~~s~ 64 (474)
..+|+|+|+|.||+.+++.|.++ +.+|. ++|++ .++...+.+.......+ ....+.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999998765 34544 66853 33333333321100000 00123477
Q ss_pred HHHHhhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
++++.. ..+|+|+.|+|+.... +...+-+...+..|..||..+..... ...++.+..++.|..|. .+.+.++
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 888754 2489999999974321 22223334556778888765432211 23455555566677654 3444433
No 231
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.36 E-value=0.00066 Score=68.88 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhh-cCCCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKK-EGDLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|||+ |.+|..+++.|.++ ++++. +++++....+.+.+.... .+...... ..+.+++.+. +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 58999998 99999999999977 56777 556554322222221110 00000011 1144555544 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ ...++...+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 87 4444544443 4689999999875
No 232
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.32 E-value=0.0041 Score=53.09 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH--HHhhCCCCCCCccC
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK--AYDRNADLANLLVD 389 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~--~~~~~~~l~~ll~~ 389 (474)
|+++-.|.++|-+.++.+...+|++.+-++. ++|.+++.++-+.| --.|+.++.... ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4677899999999999999999999997753 49999999999876 457888776544 3333221
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 428 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~ 428 (474)
+.|. ++-...+++-+++.|-+.|+|+|..+.+.++|.
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2221 223456678899999999999999999998775
No 233
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.29 E-value=0.0035 Score=65.95 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=73.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-ccc-CCHHHHH-hhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGF-RDPESFV-NSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~-~s~~e~~-~~l~~~dvIil~vp~ 83 (474)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+++.+.+.. ..+ ... .+.+.+. ..++++|.||+++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 5789999999999999999999999999999999998888765321 011 111 2233221 224569999988887
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+ ...-.+..++..+....+|+-..+.. ....+...|+.++-
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~------~~~~~~~~g~~~vi 348 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA------YVDLVEGLGIDIAI 348 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc------hHHHHHhcCCCEEE
Confidence 5 33333333444455556666554432 12334555665553
No 234
>PRK10206 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.0029 Score=64.28 Aligned_cols=113 Identities=9% Similarity=0.165 Sum_probs=71.2
Q ss_pred cCcEEEEcccHhHHH-HHHHHHH--CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAE--KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+.||||||+|.++.. .+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. .+.|+|++|+|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 468999999997753 3454533 356775 789997654 4443321 14567899999864 34799999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+-++.. ++.|+ ++++-- .....+.+++.+..+++|+.+.
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 74 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred chHHHHHHHHH----HHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 98665544433 33454 555521 1123566677777777776543
No 235
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.0017 Score=65.67 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=56.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhc------------CCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKE------------GDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~------------~~~~~~~~~s~~e~~~~l~ 72 (474)
|+||||+|+|.||+.+++.+.+. +++|. ++|++++....+.+..... ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 57999999999999999988764 56776 5677766555544421000 00013333455555544
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||.|+|... ..+... .+++.|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 677777776642 222222 223345666665553
No 236
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.27 E-value=0.0004 Score=63.01 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------------------c---CC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------------------F---RD 63 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--------------------~---~s 63 (474)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++...... .+.. . ..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999999999999999888776654321 1111 1 12
Q ss_pred HHHHHhhcCCCcEEEEecC-CChhHHHHH-HHHHhcccCCCEEEecCC
Q 011931 64 PESFVNSIQKPRVIIMLVK-AGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp-~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (474)
+.+.+.. +|+||.++- ++.....++ ++-...++++.+|+|.|-
T Consensus 96 f~~~i~~---~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAP---ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH----SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhh---CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3344454 899997442 222233333 556667889999999875
No 237
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.25 E-value=0.0027 Score=60.44 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=76.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQ 72 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~ 72 (474)
+.++|+|.|+|.+|+.++..|.+.|.+|+ +.|. +.+.+.+..+....-. +... .-+.+++...
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~--~~~~~~~~~~~~i~~~-- 105 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL--GFPGAERITNEELLEL-- 105 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc--cCCCceecCCccceee--
Confidence 34689999999999999999999999998 7787 6666655544321100 0100 1123333332
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+||+++-|.+...-..+.+.. ++ =.+|+..+|... +.+..+.|.++|+.|+.-
T Consensus 106 ~~Dvlip~a~~~~i~~~~~~~----l~-a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 106 DCDILIPAALENQITADNADR----IK-AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cccEEEecCccCccCHHHHhh----ce-eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 489999998876433333333 32 467888888764 366778889999988764
No 238
>PRK15076 alpha-galactosidase; Provisional
Probab=97.25 E-value=0.0012 Score=68.90 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=51.5
Q ss_pred cCcEEEEcccHhHHHHHH--HHH----HCCCcEEEEeCChHHHHHHHH---hhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETVE---RAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|+||+|||+|.||...+. .++ -.|.+|+++|+++++++.... ..... + ..++..+++..++++. +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 479999999999976655 554 235689999999987663221 11100 0 1145667777777777 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||+++-.+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999999775
No 239
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.24 E-value=0.0023 Score=62.85 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=64.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|||||+|.+|..++..+.+. +.++. ++|+++++.. ++.+.. ++. .+.+.+++++. ++.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 56765 7899887533 233222 232 34578888764 347999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+.+ .. ...++.|..|+|.+...
T Consensus 75 ~~H~e-~a---~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHAR-HA---RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHH-HH---HHHHHcCCEEEECCccc
Confidence 74433 22 23356789999987654
No 240
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.22 E-value=0.0021 Score=64.25 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT--SKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++.......+ .+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 68999997 9999999999999987 499999965 443222111000 00 002333344444 444 9999
Q ss_pred EEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCCchhH
Q 011931 78 IMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (474)
Q Consensus 78 il~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (474)
|+++..+. . ++++...+.+.. +..+||..+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHH
Confidence 99996321 1 233334455544 4555666665443333
No 241
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.18 E-value=0.018 Score=55.11 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=98.9
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe---cC
Q 011931 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG---MG 133 (474)
Q Consensus 57 ~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~---~p 133 (474)
++..+++..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|+++.......+.+.++.+...+ +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57778888899988 9999999999976778899999999999999999999877666666666555444333 33
Q ss_pred CCCCcccccCCCccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 134 VSGGEEGARHGPSLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 134 vsgg~~~a~~G~~i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
|-|.+ |..+..-| ++++.+++.+|.++.+... +.+-..=.+...-|. ....+...+.+.+-+..+
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~a-------y~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~ 271 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNA-------FKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAV 271 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 33332 55333333 8899999999999988753 333222222222332 133344455556666666
Q ss_pred HHhCCCCHH
Q 011931 212 KSVGKLTNE 220 (474)
Q Consensus 212 ~~~G~l~~~ 220 (474)
.+.-|.+.+
T Consensus 272 tqIlgAP~~ 280 (342)
T PRK00961 272 TQILGAPAD 280 (342)
T ss_pred HHHhcCcHH
Confidence 665435544
No 242
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.18 E-value=0.002 Score=66.29 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred CcEEEEcccHhHHHH-HHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cC-C-C-----Ccccc--CCHHHHHhhcCC
Q 011931 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKK----EG-D-L-----PLFGF--RDPESFVNSIQK 73 (474)
Q Consensus 8 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~-~-~-----~~~~~--~s~~e~~~~l~~ 73 (474)
|||.++|+|+||++. ...|.+.|++|++.|++++.++.+.+++.- .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 689999999999854 888889999999999999999988876421 00 0 0 11111 123445444445
Q ss_pred CcEEEEecCCChhHHHHHHHHHhccc--------CCCEEEecCCCC
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYME--------KGDCIIDGGNEW 111 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~ 111 (474)
+|+|.++|+.. ..+.+...+.+.|. ++-+|+.|=|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999999865 55666655555442 233788888875
No 243
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0016 Score=63.29 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=72.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEec--CC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLV--KA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~v--p~ 83 (474)
.-||.|||-|.+|.+-|+-..--|-+|++.|+|.+++..+-..... ++ +..++...+.+.+.++|+||-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 4589999999999999999888899999999999998877654321 22 23445555555555599999876 33
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.++=+-+.++....++||.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 2222334577788899999999965
No 244
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.16 E-value=0.002 Score=67.31 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=73.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--------C--CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--------G--FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--------G--~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~d 75 (474)
+.+|||||+|.+|+.++..|.++ | .+| .++|+++++...+. .. ....+++++++++. ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~~------~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-LP------GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-Cc------ccceeCCHHHHhhC-CCCC
Confidence 46899999999999999887654 3 344 47799977643211 00 23467788998864 2369
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC-CchhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYENTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
+|+.+++......+. +...|..|..|+..... ......++.+..+++|+.+. .+.|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998764333333 33456678878754321 11223444555566677543 4444444
No 245
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.16 E-value=0.0037 Score=59.11 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=73.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh----------HHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKKEGDLPLFG--FRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~ 73 (474)
.++|+|.|+|++|+.+|..|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 4689999999999999999999988 455789887 6555544433211 1111 112233332 2 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
||+++-|.+.+.-.... .+.+ .=.+|+...|... +.+..+.|.++|+.|++-
T Consensus 98 ~DVlipaA~~~~i~~~~----a~~l-~a~~V~e~AN~p~--t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 98 VDIFAPCALGNVIDLEN----AKKL-KAKVVAEGANNPT--TDEALRILHERGIVVAPD 149 (217)
T ss_pred ccEEeeccccCccChhh----Hhhc-CccEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 99999998876322222 2233 2467888888653 236777888999888754
No 246
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.15 E-value=0.0032 Score=59.93 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=68.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCc---EEEEeCC----hHHH-------HHHHHhhhhcCCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
.++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. ..+.+.... .....++.+.+..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~-- 97 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG-- 97 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc--
Confidence 35899999999999999999999975 9999999 4443 222222110 0111256566665
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+|+||-++|.+...+.+ ...+.++.+|.+.+|-.+ +...+...+.|..
T Consensus 98 -~dvlIgaT~~G~~~~~~----l~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 -ADVFIGVSRPGVVKKEM----IKKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred -CCEEEeCCCCCCCCHHH----HHhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 99999999855322233 334457788889885443 2344444445654
No 247
>PLN02602 lactate dehydrogenase
Probab=97.14 E-value=0.0049 Score=62.52 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=61.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. ...+....+.++ ++. ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998876 79999999876654433221100 001222235555 344 99999986
Q ss_pred CCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-.+ .. ++++...+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 432 11 12222344443 466778888764
No 248
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.13 E-value=0.0029 Score=59.02 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=31.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 39 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 39 (474)
..+|+|||+|.||+.+|..|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999999 69999998
No 249
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.13 E-value=0.02 Score=54.90 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=98.9
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 57 ~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++..+++..|+++. +|++|+-+|-+.....+++.+++.+++|.+|.++.|+++.....+.+.+.++.+...++.. +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 57788888999988 9999999999976778899999999999999999999877666666666555554444321 2
Q ss_pred CcccccCCC-ccccC-CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011931 137 GEEGARHGP-SLMPG-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 137 g~~~a~~G~-~i~~g-g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~ 214 (474)
+.++.. |. .+.-| .++++.+++.+|.++.+... +.+...=.+...-|. ....+...+.+.+-+..+.+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~a-------y~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~I 272 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKA-------FKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKI 272 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCe-------eecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 223333 44 44333 38999999999999988753 333222222222222 123334455556666556665
Q ss_pred CCCCHH
Q 011931 215 GKLTNE 220 (474)
Q Consensus 215 G~l~~~ 220 (474)
-|.+.+
T Consensus 273 lgAP~~ 278 (340)
T TIGR01723 273 LGAPAD 278 (340)
T ss_pred hcCcHH
Confidence 435544
No 250
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.12 E-value=0.002 Score=68.14 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc------------CCCCccccCCH------HHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE------------GDLPLFGFRDP------ESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~------------~~~~~~~~~s~------~e~~ 68 (474)
..++.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... +++ .+..+.. +.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gY-a~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGY-AKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccc-eeecCHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999877666543210 000 0000000 0022
Q ss_pred hhcCCCcEEEEec-----CCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 69 NSIQKPRVIIMLV-----KAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 69 ~~l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.++++|+||.++ |.+. -+.++....+++|.+|||.+..
