Query 011933
Match_columns 474
No_of_seqs 281 out of 735
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2480 3-hydroxy-3-methylglut 100.0 3E-146 7E-151 1135.6 34.6 447 24-471 42-511 (602)
2 cd00643 HMG-CoA_reductase_clas 100.0 5E-110 1E-114 857.0 32.0 332 137-472 1-336 (403)
3 TIGR00920 2A060605 3-hydroxy-3 100.0 5E-109 1E-113 901.8 32.1 340 133-472 458-800 (886)
4 TIGR00533 HMG_CoA_R_NADP 3-hyd 100.0 2E-106 4E-111 830.6 32.1 333 134-472 1-340 (402)
5 PF00368 HMG-CoA_red: Hydroxym 100.0 1.2E-97 3E-102 761.4 18.0 309 161-472 1-311 (373)
6 COG1257 HMG1 Hydroxymethylglut 100.0 1.8E-96 4E-101 758.2 25.4 330 139-471 2-335 (436)
7 TIGR00532 HMG_CoA_R_NAD hydrox 100.0 2.1E-85 4.5E-90 674.0 24.0 303 144-472 3-333 (393)
8 cd00644 HMG-CoA_reductase_clas 100.0 4E-83 8.7E-88 661.1 23.2 287 159-472 2-317 (417)
9 cd00365 HMG-CoA_reductase Hydr 100.0 4E-81 8.7E-86 639.6 27.6 300 151-472 1-316 (376)
10 COG1257 HMG1 Hydroxymethylglut 89.7 0.097 2.1E-06 56.3 -0.1 26 419-445 273-298 (436)
11 PF14150 YesK: YesK-like prote 74.1 3.3 7.1E-05 35.5 3.0 56 36-95 2-58 (81)
12 PRK09509 fieF ferrous iron eff 67.6 19 0.00041 36.4 7.4 72 283-354 213-285 (299)
13 TIGR01297 CDF cation diffusion 59.2 61 0.0013 31.5 9.0 67 283-349 192-259 (268)
14 PF14715 FixP_N: N-terminal do 57.6 12 0.00026 29.4 3.0 25 31-55 18-42 (51)
15 COG0053 MMT1 Predicted Co/Zn/C 53.8 58 0.0012 33.6 8.1 80 282-361 214-293 (304)
16 PF14012 DUF4229: Protein of u 52.5 21 0.00045 29.4 3.8 30 33-62 30-59 (69)
17 PF01545 Cation_efflux: Cation 45.1 86 0.0019 30.6 7.5 66 285-350 207-273 (284)
18 COG1862 YajC Preprotein transl 43.1 19 0.00041 31.7 2.3 27 34-60 6-32 (97)
19 PF11947 DUF3464: Protein of u 36.7 82 0.0018 30.0 5.6 58 26-97 46-117 (153)
20 TIGR00782 ccoP cytochrome c ox 33.7 37 0.00079 34.4 3.0 25 31-55 24-48 (285)
21 PRK14645 hypothetical protein; 32.7 3.4E+02 0.0074 25.6 9.1 97 283-379 6-108 (154)
22 PF01578 Cytochrom_C_asm: Cyto 31.2 92 0.002 29.6 5.1 50 39-99 162-211 (214)
23 PF13858 DUF4199: Protein of u 30.8 1.6E+02 0.0035 26.6 6.4 48 39-90 34-84 (163)
24 PF07045 DUF1330: Protein of u 30.3 50 0.0011 26.2 2.7 43 237-282 17-59 (65)
25 PF02114 Phosducin: Phosducin; 30.1 1.7E+02 0.0037 29.8 7.1 101 270-381 98-215 (265)
26 PRK13108 prolipoprotein diacyl 29.5 1E+02 0.0022 34.0 5.7 43 46-88 228-272 (460)
27 TIGR03063 srtB_target sortase 28.2 59 0.0013 23.1 2.4 26 25-56 2-27 (29)
28 COG5548 Small integral membran 27.4 85 0.0018 28.1 3.8 48 36-99 30-77 (105)
29 PRK13454 F0F1 ATP synthase sub 26.5 60 0.0013 30.9 3.0 21 36-56 30-50 (181)
30 PF09551 Spore_II_R: Stage II 26.4 1E+02 0.0023 28.6 4.4 58 267-328 38-112 (130)
31 PF09580 Spore_YhcN_YlaJ: Spor 26.4 3.9E+02 0.0085 24.6 8.3 68 285-356 74-141 (177)
32 PF07074 TRAP-gamma: Transloco 26.0 43 0.00093 32.4 1.9 49 27-82 117-167 (170)
33 TIGR02837 spore_II_R stage II 25.3 1E+02 0.0023 29.8 4.3 56 269-328 75-147 (168)
34 PRK14646 hypothetical protein; 23.5 5.8E+02 0.012 24.0 8.8 94 287-380 8-107 (155)
35 PF11360 DUF3110: Protein of u 23.4 1.1E+02 0.0024 26.3 3.7 34 245-281 11-44 (86)
36 PF06129 Chordopox_G3: Chordop 22.9 66 0.0014 29.1 2.4 21 36-56 2-22 (109)
37 PRK14641 hypothetical protein; 22.8 7E+02 0.015 24.1 9.4 95 287-381 12-112 (173)
38 PRK03557 zinc transporter ZitB 22.7 7.3E+02 0.016 25.4 10.1 73 285-360 222-296 (312)
39 TIGR02206 intg_mem_TP0381 cons 22.6 1.6E+02 0.0035 29.0 5.2 41 60-102 63-109 (222)
40 PF07293 DUF1450: Protein of u 21.6 2.2E+02 0.0047 24.3 5.0 59 328-392 11-70 (78)
41 cd02987 Phd_like_Phd Phosducin 20.4 5.3E+02 0.011 24.3 8.0 90 274-371 39-145 (175)
42 TIGR00739 yajC preprotein tran 20.2 75 0.0016 27.0 2.0 22 37-58 3-24 (84)
43 PRK05886 yajC preprotein trans 20.1 94 0.002 28.0 2.7 21 40-60 7-27 (109)
No 1
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-146 Score=1135.64 Aligned_cols=447 Identities=63% Similarity=0.965 Sum_probs=419.9
Q ss_pred CCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH--hhhccCCCccccchhHHHHHHHH-HHHHHHHHhhcCccccccc
Q 011933 24 TPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWR--EKIRNSTPLHVVTLSEIAAIVSL-IASFIYLLGFFGIDFVQSF 100 (474)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (474)
..++++.+|||+|+++..|+.|||+++|+++++|+ +|+|.|+|||++++++..+.... +++++|+++|++|+++|++
T Consensus 42 ~~~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (602)
T KOG2480|consen 42 VCKASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSV 121 (602)
T ss_pred cchhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhc
Confidence 45689999999999999999999999999999999 99999999999999999998888 9999999999999999999
Q ss_pred ccCCCCccccccc----CCCCC-C-C---CCCCCcc--------cCcCCCCCHHHHHHHHHcCCCCcccccccCCChhHH
Q 011933 101 ISRATPEAWDLEE----DDSDI-I-S---RPPAPIS--------ITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRA 163 (474)
Q Consensus 101 ~~~~~~~~~~~~~----~~~~~-~-~---~~~~~~~--------~~~~~~~~~~ei~~~v~~g~~~~~~les~l~d~~ra 163 (474)
+++...+.|...+ .+++. . + .|-.+.. -...-+.+|+||+++|..|++|+|+||++|+|++||
T Consensus 122 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~l~~~~~~~~~g~~~~~~~d~Eiv~lv~~G~~p~y~lEs~l~d~~Ra 201 (602)
T KOG2480|consen 122 ISDDDVESWVTDRTILCVSGRLVTFPSIPKPIRPLLEILNLFPSGQEVKSLSDEEIVQLVIAGKIPLYALESKLGDAERA 201 (602)
T ss_pred cccccccccccccccccCCCcccccCCCCCCccchhhhcccCccccccccCChHHHHHHhhcCcccceeccccccchhhh
Confidence 9888777774322 22211 0 1 1111110 111245689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC---CCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhhHHHhhhhh
Q 011933 164 AAIRREALQKMTGRSLQ---GLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGC 240 (474)
Q Consensus 164 ~~~RR~~l~~~tg~sl~---~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATtEgsLVASanRGa 240 (474)
+.+||++|.+.++.+.. .||+++|||+.+.|+||||+|||+||||||||||+|||++|||||||||||||||+||||
T Consensus 202 v~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~VPMATTEGaLVAStnRGc 281 (602)
T KOG2480|consen 202 VSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYYVPMATTEGALVASTNRGC 281 (602)
T ss_pred HHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEEeeeccccchhhHhhccch
Confidence 99999999999998876 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEee
Q 011933 241 KAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCT 320 (474)
Q Consensus 241 Kai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~d 320 (474)
|+|+.+||+++++.+|+|||+|+++|+++++|.++|.||+.||||+.|+++||++|||+|||+|++.++|+++|+||...
