Query 011932
Match_columns 474
No_of_seqs 191 out of 602
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 9.5E-29 3.3E-33 210.9 13.9 91 174-266 1-91 (104)
2 1jo0_A Hypothetical protein HI 100.0 2.9E-28 1E-32 205.5 13.7 88 174-262 2-89 (98)
3 2lw1_A ABC transporter ATP-bin 34.9 52 0.0018 26.5 4.8 33 314-346 21-53 (89)
4 3ka5_A Ribosome-associated pro 30.1 66 0.0023 25.5 4.5 47 217-264 1-50 (65)
5 3sbx_A Putative uncharacterize 27.9 72 0.0025 29.3 5.0 35 181-216 129-163 (189)
6 3p04_A Uncharacterized BCR; SE 27.3 2.5E+02 0.0086 23.1 7.7 56 207-264 19-77 (87)
7 2pnv_A Small conductance calci 26.3 65 0.0022 23.8 3.6 26 315-340 16-41 (43)
8 2h9u_A DNA/RNA-binding protein 21.5 3.3E+02 0.011 22.9 7.5 67 191-257 6-75 (102)
9 1zme_C Proline utilization tra 21.3 96 0.0033 22.7 3.8 24 317-340 46-69 (70)
10 3k2t_A LMO2511 protein; lister 20.5 70 0.0024 24.6 2.9 46 218-264 2-50 (57)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=9.5e-29 Score=210.93 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHhcccCCCceeeeCCCCCcHHHHHHHHHHHHhcCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEEeCC
Q 011932 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253 (474)
Q Consensus 174 ~LT~EERk~LRKlAhkLKPVV~IGKrGVTDgVIeeIh~ALK~HELVKVKVkq~s~ed~keIAeeLAe~SGGeLVQViIG~ 253 (474)
|||++||++||++||+|+|+|+||++|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++||+ ||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~-IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV-IGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997 599
Q ss_pred EEEEEeCCCCCCC
Q 011932 254 TIIMYRGKNYAQP 266 (474)
Q Consensus 254 tIILYRGKNY~rP 266 (474)
++||||++. ..|
T Consensus 80 ~~VLYR~~~-~~~ 91 (104)
T 1rq8_A 80 MIVIYRESK-ENK 91 (104)
T ss_dssp EEEEEECCC-SCC
T ss_pred EEEEEeCCC-CCC
Confidence 999999886 444
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.95 E-value=2.9e-28 Score=205.47 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHhcccCCCceeeeCCCCCcHHHHHHHHHHHHhcCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEEeCC
Q 011932 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253 (474)
Q Consensus 174 ~LT~EERk~LRKlAhkLKPVV~IGKrGVTDgVIeeIh~ALK~HELVKVKVkq~s~ed~keIAeeLAe~SGGeLVQViIG~ 253 (474)
.||++||++||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~-IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT-IGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred EEEEEeCCC
Q 011932 254 TIIMYRGKN 262 (474)
Q Consensus 254 tIILYRGKN 262 (474)
++||||++.
T Consensus 81 ~~vLyR~~~ 89 (98)
T 1jo0_A 81 ILVLYRPSE 89 (98)
T ss_dssp EEEEECCCS
T ss_pred EEEEEccCC
Confidence 999999874
No 3
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.86 E-value=52 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=27.5
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHhccccccch
Q 011932 314 RDGLRAVKKYIPKLEQELELLRAQAETRSENRS 346 (474)
Q Consensus 314 ~qr~~alk~~I~~le~~ie~l~~~~~~~~~~~~ 346 (474)
...++.|-.-|.+||.+|..|.++|..+.-+.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~ 53 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence 345788999999999999999999998775543
No 4
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=30.11 E-value=66 Score=25.50 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEE---eCCEEEEEeCCCCC
Q 011932 217 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 264 (474)
Q Consensus 217 ELVKVKVkq~s~ed~keIAeeLAe~SGGeLVQVi---IG~tIILYRGKNY~ 264 (474)
++|+.+--...+..+++++.+++-. |-.+.=.+ -|.+-|+||+++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 4677777666777888888888776 44444243 38899999988654
No 5
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.85 E-value=72 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.4
Q ss_pred HHHHhcccCCCceeeeCCCCCcHHHHHHHHHHHHhc
Q 011932 181 FYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKH 216 (474)
Q Consensus 181 k~LRKlAhkLKPVV~IGKrGVTDgVIeeIh~ALK~H 216 (474)
--+.++|.+-+|++.+|.+|.++.+++-++ ++-..
T Consensus 129 lt~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~ 163 (189)
T 3sbx_A 129 WTEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADT 163 (189)
T ss_dssp HHHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHT
T ss_pred HHHHHhcccCCCEEEecCCccchHHHHHHH-HHHHC
Confidence 346778888899999999999999998886 44333
No 6
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=27.28 E-value=2.5e+02 Score=23.10 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCeeeEEecCCCHHHHHHHHHHHHH---HhCCeEEEEEeCCEEEEEeCCCCC
Q 011932 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYA 264 (474)
Q Consensus 207 eeIh~ALK~HELVKVKVkq~s~ed~keIAeeLAe---~SGGeLVQViIG~tIILYRGKNY~ 264 (474)
.+|-++|+....|=|.+..-+.++.+++.+.++- ..+|.+.. +|..+.|+=++|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeE
Confidence 5799999999999999999999999999998876 56999885 47778888888764
No 7
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.32 E-value=65 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=23.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHhcc
Q 011932 315 DGLRAVKKYIPKLEQELELLRAQAET 340 (474)
Q Consensus 315 qr~~alk~~I~~le~~ie~l~~~~~~ 340 (474)
.|.+.|...|..||..|+.|.+++..
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57889999999999999999998753
No 8
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=21.51 E-value=3.3e+02 Score=22.90 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=49.8
Q ss_pred CceeeeCCCCCcHHHHHHHHHHHHh-cCeeeEEecCCCHHHHHHHHHHHHHHh-CCeEEEE-EeCCEEEE
Q 011932 191 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLEI-HEENTIIM 257 (474)
Q Consensus 191 KPVV~IGKrGVTDgVIeeIh~ALK~-HELVKVKVkq~s~ed~keIAeeLAe~S-GGeLVQV-iIG~tIIL 257 (474)
...|.||+.|+..-|...+...|.. +.=|.|+-.+..-...=.+|+.|.+.. +|.-||. .+|...+-
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~ 75 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIE 75 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEe
Confidence 4789999999987777777455654 667778877877777788999999999 6755453 35655553
No 9
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.30 E-value=96 Score=22.74 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhcc
Q 011932 317 LRAVKKYIPKLEQELELLRAQAET 340 (474)
Q Consensus 317 ~~alk~~I~~le~~ie~l~~~~~~ 340 (474)
++.|...|..||+.|+.|+..+++
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777888888888888877653
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=20.51 E-value=70 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=28.1
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEE---eCCEEEEEeCCCCC
Q 011932 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 264 (474)
Q Consensus 218 LVKVKVkq~s~ed~keIAeeLAe~SGGeLVQVi---IG~tIILYRGKNY~ 264 (474)
+|+.+-....+..+++++.+++-.-.--+| .+ -|.+-|+||.++..
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCCC
Confidence 344444444555677888888766444444 43 38899999988643
Done!