T Consensus 243 e~~~~~DIVI~TalipG~~aP~---Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPK---LITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCe---eehHHHHhhCCCCCEEEEeeeC
Confidence 3344588888887 3331 1224556678888888888764
No 251
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.0018 Score=63.36 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.3
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|. +|.++|..|.+.|..|+++++... ++.+.+.+ +|+||.+++.+.-
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999988 999999999999999999986421 34455566 9999999988643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 221 3468899999998753
No 252
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0029 Score=61.99 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=78.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999987654211 0001111221111 1128999999998743
Q ss_pred HHH---HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDE---TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-.. .+. ...+.++.++.|.--.+..+ .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 321 122 34577899999987665433 344555667766554
No 253
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0019 Score=63.20 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=59.2
Q ss_pred CcEEEEcccHh-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.+++ +|+||.+++.+.-
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 47999999888 999999999999999997632 2355666666 9999999997643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 5688999999998764
No 254
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0049 Score=64.09 Aligned_cols=130 Identities=16% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hhcCCCCccccC--CHHHHHhhcCCCcEEE
Q 011931 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KKEGDLPLFGFR--DPESFVNSIQKPRVII 78 (474)
Q Consensus 2 ~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~~~~~~~~~~~--s~~e~~~~l~~~dvIi 78 (474)
+..-.++||.|+|+|.-|.++++.|.+.|++|+++|.++.. ....... ... ++.... ...+.... +|+|+
T Consensus 2 ~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~~---~d~vV 74 (448)
T COG0771 2 MEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLAE---FDLVV 74 (448)
T ss_pred cccccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhcccc---CCEEE
Confidence 33344789999999999999999999999999999976654 1111110 000 111111 11133333 89988
Q ss_pred Eec--CCC-hhHHHHHH---------HHHhcc--cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 79 MLV--KAG-APVDETIK---------TLSAYM--EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 79 l~v--p~~-~~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
..= |.. ..++.... ++.-.. ...-+-|..||+...+|.-+...++..|....-++-.|.|
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 753 222 22332221 223222 2335557788888777777788888888766655555543
No 255
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.05 E-value=0.002 Score=58.12 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=51.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|||+||| .|..|+.++.-..+.||+|+.+-||++++..+....... .. .-+++.+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 7999999 799999999999999999999999999986542110000 00 113444444455589999998654
No 256
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.99 E-value=0.005 Score=49.12 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=46.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 45799999999999999999998 568888886 57777776654
Q ss_pred hHHHHHHHHHhcccCCCEEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 3322 1233456778888763
No 257
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.97 E-value=0.0046 Score=60.91 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=73.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~---~e~~~~l~~~dvIil~vp~ 83 (474)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+......+.......+. .+.... +|+||-++|-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~---~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhh---cCEEEEcCCC
Confidence 479999999999999999999997 799999999999988765321000000111122 223333 8999999986
Q ss_pred ChhHH--HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVD--ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~--~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+-.-. ..+. ...+.++.++.|.--.+..+ .+.+..+++|...++
T Consensus 205 Gm~~~~~~~~~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCCCC--HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 52100 0011 12356778999987654333 344555666765543
No 258
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.003 Score=62.69 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=82.2
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCC-CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGD-LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~~-~~s~~e~~~~l~~~dvIil~v 81 (474)
+|+||+||| .|.-|..|.+.|+.+- .+|..+..+..+-+.+.+...+..+ ..... ..+.+++ ....||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 478999998 7999999999998774 3766666554333333332221000 00111 1123333 123489999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHH-HHc--CCeEEecCCCCCcccc---cCCC--ccccCCC-
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAM-AEL--GLLYLGMGVSGGEEGA---RHGP--SLMPGGS- 152 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~--g~~~v~~pvsgg~~~a---~~G~--~i~~gg~- 152 (474)
|++. ..+....+ +.+|..|||+|+-.--...+..+.+ ... +-.+++--+.|-++-. ..+. .-.+|+-
T Consensus 79 Phg~-s~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHGV-SAELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred Cchh-HHHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 9984 33333333 3467779999997633322333222 111 1123333344444322 1233 3346663
Q ss_pred HHHHHHHHHHHHH
Q 011931 153 FEAYKYIEDILLK 165 (474)
Q Consensus 153 ~~~~~~v~~ll~~ 165 (474)
..+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 3444556777765
No 259
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.93 E-value=0.0096 Score=55.67 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=52.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|-|||.|.+|...+..|.+.|++|++++++.. .+..+.+.+ .+.... ...+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 4799999999999999999999999999987742 334444332 122211 1111 1133499999998876
Q ss_pred hHHHHHHHHH
Q 011931 86 PVDETIKTLS 95 (474)
Q Consensus 86 ~v~~vl~~l~ 95 (474)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5665554433
No 260
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.93 E-value=0.0052 Score=60.81 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCCh---HHHHHHHHhhhhcC-CCCcccc--CCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKKEG-DLPLFGF--RDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~~-~~~~~~~--~s~~e~~~~l~~~dvIil~ 80 (474)
+++.|+|+|-+|++++..|++.|.+ |+++||++ ++.+++.+.....+ ...+... ++.+++.+.+..+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666655332110 0001111 1222222223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+|.+-. .+. .+.. ...+.++.+|+|.--.+..+ .+.+..++.|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeee
Confidence 987621 010 0100 13467788999987665433 34455566666544
No 261
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.91 E-value=0.0039 Score=56.71 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=51.5
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCC
Q 011931 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|.|+|+ |.+|..++..|++.|++|++..|++++.+. ..+.. -+.. ..+++.+.+.++.+|.||.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~----~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE----IIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE----EEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc----cceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998876 11110 0111 235555555566699999999864
No 262
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.90 E-value=0.016 Score=61.06 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++.... +..+.......+.... +|+||.+.-.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCCC
Confidence 4579999999999999999999999999999985 3333322221110 0012222223344444 8999987643
No 263
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.89 E-value=0.0062 Score=64.57 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=39.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (474)
-.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999999999999887776553
No 264
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.88 E-value=0.0025 Score=65.42 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHH-HhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF-VNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~-~~~l~~~dvIil~vp 82 (474)
+++||+|+| .|..|..|.+.|.++ +++|+.+.++....+.+................+.+.. ++. +|+||+++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~---~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSD---VDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcC---CCEEEEcCC
Confidence 456899999 599999999999988 67999887765443322221100000001111112211 244 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+ ....++.. +..|..|||.|+..
T Consensus 114 ~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 114 HG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred HH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 86 44444443 44689999999865
No 265
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.87 E-value=0.0046 Score=64.98 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=73.4
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+|+|||+ |.+|..+.++|.+.|| +|+.+|+..+.+ . ++.++.+++|+-.. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999998 566666553311 0 36678899998665 89999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCch-------hHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-------NTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~~~~~~~~l~~~g~~~v~ 131 (474)
|.. .+.++++++... .-..+||- |.+.++ ..+++.+..++.|+++++
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 985 778888777653 23344443 333222 123455556677888775
No 266
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.011 Score=61.77 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=66.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~-- 85 (474)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++...... .... ......+.+.+. +|+||.+.+.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~-~~~~------~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCP-YIHE------RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhH-HHhh------hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211 0000 011233333344 898888875442
Q ss_pred -hHHHHHH---------HHH-hc--c-cCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 -PVDETIK---------TLS-AY--M-EKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 -~v~~vl~---------~l~-~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.++...+ .+. .. . ....|-|..|++.-.++.-+...|...|..
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~ 130 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIP 130 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence 1222221 111 11 1 112355677777765666666777766643
No 267
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.84 E-value=0.011 Score=58.90 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=47.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC----CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD----LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~----~~~~~-~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|||+|.+|.++|..|+..+. ++.++|+++++++.......+... .+.+. ..+.+++ +. ||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 799999998765543322211000 01122 2344433 33 99999987
Q ss_pred CC
Q 011931 82 KA 83 (474)
Q Consensus 82 p~ 83 (474)
-.
T Consensus 77 G~ 78 (307)
T cd05290 77 GP 78 (307)
T ss_pred CC
Confidence 53
No 268
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.82 E-value=0.015 Score=61.52 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-----KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECC
Confidence 45899999999999999999999999999998753 1223333221 11111222333344 89988873
Q ss_pred --CCC-hhHHHHHH---------HHHhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 --KAG-APVDETIK---------TLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 --p~~-~~v~~vl~---------~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+. ..+....+ +++..+.+.. |-|..|++.-.++.-+...|...|...
T Consensus 86 gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 86 SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 111 12222111 1111122223 446666666555555566666666543
No 269
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.82 E-value=0.00093 Score=54.61 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=58.0
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|.|+|+|.+|..++.++. ..|+.+ .++|.++++..+... ++....+.+++.+.+ +.|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~--------gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG--------GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEET--------TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC--------CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999886544 557765 588999886532111 366777899988877 599999999985
Q ss_pred hHHHHHHHHHh
Q 011931 86 PVDETIKTLSA 96 (474)
Q Consensus 86 ~v~~vl~~l~~ 96 (474)
.+.++..++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56777766655
No 270
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.81 E-value=0.0094 Score=58.63 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=79.8
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..||.|.| .|.+|..+-.+|...|++ .++..+|.+- ++. .++.++.+.+|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 35799999 899999999999999998 7777776521 111 1367888999987741 259999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.++++++...- -+.+||-.+.......+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 6777777766522 2234443333332223566677778899988754443
No 271
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.81 E-value=0.0052 Score=61.23 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=58.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CCCCcccc-C--CHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GDLPLFGF-R--DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-~~~~~~~~-~--s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+ |.+|.++|..|+..|. ++.++|++ +++...-...+. ....+..+ . ++.+..+. +|+||++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~d---aDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKG---ADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCC---CCEEEEe
Confidence 58999999 9999999999998885 79999998 322111111110 00023322 2 22333343 9999998
Q ss_pred cCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. . ++++.+.+.++ .+..+||..||-.
T Consensus 76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 75431 1 22333444444 4678888888843
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.78 E-value=0.0071 Score=60.52 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=59.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcC-CCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQ-KPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~-~~dvIil~vp~~~~ 86 (474)
.+|+|+|+|-+|..-.+-....|.+|+++|++++|.+.+.+.++.. ....+..+..+.++ ..|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997766555555558999999999999998888776531 22211122222211 1789998888 555
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..+ ..|+++-.++-.+..
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHHhcCCEEEEECCC
Confidence 55444 345555555555544
No 273
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.78 E-value=0.02 Score=53.54 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=68.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+.- .....+-.-+....+.+..+. +++-+.+.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEEehhc
Confidence 4579999999999999999999997 89999988432222221100 000000001111222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .. .+...+..-++||+++... ..-..+.+.+...++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~~-~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDNF-ATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 1223345668999887553 344445566677788888876544
No 274
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.77 E-value=0.021 Score=60.83 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=67.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.+. .+.......+.++. +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776555443221 11111122333444 89888865 3221
Q ss_pred h-HHHHHH---------HHHhcc------c-C-CCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 86 P-VDETIK---------TLSAYM------E-K-GDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 86 ~-v~~vl~---------~l~~~l------~-~-g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
. +...-+ ++.-.+ . + ..|-|..|+++-.++.-+...|...|...
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 1 111110 121111 1 2 23446677777555555667777766543
No 275
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.76 E-value=0.016 Score=58.61 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=68.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh---hcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK---KEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~---~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|.|||+|.+|+.+|..|+..|+ +++++|++.-....+..+.- ...+.+..-+....+.+..+. +++-+.+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEEEe
Confidence 4579999999999999999999998 89999988522211111000 000000000111122222221 455565654
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.... ...++++ +..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~~-~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDNF-DTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 4321 2223333 44568999998543 333334455567788888766544
No 276
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.74 E-value=0.006 Score=59.69 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=59.0
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||-|. +|.++|..|.+.|..|+++++. +.++++.+++ +|+||.+++-+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------------------TKNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------------------CCCHHHHHhh---CCEEEEcCCCccc
Confidence 4799999888 9999999999999999999754 1245666666 9999999966543
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5678999999998654
No 277
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=96.70 E-value=0.012 Score=48.15 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~ 263 (474)
-.++++|++.|++.+..+++++|...+|++.| +|..++.+.+.. +.... ...+.-+-.+++ + =+.+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~~--d~ri~-------~~~~~pg~g~GG-~---Clpk 67 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAANT--DPRIG-------PHYLRPGPGFGG-S---CLPK 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHHT--STTTT-------SSS-S-SSS--S-S---CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHcc--Ccccc-------cccCCCCCCCCC-c---chhh
Confidence 36889999999999999999999999999999 999999988731 11111 111111101222 1 2334
Q ss_pred hcCCCccHHHHHHHHHHcCCCcccHHHH
Q 011931 264 KTGMKGTGKWTVQQAADLSVAAPTIEER 291 (474)
Q Consensus 264 ~~~~k~tg~~~~~~a~~~gv~~p~~~~r 291 (474)
|.. .....+.++|.+.++++.-
T Consensus 68 D~~------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 68 DPY------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp HHH------HHHHHHHHTTSHHHHHHHH
T ss_pred hHH------HHHHHHHHcCCCHHHHHHH
Confidence 443 5667889999998866443
No 278
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.68 E-value=0.0084 Score=60.35 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=74.4
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+.++|.|+|+ |.||+.+++.|+++ | .++++++|+++++..+..+... .. ..++.++... +|+|+.+..
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts 224 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVAS 224 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCc
Confidence 3467999998 89999999999864 5 5899999999888887654321 11 1245555555 999998886
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+..+ +++. ..+.++.++||.+-- .+... .+...|+.+++.++.-
T Consensus 225 ~~~~~--~I~~--~~l~~~~~viDiAvP--RDVd~---~v~~~~V~v~~gG~V~ 269 (340)
T PRK14982 225 MPKGV--EIDP--ETLKKPCLMIDGGYP--KNLDT---KVQGPGIHVLKGGIVE 269 (340)
T ss_pred CCcCC--cCCH--HHhCCCeEEEEecCC--CCCCc---ccCCCCEEEEeCCccc
Confidence 54321 1211 234688999998753 33322 1123678887766543
No 279
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.67 E-value=0.015 Score=51.99 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=50.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|-|||.|.+|...++.|.+.|++|++++.+ ..+++.+.. .+... ..+++ ..+..+|+||.++.++ +
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 57999999999999999999999999999643 334443321 11111 11111 1234489999988775 5
Q ss_pred HHHHHHHHH
Q 011931 87 VDETIKTLS 95 (474)
Q Consensus 87 v~~vl~~l~ 95 (474)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 665554443
No 280
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.66 E-value=0.016 Score=49.05 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=60.7
Q ss_pred cccHhHHHHHHHHHHC----CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 14 GLAVMGQNLALNIAEK----GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 14 GlG~mG~~lA~~L~~~----G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|.||+.++..|.+. +++|. ++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999876 46665 77888 1110 0111111 135678999998832 29999999554 455
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCch---hHHHHHHHHHHcCCeE
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYE---NTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~ 129 (474)
.+.+ .+.|+.|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 4443 4456688889888765433 2223334444556654
No 281
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.66 E-value=0.0032 Score=56.92 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=57.6
Q ss_pred CCcCcEEEEcccHhHHHHHH-HHH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 5 KQLTRIGLAGLAVMGQNLAL-NIA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~-~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.++.++.|||.|++|++++. ++. ++|+++. +||.+++++-..... ..+.-.+++++.++. .+.|+.|+||
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtV 154 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTV 154 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEc
Confidence 35678999999999999984 343 6688765 899999866443321 123334566777764 2479999999
Q ss_pred CCChhHHHHHHHHHh
Q 011931 82 KAGAPVDETIKTLSA 96 (474)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (474)
|.. ....+.+.|..
T Consensus 155 Pa~-~AQ~vad~Lv~ 168 (211)
T COG2344 155 PAE-HAQEVADRLVK 168 (211)
T ss_pred cHH-HHHHHHHHHHH
Confidence 985 55666665554
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.65 E-value=0.024 Score=53.06 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=47.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~---~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+|.|||.|.+|..-++.|++.|.+|++++.+.. .+..+.+.+ ++.. .....+ +.. +++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~~---~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LEG---AFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hCC---cEEEEECCCC
Confidence 4799999999999999999999999999988753 344454433 1222 112233 333 8999988776
Q ss_pred C
Q 011931 84 G 84 (474)
Q Consensus 84 ~ 84 (474)
.
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 5
No 283
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.65 E-value=0.007 Score=54.24 Aligned_cols=75 Identities=16% Similarity=0.415 Sum_probs=52.0
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++.-+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999977 599999999999999999988553 245556666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999988754
No 284
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.64 E-value=0.013 Score=57.90 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=73.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHH---HHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPES---FVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~~~~~~~~~~s~~e---~~~~l~~~dvIil~ 80 (474)
.++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999995 5777776643210000011 122221 12223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+|.+-. .+. .... ...++++.++.|.--.+. .| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCCc-cC-HHHHHHHHCCCeEEC
Confidence 987521 011 1100 123567889999876543 33 455555667766543
No 285
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.62 E-value=0.004 Score=62.89 Aligned_cols=92 Identities=14% Similarity=0.220 Sum_probs=58.3
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcE---EEEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~v 81 (474)
|+||+||| .|..|..+.+.|.++||++ ....++.+..+.+.-.+. .+...+ +..++ +. +|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~-----~i~v~d~~~~~~-~~---vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK-----ELKVEDLTTFDF-SG---VDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc-----eeEEeeCCHHHH-cC---CCEEEECC
Confidence 46899998 8999999999999988864 555444333222211110 122221 22222 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.. ...++...+ +..|..|||.|+..