T Consensus 282 KaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq~i~~~iaG~~lyiRF~~~ 361 (602)
T KOG2480|consen 282 KAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQSIHTTIAGRNLYIRFCTS 361 (602)
T ss_pred hheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhheeeEEeecceeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEeeeechHHHHHHHHcCCHHHHHh
Q 011933 321 TGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVE 400 (474)
Q Consensus 321 TgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~VvaEa~i~~eVv~kiLkts~~alvd 400 (474)
||||||||||+|++|+++.+|.++||+|++++||||||+||||+|+||||||||+|+||++||.++|+++|||++++|+|
T Consensus 362 TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~Ip~~vvr~VLkt~v~aLve 441 (602)
T KOG2480|consen 362 TGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATIPGEVVRKVLKTTVEALVE 441 (602)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEeccHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeeeeEEecCCCcEEEEEEecceee
Q 011933 401 LNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEV 471 (474)
Q Consensus 401 ln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~mE~~~dg~dL~~SvtmPsleV 471 (474)
+|..||+.||||||++||||+|++|+|+|||||||||+||+||||||+|.||...| ||||+|||||||||
T Consensus 442 ln~~KnliGSAmAGSvGGfNAHAANiVtAvFlAtGQDpAQnVeSSnCiT~Me~~~d-~DL~iSvtMPsIEV 511 (602)
T KOG2480|consen 442 LNILKNLIGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLMEASTD-GDLYISVTMPSIEV 511 (602)
T ss_pred HHhhhhhhhhhhhccccCcchhHHHHHHHHHHHhCCChHHhcccchhhhhheeccC-CCeEEEEecccEEE
Confidence 99999999999999999999999999999999999999999999999999998644 79999999999998
No 2
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=4.6e-110 Score=857.00 Aligned_cols=332 Identities=61% Similarity=0.933 Sum_probs=324.2
Q ss_pred HHHHHHHHcCCCCcccccccCCChhHHHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEE
Q 011933 137 EDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLL 216 (474)
Q Consensus 137 ~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlI 216 (474)
+||++++.+|++++|+||+.+.|.+|++.+||+++++.+|.+++++|++++||+++.++||||+||++|||+||||||+|
T Consensus 1 ~ei~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~~~~~~~~~l~~~~~~~~d~~~~~~~~iEN~IG~~~vPlGvAgpl~I 80 (403)
T cd00643 1 EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRNIENVIGYVQVPVGVAGPLLI 80 (403)
T ss_pred ChHHHhhhcCCCCchhccccccChHHHHHHHHHHHHhccccccccCCCCCcCHHHHhccccccceeeEeeceEEecceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----CeEEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHH
Q 011933 217 D----GFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVF 292 (474)
Q Consensus 217 n----G~~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~va 292 (474)
| |++|+|||||||||||||+|||||+++.+||+++.+++|+|||+|+|+|+++.+|.++++|+++ |+++|+++|
T Consensus 81 nG~~a~~~~~VPmATtEgslVAS~srGak~i~~~GG~~~~v~~~~Mtrap~~~~~~~~~a~~~~~wi~~--~~~~i~~~a 158 (403)
T cd00643 81 NGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTRVLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVA 158 (403)
T ss_pred ecccCCcEEEEEeeechhHHHHHHHHHHHHHHhcCCceEEEcCCcceeccEEEECchhhHHHHHHHHHH--HHHHHHHHH
Confidence 9 7899999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred hhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCC
Q 011933 293 NRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGR 372 (474)
Q Consensus 293 n~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GR 372 (474)
|++||||||++|++++.|+++||||.|+||||||||||||++|++|+||++++|++.+++||||||+||||+|+||++||
T Consensus 159 ~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK~sa~n~~~gR 238 (403)
T cd00643 159 ESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238 (403)
T ss_pred HhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ceEEEeeeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeeeeE
Q 011933 373 GKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMME 452 (474)
Q Consensus 373 Gk~VvaEa~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~mE 452 (474)
||+|+||+.||+++++++|+|++++++|+|..|+++||+||| .+|||+|+||+|+||||||||||||++|||+|+|+||
T Consensus 239 Gk~V~Ae~~I~~~v~~~il~~s~~a~~~~~~~K~~igs~mag-~~g~Nah~aNgi~Av~iATGQD~A~v~ess~~lT~~e 317 (403)
T cd00643 239 GKSVVAEATIPREVVKEVLKTTPEALVEVNIAKNLIGSAMAG-SGGFNAHAANIVAAIFIATGQDAAQVVESSNCITTME 317 (403)
T ss_pred ceEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHHHHhhc-cccccccHHHHHHHHHhhcCCcHHHHHHHhccceeEE
Confidence 999999999999999999999999999999899999999999 6679999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEEecceeec
Q 011933 453 AINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 453 ~~~dg~dL~~SvtmPsleV~ 472 (474)
.+++ +|||+|||||||+|.
T Consensus 318 ~~~~-~~L~~svtlPsL~VG 336 (403)
T cd00643 318 LTAD-GDLYISVTMPSLEVG 336 (403)
T ss_pred EcCC-CeEEEEEEeCCceEE
Confidence 9644 689999999999984
No 3
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=100.00 E-value=4.6e-109 Score=901.83 Aligned_cols=340 Identities=59% Similarity=0.969 Sum_probs=331.0
Q ss_pred CCCHHHHHHHHHcCCCCcccccccCCChhHHHHHHHHHHHHHhC--CCCCCCCCCCCChhhhhccccccceEEeeeceee
Q 011933 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTG--RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (474)
Q Consensus 133 ~~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg--~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGV 210 (474)
..+|+||++++.+|+++.|+||+.++|++||+++||++|++.+| .++++||+++|||+++.++||||+|||+|||+||
T Consensus 458 ~l~~~ei~~~~~~g~~~~~~le~~~~~~~~av~~Rr~~l~~~~~~~~~l~~l~~~~~d~~~v~~~~iEN~IG~~~vPvGV 537 (886)
T TIGR00920 458 ALSDAEVISLVNAKHIPAYKLETVLDNPERGVAIRRQILSKKLPMPDALDVLPYKNYDYSKVMGACCENVIGYMPIPVGV 537 (886)
T ss_pred cCCHHHHHHHHhcCCCCccchhhhccCHHHHHHHHHHHHHhhcCCchhhhcCCcCCcCHHHHHhcccceeeeeeecceee
Confidence 45899999999999999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 011933 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (474)
Q Consensus 211 AGPLlInG~~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~ 290 (474)
||||+|||++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|++++++++++++
T Consensus 538 AGpL~InG~~y~VPMATtEgsLVAS~nRGaK~i~~~GG~~a~v~~d~MtRapvv~f~~~~~A~~~~~wi~~~e~~~~ik~ 617 (886)
T TIGR00920 538 AGPLLLDGKEYQVPMATTEGCLVASTNRGCRALMLGGGVRSRVLADGMTRGPVVRLPSACRAAEAKAWLEVPENFAVIKD 617 (886)
T ss_pred eccEEECCeEEEEeeeeccchHHHHHhHHHHHHHhcCCeEEEEccCceeeeeeEEeCcHHhHHHHHHHHhChHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeee
Q 011933 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIE 370 (474)
Q Consensus 291 van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~ 370 (474)
++++++|||||++|++++.|+++|+||.|+||||||||||||++|++|++|+++||++++++||||||+||||+|+|||+
T Consensus 618 ~~~StsR~g~L~~I~~~i~g~~v~lrf~~~TGDAMG~NMVn~atEa~~~~i~~~~~~~~~~sIsgN~ctDKK~sAiN~i~ 697 (886)
T TIGR00920 618 AFDSTSRFARLKKIHIAMAGRNLYIRFQAKTGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIE 697 (886)
T ss_pred hhhccCcccceeeEEEEeeCCEEEEEEEEEcCchhcchHHHHHHHHHHHHHHHhCCCCeEEEEecccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCceEEEeeeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeee
Q 011933 371 GRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITM 450 (474)
Q Consensus 371 GRGk~VvaEa~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~ 450 (474)
||||+|+||+.||+++++++|+|++++++|+|..||++||++||++||||+|+||||+||||||||||||++|||+|+|.
