BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011932
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 277/486 (56%), Positives = 328/486 (67%), Gaps = 65/486 (13%)
Query: 4 RVLVSSASMALR-KSPQFKILLSKFHIFKPFSYNKYPFQRISSMVDVLCKAFGPCYGLKR 62
RV S+ASM LR KS Q L S +F F+ R S +++CK L +
Sbjct: 9 RVSTSAASMLLRRKSRQLGFLASSSPLFSSFN----SMNRTISSCNIVCKV------LHK 58
Query: 63 FSIEGRLW---------IHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKR 113
S+ +W HS P R + + K SENSSS DG K+KRKKLKGKR
Sbjct: 59 ESLTRPMWNVSFLRSSSFHSTPARETGDDDISK---SENSSSQDGDSCTKLKRKKLKGKR 115
Query: 114 AVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPE 173
AVVRWLK FR+KKKKE+ERMT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPE
Sbjct: 116 AVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPE 175
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
ILTPEEHFY+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKE
Sbjct: 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 235
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKVLLIFLIHTLYK 293
IA ELARLTGGIVL++HE NTIIMYRGKNY QPPTEIMSPRITL RKK
Sbjct: 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKK------------ 283
Query: 294 YAECIIFFFLLLTALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ 353
ALDKSK RD LRAV+KYIP+LEQEL+LL+AQAET+ + + +D Q
Sbjct: 284 -------------ALDKSKCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQ 330
Query: 354 --NTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLY 411
+ EL K S + + E D L A+DS DLSDIFETDSE E + K E RPL+
Sbjct: 331 ERSEELKKIIERSEECLEDEQEEDEAGLEL-ATDS-DLSDIFETDSELE-DAKTE-RPLF 386
Query: 412 LDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED---SSHFDEVDKMFLRAASL 468
L++F+KFP N+ E EDF D AKS G++ D S +FDEVDKMFLRAA L
Sbjct: 387 LEEFEKFPAINNREDEDFG--------DLGKAKSEGEENDDDKSPNFDEVDKMFLRAAFL 438
Query: 469 LKKQKR 474
LKK++R
Sbjct: 439 LKKKRR 444
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 257 MYRGKNYAQP 266
+YRGKNY +P
Sbjct: 649 LYRGKNYRRP 658
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 257 MYRGKNYAQP----PTEIMSPRITLSR 279
+YRGKNY +P P+ +++ R L R
Sbjct: 651 LYRGKNYRRPTKSAPSNLLTKREALQR 677
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 563 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 622
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKV 282
V A L + G+++ I E + I++YRGKNY +P +++M+ + RK +
Sbjct: 623 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKAL 682
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 233
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG+++ + + I++YRGK++
Sbjct: 421 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 449
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 157 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 214
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 215 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 345
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 99 AGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLK 158
G A + K+ K +R VR +E + + I+ ++R+ RK + L
Sbjct: 167 TGKAPLLTKEEKARRRGVR----LHTPLGQETPQTVSAHGIMMEVRERRKMD------LA 216
Query: 159 KIEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 215
++ P + E+ +P LTP E +K + +GR G+ ++ +H HW++
Sbjct: 217 RVSPGDGRSREEVLGEP--LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 274
Query: 216 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ KV + ++K + L +GG V IH ++ +YRG++Y
Sbjct: 275 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 250 HEENTIIMYRGKNY 263
N +I+YRG+NY
Sbjct: 221 RNINILILYRGRNY 234
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 18/168 (10%)
Query: 100 GVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKK 159
G A + K+ K +R VR +E R + I+ ++R RK + L +
Sbjct: 164 GKAPLLTKEEKARRRGVR----LHTPLGEEAPRTVSAHGIMMEVRGRRKLD------LAR 213
Query: 160 IEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKH 216
+ P + E+ +P LT E +K + +GR G+ ++ +H HW++
Sbjct: 214 VSPGDGRSREEVLGEP--LTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQ 271
Query: 217 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ KV + ++K + L +GG V IH ++ +YRG+NY
Sbjct: 272 EICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFLYRGRNY 317
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 160 CTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-Y 218
Query: 250 HEENTIIMYRGKNY 263
N +++YRG+NY
Sbjct: 219 RNINILVLYRGRNY 232
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L GG V+ + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PE LT +E + GR+ +G+ G+Y ++ N+ ++ + +++ + +
Sbjct: 358 PEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDF 417
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++I A+L L +++ E I+++RG+ +
Sbjct: 418 RKIGAKLKDLVPCVLVSFENEQ-ILIWRGREW 448
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRVG 279
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis
thaliana GN=At4g19050 PE=3 SV=2
Length = 1201
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 24/206 (11%)
Query: 128 KEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEIL----TPEEHFYF 183
KEY + KIL R R+++E + + KES ++ HD E L T E+
Sbjct: 145 KEYSAV----KILVTRRDEREEKESTTIKVGPLTEKESLDLLHDAEDLLTSFTSEDWPVL 200
Query: 184 LKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTG 243
LK R C N + I + +++ L K ++V S +K ++A+ ++
Sbjct: 201 LK--RLCDN------KEIKEPTLMSCILSKSKGLPAAIVVLIKSLNSIKSMSAKQRKIFK 252
Query: 244 GIVLE-------IHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKVLLIFLIHTLYKYAE 296
++L +N I R Q E++ P T+ R + + I YKY+
Sbjct: 253 ELILSSKSLDEAAASKNAIDRSRYNPVLQLSYELLKPDETVKRPVIACFWHILDFYKYSG 312
Query: 297 CIIFFFLLLTALDKSKYRDGLRAVKK 322
C + L++ + + Y D +++V K
Sbjct: 313 CAYYRDLIVHWMLEG-YFDPVKSVDK 337
>sp|B4U143|MUTS2_STREM MutS2 protein OS=Streptococcus equi subsp. zooepidemicus (strain
MGCS10565) GN=mutS2 PE=3 SV=1
Length = 778
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 78 HYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEE 137
H + +++E+ E S + +V++ LK RAV + F + K KE E+ E
Sbjct: 509 HDVNRIIEQLEQQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHAKDKELEKAALEA 568
Query: 138 KILYKLRKARKKEERIVEGL---KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
+ + + A + E I+ L +++P E E H + L PE+ K+ +K K +
Sbjct: 569 REIVDM--ALAESESILSQLHEKAELKPHEIIEAKHRLKQLVPEQSLSQNKVLKKAKKW 625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,680,941
Number of Sequences: 539616
Number of extensions: 7366974
Number of successful extensions: 36802
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 35757
Number of HSP's gapped (non-prelim): 1026
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)