T Consensus 72 g~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 986 444454443 34688999999753
No 286
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.62 E-value=0.015 Score=58.33 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=70.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--------CCcEE-EEeCChHH-------HHHHHHhhhhcCCCCccccC--CHHHHHh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--------GFPIS-VYNRTTSK-------VDETVERAKKEGDLPLFGFR--DPESFVN 69 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--------G~~V~-v~dr~~~~-------~~~l~~~~~~~~~~~~~~~~--s~~e~~~ 69 (474)
|+|+|||+|++|+.+++.|.++ +.+|. +.|++... ++++.+.... +........ +.+++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 34543 66766422 2222221110 000001112 4566543
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEE-ecCCCCCc
Q 011931 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYL-GMGVSGGE 138 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~v-~~pvsgg~ 138 (474)
..+|+||-|+|....-.....-+.+.|+.|..||..+...... -.++.+..+++|.++. .+.|.+|.
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2489999999854222223444556677898888766543221 2233444455666543 45555543
No 287
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.61 E-value=0.014 Score=53.31 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=62.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
||.|||+|.+|+.++.+|++.|. +++++|.+. +.+.+-.-..... +-.-+....+.++.+. +++=+.+.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~v---g~~Ka~~~~~~l~~ln-p~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQI---GEPKVEALKENLREIN-PFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhC---CChHHHHHHHHHHHHC-CCCEEEEEEee
Confidence 58999999999999999999998 599999885 2222111000000 0000111122222221 33334444322
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~v~~pvsg 136 (474)
-. ..- +...++.-++||+++.. +..-..+.+.+.++ ++.|+.+.+.+
T Consensus 77 ~~-~~~---~~~~l~~~DlVi~~~d~-~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 77 ID-ENN---LEGLFGDCDIVVEAFDN-AETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred cC-hhh---HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 11 111 22234456899998443 33333344555554 88887764443
No 288
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.60 E-value=0.015 Score=57.29 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=77.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..||.|.| .|.+|..+..+|.+.|++ .+|=.+|.. .+++. ++.++.+++|+.+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 45899999 588999999999999997 555444431 11111 367788999887621 269999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.+++++.... .-+..||-++.....+.+++.+..++.|+++++.-..|
T Consensus 77 -~v~~~l~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777766652 22334444443332333466677778899998755443
No 289
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.028 Score=59.66 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEe--cC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIML--VK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~--s~~e~~~~l~~~dvIil~--vp 82 (474)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++.+.. ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 46799999999999999999999999999998876554432321 132221 22333344 8988876 34
Q ss_pred CChh-HHHHHH---------HHHhc------c-cCCC-EEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 83 AGAP-VDETIK---------TLSAY------M-EKGD-CIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 83 ~~~~-v~~vl~---------~l~~~------l-~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+... +....+ ++.-. . .+.. |-|..|+++-.++.-+...|...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 3322 222110 11111 1 1223 446666666555555667777666543
No 290
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.033 Score=58.83 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
.++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+.. +|+||.+ +|+.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~~---~d~vv~sp~i~~~ 78 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWSG---FAALVLSPGVPLT 78 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHcC---CCEEEECCCCCcc
Confidence 35799999999999999999999999999998765444443322 2221111122233 8988863 2322
Q ss_pred h-----hHHHHHH---------HHHhcc-c----CCC-EEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 85 A-----PVDETIK---------TLSAYM-E----KGD-CIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~-----~v~~vl~---------~l~~~l-~----~g~-iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
. .+....+ ++.... . +.. |-|..|++.-.++.-+...|+..|..+.
T Consensus 79 ~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 79 HPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 1 2332221 111111 1 223 4466666665555555667777676543
No 291
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.0062 Score=59.89 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=55.8
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|. .|.+++..|.+.|..|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 4799999997 999999999999999999997321 23333344 9999999975432
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|+|.+...
T Consensus 216 v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC------HHHcCCCCEEEEEEEee
Confidence 21 13478999999988653
No 292
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.56 E-value=0.0035 Score=59.15 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=51.5
Q ss_pred cCcEEEEcccHhHHHHHHHH--HHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. ..+|.|++|+|.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~ 156 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPA 156 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCc
Confidence 35799999999999999863 35688777 67988776532211 0 012223455666543 248999999998
Q ss_pred ChhHHHHHHHH
Q 011931 84 GAPVDETIKTL 94 (474)
Q Consensus 84 ~~~v~~vl~~l 94 (474)
. ...++.+.+
T Consensus 157 ~-~~~~i~~~l 166 (213)
T PRK05472 157 E-AAQEVADRL 166 (213)
T ss_pred h-hHHHHHHHH
Confidence 6 344444433
No 293
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.55 E-value=0.017 Score=58.04 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=59.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
.||+|||+ |.+|.++|..|+..|. ++.++|+++ ++++.......+.. ..+.....+..+.+++ |
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---a 80 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD---V 80 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC---C
Confidence 58999998 9999999999998885 799999964 32332221111100 0012222333334444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++.-.+ .. ++++...+..+-++..+++..||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 9999987442 11 33344555555544777777775
No 294
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.037 Score=59.10 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=70.3
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|.+.....+|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.+.+.+.. ..+.......+.++. +|+||
T Consensus 1 ~~~~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv 74 (498)
T PRK02006 1 MFGDLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVA 74 (498)
T ss_pred CccccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEE
Confidence 33333445799999999999999999999999999997542 23334333210 011111122344444 89998
Q ss_pred Ee--cCCC-----hhHHHH-------------HHHHHhcc-----cCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 79 ML--VKAG-----APVDET-------------IKTLSAYM-----EKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 79 l~--vp~~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
.. +|+. ..+... +..+...+ .+..|-|-.|++.-.++.-+...|...|...
T Consensus 75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 86 4442 122111 11122111 1234556777777666666677777776543
No 295
>PRK05442 malate dehydrogenase; Provisional
Probab=96.52 E-value=0.017 Score=57.98 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~ 73 (474)
..||+|||+ |.+|.++|..|+..|. ++.++|++++ +++...-...+.. ..+...+.+..+.++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d--- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD--- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC---
Confidence 458999998 9999999999987664 7999999543 2222111110000 0012233333344444
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||++--.+ .. ++++...+..+..+..++|..||-
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99999876432 11 233334555555467777777763
No 296
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.51 E-value=0.012 Score=58.93 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=45.6
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCC--CcEEEEeCChHHHH--HHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEE
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~~~s~---~e~~~~l~~~dvI 77 (474)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++ .+.++. +|+|
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~g---aDvV 80 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRG---ADLV 80 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCC---CCEE
Confidence 5679999999 999999999999655 58999999432211 22111110 012223232 344444 9999
Q ss_pred EEecCC
Q 011931 78 IMLVKA 83 (474)
Q Consensus 78 il~vp~ 83 (474)
|++.-.
T Consensus 81 VitaG~ 86 (321)
T PTZ00325 81 LICAGV 86 (321)
T ss_pred EECCCC
Confidence 998755
No 297
>PLN00106 malate dehydrogenase
Probab=96.50 E-value=0.012 Score=59.05 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCcCcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCCh
Q 011931 5 KQLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT 40 (474)
Q Consensus 5 ~~~~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~ 40 (474)
....||+|||+ |.+|..+|..|+..+. ++.++|+++
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 34568999999 9999999999997765 899999987
No 298
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.49 E-value=0.0092 Score=59.56 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=58.5
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHH--HHHHhhhhcCCCCccccC---CHHHHHhhcCCCcEEEEe
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGDLPLFGFR---DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~~~---s~~e~~~~l~~~dvIil~ 80 (474)
||+|||+ |.+|.++|..|+..++ ++.++|+++...+ .+.. ... ..++..+. ++.+..+. +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998876 7999999872111 1111 100 00223211 12344444 9999998
Q ss_pred cCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. . ++++...+..+ .+..+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 75431 1 22333444444 5778888888854
No 299
>PRK05086 malate dehydrogenase; Provisional
Probab=96.49 E-value=0.021 Score=57.12 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHH---CCCcEEEEeCChHHH---HHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIi 78 (474)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+.... . ...+.. .+++.+.++. +|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~--~~~i~~~~~~d~~~~l~~---~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-T--AVKIKGFSGEDPTPALEG---ADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-C--CceEEEeCCCCHHHHcCC---CCEEE
Confidence 68999999 9999999988854 356899999985431 1111100 0 001222 2343444444 99999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 79 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9986421 122333444443 4667888887754
No 300
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.48 E-value=0.042 Score=54.45 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=85.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++++.+|.++|.+..+.+++++|++.+.++ .++|.+++.++.+.+. .+|+.++.-...+.+++ . +
T Consensus 161 ~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~-~-----~ 227 (292)
T PRK15059 161 GNGDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGGF-ASSRILEVHGERMIKRT-F-----N 227 (292)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcCc-ccCHHHHhhchhhhcCC-C-----C
Confidence 34788999999999999999999999988664 3499999999998773 67887775544332221 1 1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcC----CCchhHHHHHHhh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRR----ERLPANLVQAQRD 445 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~----~~~~~~~i~a~rd 445 (474)
+.|.- .-...+++-++..|-+.|+|+|....+.++|+.... +.-...+++..++
T Consensus 228 ~~f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 228 PGFKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred CCCch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 22322 233566789999999999999999888887764332 2223555555554
No 301
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.47 E-value=0.025 Score=58.99 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=63.5
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~ 73 (474)
--||+|||+ |.+|.++|..|+.. |. ++.++|++.++++...-...+.. ..++....+..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd--- 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD--- 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---
Confidence 358999999 99999999999987 65 78899999988765443221100 0023322333333444
Q ss_pred CcEEEEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||++...+. . ++++...|.+...+..+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 999999874421 1 223334454434567788888863
No 302
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.45 E-value=0.011 Score=59.47 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++...-...+.. ..++....+..+.++. |
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---a 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD---A 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC---C
Confidence 48999999 9999999999998876 79999995432 322211111000 0012222333333344 9
Q ss_pred cEEEEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++--.+. . ++++...+..+-.+..++|..||
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99999874421 1 23333445554434667777775
No 303
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.41 E-value=0.017 Score=50.63 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=51.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|+| -...|.+++..|.+.|..|++++++. .++++.+++ +|+|+.+++....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 3567776 55566777777777777777666431 156666777 9999999987632
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ .+.+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24588999999988765
No 304
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.011 Score=57.86 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=57.8
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||-| .+|.++|..|.++|..|++++... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 479999999 999999999999999999986321 134455666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23568999999998754
No 305
>PRK08328 hypothetical protein; Provisional
Probab=96.37 E-value=0.027 Score=53.77 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCc-cccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPL-FGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|.|||+|..|+.++.+|+..|. +++++|.+.-....+..+.-. ....+. ......++.+..+ .+++.+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEec
Confidence 3579999999999999999999997 788999875444433322100 000000 0000111112221 26777766543
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.- .++-+.+ .++.-++|||+.-.. ..-..+.+.+.+.++.++.+.+.|
T Consensus 106 ~~-~~~~~~~---~l~~~D~Vid~~d~~-~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 106 RL-SEENIDE---VLKGVDVIVDCLDNF-ETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred cC-CHHHHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEeecc
Confidence 21 1112222 345668999987663 333344455667888888876654
No 306
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.059 Score=56.63 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=65.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV-- 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v-- 81 (474)
++|.|+|.|.+|.++|+.|++.|++|+++|++.... +++.+.+. .+.......+.... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 479999999999999999999999999999875322 23332221 11111233333221 278887754
Q ss_pred CCCh-hHHHHH---------HHHHhcc-cCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 KAGA-PVDETI---------KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|... .++... .++...+ ....|-|..|++.-.++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 3322 222222 1222222 2234556667776555555666777666543
No 307
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.35 E-value=0.032 Score=58.12 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=75.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEE-e----------CChHHHHHHHHhhh-hcCCC----CccccCCHHHHHhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAK-KEGDL----PLFGFRDPESFVNS 70 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~~-~~~~~----~~~~~~s~~e~~~~ 70 (474)
-++|+|.|.|++|+.+|+.|.+.|.+|++. | .+.+.+.+..+... ....+ +.. ..+.+++...
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc
Confidence 358999999999999999999999999866 8 66665555443210 00000 001 1123333321
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+||++|-|.....-..+....+.+ ..=++|+..+|... +.+..+.|.++|+.++.
T Consensus 311 --d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 --PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred --CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998776444444444432 13468888888763 55677788999998875
No 308
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.35 E-value=0.0048 Score=53.67 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=68.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.||.|+|+|.+|+.++.+|+..|. +++++|.+.=....+..+.- .....+..-+...++.+.++. +++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cceeeeeeeccc
Confidence 589999999999999999999998 79999977422222111100 000000011112233333221 333344444321
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+..+.++. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 122333333 456899998766 3445566677788899999887654
No 309
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.33 E-value=0.028 Score=62.31 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=69.0
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccc--------cCCC-c
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGA--------RHGP-S 146 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a--------~~G~-~ 146 (474)
||+|+|.. .+.+++.++.+.++++.+|.|.++++........+.+......||+. |+.|.+..- .+|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999985 78899999999999999999999998655555444443323568885 888876422 2455 3
Q ss_pred ccc-C--CCHHHHHHHHHHHHHHhccC
Q 011931 147 LMP-G--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 147 i~~-g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
+++ . .++++++.++++++.+|+++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~ 106 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV 106 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 333 2 36788999999999999873
No 310
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.33 E-value=0.019 Score=56.28 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=71.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... ..++ . ...+|+||-|+|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876431 111 1111 1 1238999999986521
Q ss_pred --HH-H--HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 87 --VD-E--TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 87 --v~-~--vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.+ + .+. ...+.++.+++|..-.+..+ .+.+..+++|...+
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i 236 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPAET--PLIRYARARGKTVI 236 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEe
Confidence 00 0 011 12367788999987665433 34455566676554
No 311
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.33 E-value=0.01 Score=54.48 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=61.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc--CC----HHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF--RD----PESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~--~s----~~e~~~~l~~~dvIil~ 80 (474)
++|.||| -..+|.+||..|.++|..|+++|.+.-.. +...+.. +-..+ .+ +.+.+++ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 5799999 56789999999999999999998664322 1110000 00011 12 5566666 9999999
Q ss_pred cCCChh-HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAP-VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+.. +. .+.+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 998753 22 24578999999999764
No 312
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.32 E-value=0.012 Score=58.75 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=48.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||.|+| .|.+|+.++..|.++||+|++.+|++++...+...+. .+.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 6999999999999999999999999876544332211 0111 1234444444555899988764
No 313
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.32 E-value=0.0077 Score=60.75 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=55.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+|++|+|+| .|..|..+.+.|.+++|++. .. .+.+...+........ ..+... +..++ +. +|++|+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~ 74 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcC
Confidence 347999999 59999999999998877543 33 2222221111110000 011111 22333 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|++ ....+...+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 75 GAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 975 4444444433 4688999999865
No 314
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.32 E-value=0.013 Score=48.85 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHh
Q 011931 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (474)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 96 (474)
.-+..|+..|.+.|.+|.+||+.-............ ++..+++++++.+. +|.||++++.+.--+--.+.+..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~f~~l~~~~~~~ 89 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDEFRELDWEEIAK 89 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GGGGCCGHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHHHhccCHHHHHH
Confidence 346778999999999999999886544333211001 36677889998888 99999999987432223466777
Q ss_pred cccCCCEEEecCCCC
Q 011931 97 YMEKGDCIIDGGNEW 111 (474)
Q Consensus 97 ~l~~g~iiId~st~~ 111 (474)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 777889999987653
No 315
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.29 E-value=0.018 Score=53.60 Aligned_cols=123 Identities=14% Similarity=0.285 Sum_probs=69.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh------hhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA------KKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~------~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+. ... +..-+....+.++.+. +++-+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka~~~~~~L~~lN-p~v~i~ 94 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRAAASYEFLQELN-PNVKLS 94 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHHHHHHHHHHHHC-CCCEEE
Confidence 4689999999999999999999997 5899997742222221110 000 0001111222232222 566565
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+...... ...+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 95 ~~~~~~~--~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 95 IVEEDSL--SNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EEecccc--cchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5543211 0011112234456789988544 4444556677778888888876544
No 316
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.27 E-value=0.028 Score=54.03 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCCCCcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE--E
Q 011931 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV--I 77 (474)
Q Consensus 1 m~~~~~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv--I 77 (474)
|+...+.++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+.... . . +++ +
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~--------~---~~~~~~ 61 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------A--------G---GKAIGV 61 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------c--------C---ceEEEE
Confidence 455444556888875 9999999999999999999999998877666543211 0 0 222 2
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..-+.+...++.+++++.....+-++||++...