T Consensus 698 gRGk~Vvae~~Ip~evv~~ilkts~~alvd~~~~KnliGsa~aGs~gg~Nah~aNgIaAifIATGQD~Ahv~eSs~~~t~ 777 (886)
T TIGR00920 698 GRGKSVVCEATIPAKIVRSVLKTSAEALVDVNINKNLIGSAMAGSIGGFNAHAANIVTAIYIATGQDAAQNVGSSNCMTL 777 (886)
T ss_pred cCCcEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHhhhhccccccccCcHHHHHHHHHhhcCCcHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec-CCCcEEEEEEecceeec
Q 011933 451 MEAIN-DGKDLHISVTMPSIEVI 472 (474)
Q Consensus 451 mE~~~-dg~dL~~SvtmPsleV~ 472 (474)
||... +++|||+|||||||+|.
T Consensus 778 me~~~~~~~~L~~SvtlPsL~VG 800 (886)
T TIGR00920 778 MEAWGPTGEDLYISCTMPSIEIG 800 (886)
T ss_pred eeeeeccCCeEEEEEEcCCceEE
Confidence 99863 34689999999999984
No 4
>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP). This model represents archaeal examples of the enzyme hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34) and the catalytic domain of eukaryotic examples, which also contain a hydrophobic N-terminal domain. This enzyme synthesizes mevalonate, a precursor of isopentenyl pyrophosphate (IPP), a building block for the synthesis of cholesterol, isoprenoids, and other molecules. A related hydroxymethylglutaryl-CoA reductase, typified by an example from Pseudomonas mevalonii, is NAD-dependent and catabolic.
Probab=100.00 E-value=1.9e-106 Score=830.62 Aligned_cols=333 Identities=50% Similarity=0.791 Sum_probs=321.5
Q ss_pred CCHHHHHHHHHcCCCCcccccccCCChhHHHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecc
Q 011933 134 AQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGP 213 (474)
Q Consensus 134 ~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGP 213 (474)
++|+||++++.+|+++.|+||+.+ +++||+++||++|++.++.++++|+.+.+|++++.++||||+||+++||+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~R~~~l~~~~~~~~~~l~~~~~d~~~~~~~~iEN~IG~~~vPlGvagp 79 (402)
T TIGR00533 1 MENNEILELVLNGKIKLYQLEKKL-GTTRAVEIRRKFIEKLAGLESEHLPNYSIDYERAFGANIENVIGYMQIPLGVAGP 79 (402)
T ss_pred CChHHHHHHHhcCCCCchhhhhhc-CcHHHHHHHHHHHHHhcCCChhhccccCCCHHHHhhcCceeccceeeeceeEecc
Confidence 479999999999999999999977 5899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcC----eEEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHH
Q 011933 214 LLLDG----FEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289 (474)
Q Consensus 214 LlInG----~~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~ 289 (474)
|+||| ++|+|||||||||||||+|||||+++++||+++++++++|+|||+|+|+++.|+.++.+|+++ |+++|+
T Consensus 80 l~InG~~a~~~~~VPmAT~E~slVAS~srGak~i~~~GG~~~~v~~~~M~r~~~~~~~~~~da~~~~~~i~~--~~~~i~ 157 (402)
T TIGR00533 80 LKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAGGGATVRVTKDGMTRAPVVRTPSVVRAGACRIWIDE--NQNAIK 157 (402)
T ss_pred EEEcCcccCceEEEeeeechhhHHHHHhHHHHHHHhcCCeEEEECCCcEEccEEEEeCChhhHHHHHHHHHH--HHHHHH
Confidence 99999 899999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred HHHhhcCCCcceeeEEE-EecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCC--CCeEEEEecCCCCCCcccee
Q 011933 290 VVFNRSSRFARLQHIQC-SIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFP--DMDVIGISGNFCSDKKPAAV 366 (474)
Q Consensus 290 ~van~tSR~g~L~~I~~-~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p--~~~visIsgN~ctDKK~sA~ 366 (474)
++||+++|||||++|++ .+.|+++||||.|+|||||||||||+++|++|+||++++| ++++++||||||+||||+|+
T Consensus 158 ~~a~~tsr~g~l~~i~~~~~~g~~v~l~f~~~tgDAMG~Nmvn~a~e~v~~~i~~~~~~~~~~~~~I~sN~~tdkk~sa~ 237 (402)
T TIGR00533 158 EAAESTTRHGKLQKIQPICLAGDLLYPRFVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAI 237 (402)
T ss_pred HHHHhhCCCCceeeeEEEeccCCEEEEEEEEEccccccchHHHHHHHHHHHHHHHHcCCCCceEEEEeccCccchhhhhh
Confidence 99999999999999998 6789999999999999999999999999999999999886 55789999999999999999
Q ss_pred eeeeCCceEEEeeeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccc
Q 011933 367 NWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSH 446 (474)
Q Consensus 367 n~i~GRGk~VvaEa~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~ 446 (474)
||++||||+|+||+.||.+|+++++++++++++|++..||+.||+++|++| ||||+||||+||||||||||||++|||+
T Consensus 238 n~~~gRGk~V~A~~~Ip~~v~~~il~~s~~a~~d~~rak~~~gs~~tg~~g-~N~~iaNgI~Av~lATGqD~A~v~ess~ 316 (402)
T TIGR00533 238 NLIEGRGKSIVAEATIPGDVVNKVLKTTVSALVEVNIAKNLIGSAMAGSMG-FNAHYANIIGAIFLATGQDEAHIVEGSL 316 (402)
T ss_pred cccccCCeEEEEEEEECHHHHHHHHCCCHHHHHhHHHHhhhHHHHHhcCCc-cCCcHHHHHHHHHhhcCCcHHHHHHhcc
Confidence 999999999999999999999999999999999988889999999999997 9999999999999999999999999999
Q ss_pred eeeeeEEecCCCcEEEEEEecceeec
Q 011933 447 CITMMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 447 ~iT~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
|+|+||. .+ ++||+|||||||+|.
T Consensus 317 ~lt~~e~-~~-~~L~~sitlPsL~VG 340 (402)
T TIGR00533 317 GITLAEE-VD-GDLYFSVSLPDVPVG 340 (402)
T ss_pred ccceEEE-cC-CEEEEEEEcCCceEE
Confidence 9999997 44 589999999999984
No 5
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=100.00 E-value=1.2e-97 Score=761.39 Aligned_cols=309 Identities=45% Similarity=0.672 Sum_probs=286.7
Q ss_pred hHHHHHHHHHHHHHhCCC--CCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhhHHHhhh
Q 011933 161 RRAAAIRREALQKMTGRS--LQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNR 238 (474)
Q Consensus 161 ~ra~~~RR~~l~~~tg~s--l~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATtEgsLVASanR 238 (474)
+|++++||++|++.++.+ +++++..++|+++++++||||+||+++||+||||||+|||++|+|||||||||||||+||
T Consensus 1 ~ka~~~Rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lPlGvagpl~InG~~y~VPmATeE~svVAsasr 80 (373)
T PF00368_consen 1 KKAIEERREFLEELTGTSEQLEHLPNYSLDPEEVADQMIENVIGYVQLPLGVAGPLLINGKDYYVPMATEEPSVVASASR 80 (373)
T ss_dssp -CHHHHHHHHHHTTSSCCCHHHHCTTTTS-HHTHHHHHSSSEEEEEEEEEEEEEEEEETTEEEEEEEE-SSTTHHHHHHH
T ss_pred CchHHHHHHHHHhhhCcchhHHhCCccCCCHHHHhccCCceeeeEEEEeeEEEccEEEcCEEEEeeeceechhHHHhhhh
Confidence 468999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEE
Q 011933 239 GCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFC 318 (474)
Q Consensus 239 GaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~ 318 (474)
|||+++.+||+++.+.++.|+|||+|.|++..|+.++++|+++ |+++|+++||.+||||||++|++++.|+++|+||.