T Consensus 62 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 62 AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 222333345555666555544555777777654
No 317
>PLN02477 glutamate dehydrogenase
Probab=96.24 E-value=0.035 Score=57.39 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=72.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~~d 75 (474)
++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.......+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55554433322100000 0011 133343322 489
Q ss_pred EEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 76 VIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 76 vIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+++-|--.. ++ .+..+.+ +=.+|+..+|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~-----~I~~~na~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGG-----VINKENAADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccc-----cCCHhHHHHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 888775433 23 2233334 4578888888864 556778889999988853
No 318
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.086 Score=49.79 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 46888875 8999999999999999999999999887766543
No 319
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.016 Score=56.69 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=57.7
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-+. +|.++|..|.+.|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------------------TDDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------------------CCCHHHHHhh---CCEEEEccCCccc
Confidence 4799999888 9999999999999999999842 2245666666 9999998876643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 2357899999999875
No 320
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.23 E-value=0.03 Score=55.57 Aligned_cols=98 Identities=13% Similarity=0.241 Sum_probs=57.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccC--CHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFR--DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~--s~~e~~~~l~~~dvIil~ 80 (474)
+||+|||+|.+|+++|..|...+. ++.++|+++++.+-......+.. ..+..... +.+++ +.+|+|+++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~----~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL----KGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhh----cCCCEEEEe
Confidence 589999999999999999987764 79999999655433221111100 00122222 23333 339999998
Q ss_pred cCC----Chh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKA----GAP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~----~~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.-. +.. ++++..++.... ++.+++-.||-
T Consensus 77 AG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNP 120 (313)
T COG0039 77 AGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNP 120 (313)
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCc
Confidence 822 211 222334444443 46677777764
No 321
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.19 E-value=0.043 Score=56.29 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=60.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-c----EE--EE--eCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-...+.. ..++....+..+..+. +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 58999999 9999999999998775 2 33 44 888887665443221100 0023323333333444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|+||++...+ .. ++++...+.++..+..+||..||-
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 9999976432 11 233334555555567778888763
No 322
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.19 E-value=0.06 Score=53.28 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=76.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++++.+|.++|.+..+.+..+.|++.+.++. ++|.+++.++|+.+ ..+|.+++.....+.+.+ ..
T Consensus 164 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~d-~~----- 230 (296)
T PRK11559 164 DIGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDRN-FK----- 230 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcCC-CC-----
Confidence 346788999999999999999999999997753 49999999999876 456776665433222221 11
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
+.|.- .-...+++-++..|-+.|+|.|.+..+...|+..
T Consensus 231 ~~f~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 231 PGFRI--DLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred CCcch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 12221 1224456888999999999999999999866643
No 323
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.14 E-value=0.03 Score=56.62 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=69.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCC--CccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDL--PLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-~~~--~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.-.. ... +..-+....+.++.+. +++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEEe
Confidence 4689999999999999999999998 8999998753333322110000 000 0000111222223221 455555554
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
..-. ..-+. +.+..-++|||++... ..-..+.+.+...++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDNF-ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeeee
Confidence 3211 11222 2345668999997754 344445555667788888765544
No 324
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.063 Score=50.58 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..
T Consensus 1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~ 61 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGI 61 (239)
T ss_pred CCCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEe
Confidence 33333445788887 69999999999999999999999998765544332110 01 334444
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-+.+...++.+++++.....+-+.|++....
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 62 DLVDPQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred ecCCHHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 4555556666666665544445677776543
No 325
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.13 E-value=0.056 Score=57.16 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=67.7
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec-
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v- 81 (474)
+.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCC
Confidence 3457999999999999 89999999999999997653 233333322 2222 112233333 89888754
Q ss_pred -CCC-hhHHHHH---------HHHHhcc-cC-CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 82 -KAG-APVDETI---------KTLSAYM-EK-GDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 82 -p~~-~~v~~vl---------~~l~~~l-~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
|.. ..+.... -+++..+ .+ ..|-|..|++.-.++.-+...|+..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 322 2222221 1232222 22 345577777776666666777777774
No 326
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.13 E-value=0.019 Score=54.49 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=51.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|.|+|+ |.+|+.++..|.+.+++|.+.-|++. ..+.+...+... +. -..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999999999999999864 355555443210 11 133566666677779999999984
No 327
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.10 E-value=0.017 Score=58.04 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=57.6
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhc--C-CCCccccCCHHHHHhhcCCCc
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKE--G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++.+.......+. . ........+..+.++. ||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999997663 599999987 5433221111000 0 0011222344455555 99
Q ss_pred EEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 76 VIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 76 vIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
+||++--.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999876432 11 23333455554346666666665
No 328
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.02 Score=55.91 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+ .+|.++|..|.++|..|+++... +.++.+.+++ +|+||.++.-+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------------------T~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF---------------------TKDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CcCHHHHHhh---CCEEEEecCcccc
Confidence 479999988 99999999999999999988632 1245566666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 24578999999998764
No 329
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.077 Score=53.63 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=70.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHH--------CCC--cEE-EEeCChHH-------HHHHHHhhhhcCCC-Ccc-----ccC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE--------KGF--PIS-VYNRTTSK-------VDETVERAKKEGDL-PLF-----GFR 62 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~--------~G~--~V~-v~dr~~~~-------~~~l~~~~~~~~~~-~~~-----~~~ 62 (474)
+++|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998876 464 433 45654221 12222211110000 010 011
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe-cCCCCCcc
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG-MGVSGGEE 139 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v~-~pvsgg~~ 139 (474)
++.+++... .+|+||-+++.. ....++. ..+..|..||..++.... .-.++.+..++++..+.- +.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 566776432 389999998653 4444443 445678888877664211 223444444556776654 45665543
No 330
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.01 E-value=0.49 Score=48.16 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=96.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCC---------------Cc---cccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDL---------------PL---FGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~---------------~~---~~~~s~~e~ 67 (474)
|.+|-|+|+|..+-.+|..|.+.+. .|-+.+|...+.+++.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5679999999999999999988775 6899999888877776554331100 00 123445555
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEe-------cCCCCC
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELG--LLYLG-------MGVSGG 137 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~v~-------~pvsgg 137 (474)
... =|.+|+|||.+ +-.+|+++|.+. |..=+.||-.|... +.-.-+...+.+.+ +.+|. .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 554 79999999997 677888776542 44434555555544 33333444444433 33333 123333
Q ss_pred ccc---ccCCC--ccccCC---CHHHHHHHHHHHHHHhccC
Q 011931 138 EEG---ARHGP--SLMPGG---SFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 138 ~~~---a~~G~--~i~~gg---~~~~~~~v~~ll~~lg~~~ 170 (474)
... ...|. .+.+|. +....+++..+|+.++-+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 211 11222 355553 4556788889998888653
No 331
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.98 E-value=0.02 Score=57.95 Aligned_cols=92 Identities=12% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCcCcEEEEc-ccHhHHHHHHHHHHCCCc---EEEE--eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEE
Q 011931 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVI 77 (474)
Q Consensus 5 ~~~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvI 77 (474)
...+||+||| .|..|..+.+.|.+.+|+ +... .|+..+.-.. .+. .+.... +.++ ++. +|+|
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~-----~~~v~~~~~~~-~~~---~D~v 73 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGR-----DYTVEELTEDS-FDG---VDIA 73 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCc-----eeEEEeCCHHH-HcC---CCEE
Confidence 3457899998 899999999999998884 3222 3333322111 111 122221 2233 344 9999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|+|+|.+ ....+...+ ...|..|||.|+..
T Consensus 74 f~a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 74 LFSAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred EECCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 9999987 444444433 24689999999754
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.062 Score=57.06 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=65.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|.|||.|..|..+|..|.+.|++|+++|+++. ....+.+..... ++... .... ... .+|+||++.--
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~~---~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LPE---DTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-ccC---CCCEEEECCCc
Confidence 35799999999999999999999999999996643 222222211111 12222 1222 222 38999987632
Q ss_pred ---ChhHHHHH---------HHHH-hcccC----CCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 84 ---GAPVDETI---------KTLS-AYMEK----GDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ---~~~v~~vl---------~~l~-~~l~~----g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+...- -+++ ..+.+ ..|-|-.|++.-.++.-+...|...|...
T Consensus 89 ~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 89 RPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 22111111 1222 22222 13556677777555555667777666543
No 333
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.027 Score=55.16 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------------TQDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6778999999999999999988632 2356666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999998764
No 334
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.077 Score=50.94 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=64.5
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCC-CcEE-EEeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKG-FPIS-VYNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G-~~V~-v~dr~~~~~-----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+||||+|+|+ |.||+.+.+.+.+.. +++. .++|.+... .++...+ ..++...+++...... +|++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEE
Confidence 4689999997 999999999998775 5544 778876532 1221111 1124445554554444 9998
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~ 125 (474)
|=-+.+. .....++-. +..+..+|-.||+......+..+.+.++
T Consensus 74 IDFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 74 IDFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 8766553 444444433 3345556666776655444444444433
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.088 Score=55.55 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||.|||+|..|.+.|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997653
No 336
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.91 E-value=0.051 Score=54.03 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=58.5
Q ss_pred EEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011931 12 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~- 85 (474)
|||+|.+|.++|..|+..+. ++.++|++.++++.......+.. ..+.....+..+..+. ||+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998876 79999998876554443222110 0012222232333344 999999775421
Q ss_pred ---h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 ---P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ---~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
. ++++.+.+..+ .+..+||..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 23333455554 467778888763
No 337
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.91 E-value=0.024 Score=56.86 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=32.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (474)
...+|-|||+|.||.-.+++|.++|. +|++.||+.+
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 34689999999999999999999996 6999999975
No 338
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.90 E-value=0.059 Score=57.94 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=71.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.++-|+|.|.+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888764321 1111122222111 1268888788765210
Q ss_pred --HH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 --DE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 --~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+. -+. ...+++..+++|..-.+.. | .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEe
Confidence 10 011 1236678899998776543 2 34444556665443
No 339
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.90 E-value=0.037 Score=54.21 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.5
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKV 43 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (474)
+|.|+|+ |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4788985 9999999999999999999999998754
No 340
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.06 Score=51.27 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|+.....++|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~ 63 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAA 63 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEc
Confidence 34444446788888 59999999999999999999999998877665442210 0001 222222
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+...++.+++++.....+-++||++...
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333345555555555444445677776554
No 341
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.073 Score=56.04 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=69.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEec--C
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~~~~--s~~e~~~~l~~~dvIil~v--p 82 (474)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++.... ...+.+.. +|+||.+- |
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~~~~---~d~vV~sp~i~ 79 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDCELLVQ---ASEIIISPGLA 79 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCChHHhcC---CCEEEECCCCC
Confidence 599999999999999999999999999997643 2233433100 122211 12333444 89887743 3
Q ss_pred CC-hhHHHHH---------HHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 83 AG-APVDETI---------KTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 83 ~~-~~v~~vl---------~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
+. ..+.... -+++..+.+. .|-|-.|++.-.++.-+...|...|..+.-.+..|.
T Consensus 80 ~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 80 LDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 22 1222211 1233222233 345666777755666667777777765554444443
No 342
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.03 Score=55.14 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999988532 2356666677 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 24578999999998764
No 343
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.87 E-value=0.047 Score=54.96 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCC-------CcEEEEeCChH--HHHHHHHhhhhc---CCCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKKE---GDLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~~~~~---~~~~~~~~~s~~e~~~~l~~~ 74 (474)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +++...-...+. ...++....++.+.++. |
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~---a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD---V 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---C
Confidence 47999998 999999999998754 58999999653 222111000000 00012223454455555 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++.-.+ .. ++++...+..+..++.++|-.||
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999876432 11 12333455555456777777776
No 344
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.86 E-value=0.033 Score=54.51 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.++|..|.++|..|+++... +.++.+.+++ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 5678999999999999999988632 2356666777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 24578999999999765
No 345
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.84 E-value=0.15 Score=49.34 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=69.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE-EEe----------CChHHHHHHHHhhhhcCC----C-----CccccCCHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGD----L-----PLFGFRDPESF 67 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~~~----~-----~~~~~~s~~e~ 67 (474)
.+|.|-|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999988 656 233444333221110000 0 0111 134444
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... .||+++-|--...--.+....+.. .+=.+|+...|.+. +.+..+.|.++|+.++.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 332 489888775443222222223221 13468888888763 336778889999998853
No 346
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.84 E-value=0.031 Score=54.57 Aligned_cols=74 Identities=12% Similarity=0.328 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.+++..|.++|..|++++.. +.++.+.+++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6678999999999999999999742 2356666777 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998654
No 347
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.034 Score=54.36 Aligned_cols=74 Identities=15% Similarity=0.318 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|++++.. +.++++..++ +|+||.++.-+.-
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------------------TQNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEeCCCcCc
Confidence 4799999 6778999999999999999998733 2345666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 24578999999999864
No 348
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.80 E-value=0.056 Score=50.28 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=69.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh----hhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
..+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+. ... +-.-+....+.++.+ .+++-+.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~a~~~~L~~l-Np~v~i~~~ 96 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAEASLERLRAL-NPRVKVSVD 96 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHHHHHHHHHHH-CCCCEEEEE
Confidence 4689999999999999999999998 6899997742222221100 000 000111222223332 256666555
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+.. +.+...+ .+..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 97 ~~~--~~~~~~~---~~~~~dvVi~~~~~-~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 97 TDD--ISEKPEE---FFSQFDVVVATELS-RAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ecC--ccccHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 432 1111122 23345788887543 4444556677778888888877654
No 349
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.79 E-value=0.045 Score=51.58 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.......+-.-+....+.++.+. +++-+.+.+..-
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~~~~~i 106 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEAHNEKI 106 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEEEeeec
Confidence 3579999999999999999999998 59999988321111111100000000000111122222211 344444443221
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~v~~p 133 (474)
....+. ..+..-++||+++-.. .....+.+.+... ++.++.+.
T Consensus 107 -~~~~~~---~~~~~~DvVI~a~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 -DEDNIE---ELFKDCDIVVEAFDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred -CHHHHH---HHHcCCCEEEECCCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 111122 2244568999985443 3334455566666 77777653
No 350
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.79 E-value=0.033 Score=54.43 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999988632 2245666666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998754
No 351
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.78 E-value=0.11 Score=53.53 Aligned_cols=113 Identities=10% Similarity=0.110 Sum_probs=67.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
..|-|+|.|.+|..+++.|.+.|++|.+.|.++ .++..+.+.. -+....+.++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2332222211 1222233344443 2557999999888764
Q ss_pred hHHHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.-..++.. ...+.| ..+|+-..+. +..+.++..|...+=.|
T Consensus 315 ~Nl~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 33323222 333444 4566554442 23445566677665444
No 352
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.76 E-value=0.091 Score=54.98 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=69.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH-HHH---HHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~v- 81 (474)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 12110 0 12222 23 333344 89888754
Q ss_pred -CCC-hhHHHHH---------HHHH-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 82 -KAG-APVDETI---------KTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 82 -p~~-~~v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
|+. ..+.... .+++ ..+....|-|..|++.-.++.-+...|+..|..+.-.+..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 322 1222211 1222 2232234556677777666666677777777665444434433
No 353
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.76 E-value=0.097 Score=55.09 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=65.4
Q ss_pred cEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec--CC
Q 011931 9 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV--KA 83 (474)
Q Consensus 9 ~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~v--p~ 83 (474)
+|-|||.|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +.... ...+.++. +|+||.+- |+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~~---~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLDD---ADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCCC---CCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333222 33222 12233333 89888753 33
Q ss_pred C-hhHHHHH---------HHHH-hccc-CCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 84 G-APVDETI---------KTLS-AYME-KGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 84 ~-~~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
. ..+.... -+++ ..+. ...|-|..|+++-.++.-+...|+..|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 2 2222221 1222 2222 2345577777776666666777777775
No 354
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.73 E-value=0.026 Score=54.34 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=36.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
++++|.|+| .|.+|+.++..|+++||+|++..|++++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 467899999 59999999999999999999999998876544
No 355
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.078 Score=50.37 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=54.9
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|+++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.... .-.. ..++..=+.+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~ 68 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--------------TGVK---AAAYSIDLSNPE 68 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------CCCc---EEEEEccCCCHH
Confidence 45688887 59999999999999999999999998876655432210 0001 222333333344
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+..+++.+.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 69 AIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5555566555544444677776543
No 356
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.076 Score=53.57 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCCCCcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|++....+.|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+.... .-.. ..++..
T Consensus 1 ~~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~--------------~g~~---~~~~~~ 63 (330)
T PRK06139 1 MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA--------------LGAE---VLVVPT 63 (330)
T ss_pred CCcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEe
Confidence 444444456777885 8999999999999999999999999887766543210 0001 222333
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+.++++.+++.+.....+=+++|++...
T Consensus 64 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 64 DVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3445556777776665554444778877653
No 357
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.70 E-value=0.1 Score=47.77 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred cEEEEcccHhHHHHH-HHHHHC-----CCcEEEEeCChHHHHHHH---HhhhhcC--CCCccccCCHHHHHhhcCCCcEE
Q 011931 9 RIGLAGLAVMGQNLA-LNIAEK-----GFPISVYNRTTSKVDETV---ERAKKEG--DLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA-~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
||+|||.|..-.+.- ..+... +-++.++|+++++++... +...+.. ..++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 799999999877633 223222 237899999999877432 2211110 2256778899999988 9999
Q ss_pred EEecCCC
Q 011931 78 IMLVKAG 84 (474)
Q Consensus 78 il~vp~~ 84 (474)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998655
No 358
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.70 E-value=0.14 Score=48.78 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.- .....+-.-+....+.++.+. +++-+.+.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEEEecce
Confidence 4589999999999999999999997 78899877432222221100 000000001112222222221 44444455432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .+-+ .+.+..-++||++... +..-..+.+.+.++++.++.+.+.|
T Consensus 100 i~-~~~~---~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AENA---EELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HHHH---HHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1112 2233456888888664 3444445566677888898877655
No 359
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.038 Score=54.08 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=57.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|++++.. +.++.+..++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~---------------------T~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------------------TTDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHhhh---cCEEEEccCCcCc
Confidence 4799999 6678999999999999999998743 1245555666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 32 24578999999998754
No 360
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.69 E-value=0.042 Score=54.77 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=54.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|+||+||| .|..|..+.+.|.++.+ ++.....+..+ .. .+.++..+. +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 467999999 89999999999988753 33322222111 01 122333344 8999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+ ...++..++. ..|..|||.|+-.
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4444444443 4689999999754
No 361
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.04 Score=53.87 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.||| -..+|.++|..|.++|..|+++.... .++++..++ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 56789999999999999999887431 245666666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 23578999999998754
No 362
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.66 E-value=0.13 Score=50.76 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=77.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+.++.+|.++|.+....+..++|++.+.++ +++|.+++.+..+.+ ..+|+.++...+.+... +. ++
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KP 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CC
Confidence 4677889999999999999999999999774 359999999999876 45777776653333222 11 12
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
.|.- .-....++.+...|-+.|+|.|.+.++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 2222 2234566888999999999999999999877643
No 363
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.04 Score=54.01 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.||| -..+|.++|..|.++|..|++++.. +.++.+.+++ +|+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------------------t~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------------------TKNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------------------chhHHHHHHh---CCEEEEecCCCCc
Confidence 4799999 7789999999999999999998632 1245666676 9999999987642
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 23578999999998754
No 364
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.14 Score=53.91 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=67.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~v- 81 (474)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+... ++... ....+.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~-----gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFD-----GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccC-----CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976542 333322100 12221 112233344 89998865
Q ss_pred -CCC-hhHHHHHH---------HHH-hccc---CCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 -KAG-APVDETIK---------TLS-AYME---KGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 -p~~-~~v~~vl~---------~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+. ..+....+ +++ ..+. ...|-|..|++.-.++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 222 22222211 122 2221 123556677777656666667777777653
No 365
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.62 E-value=0.047 Score=52.50 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=71.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|+|+|.+|+.+|.+|+..|. +++++|.+.-....+..+.-. ....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3579999999999999999999997 788999875433333221100 0000000111122223222 156666665532
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ..- +.+.+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 111 223345678999988664 444445566677888888766554
No 366
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.62 E-value=0.042 Score=54.13 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=57.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+||..|.++|..|++++.. +.++++.+++ +|+||.++.-+.-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 5678999999999999999999642 2356677777 9999999976532
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24578999999998764
No 367
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.61 E-value=0.042 Score=54.03 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=58.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+.-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~---------------------T~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA---------------------TRDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999998743 2246666677 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24578999999998754
No 368
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.58 E-value=0.15 Score=50.65 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=74.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHH-HHH-HHHhhCCCCCCCc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLD-RIK-KAYDRNADLANLL 387 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~-~~~-~~~~~~~~l~~ll 387 (474)
+.++++.+|.+.|.+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+. ... .++.++.
T Consensus 163 ~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------ 229 (296)
T PRK15461 163 GPGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------ 229 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC------
Confidence 457888999999999999999999999998853 399999999988663 2333332 222 1222211
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 388 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
++.| .++-...+++-+.+.|-+.|+|.|....+...|..
T Consensus 230 -~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 -SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred -CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1233 23344667799999999999999999999886654
No 369
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.049 Score=53.36 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=57.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+++.||| -..+|.+++..|.+ ++..|+++... +.++++..++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 4799999 67889999999998 68899988743 2356667777 99999999876
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.-+. ...+++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4322 24578999999998764
No 370
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.50 E-value=0.11 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=35.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++|-|.| .|.+|..++..|+++|++|.+.+|++++.+.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 47 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAA 47 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 35788998 6999999999999999999999999877655443
No 371
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.042 Score=53.65 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=56.9
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++-+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 479999988 9999999999999999999986532 34455566 9999999975422
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. . ..+++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 21 2 2368999999998753
No 372
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.50 E-value=0.049 Score=55.38 Aligned_cols=97 Identities=11% Similarity=0.251 Sum_probs=58.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHh-hhh------cCC-CCccc-cCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKK------EGD-LPLFG-FRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~------~~~-~~~~~-~~s~~e~~~~l~~~d 75 (474)
|+||+|+| .|.+|+.+.+.|.++.. ++..+.++++...+.... ... .+. ..+.. ..+++++ .. +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 57999998 89999999999987654 888775565433221110 000 000 00111 1234433 44 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+.|+|.+ ....+.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999986 3344443332 4688899998754
No 373
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.44 E-value=0.12 Score=49.36 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
|+|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5688898 699999999999999999999999988766554
No 374
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.43 E-value=0.087 Score=52.90 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=30.0
Q ss_pred EEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHH
Q 011931 10 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVE 48 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 48 (474)
|||+|+|.+|+.+++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56666 56777776555554
No 375
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.052 Score=53.25 Aligned_cols=74 Identities=11% Similarity=0.290 Sum_probs=57.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 4699999 5678999999999999999988732 2246666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 32 24578999999998653
No 376
>PRK08223 hypothetical protein; Validated
Probab=95.40 E-value=0.095 Score=51.46 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+...++.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3579999999999999999999997 78899877433332322110 000000011112233333322 33334444322
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ++-+.++ +..-++|||++.... ..-..+.+.+..+++.++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1112222 335689999886542 333344556677889888876554
No 377
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.38 E-value=0.43 Score=51.38 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=50.1
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCC---CCcc--c--cCCHHHHHhhcCCCc
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGD---LPLF--G--FRDPESFVNSIQKPR 75 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~~~---~~~~--~--~~s~~e~~~~l~~~d 75 (474)
.|.|.| .|.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++. . ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 477887 59999999999999999999999999887765442110 000 0011 1 123444444456699
Q ss_pred EEEEecCC
Q 011931 76 VIIMLVKA 83 (474)
Q Consensus 76 vIil~vp~ 83 (474)
+||.+...
T Consensus 162 iVVn~AG~ 169 (576)
T PLN03209 162 VVICCIGA 169 (576)
T ss_pred EEEEcccc
Confidence 99988743
No 378
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.38 E-value=0.13 Score=49.50 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+.-. ....+-.-+....+.+..+. +++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4589999999999999999999997 788998774332222211100 00000011112222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. +.- +...+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 111 i~-~~~---~~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDE---LAALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHH---HHHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 111 222344668999987643 333335556667788888765543
No 379
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.37 E-value=0.058 Score=52.72 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=57.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.+++..|++++.. +.++++..++ +|+||.++.-+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6678999999999999999998642 2345666676 9999999986543
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24578999999998764
No 380
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.36 E-value=0.046 Score=54.92 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (474)
||+|||+ |.+|..+|..|+..|. ++.++|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999997654 5999999654
No 381
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.35 E-value=0.053 Score=54.95 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCC-CcEEEE-eCChHHHHHHHHhhhh-----cCC--CCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKK-----EGD--LPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~~~--~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+||+|+| .|.||..+++.|.++. ++|... +++++..+.+.+.... ... ..+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 5899999 5999999999998876 577655 6544322222211100 000 00011111112223 39999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++|+|.+ ....+...+ ...|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 9999987 333343333 34688899998763
No 382
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.35 E-value=0.17 Score=52.05 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=67.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|..|+.++.+|+..|. +++++|++.-....+..+.- .....+..-+....+.+..+. +++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3579999999999999999999998 79999987422222211100 000000001111222222221 34444444332
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ...+.+ .+..-++|||++.... .-..+.+.+.+.++.++.+.+.|
T Consensus 214 ~~-~~~~~~---~~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VT-SDNVEA---LLQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CC-hHHHHH---HHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 11 112222 2345689999887642 22234556677889888876654
No 383
>PRK06153 hypothetical protein; Provisional
Probab=95.35 E-value=0.11 Score=52.98 Aligned_cols=119 Identities=9% Similarity=0.096 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh-h----hcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-K----KEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~-~----~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . ..|. ...-+...++.+..+. +++. +
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk-~~~KVevaa~rl~~in-~~I~--~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELRE-APKKVDYFKSRYSNMR-RGIV--P 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCC-cchHHHHHHHHHHHhC-CeEE--E
Confidence 3589999999999999999999997 7889987632111111110 0 0000 0001111222233221 3443 3
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
.+..- -.+.+ ..+..-++|++|.-... .-..+.+.+...++.|+++++.
T Consensus 252 ~~~~I-~~~n~----~~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 252 HPEYI-DEDNV----DELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred EeecC-CHHHH----HHhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 33211 11112 23445688888877542 2223455667788999987643
No 384
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.33 E-value=0.11 Score=49.58 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++....... -.. ..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--------------GGK---AIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 3688888 799999999999999999999999988776655432100 001 2233333444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+-++||+++.