T Consensus 81 Gak~i~~sGG~~t~v~~~~m~rq~~~~f~~~~~a~~~~~~i~~--~~~~l~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~ 158 (373)
T PF00368_consen 81 GAKAINESGGFTTSVLEDGMTRQPVFVFDDVEDAAAFKQWIEE--NFEELKEIANSTSRGGGLRDIEVRIVGRFVHLRFH 158 (373)
T ss_dssp HHHHHHHTTSBEEEEEEEEEEEEEEEE-SSHSHHHHHHHHHHH--THHHHHHHHHHHCCTEEEEEEEEEECSTEEEEEEE
T ss_pred HHHHHhhcCCeEEEEcCCceeeeeEEEeCCHhhHHHHHHHHHH--HHHHHHHhhhhcCCceeeeEEEEEecCCEEEEEEE
Confidence 9999999999999999999999999999999999999999995 99999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEeeeechHHHHHHHHcCCHHHH
Q 011933 319 CTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATL 398 (474)
Q Consensus 319 ~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~VvaEa~i~~eVv~kiLkts~~al 398 (474)
|||||||||||||+++|++|+||++++++..+++|+||||+||||++.||++||||+|.||+.||.++++++++++++++
T Consensus 159 ~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK~s~~n~~~grG~~v~A~~~ip~~~l~~~~~~~~~~v 238 (373)
T PF00368_consen 159 YDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKKPSAINWIEGRGKLVTAEATIPVEVLARVLGTTGEQV 238 (373)
T ss_dssp EEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS--HHHHHH--ECEEEEEEEEEHHHHHCSSSSHHHHH
T ss_pred EEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhhhhhhheeccCCEEEEEEEEECHHHHhhhcCCCHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeeeeEEecCCCcEEEEEEecceeec
Q 011933 399 VELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 399 vdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
++++..+++.|+.++|+. |||||+||+|+|||||||||||++.|||||++.+|...+++|||+|+|||||+|.
T Consensus 239 ~~i~~a~~~a~~~~~ra~-t~Nkg~~Ngi~Av~lATGqD~raV~~ssha~a~~~~~~~~~~L~~sitlPsL~VG 311 (373)
T PF00368_consen 239 AEINQASNLAGSDPYRAV-THNKGIMNGIAAVFLATGQDWRAVEESSHAYASMEGQYDGGDLYGSITLPSLPVG 311 (373)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHCTTTSSSTTTEEEEEEEEEEE---
T ss_pred HHHHHHHHHHhhhHhhcc-ccCCChHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCceEE
Confidence 999999999999999999 5999999999999999999999999999999999998776799999999999873
No 6
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=100.00 E-value=1.8e-96 Score=758.18 Aligned_cols=330 Identities=47% Similarity=0.649 Sum_probs=318.6
Q ss_pred HHHHHHcCCCCcccccccCCChhHHHHHHHHHHHHHhCCCCCCCCCCCCChh---hhhccccccceEEeeeceeeecceE
Q 011933 139 VVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYD---SILGQCCEMPVGYVQIPVGIAGPLL 215 (474)
Q Consensus 139 i~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~---~i~g~~iEN~IG~v~IPvGVAGPLl 215 (474)
+++++..|++++|++|+..+ .++++.+||++|++.++++++++.....|++ +++++||||+||++|+|+||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~-~~~a~~~Rr~~l~~~~~l~~~~~~~~~~d~~~~~~~~~~~iENvIG~~~lPlGia~~l~ 80 (436)
T COG1257 2 VVQKVLAGEIKLSELEKFYK-ANKAVEERRQALERFTGLSLEEIGSLSIDGSLPIDVANRNIENVIGTVQLPLGIAGPLL 80 (436)
T ss_pred hhhhhhcccchhhhhhhhcc-ccccHHHHHHHHHHHhCCChhhhhhhccCcchhHHHHHHhhhhhhceeeeecccccceE
Confidence 67899999999999999874 6689999999999999999999888776666 9999999999999999999999999
Q ss_pred EcCeEEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhc
Q 011933 216 LDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRS 295 (474)
Q Consensus 216 InG~~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~t 295 (474)
|||++|+|||||||||||||+|||||+|+.+||+++.+++|+|||||+|+|.+..++.+++.|++.+++++.++++++++
T Consensus 81 InG~~Y~iPmATtEgalVAs~~rgaK~i~~~GG~~~~~~~~~Mtr~~v~~~~~~~~a~~~~~w~~~~e~~e~~k~~~~s~ 160 (436)
T COG1257 81 INGKEYYIPMATTEGALVASASRGAKLITASGGATARVTEDGMTRQPVFRFVSLPEAAKFAIWVKKKEIIELAKEAAPST 160 (436)
T ss_pred EcCceeEEeeeccchHHHHHHHhHHHHHHhcCCcEEEEeccccccccEEecCchHHHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhC-CCCeEEEEecCCCCCCccceeeeeeCCce
Q 011933 296 SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDF-PDMDVIGISGNFCSDKKPAAVNWIEGRGK 374 (474)
Q Consensus 296 SR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~-p~~~visIsgN~ctDKK~sA~n~i~GRGk 374 (474)
+||+|+++|++.+.|+++|+||.+||||||||||||+++|+++++|+++| ++..+++||||||+||||+|.||++||||
T Consensus 161 ~~~~kl~~i~~~~~g~~l~l~~~~dT~DAMGmNMvn~~~E~v~~~i~~~~~~~~~~~~issN~ctdkk~~a~~~~~grgk 240 (436)
T COG1257 161 GRGGKLIHIEPFVEGNLLYLRFYVDTGDAMGMNMVNIATEAVAPFIEEETFGGAVLLAISSNLCTDKKPAAINSIEGRGK 240 (436)
T ss_pred CCcceeeeeeeeccCcEEEEEEEEecchhhhhHHHHHHHHHHHHHHHHhccCCceEEEEecccccccchhheEEEEeccc
Confidence 99999999999999999999999999999999999999999999999996 78888999999999999999999999999
Q ss_pred EEEeeeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeeeeEEe
Q 011933 375 SVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAI 454 (474)
Q Consensus 375 ~VvaEa~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~mE~~ 454 (474)
+|++|+.+|+|+|++|+++++++++|+|..||+.||+|+|+.| ||+|.+|.+.|+|+|||||.||++|+|.|+|+||..
T Consensus 241 ~v~ae~~~~~evv~~il~at~~a~~d~~rakt~~ggamnG~~g-fna~~aN~~~Ai~~a~gqdaA~~~e~s~~~t~~~~~ 319 (436)
T COG1257 241 TVVAEATIPEEVVKKILKATPEAIVDVNRAKTLNGGAMNGIDG-FNAHTANDVRAIEAATGQDAAQVGEYSPLITWMEDQ 319 (436)
T ss_pred eeeccccchHHHHHHHHhcCHHHHhhHHHHHhhhhhhhhhHHH-HHHHHhhHHHHHHHHhCccHHhhcccCCceEEEEec
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999975
Q ss_pred cCCCcEEEEEEecceee
Q 011933 455 NDGKDLHISVTMPSIEV 471 (474)
Q Consensus 455 ~dg~dL~~SvtmPsleV 471 (474)
++ +|||+||||||++|
T Consensus 320 ~~-~~L~~svtlP~~~v 335 (436)
T COG1257 320 RD-GDLYGSVTLPSLVV 335 (436)
T ss_pred CC-CcEEEEEEecccee
Confidence 54 69999999999986
No 7
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative. Most known examples of hydroxymethylglutaryl-CoA reductase are NADP-dependent (EC 1.1.1.34) from eukaryotes and archaea, involved in the biosynthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA. This model, in contrast, is built from the two examples in completed genomes of sequences closely related to the degradative, NAD-dependent hydroxymethylglutaryl-CoA reductase of Pseudomonas mevalonii, a bacterium that can use mevalonate as its sole carbon source.