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555555567777654
No 385
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.30 E-value=0.13 Score=48.60 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|+| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 4688887 5999999999999999999999999887766544
No 386
>PRK06182 short chain dehydrogenase; Validated
Probab=95.29 E-value=0.16 Score=49.35 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|++++++++... . ...+..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCCHHH
Confidence 4688888 59999999999999999999999998776544321 1 2333334444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666655544344666666543
No 387
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.29 E-value=0.21 Score=50.96 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=69.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.=....+..+.-. ....+-.-+....+.+..+. +++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEEEEEee
Confidence 3589999999999999999999997 788999875222222111000 00000001111222222221 56666665543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-..+. ..+.+..-++|||++-.. ..-..+...+.+.++.|+.+.+.|
T Consensus 107 i~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 21111 222345678999998654 222234455567788888876655
No 388
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.28 E-value=0.17 Score=52.63 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEE--------Ee---CChHHHHHHHHhhhhcC--------CC-CccccCCHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKKEG--------DL-PLFGFRDPESF 67 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~~--------~~-~~~~~~s~~e~ 67 (474)
.+|+|=|.|++|...|+.|.+.|.+|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5799999999999999999999999998 88 67766543432211100 00 01111 22333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
... +||+.+-|--...-..+..+.|.. ..-.+|+..+|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 221 388887765443222222233321 134688888888 4 445667788999998875
No 389
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.28 E-value=0.093 Score=52.40 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=73.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--------CCcE--E-EEeCChHHHHHHHHhhhhcCCCC-ccccCCH-----HHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--------GFPI--S-VYNRTTSKVDETVERAKKEGDLP-LFGFRDP-----ESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--------G~~V--~-v~dr~~~~~~~l~~~~~~~~~~~-~~~~~s~-----~e~~ 68 (474)
+.++|+|+|+|.+|+.+++.|.++ |.++ . +.||+......+. .. + ....++. .+++
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLD--LL-----NAEVWTTDGALSLGDEVL 74 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccc--cc-----chhhheecccccccHhhh
Confidence 456899999999999999999875 3333 3 5577665443110 00 0 0112222 3443
Q ss_pred hhcCCCcEEEEecCC-ChhHHHHHHHHHhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCe-EEecCCCCCcc
Q 011931 69 NSIQKPRVIIMLVKA-GAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLL-YLGMGVSGGEE 139 (474)
Q Consensus 69 ~~l~~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~-~v~~pvsgg~~ 139 (474)
.. ...|+|+-+++. -...+. ++.+...++.|..||......-.. -.++.+..++.|.. +..+.|.||-+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 32 346899998887 444555 667777888999887554432111 11344444555654 44677766643
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.14 Score=49.24 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=36.3
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+.++|-|+| .|.+|..++..|+++|++|++.+|+++..+++.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345788997 6999999999999999999999999876665543
No 391
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.27 E-value=0.031 Score=56.53 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=56.0
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||+||| .|..|..|.+.|.+++|++. .+.++.+.-+.+.-.+. .+...+ +..++ +. +|+||+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 99999999999999888643 34444332222221111 122211 22333 44 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ........+ +..|..|||.|+..
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 6 444444433 34688999998743
No 392
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.27 E-value=0.1 Score=52.77 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.7
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDET 46 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 46 (474)
||+|-|.|+ |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 568999996 99999999999986 79999999987654443
No 393
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.22 E-value=0.2 Score=49.20 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=81.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHH-HHHhhCCCCCCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIK-KAYDRNADLANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~-~~~~~~~~l~~ll~ 388 (474)
+.+.|+.+|+++|=+-...++.++|.+.+-+++ + +|.+.+.++-++|. -+|+.++.-. ..++++.
T Consensus 163 ~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~~-~~s~~~e~~~~~m~~~~~------- 228 (286)
T COG2084 163 PVGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGGA-AGSWILENYGPRMLEGDF------- 228 (286)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhccc-cCChHHHhhcchhhcCCC-------
Confidence 458899999999999999999999999997764 3 99999999998873 5788877632 2333321
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
+|-|.- +-...+++-+...|.+.|+|+|..+.+.+.|+..
T Consensus 229 ~p~F~v--~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~ 268 (286)
T COG2084 229 SPGFAV--DLMLKDLGLALDAAKELGAPLPLTALAAELYAKA 268 (286)
T ss_pred CcchhH--HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 233332 3456677889999999999999999999877643
No 394
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.21 E-value=0.065 Score=53.68 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------------------T~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------------------TKDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4699999 6678999999999999999988632 2245666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 32 24578999999998754
No 395
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.22 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=35.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+...
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 357889986 99999999999999999999999987665544
No 396
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.18 E-value=0.067 Score=53.85 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.+++..|+++... +.++.+..++ +|+||.++.-+.-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4699999 6778999999999999999998632 2356666777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 32 24578999999998654
No 397
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.18 E-value=0.15 Score=50.40 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=75.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCC-CCCc-
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADL-ANLL- 387 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l-~~ll- 387 (474)
+.++++.+|.++|.+.++.++.++|++.+.++ .++|...+.++.+.+. -+|+.++.... .+.. .+.+
T Consensus 158 ~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~ 226 (288)
T TIGR01692 158 DHGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPA 226 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----Cccccccccc
Confidence 35788999999999999999999999999775 3499999999998763 45665442211 0000 0000
Q ss_pred ---cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 388 ---VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 388 ---~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.++-|. +.-...+++.+...|-+.|+|+|....+...|..
T Consensus 227 ~~~~~~~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 269 (288)
T TIGR01692 227 SNGYQGGFG--TALMLKDLGLAQDAAKSAGAPTPLGALARQLYSL 269 (288)
T ss_pred cCCCCCCcc--hHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 012222 2234567789999999999999999988886654
No 398
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.16 Score=51.30 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=57.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+..
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~--------------~g~~---~~~v~~Dv~d~~ 70 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA--------------AGGE---ALAVVADVADAE 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------cCCc---EEEEEecCCCHH
Confidence 34577777 59999999999999999999999998877665543210 0000 122223334445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+...+.+=+++|++...
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCc
Confidence 6666766666655555778876654
No 399
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.15 E-value=0.35 Score=45.41 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||.|..|..=++.|++.|-+|+++..+. +.+..+.+.+... -+...-..+++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 479999999999999999999999999998776 5555555443210 011112233333 389999999886 4
Q ss_pred HHHHH
Q 011931 87 VDETI 91 (474)
Q Consensus 87 v~~vl 91 (474)
+..-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 55444
No 400
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.15 E-value=0.031 Score=56.32 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEe
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~ 80 (474)
..++|+||| .|..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. .. +|++|+|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~~~~---~Dvvf~a 73 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFDWSQ---AQLAFFV 73 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhhccC---CCEEEEC
Confidence 346899999 59999999999998644 45544332221111110010 12222 334332 34 8999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|.+ ....+...+. ..|..|||.|+..
T Consensus 74 ~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 74 AGRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CCHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 9986 4444444432 4689999999754
No 401
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.077 Score=52.01 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++.||| -..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 567899999999988 6788887632 2356666676 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764322 24578999999998754
No 402
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.08 E-value=0.18 Score=53.32 Aligned_cols=117 Identities=13% Similarity=0.199 Sum_probs=75.2
Q ss_pred cCcEEEEcc----------cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh--------h------cCC-CCcccc
Q 011931 7 LTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK--------K------EGD-LPLFGF 61 (474)
Q Consensus 7 ~~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~--------~------~~~-~~~~~~ 61 (474)
-.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.-...+. . ... .++..+
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeee
Confidence 358999998 457788999999999999999986432211000000 0 000 013455
Q ss_pred CCHHHHHhhcCCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 62 RDPESFVNSIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 62 ~s~~e~~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.++.++++. +|+||+++..+ ..+.. +..+.+.+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 404 ~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 404 WDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 666777776 99999999986 44432 34555556555689999888742 22335588887654
No 403
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=95.07 E-value=0.095 Score=50.17 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=80.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..-..++|.|...-.......+.- .+|.+|+|+++..+.+++...+.- ...+..+.+.++++.. +|+|+.|
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~a 214 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGA 214 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEec
Confidence 345789999999988776665542 489999999999888887433210 0024567788888887 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
++.... .+ ....++||+.|=-.++.. ....+....+-..+..|||.
T Consensus 215 tlsteP---il--fgewlkpgthIdlVGsf~-p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 215 TLSTEP---IL--FGEWLKPGTHIDLVGSFK-PVMHECDDELIQSACVFVDS 260 (333)
T ss_pred cccCCc---ee--eeeeecCCceEeeeccCC-chHHHHhHHHhhhheEEEec
Confidence 987543 22 124577886554344444 46666666666677888886
No 404
>PRK08309 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.27 Score=44.87 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
|++.|+|...||..++..|++.|++|.+.+|++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 5688998767888899999999999999999988766554
No 405
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.04 E-value=0.054 Score=54.72 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH-CCCc---EEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE-KGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~-~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v 81 (474)
+|||||| .|..|..|.+.|.+ ..++ +..+......-+.+.-.+. .+... .+++++ .. .|++|+|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-----~l~v~~~~~~~~-~~---~Divf~a~ 76 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-----EIIIQEAKINSF-EG---VDIAFFSA 76 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-----ceEEEeCCHHHh-cC---CCEEEECC
Confidence 5899999 59999999999995 5667 5444432221111100010 12221 234444 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+ ....+...+ ...|..|||.|+..
T Consensus 77 ~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 77 GGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred ChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 986 445454443 34689999999864
No 406
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.02 E-value=0.54 Score=45.95 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=58.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc---CCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI---QKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l---~~~dvIil~vp~ 83 (474)
.+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.+... +....+..+.+..+ ...|++|-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 4699999999999999888888987 888899988877665544311 11111122222221 237899988865
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+..++. ....++++..++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3445556666666554
No 407
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.18 Score=48.06 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 46888885 99999999999999999999999987665544322100 001 1222333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.++..+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555445788887764
No 408
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.32 Score=51.01 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--C
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p 82 (474)
..+|.|+|+|..|.+.++.|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2223 2121 11111122233444 78766644 2
Q ss_pred CC-hhHHHHHH---------HHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AG-APVDETIK---------TLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~-~~v~~vl~---------~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+. ..+....+ ++...+... .|-|-.|++.-.++.-+...|...|..+.
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 21 12222211 233222222 34466777776666666677777665443
No 409
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.98 E-value=0.088 Score=52.25 Aligned_cols=81 Identities=14% Similarity=0.302 Sum_probs=53.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.||+|+| .|..|.-|.+.|..+. +|-+.....++. + . ..+.+++.++ +|++|+|+|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 4799998 8999999999999874 333332221110 0 0 1134455555 99999999987 4
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+....+ ...|..|||.|+..
T Consensus 62 s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHH---HhCCCEEEECChHH
Confidence 44444443 24688999999754
No 410
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.19 Score=48.98 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 4588887 6999999999999999999999999887665543210 01 2223333444445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 555666555544444677776554
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.94 E-value=0.25 Score=47.73 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=34.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677777 5999999999999999999999999877666543
No 412
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.93 E-value=0.03 Score=57.99 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=31.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
No 413
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.25 Score=47.33 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=53.1
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|+|. |.+|..++..|+++|++|++.+|++++.+.+.+.... .. ...+-.-+.+...+
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~~ 64 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAASL 64 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHHH
Confidence 5778875 8999999999999999999999998877665542210 01 22333334444445
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...++++.....+=+.||++...
T Consensus 65 ~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 65 AAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55555554444334666666543
No 414
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.91 E-value=0.12 Score=50.55 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcC--CCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEG--DLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|.|||.|.+-.....-.... |..|..+|++++..+...+-..... +.++.. +.+..++...+..+|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999987655444333 4578899999987665433211000 002222 2344444444556999999876
Q ss_pred CC---hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 83 AG---APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~---~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+ ..-..+++.+...+++|..|+--+..
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 54 24567889999999999998877543
No 415
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.91 E-value=0.24 Score=56.24 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=65.6
Q ss_pred CcEEEEcccHhHHHH-HHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec--C
Q 011931 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v--p 82 (474)
.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+- |
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI~ 74 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSIS 74 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCcC
Confidence 469999999999997 9999999999999997643 333443322 2222 112233344 89888653 3
Q ss_pred CC-hhHHHHH---------HHHHhcccC--CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 83 AG-APVDETI---------KTLSAYMEK--GDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 83 ~~-~~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.. ..+.... -+++..+.+ ..|-|..|+++-.++.-+...|...|.
T Consensus 75 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 22 2222221 123222222 245577777776666666677777664
No 416
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.19 Score=49.03 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35778886 99999999999999999999999988766543
No 417
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.90 E-value=0.092 Score=52.40 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=64.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
++-|.|.|..|+..|.++...|.+|.+++.+|-+.-+..=.| +. ..+.+|++.. +|++|.++-...
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnkd--- 276 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNKD--- 276 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCcC---
Confidence 477889999999999999999999999999987655444322 33 3367888887 999999987642
Q ss_pred HHH-HHHHhcccCCCEEEecCC
Q 011931 89 ETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 89 ~vl-~~l~~~l~~g~iiId~st 109 (474)
|+ .+-...++.|.|+.+.+.
T Consensus 277 -Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 -VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -ccCHHHHHhccCCeEEecccc
Confidence 33 233445788888887764
No 418
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.88 E-value=0.28 Score=51.26 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=51.1
Q ss_pred CcEEEEcccHh-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||.|.. ...+...|+.. +-+|.++|.++++.+... +..... + ..++..+++.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 68999999984 22355556543 358999999998766432 211111 0 1257788899999888 999
Q ss_pred EEEecCCC
Q 011931 77 IIMLVKAG 84 (474)
Q Consensus 77 Iil~vp~~ 84 (474)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
No 419
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.24 Score=48.09 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=52.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+... . .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHHH
Confidence 4577777 68999999999999999999999998765544321 1 2223233344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.+...+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444677776653
No 420
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.2 Score=48.22 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.+++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.... . ... .+..++..
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------~------~~~-~~~~~~~~ 65 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------D------VAG-ARVLAVPA 65 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------c------cCC-ceEEEEEc
Confidence 33333334566776 68999999999999999999999998877766543211 0 000 00222333
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-+.+...++.+++++.....+=+++|++...
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 3444455666666666555455677776543
No 421
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.82 E-value=0.24 Score=51.85 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=50.5
Q ss_pred CcEEEEcccHhHHH--HHHHHHHC-----CCcEEEEeCChHHHHHHHH---hhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQN--LALNIAEK-----GFPISVYNRTTSKVDETVE---RAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|||+|||.|.. .. +...|+.. +-+|+++|.++++++.... +.... + ..++..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 69999999985 32 44455533 3589999999987665322 11110 0 2257788899999888 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||.++-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998665
No 422
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.82 E-value=0.11 Score=51.36 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|.||| -..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 4799999 678899999999988 6788887532 2246666676 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 664322 24578999999998654
No 423
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.81 E-value=0.31 Score=47.01 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=71.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.-||+|. | .++..+++.|.. |+++|.++..++...+..... ++. +..++...-...|+|+..... ..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~---~~~~~~~~~~~fD~Vvani~~-~~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVE---LNVYLPQGDLKADVIVANILA-NP 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCC---ceEEEccCCCCcCEEEEcCcH-HH
Confidence 4788999998 6 455566777775 999999999887666543322 110 000010000027988876544 35
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+..++.++...+++|..++-.+.. ......+.+.+...|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~-~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL-EEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-HhhHHHHHHHHHHCCCEEEE
Confidence 667778888889988777654332 34455666777777876654
No 424
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.2 Score=48.11 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+-+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 4677776 8999999999999999999999999887765543211 00 0 1 3333333444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..++++.....+-+++|+++..
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665554444777776653
No 425
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.25 Score=46.94 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
.+|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 3566776 79999999999999999999999999887776543
No 426
>PRK08017 oxidoreductase; Provisional
Probab=94.75 E-value=0.23 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
++|-|.|+ |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 36889997 9999999999999999999999998776544
No 427
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.75 E-value=0.35 Score=51.23 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=64.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HH---HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KV---DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~---~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v- 81 (474)
..+|+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. .++.+.+. .+....+ .+.... +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL-----LVETEAS-AQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE-----EEeCCCC-hHHccC---CCEEEECCC
Confidence 35799999999999999999999999999995432 11 23322110 0111222 333444 89988754
Q ss_pred -CCCh-hHHHHH---------HHH-Hhc-cc-----CCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 82 -KAGA-PVDETI---------KTL-SAY-ME-----KGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 82 -p~~~-~v~~vl---------~~l-~~~-l~-----~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
|+.. .+.... -++ ... .. ...|-|..|++.-.++.-+...|...|..
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~ 143 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHR 143 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 3322 222211 122 111 21 13455667777766666666777766643
No 428
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.74 E-value=0.28 Score=47.05 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.++.+++.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3577887 6999999999999999999999999887766544
No 429
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.73 E-value=0.27 Score=51.25 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=50.0
Q ss_pred CcEEEEcccHhHH-HHHHHHHHC-----CCcEEEEeCC-hHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQ-NLALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|||+|||.|..-. .+...|+.. +-+|..+|++ +++++... +..... + ...+..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 6899999999744 345555542 3589999999 78765422 111110 0 1246778889999887 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
No 430
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.23 Score=47.43 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=35.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 35688887 5899999999999999999999999887665544
No 431
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.70 E-value=0.33 Score=46.74 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 3566776 5789999999999999999999999887766543210 01 2223333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544445677776653
No 432
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.69 E-value=0.21 Score=47.98 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=29.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-----------CcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 40 (474)
..+|.|||+|..|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 358999999999999999999864 2889999764
No 433
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.68 E-value=0.2 Score=48.21 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.++..+..... .. ...+-.-+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 4788887 588999999999999999999999988776654432100 01 2222223344455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666555544567776554
No 434
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.68 E-value=0.27 Score=47.42 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..++-|+|.|..+.++++.+...||+|+++|..++......-... .......+++....+...+.|++++-+...
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h~~ 174 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDHAL 174 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCChHH
Confidence 357999999999999999999999999999977652211100000 012233456665545456888888866532
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
=..++..+++.. +-..|=-.++- ....++.+.|.+.|+
T Consensus 175 D~~~L~~aL~~~-~~~YIG~lGSr--~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRRG-DFAYFGLIGSK--TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 224445544211 22233333332 345556666666554
No 435
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.67 E-value=0.12 Score=50.34 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=58.3
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-++ +|.+|+..|...++.|++++... .++.+..++ +|+++.++.-+.-
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 4699999665 69999999999999999998542 345566666 9999999977643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ .+.+++|.+|||.+...
T Consensus 213 i~------~d~vk~gavVIDVGinr 231 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred cc------cccccCCCEEEecCCcc
Confidence 33 35688999999998864
No 436
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.12 Score=50.92 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=56.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++|.||| -..+|.+++..|.++ +..|+++... +.++.+..++ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999988 4688887632 2245666676 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 775332 24578999999998764
No 437
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.24 Score=51.29 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=51.7
Q ss_pred CcCcEEEEcccHhHHHH-HHHHHHC-----CCcEEEEeCChHHHHHH---HHhhhh-cC-CCCccccCCHHHHHhhcCCC
Q 011931 6 QLTRIGLAGLAVMGQNL-ALNIAEK-----GFPISVYNRTTSKVDET---VERAKK-EG-DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~l-A~~L~~~-----G~~V~v~dr~~~~~~~l---~~~~~~-~~-~~~~~~~~s~~e~~~~l~~~ 74 (474)
++.||+|||.|+.+.+. ...++.. +.++.++|.++++.+.. .+.... .+ ..++..++|.+++++. +
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---A 78 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---A 78 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---C
Confidence 35689999999998773 3333332 45889999999886622 111111 00 1256778899999888 9
Q ss_pred cEEEEecCCC
Q 011931 75 RVIIMLVKAG 84 (474)
Q Consensus 75 dvIil~vp~~ 84 (474)
|+|+.++-.+
T Consensus 79 dfVi~~~rvG 88 (442)
T COG1486 79 DFVITQIRVG 88 (442)
T ss_pred CEEEEEEeeC
Confidence 9999998554
No 438
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.22 Score=47.71 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 4677887 689999999999999999999999987766554432100 001 2233333444456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.+...+=++||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666666665555445677776643
No 439
>PRK14852 hypothetical protein; Provisional
Probab=94.64 E-value=0.17 Score=57.35 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. .....+-.-+...++.+..+. +++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN-P~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN-PFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC-CCCeEEEEecC
Confidence 4589999999999999999999997 77888866432222222110 000000111122333333332 56666666543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~v~~pvsg 136 (474)
..++.++++ +..-++|||+......+. ..+...+.+.++.++.+.+.|
T Consensus 411 -I~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 222333333 345589999887654333 344455667889998877654
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.64 E-value=0.16 Score=50.38 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=72.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~- 86 (474)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|++.+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999998888999999999999999876543211 011 25566677887777 9999999886311
Q ss_pred --HHHH-------H-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 87 --VDET-------I-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 87 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+... + .+.+..++++.+++ .+...|. +.+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEEe
Confidence 1111 1 34667788998555 4555443 2244568899887643
No 441
>PLN00016 RNA-binding protein; Provisional
Probab=94.64 E-value=0.18 Score=51.81 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCcCcEEEE----c-ccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 5 KQLTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 5 ~~~~~IgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
.++++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 345789999 6 6999999999999999999999998765
No 442
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.63 E-value=0.2 Score=50.97 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=59.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC---CHHHHHhhc---CCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR---DPESFVNSI---QKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~---s~~e~~~~l---~~~dvIil~v 81 (474)
++.|+|+|.+|...+..+...|. +|++.|+++++++...+.+... ..... ...+.+..+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998877777885 7778899999998776644211 11111 111112111 2379999998
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.... .+.+....++++-.|+..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 7543 3444455566666666555543
No 443
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.62 E-value=0.25 Score=47.95 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=58.4
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++-|-| .+-+|..+|+.|+++|++|.+..|+.++++++.++.... . . ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----~---~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----T---G----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----h---C----ce----EEEEECcCCChh
Confidence 34566777 789999999999999999999999999999988765321 0 0 11 344444444555
Q ss_pred hHHHHHHHHHhcccCCCEEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.+..+.+++.....+=+++|+..
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEECC
Confidence 66666666665433345666644
No 444
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.22 Score=49.24 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4577777 59999999999999999999999998877766543210 0000 2223233334455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555455777776543
No 445
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.61 E-value=0.26 Score=47.15 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|-|+| .|.+|..+++.|+++|++|++++|+++..+++.+..... -.. .+.+..-+.+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 73 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEE 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHH
Confidence 35677776 689999999999999999999999987766554432100 001 223333344445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+..+++++.....+=+.+|.+...
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5666666665544444566665543
No 446
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.58 E-value=0.25 Score=47.36 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------QGLS---AHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCce---EEEEEccCCCHHH
Confidence 4688887 59999999999999999999999998776655432210 0000 2222223334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++...+.+=++||++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 566666555544455667766543
No 447
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.17 Score=47.98 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++.|.|. |.+|..++..|+++|++|++.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889986 899999999999999999999999887766554
No 448
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.34 Score=46.58 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=36.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
|+++-|+| .|.+|..+++.|++.|++|.+.+|++++.+++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 34588887 7999999999999999999999999988776654
No 449
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.059 Score=54.10 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=47.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cC---CHHHHHhhcCCCcEE---EE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FR---DPESFVNSIQKPRVI---IM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~---s~~e~~~~l~~~dvI---il 79 (474)
|++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. ++ .+.++++. ||+| |.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~---~DViT~EfE 71 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAK---CDVITYEFE 71 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhh---CCEEEEeec
Confidence 46899999999999999999999999999998876533322211 0222 23 35566666 9988 34
Q ss_pred ecCC
Q 011931 80 LVKA 83 (474)
Q Consensus 80 ~vp~ 83 (474)
-||.
T Consensus 72 ~V~~ 75 (375)
T COG0026 72 NVPA 75 (375)
T ss_pred cCCH
Confidence 4554
No 450
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.21 Score=51.02 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=66.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH------------------HHHHHHHhhhhcCCCCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS------------------KVDETVERAKKEGDLPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------------------~~~~l~~~~~~~~~~~~~~~~s~~e~~ 68 (474)
-.+|+|=|.|++|..+|+.|.+.|.+|++++-+.. +..++.+.. +.+..+. +++.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~------ga~~i~~-~e~~ 279 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA------GAEYITN-EELL 279 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc------CceEccc-cccc
Confidence 35899999999999999999999999988865544 111111110 1222222 3333
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.. .||+.+-|--.. ++ ..-++.|.. ++|+...|.+ ++.+..+.+.++|+-|+.
T Consensus 280 ~~--~cDIl~PcA~~n-----~I~~~na~~l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 280 EV--DCDILIPCALEN-----VITEDNADQLKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred cc--cCcEEccccccc-----ccchhhHHHhhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 21 388877654433 33 222333433 3888888875 445566667789987765
No 451
>PRK07877 hypothetical protein; Provisional
Probab=94.47 E-value=0.15 Score=56.54 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=69.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+| +|+..|..|+..|. +++++|.+.=....+..........+..-+...++.+..+. +++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in-p~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD-PYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4589999999 89999999999994 88999876422211111100000000011112233333222 56666666654
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
-. .+.++++. ..-++|||++-.. ..-..+.+.+..+++.+|.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 22 33344443 3458999998865 2323344555677888887654444
No 452
>PRK05868 hypothetical protein; Validated
Probab=94.46 E-value=0.044 Score=56.20 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=32.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 57899999999999999999999999999998865
No 453
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.46 E-value=0.25 Score=47.58 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEE--------eCChHHHHHHHHhhhhcCCCCccccC----------CHH-HH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVY--------NRTTSKVDETVERAKKEGDLPLFGFR----------DPE-SF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~--------dr~~~~~~~l~~~~~~~~~~~~~~~~----------s~~-e~ 67 (474)
-+++.|-|.|.+|..+|+.|.+.|..|.+. |.+.-..+++.+.....+. ++.... +.. ++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEecccccc
Confidence 357999999999999999999999877654 6654445555442111110 011111 121 44
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... +||+++-|--...-.++.+.. .+++ -++|+...|.... .+-.+.|.++|+.++.-
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 321 499999985444222222220 3332 3688888887643 33344889999988754
No 454
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.43 E-value=0.37 Score=45.50 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 5889999999999999999999999887766543
No 455
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.42 E-value=0.38 Score=50.81 Aligned_cols=120 Identities=19% Similarity=0.140 Sum_probs=66.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... ......+ .+.... +|+||..- |...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIAALS-DSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceeccCC-hhHhhC---CCEEEECCCCCCCC
Confidence 57999999999999999998 599999999664433222211000 1111112 233344 89887753 3221
Q ss_pred -hHHHHH---------HHHH-hcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 -PVDETI---------KTLS-AYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 -~v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.... -+++ ..... ..|-|-.|+++-.++.-+...|...|..+.-.+..|
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222211 1222 22222 234466777776566666677777776554444334
No 456
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.39 E-value=0.3 Score=46.19 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=34.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34677887 779999999999999999999999987765544
No 457
>PRK08643 acetoin reductase; Validated
Probab=94.38 E-value=0.27 Score=47.03 Aligned_cols=85 Identities=11% Similarity=0.157 Sum_probs=53.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+++...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 455665 88999999999999999999999998776665443210 0000 11222223444556
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665554445677776654
No 458
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.15 Score=50.34 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++|.||| -..+|.++|..|.++ +..|+++... +.++++..++ +|+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------------------TDDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999887 6789987532 2245666676 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 664322 24578999999998654
No 459
>PRK09186 flagellin modification protein A; Provisional
Probab=94.36 E-value=0.28 Score=46.85 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|++.|++|.+.+|++++.+++.+.... ... . .. ..++..-+.+..+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~-------~~~--~---~~---~~~~~~Dl~d~~~ 69 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGK-------EFK--S---KK---LSLVELDITDQES 69 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHh-------hcC--C---Cc---eeEEEecCCCHHH
Confidence 3577887 58999999999999999999999998877665543210 000 0 00 1223334444455
Q ss_pred HHHHHHHHHhcccCCCEEEecC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~s 108 (474)
+..+++++.....+=+++|++.
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 70 LEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 6666666655444456777765
No 460
>PRK06720 hypothetical protein; Provisional
Probab=94.32 E-value=0.39 Score=43.44 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=31.5
Q ss_pred cEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 9 RIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 9 ~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.+-|.|.+ .+|.+++..|+++|++|.+++++.+..+...
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~ 57 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45666765 5999999999999999999999977655443
No 461
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.44 Score=46.17 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ..++..=+.+...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------------------L---VVGGPLDVTDPAS 64 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------------c---ceEEEccCCCHHH
Confidence 4688887 5999999999999999999999999887766543210 1 2222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++.+.....+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444466666544
No 462
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.28 E-value=0.46 Score=44.92 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=55.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.-+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 45688887 7999999999999999999999999877765543210 01 222222233444
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.+...+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555555677776554
No 463
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.34 Score=46.85 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.+|-|.|. |.+|..+++.|++.|++|++.+|+++..+...
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 50 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAV 50 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46878875 89999999999999999999999987765543
No 464
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.28 E-value=0.19 Score=51.89 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.. .....+-.-+....+.+..+. +++-|.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN-PLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC-CCcEEEEEecc
Confidence 3579999999999999999999998 78899977432222221110 000000001111222222222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-..+. + ...+..-++|||++-.. ..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~~-~---~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPSN-A---VELFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChhH-H---HHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11111 1 22344568999987653 333334555667788888776554
No 465
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.29 Score=47.21 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++-+-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4677777 66899999999999999999999998877665543210 0000 1222233444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544567777654
No 466
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.38 Score=46.71 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=54.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 7999999999999999999999999877665543210 01 2233333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556665555444444677776543
No 467
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.25 E-value=0.095 Score=53.35 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=53.9
Q ss_pred cCcEEEEc-ccHhHHHHHH-HHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLAL-NIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|++||||| .|.+|..|.+ .|.+..++ +..+..+. .......-.... ..+....+.+++ .. +|++|+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 47899999 5999999998 55555666 66654331 111111100000 001111223443 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCC--CEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKG--DCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g--~iiId~st~~ 111 (474)
|.+ ....+...+. ..| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 875 4455544443 357 5799998754
No 468
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.46 Score=45.96 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCCCCcCc-EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 1 MVEGKQLTR-IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 1 m~~~~~~~~-IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
|++-....| +-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 444333334 45556 5789999999999999999999999887766554
No 469
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.25 E-value=0.65 Score=43.96 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=51.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCcccc---CCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGF---RDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~---~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|-|||.|.++..=+..|++.|.+|+++.... +.+..+.+.+ +++.. -...++ +. +++||.|+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~------~i~~~~r~~~~~dl-~g---~~LViaATdD 95 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYG------NLKLIKGNYDKEFI-KD---KHLIVIATDD 95 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCC------CEEEEeCCCChHHh-CC---CcEEEECCCC
Confidence 479999999999999999999999999997653 2344444332 12221 123333 33 8999999876
Q ss_pred ChhHHHHHHHHH
Q 011931 84 GAPVDETIKTLS 95 (474)
Q Consensus 84 ~~~v~~vl~~l~ 95 (474)
. .+..-+....