Probab=100.00 E-value=2.1e-85 Score=674.01 Aligned_cols=303 Identities=20% Similarity=0.223 Sum_probs=273.5
Q ss_pred HcCCCCcccccccCCChhH-HHHHHHHHHHHHhCCC---CCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCe
Q 011933 144 IDGSIPSYALESKLGDCRR-AAAIRREALQKMTGRS---LQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGF 219 (474)
Q Consensus 144 ~~g~~~~~~les~l~d~~r-a~~~RR~~l~~~tg~s---l~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~ 219 (474)
.+|++++|++|. +.+|++ ++++||++|++.++++ ++.|+...+|++...++||||+||+++||+||||||+|||+
T Consensus 3 ~~~~~~~~~~~~-~~~f~~~s~~eR~~~l~~~~~l~~~~~~~l~~~~l~~~~a~~~~iEN~Ig~~~vPlGvAg~l~InG~ 81 (393)
T TIGR00532 3 KEGKIRFAELSK-IFGFYHKSVEEKLKEIAEFAELSDEEVKAFFSNGANEDFAFDRMIENVIGTFEFPIGIAKNFKIDGK 81 (393)
T ss_pred cccccchhhhcc-ccChhhcCHHHHHHHHHHhcCCCHHHHHHHhhCCCCHHHHhccCcccccceeeeceeEeccEEECCe
Confidence 469999999976 668666 9999999999999955 44677777898766699999999999999999999999999
Q ss_pred EEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeece-EEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC--
Q 011933 220 EYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAP-IVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-- 296 (474)
Q Consensus 220 ~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRap-v~~f~~~~~A~~l~~wle~p~n~~~L~~van~tS-- 296 (474)
+|+|||||||||||||+|||||+++.+||+++.+.+++|+||+ ++.|++..++. ..|++ ++++|++++|+++
T Consensus 82 ~y~VPMATeE~svVAs~srGak~~~~~GG~~~~v~~~~M~gqi~~~~~~~~~~a~--~~~~~---~~~~i~~~a~~~~~~ 156 (393)
T TIGR00532 82 DYLIPIAIEEPSVVAAANFAAKIAEEADGFTSDGEGLGIIGQIQQIKIKNEKAAK--FEFLD---LGDEIIERAEECDPM 156 (393)
T ss_pred EEEEEeeeccccHHHHHHHHHHHHHhcCCeEEEEcCCceEEEEEEEecCCHHHHH--HHHHH---HHHHHHHHHHHhCHH
Confidence 9999999999999999999999999999999999999999887 66777654432 44554 8999999999986
Q ss_pred ---CCcceeeEEEE----ecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeee
Q 011933 297 ---RFARLQHIQCS----IAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWI 369 (474)
Q Consensus 297 ---R~g~L~~I~~~----i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i 369 (474)
|||++++|+++ +.|+++|+||.|||||||||||||+++|++|++|++++|+..+++|+||||+|||+
T Consensus 157 ~~~rggg~~~i~~r~~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~Eav~~~i~~~~~~~~~~~IlsN~~~dk~~------ 230 (393)
T TIGR00532 157 LNNLGGGCKDIEARVIDIIEGGILILHIIVDTCDAMGANALNSIAEKVAEFIELEFGGECVLKIISNDAAEFTA------ 230 (393)
T ss_pred HHhhcCCeEEEEEEeeecccCCEEEEEEEEecccccccHHHHHHHHHHHHHHHHhCCCceEEEEecCccccceE------
Confidence 99999999986 56899999999999999999999999999999999999887779999999999977
Q ss_pred eCCceEEEeeeechHH----HHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCcccccccc
Q 011933 370 EGRGKSVVCEATIKEE----VVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESS 445 (474)
Q Consensus 370 ~GRGk~VvaEa~i~~e----Vv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS 445 (474)
++|||.+++|..++.+ +++|++++++++.+| +||++| ||||+||||+|||||||||||++.|||
T Consensus 231 ~arg~~~~a~~~i~~~~~~~v~~ki~~~s~~a~~d--~~ra~t----------~Nkgi~NgI~Av~lATGqD~raVea~~ 298 (393)
T TIGR00532 231 KARAKADFDHDLIGGEDSWNLAEGIELASAFAAAD--EERAAT----------HNKGIMNGISALCIATFNDFRAIEAGA 298 (393)
T ss_pred EEEEEEEhheeecCchhhHHHHHHHHHHHHHhhcC--hHhhhc----------ccchHHHHHHHHHhhcCCcHHHHHHhh
Confidence 7799999999999877 899999999999998 899887 999999999999999999998888888
Q ss_pred c----------eeeeeEEecCCCcEEEEEEecceeec
Q 011933 446 H----------CITMMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 446 ~----------~iT~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
| |+|+||.++| ++||+|+||| |+|.
T Consensus 299 hayAa~~G~Y~~lt~~e~~~~-g~L~gsitlP-L~VG 333 (393)
T TIGR00532 299 HKFAAIGGKYFPLSKFEVDRD-GALVGEIEIP-LAVG 333 (393)
T ss_pred hHHHHhcCCcccceEEEEcCC-CEEEEEEEEc-ceEE
Confidence 6 7999998544 6899999999 9873
No 8
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=4e-83 Score=661.11 Aligned_cols=287 Identities=23% Similarity=0.281 Sum_probs=253.9
Q ss_pred ChhH-HHHHHHHHHHHH---hCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhhHH
Q 011933 159 DCRR-AAAIRREALQKM---TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVA 234 (474)
Q Consensus 159 d~~r-a~~~RR~~l~~~---tg~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATtEgsLVA 234 (474)
+|++ ++++||++|++. ++..++.++.++.|+++++++||||+||+++||+||||||+|||++|+||||||||||||
T Consensus 2 ~fy~~s~~eR~~~l~~~~~lt~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~vP~Gvag~l~InG~~y~VPMATeE~svVA 81 (417)
T cd00644 2 GFYKLSPEERLQILAEFAGLSEEDVQLLKSGGALPLELADQMIENVIGTFSLPLGVATNFLVNGKDYLVPMATEEPSVVA 81 (417)
T ss_pred CccccCHHHHHHHHHHhcCCCHHHHHHHhccCCChHHHHhcCcccccceeecceeEeccEEECCeEEEEeeeeccchHHH
Confidence 4555 999999999997 444556778888999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC-----CCcceeeEEEEec
Q 011933 235 STNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQHIQCSIA 309 (474)
Q Consensus 235 SanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tS-----R~g~L~~I~~~i~ 309 (474)
|+|||||+++.+||+++.+.+++|+|||+| .++.|+.++.+|+++ ++++|+++||+++ |||||++|++++.
T Consensus 82 s~srGak~i~~~GG~~~~~~~~~m~~q~~~--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~ps~~~rgggl~~i~~~~~ 157 (417)
T cd00644 82 AASNAAKIARKSGGFKTSSSDRLMIGQIQL--VDVSDPAKARAFILA--HKDEILEIANEAHPSLVKRGGGARDIEVRVL 157 (417)
T ss_pred HHhHHHHHHHhcCCEEEEECCCceEeccEE--CcccCHHHHHHHHHH--hHHHHHHHHHhhChhHHhcCCceeEEEEEec
Confidence 999999999999999999999999999996 567899999999985 8999999999984 9999999999999
Q ss_pred C----CeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEeeeec---
Q 011933 310 G----KNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATI--- 382 (474)
Q Consensus 310 G----~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~VvaEa~i--- 382 (474)
| +++|+||.|||||||||||||+++|++|++|+++||+..+++|+||||+||+++|.+ +++.+.+.
T Consensus 158 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~l~~~~~~~~~~~IlsN~~tdk~v~A~~-------~ip~~~l~~~~ 230 (417)
T cd00644 158 DADLGDFLSVHLLVDTKDAMGANIVNTMLEAVAPLLEEITGGEVLLRILSNYATERLVRAKV-------SIPVEALGTKG 230 (417)
T ss_pred CCCCCCeEEEEEEEEccchhcchhHHHHHHHHHHHHHHhCCcceeEEEeccCCCCceEEEEE-------EEcHHHhhhcc
Confidence 8 999999999999999999999999999999999999888899999999999777655 44444332
Q ss_pred --hHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCcccccccc-c----------eee
Q 011933 383 --KEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESS-H----------CIT 449 (474)
Q Consensus 383 --~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS-~----------~iT 449 (474)
++++++++++++..+.+| +||+.| ||||+||||+||||||||||| +|||+ | |+|
T Consensus 231 ~~g~~va~~i~~~~~~a~~d--~~rA~t----------~Nkgi~NgI~Av~lATGqD~r-aVea~ahayA~~~g~y~~lt 297 (417)
T cd00644 231 GSGEEVAKKIALASAFAQVD--PYRAAT----------HNKGIMNGIDAVVLATGNDWR-AVEAGAHAYAARSGQYRSLS 297 (417)
T ss_pred cchhHHHHHHHHHHHHHhhh--HHHhhh----------ccccHHHHHHHHHhhCCCcHH-HHHhhhhhhhhhcCCcccce
Confidence 236777777777766655 666654 999999999999999999995 57764 5 899
Q ss_pred eeEEecCCCcEEEEEEecceeec
Q 011933 450 MMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 450 ~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
+||.+ + ++||+||||| |+|.