T Consensus 96 ~-~vN~~I~~~a 106 (223)
T PRK05562 96 E-KLNNKIRKHC 106 (223)
T ss_pred H-HHHHHHHHHH
Confidence 5 5665554443
No 470
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.24 E-value=0.082 Score=41.27 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998764
No 471
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.22 E-value=0.071 Score=40.47 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.3
Q ss_pred EEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 472
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.21 E-value=0.38 Score=45.94 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=79.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+.+..+. +++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in-P~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN-PECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC-CCcEEEEeeee
Confidence 4589999999999999999999997 889999774322222211100 00000001111222233222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC------CCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG------GSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g------g~~~~~~ 157 (474)
-..+.+..+. ...-++|||+.-.. .....+.+.+...++.++.+.-.|+. ..| .+-++ +++ ...
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~~----~dp~~i~i~di~~t~~~p-la~ 160 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGGK----LDPTRIRVADISKTSGDP-LAR 160 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcCC----CCCCeEEEccEeccccCc-HHH
Confidence 1111222222 12357999986654 33345666677778888876433331 122 22221 232 345
Q ss_pred HHHHHHHHHhc
Q 011931 158 YIEDILLKVAA 168 (474)
Q Consensus 158 ~v~~ll~~lg~ 168 (474)
.++.-|+.-+.
T Consensus 161 ~~R~~Lrk~~~ 171 (231)
T cd00755 161 KVRKRLRKRGI 171 (231)
T ss_pred HHHHHHHHcCC
Confidence 67777776554
No 473
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.21 E-value=0.37 Score=45.90 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=56.8
Q ss_pred EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC--
Q 011931 33 ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-- 110 (474)
Q Consensus 33 V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 110 (474)
|.+||+++++.+.+.+.. ++..+++++++++ ..+|+|++|.|+.. ..+.... .|+.|.-|+-.+.+
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~--~~vDaVviatp~~~-H~e~a~~---aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLP--EDVDIVVEAASQEA-VKEYAEK---ILKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhc--CCCCEEEECCChHH-HHHHHHH---HHHCCCCEEEECCccc
Confidence 458999999998887754 2457889999874 24999999999874 4444333 34456544445553
Q ss_pred -CchhHHHHHHHHHHcCCeEE
Q 011931 111 -WYENTERREKAMAELGLLYL 130 (474)
Q Consensus 111 -~~~~~~~~~~~l~~~g~~~v 130 (474)
.....+++.+..++.|..+.
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVY 93 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEE
Confidence 23445666666677776543
No 474
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.20 E-value=0.3 Score=46.36 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688888 7999999999999999999999999876655443
No 475
>PRK14851 hypothetical protein; Provisional
Probab=94.20 E-value=0.25 Score=54.52 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=69.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|.+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+.-.++.+..+. +++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-P~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-PFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-CCCeEEEEecC
Confidence 4589999999999999999999997 77888866422222221110 000000001111223333222 45555565543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .+-+..+ +..-++|||+.......+ ..+.+.+...++.++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 21 2222333 345689999987643233 344556667788888876554
No 476
>PRK06753 hypothetical protein; Provisional
Probab=94.20 E-value=0.055 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=32.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|+|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
No 477
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.19 E-value=0.28 Score=46.71 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=53.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|.| .|.+|..+++.|++.|++|++.+|+++..+++.+.... .-.. ..++..=+.+...+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~~ 65 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDEI 65 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHHH
Confidence 577787 79999999999999999999999998776665543210 0000 12222233444456
Q ss_pred HHHHHHHHhcccCCCEEEecCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st 109 (474)
+.+++.+.+.+.+=++||.+..
T Consensus 66 ~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 66 ADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 6666666555555566666554
No 478
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.18 E-value=0.28 Score=50.88 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=61.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~~ 85 (474)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|+..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996543211 11111 2222 2 22221 1238988765 34332
Q ss_pred -hHH---HHHH--HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 86 -PVD---ETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 86 -~v~---~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.+. .++. +++..+.+..|-|..|++.-.++.-+...|...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 122 2221 22222223345566777775555556677776663
No 479
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.18 E-value=0.53 Score=48.28 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+.. .....+..-+....+.+..+. +++-|.+.+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCCeeEEeeee
Confidence 3579999999999999999999997 89999987432222221100 000000011112222232222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ...+.+ .+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 120 i~-~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 120 LT-AENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred cC-HHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 11 112222 344568999988764 333334455566788888776543
No 480
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.17 E-value=0.058 Score=55.94 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999754
No 481
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.15 E-value=0.91 Score=41.53 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=76.1
Q ss_pred EEEEc--ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 10 IGLAG--LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 10 IgiIG--lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+-=|| .|.++--+| ++....+|+.+|++++.++........-+..++.. ..+.-++...+.++|.||+--. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 44455 556666666 44455689999999988766544332211012222 2233445555667999998876 36
Q ss_pred HHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCC-eEEecCCCC
Q 011931 87 VDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGL-LYLGMGVSG 136 (474)
Q Consensus 87 v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~v~~pvsg 136 (474)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+..-++-
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeec
Confidence 899999988888875 566776664 455566677788887 555444443
No 482
>PRK06194 hypothetical protein; Provisional
Probab=94.12 E-value=0.49 Score=46.19 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=54.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
++|-|.| .|.+|..+++.|++.|++|++.||+.+..++..+.... .. .++.++ =+.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4677777 68999999999999999999999998776655432210 01 223222 23333
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666655544445777777654
No 483
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.11 E-value=0.43 Score=46.54 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=78.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|++.| -+++++|.+.-....+..+... ....+-.-+.-.++.+..+. +++-+.+++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~IN-P~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQIN-PECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHC-CCcEEEEEecc
Confidence 457999999999999999999999 4899999774332222211100 00000000111222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC------CCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG------GSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g------g~~~~~~ 157 (474)
- ..+-.+.+.. ..-++|||+.-.. .....+.+.+...++.++.+.=.|+ +--| .+-++ ++ ....
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~gGag~----k~dp~~~~~~di~~t~~~-pla~ 179 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTGGAGG----QIDPTQIQVVDLAKTIQD-PLAA 179 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEECCccc----CCCCCeEEEEeeecccCC-hHHH
Confidence 1 1112222221 2357899987643 3344566777778888886632222 2222 23222 23 3446
Q ss_pred HHHHHHHH-Hh
Q 011931 158 YIEDILLK-VA 167 (474)
Q Consensus 158 ~v~~ll~~-lg 167 (474)
.++.-|+. .+
T Consensus 180 ~~R~~lr~~~~ 190 (268)
T PRK15116 180 KLRERLKSDFG 190 (268)
T ss_pred HHHHHHHHhhC
Confidence 67777776 44
No 484
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.09 E-value=0.13 Score=51.30 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=55.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCc---EEEEe--CChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVYN--RTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~d--r~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++|||+| .|.+|+.|...|.+..+. +.++- |+..+- -++..+. +..-.+..+.. .++++|++|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~-------~~v~~~~~~~~-~~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKS-------IGVPEDAADEF-VFSDVDIVFF 72 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcc-------ccCcccccccc-ccccCCEEEE
Confidence 46899997 899999999999996553 34443 333222 2222211 11111111111 1234999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+.. ..+.+...+. +.|.+|||.++..
T Consensus 73 ~ag~~-~s~~~~p~~~---~~G~~VIdnsSa~ 100 (334)
T COG0136 73 AAGGS-VSKEVEPKAA---EAGCVVIDNSSAF 100 (334)
T ss_pred eCchH-HHHHHHHHHH---HcCCEEEeCCccc
Confidence 99875 3455554443 4689999988864
No 485
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.07 E-value=0.52 Score=49.44 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHH--HHHHHHhhhhcCCCCccc--c-CCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKKEGDLPLFG--F-RDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~--~-~s~~e~~~~l~~~dvIil 79 (474)
+++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+++.+ + +.. . .+.+ .+.+ +|+||.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~-~~~~---~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLE-WLLE---ADLVVT 74 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChH-Hhcc---CCEEEE
Confidence 36799999999999999999887 5899999976432 223321 2 222 1 2333 3344 898877
Q ss_pred ec--CCC-hhHHHHHH---------HHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 80 LV--KAG-APVDETIK---------TLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 80 ~v--p~~-~~v~~vl~---------~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+- |+. ..+....+ +++.. +....|-|..|+++-.++.-+...|...|..+.
T Consensus 75 SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 75 NPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 54 322 22222211 23322 232334566677765555556677777665443
No 486
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.07 E-value=0.33 Score=46.07 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|+| .|.+|..+++.|+++|++|++.+|++++.+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4788998 5999999999999999999999999887665543
No 487
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.06 E-value=0.061 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=32.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
++|.|||.|..|..+|..|++.|++|++++++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5799999999999999999999999999999864
No 488
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.05 E-value=0.46 Score=45.75 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
+++-|+| .|.+|..+++.|++.|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566777 578999999999999999999999987766654
No 489
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.01 E-value=0.36 Score=46.35 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|+.|++.|++|++.+|++++.+.+.+.... .-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--------------LGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEEccCCCHHH
Confidence 5688887 79999999999999999999999998776655432210 0001 2233333344455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..++.+.....+=+.||+++..
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665554445677777543
No 490
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.00 E-value=0.42 Score=45.37 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=64.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe-----
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML----- 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~----- 80 (474)
.++|.=||+| |..|+..|++.|.+|++.|.+++.++.........+ ..+ -...+.+|+.+.=++-|+|+++
T Consensus 60 g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3568888988 679999999999999999999988876654433221 111 1234566666532347988775
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDG 107 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (474)
||++ +.++..+...++||.+++..
T Consensus 137 v~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 137 VPDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEe
Confidence 4544 44677777888888766543
No 491
>PRK08589 short chain dehydrogenase; Validated
Probab=93.97 E-value=0.48 Score=46.04 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+|+.|+++|++|.+.+|+ ++.+++.+.... .-.. ...+.+=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--------------NGGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--------------cCCe---EEEEEeecCCHHH
Confidence 3566777 5899999999999999999999999 655554432210 0001 2333444455556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 777777766555444677776654
No 492
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.41 Score=45.80 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... . .. ...+..-+.+...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------~------~~---~~~~~~D~~~~~~ 69 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--------G------GE---AVALAGDVRDEAY 69 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------C------Cc---EEEEEcCCCCHHH
Confidence 3577777 689999999999999999999999988777665432110 0 00 1222222333345
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 555666655544444666666543
No 493
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.58 Score=44.38 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 4688887 599999999999999999999999977665544
No 494
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.92 E-value=0.44 Score=49.72 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=66.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEE-Ee----------CChHHHHHHHHhhhh-cCC---C----CccccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISV-YN----------RTTSKVDETVERAKK-EGD---L----PLFGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~l~~~~~~-~~~---~----~~~~~~s~~e~ 67 (474)
-++|.|.|.|++|...|..|.+.|.+|++ .| .+.+++....+.... .+. + +... -+.+++
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCCccc
Confidence 35899999999999999999999999986 67 555554311110000 000 0 0111 123333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.. ..||+++-|.-...-..+....+.. ++. +|+..+|. |.+ .+..+.+.++|+.++.
T Consensus 307 ~~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P~t-~eA~~~L~~rgI~~~P 364 (444)
T PRK14031 307 WG--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-PST-PEAIKVFQDAKILYAP 364 (444)
T ss_pred cc--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-CCC-HHHHHHHHHCCcEEeC
Confidence 22 1389888776544222222233322 233 66666776 444 4556677889988875
No 495
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.91 E-value=0.74 Score=42.63 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred CcEEEEcccH--hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCCccc-cCCHHHHHhhc-CCCcEEEEecC
Q 011931 8 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLPLFG-FRDPESFVNSI-QKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~-~~s~~e~~~~l-~~~dvIil~vp 82 (474)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++...+.....+ ..++.. ..+..+....+ ...|.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 4688888876 333333332 234589999999988775544322110 001221 23444444333 34899998664
Q ss_pred CChhHHHHHHHHHhcccCCCE-EEecCCCCchhHHHHHHHHHHcCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDC-IIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.. ....+++.+...|++|.. +++.. ......+....+++.|+
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 121 SE-KLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 33 567788888888888665 44443 33455666667777775
No 496
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.91 E-value=0.13 Score=50.09 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011931 11 GLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 44 (474)
Q Consensus 11 giIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (474)
-|.| +|.+|+.+++.|++.|++|++.+|++++..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 36 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGA 36 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence 4666 799999999999999999999999987643
No 497
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.32 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
+++-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE 52 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 35667774 8999999999999999999999998877766543
No 498
>PRK07236 hypothetical protein; Provisional
Probab=93.89 E-value=0.076 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999999999998864
No 499
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.85 E-value=0.2 Score=49.09 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++.||| -..+|.+++..|.+ ++..|++++.+. .++.+.++. +|+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------------------~~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------------------PDLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecC
Confidence 4799999 66789999999998 678898887442 245566666 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+.-+. ...+++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 764322 13468999999998653
No 500
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.84 E-value=0.17 Score=41.80 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|.+|..=++.|++.|.+|+++.++.+..+ .. ++.. ...++ .+..+++|+.++.+. .
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~-------i~~~~~~~~~---~l~~~~lV~~at~d~-~ 72 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GL-------IQLIRREFEE---DLDGADLVFAATDDP-E 72 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TS-------CEEEESS-GG---GCTTESEEEE-SS-H-H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hH-------HHHHhhhHHH---HHhhheEEEecCCCH-H
Confidence 4799999999999999999999999999998861111 11 1111 12222 244489999888775 4
Q ss_pred HHHHHH
Q 011931 87 VDETIK 92 (474)
Q Consensus 87 v~~vl~ 92 (474)
+...+.
T Consensus 73 ~n~~i~ 78 (103)
T PF13241_consen 73 LNEAIY 78 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
Done!