T Consensus 298 ~~~~~-~-~~L~~sitlP-l~VG 317 (417)
T cd00644 298 TWEID-D-GKLVGELELP-LAVG 317 (417)
T ss_pred EEEEc-C-CEEEEEEEEe-eeeE
Confidence 99985 4 6899999999 9873
No 9
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=100.00 E-value=4e-81 Score=639.58 Aligned_cols=300 Identities=21% Similarity=0.215 Sum_probs=273.4
Q ss_pred ccccccCCChhHHHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccch
Q 011933 151 YALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEG 230 (474)
Q Consensus 151 ~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATtEg 230 (474)
|.+|+.. +.+|+++.|++++. .++.+++.|+...+|++.. ++||||+||+++||+||||||+|||++|+||||||||
T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~-lt~~~~~~l~~~~l~~~~~-~~~iEN~IG~~~vPlGva~~l~InG~~y~VPmATeE~ 77 (376)
T cd00365 1 PAFRTLS-PHAARLDHIGQLLG-LSHDDVQLLANAALPMDIA-NGMIENVIGTFELPYAVASNFQIDGRDVLVPLVTEEP 77 (376)
T ss_pred Cchhhhc-CHHHHHHHHHHHhc-cChHHHhhccccCCCHHHH-hcccccccceeeeeeEEecCEEEcCcEEEEEeEecch
Confidence 3455555 68899999999985 5788888899888999665 9999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCC-----cceeeEE
Q 011933 231 CLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRF-----ARLQHIQ 305 (474)
Q Consensus 231 sLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tSR~-----g~L~~I~ 305 (474)
|||||+|||||+++.+||+++.+.++.|+|||+|.|.+ |+.++++|+++ +|+++|+++||+++++ |||++|+
T Consensus 78 svVAs~srgak~i~~~GG~~~~~~~~~m~~q~~~~~~~--d~~~~~~~i~~-~~~~~i~~~a~~~~~~~~~rgggl~~i~ 154 (376)
T cd00365 78 SIVAAASYMAKLARAGGGFTTSSSAPLMHAQVQIVLIQ--DPLNAKLSLLR-SGKDEIIELANRKDQLLNSLGGGCRDIE 154 (376)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECCCcEEeeeEEEeCC--CHHHHHHHHHh-hhHHHHHHHHhhhCcchhccCccceEEE
Confidence 99999999999999999999999999999999999987 89999999984 3999999999999666 9999999
Q ss_pred EEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEeeeechHH
Q 011933 306 CSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEE 385 (474)
Q Consensus 306 ~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~VvaEa~i~~e 385 (474)
+++.|+++++||.|||||||||||||+++|++|++|++.+++.++..+++|+|. ||||+|+||+.||.+
T Consensus 155 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~i~~~~~~~~~~~~si~~n~-----------~~g~~v~A~~~I~~~ 223 (376)
T cd00365 155 VHTFGPMLVAHLIVDVGDAMGANMINTMAEAVAPLMEAYTGGMQVRLRSLSNLT-----------GDGRLARAQARITPQ 223 (376)
T ss_pred EEeeCCEEEEEEEEEccchhhchhHHHHHHHHHHHHHHHcCCCceEEEEEeccc-----------CCCcEEEEEEEEcHH
Confidence 999999999999999999999999999999999999998888654455555555 899999999999999
Q ss_pred HHHHHH---cCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCcccc-ccccc-------eeeeeEEe
Q 011933 386 VVTKVL---KTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQN-VESSH-------CITMMEAI 454 (474)
Q Consensus 386 Vv~kiL---kts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~v-VESS~-------~iT~mE~~ 454 (474)
++++.+ +++++++++++..|+..|+.+|| +||||+||||+|||||||||||++ +|++. |+|+||.+
T Consensus 224 ~l~~~~~~g~~~a~~i~~~~~~~a~~d~~rA~---t~Nkgi~NgI~Av~iATGqD~raVea~~h~yA~~~Y~~lt~~e~~ 300 (376)
T cd00365 224 QLETAEFSGEAVIEGILDAYAFKAAVDSYRAA---THNKGIMNGVDPLIVACGQDWRAVEVGAHAYACRHYGSLTTWEKD 300 (376)
T ss_pred HHhhhccccccHHHHHHHHHHHHHhhhhHhhc---cccccHHHHHHHHHhhcCCcHHHHHHHHHHHhhccCCcceEEEEc
Confidence 999999 99999999999889999999999 599999999999999999999775 77788 99999986
Q ss_pred cCCCcEEEEEEecceeec
Q 011933 455 NDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 455 ~dg~dL~~SvtmPsleV~ 472 (474)
++ ++||+|+|| +|+|.
T Consensus 301 ~~-~~L~~sitl-pl~VG 316 (376)
T cd00365 301 NN-GHLVITLEM-SMPVG 316 (376)
T ss_pred CC-CeEEEEEEE-eEEEE
Confidence 44 589999999 88873
No 10
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=89.68 E-value=0.097 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=25.1
Q ss_pred CcchhhHHHHHHHHHhcCCcccccccc
Q 011933 419 FNAHAANIVSAIFIATGQDPAQNVESS 445 (474)
Q Consensus 419 ~Nah~aNgVaAvfIATGQD~A~vVESS 445 (474)
||+++|||+.|+-+|||||| +++|.+
T Consensus 273 ~~ggamnG~~gfna~~aN~~-~Ai~~a 298 (436)
T COG1257 273 LNGGAMNGIDGFNAHTANDV-RAIEAA 298 (436)
T ss_pred hhhhhhhhHHHHHHHHhhHH-HHHHHH
Confidence 79999999999999999999 999997
No 11
>PF14150 YesK: YesK-like protein
Probab=74.08 E-value=3.3 Score=35.47 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhccCCCccccc-hhHHHHHHHHHHHHHHHHhhcCcc
Q 011933 36 YLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVT-LSEIAAIVSLIASFIYLLGFFGID 95 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (474)
|+.-++++.+.|+++|++=+||++|- |.-.++ ..=+..+..++-|.++.=|+.|++
T Consensus 2 ~llg~~~~ii~f~~S~~lr~r~p~k~----~~~il~~ililis~~~v~~S~f~vGGweGmg 58 (81)
T PF14150_consen 2 YLLGIVTFIIVFGVSVLLRKRFPKKQ----PEIILPLILILISLLTVLISIFLVGGWEGMG 58 (81)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHheEcchhhhh
Confidence 67778899999999999999999984 444443 222233334444555555555554
No 12
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=67.64 E-value=19 Score=36.36 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE-EEEe
Q 011933 283 NNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGIS 354 (474)
Q Consensus 283 ~n~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v-isIs 354 (474)
+..+++++..++....-++.+++.+..|+..++.+.+...+.|-..=.....+++-+.|++++|+.++ +-++
T Consensus 213 ~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihve 285 (299)
T PRK09509 213 EERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQD 285 (299)
T ss_pred HHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 34567777777776667788999999999988888888877765444456677888888888887765 4444
No 13
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=59.17 E-value=61 Score=31.49 Aligned_cols=67 Identities=6% Similarity=0.156 Sum_probs=49.5
Q ss_pred CCHHHHHHHHhhcCCCcceeeEEEEecCC-eEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCe
Q 011933 283 NNFETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349 (474)
Q Consensus 283 ~n~~~L~~van~tSR~g~L~~I~~~i~G~-~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~ 349 (474)
+..+++.+..++....-++.+++.+..|+ .+++.+.+...+.|-..-..+.++.+-+.+++++|+.+
T Consensus 192 ~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~ 259 (268)
T TIGR01297 192 EDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIE 259 (268)
T ss_pred ccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCC
Confidence 45677777777555556778899999998 88888888887766555556677777777777777764
No 14
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=57.64 E-value=12 Score=29.36 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHH
Q 011933 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (474)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (474)
=|||-...-.++.+.+|++.|+++.
T Consensus 18 nplP~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 18 NPLPRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999874
No 15
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=53.75 E-value=58 Score=33.55 Aligned_cols=80 Identities=11% Similarity=0.272 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCC
Q 011933 282 PNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDK 361 (474)
Q Consensus 282 p~n~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDK 361 (474)
|+..+++++++.+....-++.+++.+..|+..+++++....+.|--==.-..++.+-+.|++++|....+.|.-+=+.++
T Consensus 214 ~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~ 293 (304)
T COG0053 214 PEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEK 293 (304)
T ss_pred HHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 44566777777777777788999999999999999999999888777777778888888888888544455555544443
No 16
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=52.53 E-value=21 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=22.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 011933 33 LPLYLTNAIFFTLFFSVAYYLLHRWREKIR 62 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (474)
.|+.+.=.+-..+=+..+|++++|||++.-
T Consensus 30 ~p~~~~~l~A~vis~~lS~~ll~~~R~~~~ 59 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVLLRRLRDRAS 59 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666556666667789999999999863
No 17
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=45.12 E-value=86 Score=30.62 Aligned_cols=66 Identities=9% Similarity=0.197 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCC-eEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE
Q 011933 285 FETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (474)
Q Consensus 285 ~~~L~~van~tSR~g~L~~I~~~i~G~-~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v 350 (474)
.+++++..++....-++.+++++..|+ .+++.+.+..-..|..-=.....+++.+.+++++++..-
T Consensus 207 ~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~ 273 (284)
T PF01545_consen 207 VEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYD 273 (284)
T ss_dssp HHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred hhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 466777777777778999999999998 899999988877775555566788888999998988763
No 18
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=43.08 E-value=19 Score=31.74 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=21.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 011933 34 PLYLTNAIFFTLFFSVAYYLLHRWREK 60 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (474)
+-.++..+.|.++|.+.|||+.|=..|
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 446788899999999999998765443
No 19
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.66 E-value=82 Score=29.98 Aligned_cols=58 Identities=28% Similarity=0.587 Sum_probs=35.8
Q ss_pred CCCCCCCchhhhhhh------HHH-------HHHHHHHHHHHHHHHhhhccCCCccccchhHHHHHH-HHHHHHHHHHhh
Q 011933 26 KASDALPLPLYLTNA------IFF-------TLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIV-SLIASFIYLLGF 91 (474)
Q Consensus 26 ~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (474)
...+...+|.+++|= +|. ..+|.+.|||+.+ |.+ |+-..+ .++..+.|.+|+
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~-----------~~~---dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSR-----------QIV---DVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred ccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhc-----------ccc---ccCchHHHHHHHHHHHHHH
Confidence 356777888899883 222 2366777887764 122 232233 334445688999
Q ss_pred cCcccc
Q 011933 92 FGIDFV 97 (474)
Q Consensus 92 ~~~~~~ 97 (474)
.||.|-
T Consensus 112 lGisYG 117 (153)
T PF11947_consen 112 LGISYG 117 (153)
T ss_pred Hhhhhh
Confidence 999985
No 20
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=33.68 E-value=37 Score=34.35 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHH
Q 011933 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (474)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (474)
=|||-+..-.++.|+.|+++|+++.
T Consensus 24 n~~P~ww~~~f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 24 NPLPRWWLWTFYATIVWGFGYLVAY 48 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998875
No 21
>PRK14645 hypothetical protein; Provisional
Probab=32.75 E-value=3.4e+02 Score=25.58 Aligned_cols=97 Identities=7% Similarity=-0.040 Sum_probs=66.7
Q ss_pred CCHHHHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeecc--ccccchhhHHHHHHHHHHHhhh--CCCCeEEEEecC
Q 011933 283 NNFETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTG--DAMGMNMVSKGVQNVLDFLQND--FPDMDVIGISGN 356 (474)
Q Consensus 283 ~n~~~L~~van~t--SR~g~L~~I~~~i~G~~l~lrf~~dTg--DAMG~NMVnk~~E~v~~~I~~~--~p~~~visIsgN 356 (474)
++.+.|.+..+.. ..+-.|.+|+..-.|+.-+||+.+|.. +.++..-.....+++.++|... +++.-.+=+||=
T Consensus 6 ~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 85 (154)
T PRK14645 6 ENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESP 85 (154)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence 3566666666654 667888899988788888899999973 3467666666666666666432 233223778887
Q ss_pred CCCCCccceeeeeeCCceEEEee
Q 011933 357 FCSDKKPAAVNWIEGRGKSVVCE 379 (474)
Q Consensus 357 ~ctDKK~sA~n~i~GRGk~VvaE 379 (474)
=-....-+...|..=.|+.|...
T Consensus 86 GldRpL~~~~df~r~~G~~v~v~ 108 (154)
T PRK14645 86 GPKRPLFTARHFERFAGLKAKVR 108 (154)
T ss_pred CCCCCCCCHHHHHHhCCCEEEEE
Confidence 77777777777777777766653
No 22
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=31.24 E-value=92 Score=29.60 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCccccchhHHHHHHHHHHHHHHHHhhcCcccccc
Q 011933 39 NAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (474)
+.-+++.++-.+|+.+|.++ +-| ...++..+.++.++-++++||+.++..
T Consensus 162 ~~sli~Wl~y~~~lh~r~~~-~~~----------gr~~a~~~i~gf~~~~~~~~gv~~~~~ 211 (214)
T PF01578_consen 162 VWSLITWLVYGAYLHLRSWK-GWR----------GRRAAYLSIIGFLLLLLSYFGVNLLLE 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhh-chh----------hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555556666666554 444 235678888888999999999988764
No 23
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=30.81 E-value=1.6e+02 Score=26.59 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCccccchhHH---HHHHHHHHHHHHHHh
Q 011933 39 NAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEI---AAIVSLIASFIYLLG 90 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 90 (474)
+-+.+.+.+...|+.+++-|||..+. ..++.+- .-.++++|++++.+.
T Consensus 34 ~~~~~~~~~~~i~~~i~~~R~~~~~g----~isf~~a~~~g~~~~~ia~li~~v~ 84 (163)
T PF13858_consen 34 GILSMVITIIFIYFAIRRYRKKYNGG----FISFGQAFKVGFLISLIAGLISAVF 84 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC----CeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677777899999999987655 5677773 445666677666543
No 24
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=30.33 E-value=50 Score=26.15 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=26.8
Q ss_pred hhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCC
Q 011933 237 NRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDP 282 (474)
Q Consensus 237 nRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p 282 (474)
..|.|.+...+...+.--...-.+-.++.|+|.+ .++.|.++|
T Consensus 17 ~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~---aa~~~~~sp 59 (65)
T PF07045_consen 17 KYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSME---AAKAWYNSP 59 (65)
T ss_dssp HTT-EEEEECEEEEEEEST-SSSEEEEEEESSHH---HHHHHHCSH
T ss_pred HcCCEEEEECCceeEEecCCCCCeEEEEECCCHH---HHHHHHCCH
Confidence 4677777664444433333556778999999854 457888875
No 25
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=30.13 E-value=1.7e+02 Score=29.79 Aligned_cols=101 Identities=14% Similarity=0.294 Sum_probs=53.0
Q ss_pred hcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEE------e--c--CCeEEEEEEeeccccccchhhHHHHHHHHH
Q 011933 270 MRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCS------I--A--GKNLYIRFCCTTGDAMGMNMVSKGVQNVLD 339 (474)
Q Consensus 270 ~~A~~l~~wle~p~n~~~L~~van~tSR~g~L~~I~~~------i--~--G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~ 339 (474)
+|-..+.+|-+. ...+|++......|||.+..|... + . +..|.|||+=+. --+-..+|.+++
T Consensus 98 eDeefL~~yR~q--Rm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~--~~~C~~mn~~L~---- 169 (265)
T PF02114_consen 98 EDEEFLEQYREQ--RMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPG--FPRCEIMNSCLE---- 169 (265)
T ss_dssp --HHHHHHHHHH--HHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TT--SCCHHHHHHHHH----
T ss_pred ccHHHHHHHHHH--HHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCC--CchHHHHHHHHH----
Confidence 344556777663 566777666666899999988641 1 1 235666665444 334445555554
Q ss_pred HHhhhCCCCeEEEEec-------CCCCCCccceeeeeeCCceEEEeeee
Q 011933 340 FLQNDFPDMDVIGISG-------NFCSDKKPAAVNWIEGRGKSVVCEAT 381 (474)
Q Consensus 340 ~I~~~~p~~~visIsg-------N~ctDKK~sA~n~i~GRGk~VvaEa~ 381 (474)
.|...||..+.+.|.+ ||...-.|+-..|..| .++...+
T Consensus 170 ~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G---~l~~~~V 215 (265)
T PF02114_consen 170 CLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNG---DLIGNFV 215 (265)
T ss_dssp HHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETT---EEEEEEC
T ss_pred HHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECC---EEEEeEE
Confidence 4445588888776654 6777889999999866 4555543
No 26
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.48 E-value=1e+02 Score=33.96 Aligned_cols=43 Identities=14% Similarity=0.311 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCcc--ccchhHHHHHHHHHHHHHHH
Q 011933 46 FFSVAYYLLHRWREKIRNSTPLH--VVTLSEIAAIVSLIASFIYL 88 (474)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 88 (474)
+|.+.|.+.|=|-|-+|...... -++.+.+.+++.++..++|+
T Consensus 228 lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~ 272 (460)
T PRK13108 228 FYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYI 272 (460)
T ss_pred HHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHH
Confidence 34566777788889999876322 37888888888888877665
No 27
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=28.18 E-value=59 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=16.4
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 011933 25 PKASDALPLPLYLTNAIFFTLFFSVAYYLLHR 56 (474)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (474)
+|-+|.-|+=+ |.++|-....||++|
T Consensus 2 PkT~D~a~i~l------y~~l~~~s~~~Li~k 27 (29)
T TIGR03063 2 PKTGDSAQIGL------YAVLFLGSGLFLIRK 27 (29)
T ss_pred CCCccchhHHH------HHHHHHHHHHHHhhc
Confidence 46777777644 445666666777755
No 28
>COG5548 Small integral membrane protein [Function unknown]
Probab=27.40 E-value=85 Score=28.06 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhccCCCccccchhHHHHHHHHHHHHHHHHhhcCcccccc
Q 011933 36 YLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (474)
.|-.++||.+-|.++-||++|=|+. --+.++.+|. -||+||++-|+-|
T Consensus 30 SL~sG~~~G~~~~~A~yL~~~g~~~---------------Gl~~A~~~s~-~Ll~~~~~R~~~s 77 (105)
T COG5548 30 SLLSGVFSGLLLFVAAYLQLQGQTW---------------GLILATVVSA-ALLVFFALRLVRS 77 (105)
T ss_pred hhHHHHHHhHHHHHHHHHHHcCccc---------------CeehHHHHHH-HHHHhcchhcccc
Confidence 3567889999999999999875542 1134455554 3789999999865
No 29
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=26.52 E-value=60 Score=30.89 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 011933 36 YLTNAIFFTLFFSVAYYLLHR 56 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (474)
|..+.++|.++|.++||+|.+
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k 50 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTR 50 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 445777888889999999877
No 30
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=26.41 E-value=1e+02 Score=28.57 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=39.1
Q ss_pred CChhcHHHHHHHhcCCCCHHHHHHHHhhc-CCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 011933 267 ASAMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (474)
Q Consensus 267 ~~~~~A~~l~~wle~p~n~~~L~~van~t-SR~g~L~~I~~~i----------------~G~~l~lrf~~dTgDAMG~N 328 (474)
....+..+.++|+++ |.++|.++|++. ...|.-.++++.+ .|.+=-+| +.-|++-|.|
T Consensus 38 ~~~~~~~ea~~~i~~--~~~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlr--I~IG~g~G~N 112 (130)
T PF09551_consen 38 SQAKSKEEAREVIRE--NLPEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALR--ITIGEGKGHN 112 (130)
T ss_pred ccCCCHHHHHHHHHH--hHHHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEE--EEecCccCcc
Confidence 345567788999985 999999999886 3333334444443 35444444 5678889988
No 31
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=26.35 E-value=3.9e+02 Score=24.65 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecC
Q 011933 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGN 356 (474)
Q Consensus 285 ~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN 356 (474)
.+.-..+++...+--++.+..+.+.|+.+||=+..+ .+ .....+.-+.|.+.+++.+|++.-+.+++|
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~-~~---~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D 141 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLD-FN---RFNTKKIKKKVEKAVKSADPRIYNVYVSTD 141 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEec-cc---ccchhHHHHHHHHHHHHhCCCccEEEEEcC
Confidence 334445666678888999999999999999998888 44 577788889999999988888665655554
No 32
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=26.02 E-value=43 Score=32.45 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=34.9
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCcc--ccchhHHHHHHHHH
Q 011933 27 ASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLH--VVTLSEIAAIVSLI 82 (474)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (474)
.-.|.-+.+..+|++|.++..-.++|+|++|- |-- +++..--+.+++|+
T Consensus 117 d~Ea~~~SifynNalFl~l~i~~SF~~lk~~~-------p~~Nyi~S~~~asgl~all 167 (170)
T PF07074_consen 117 DYEATTFSIFYNNALFLALVIVFSFYLLKNFS-------PVFNYIFSMSGASGLVALL 167 (170)
T ss_pred hhhheeeehhhhchHHHHHHHHHHHHHHccCC-------ccceeeehHHHHHHHHHHH
Confidence 34577788899999999999999999998774 433 44444444455544
No 33
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=25.34 E-value=1e+02 Score=29.82 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.3
Q ss_pred hhcHHHHHHHhcCCCCHHHHHHHHhhc-CCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 011933 269 AMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (474)
Q Consensus 269 ~~~A~~l~~wle~p~n~~~L~~van~t-SR~g~L~~I~~~i----------------~G~~l~lrf~~dTgDAMG~N 328 (474)
..+..+.++|+.. |.++|.++|+++ .+-|.=.++++.+ +|.+=-+ .+.-|++-|+|
T Consensus 75 ~~s~~ea~~~i~~--~l~~Ie~~a~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAl--rI~IG~g~G~N 147 (168)
T TIGR02837 75 LKSLEEARRVIRE--NLPEIERIAESVIKAEGADYKVRVELGKYSFPTKLYGNIVLPAGEYEAL--RILIGEGAGAN 147 (168)
T ss_pred CCCHHHHHHHHHH--hhHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCCcccCCEeccCCceEEE--EEEecCcCCcc
Confidence 3455677888875 899999999876 3333334444443 3444444 45678899998
No 34
>PRK14646 hypothetical protein; Provisional
Probab=23.51 E-value=5.8e+02 Score=24.01 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=64.9
Q ss_pred HHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeecccc--ccchhhHHHHHHHHHHHhhh--CCCCeEEEEecCCCCC
Q 011933 287 TLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTGDA--MGMNMVSKGVQNVLDFLQND--FPDMDVIGISGNFCSD 360 (474)
Q Consensus 287 ~L~~van~t--SR~g~L~~I~~~i~G~~l~lrf~~dTgDA--MG~NMVnk~~E~v~~~I~~~--~p~~~visIsgN~ctD 360 (474)
.|.+.++.. +.+-.|.+|+..-.|+.-+||+.+|.-|- ++..--....+++.++|... +++.-.+=+||==-..
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 344444432 66789999999988888899999987443 55555556666666666432 3343347788888888
Q ss_pred CccceeeeeeCCceEEEeee
Q 011933 361 KKPAAVNWIEGRGKSVVCEA 380 (474)
Q Consensus 361 KK~sA~n~i~GRGk~VvaEa 380 (474)
..-+...|..=.|+.|-...
T Consensus 88 pL~~~~df~r~~G~~v~V~l 107 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVEL 107 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEE
Confidence 88888888877788776654
No 35
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=23.35 E-value=1.1e+02 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred ccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcC
Q 011933 245 ASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLED 281 (474)
Q Consensus 245 ~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~ 281 (474)
..+|+.|...++ |..++.|.+.+||.+...-|+.
T Consensus 11 ~~eGI~si~~~~---~~~Vl~FE~edDA~RYa~lLEA 44 (86)
T PF11360_consen 11 ETEGIYSIQNKD---RNVVLMFEDEDDAERYAGLLEA 44 (86)
T ss_pred CCCcEEEEEeCC---CCEEEEEccHHHHHHHHHHHHh
Confidence 578999988777 8899999999999998888875
No 36
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.94 E-value=66 Score=29.12 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 011933 36 YLTNAIFFTLFFSVAYYLLHR 56 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (474)
++.|-+||.+|...+||+..-
T Consensus 2 ~ll~l~ffi~Fl~~~Y~~~y~ 22 (109)
T PF06129_consen 2 WLLYLIFFILFLVLCYFFNYY 22 (109)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 567889999999999998754
No 37
>PRK14641 hypothetical protein; Provisional
Probab=22.84 E-value=7e+02 Score=24.09 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhh--CC---CCeE-EEEecCCCCC
Q 011933 287 TLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQND--FP---DMDV-IGISGNFCSD 360 (474)
Q Consensus 287 ~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~--~p---~~~v-isIsgN~ctD 360 (474)
.+...+.....+-.|.+|+..-.|+.-+||+.+|.-+-++.+-.....+++.++|..+ .+ +... +=+||==-.+
T Consensus 12 ~~~~~~~~~~~G~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldR 91 (173)
T PRK14641 12 VLEASAGTKGEGVYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGE 91 (173)
T ss_pred HHHhhhccccCCeEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCC
Confidence 4444444456777899999888888888999999655677777777777777777532 11 1233 7788888888
Q ss_pred CccceeeeeeCCceEEEeeee
Q 011933 361 KKPAAVNWIEGRGKSVVCEAT 381 (474)
Q Consensus 361 KK~sA~n~i~GRGk~VvaEa~ 381 (474)
..-+...|..=+|+.|.....
T Consensus 92 pL~~~~~f~r~~G~~V~V~l~ 112 (173)
T PRK14641 92 PIILPRQYGRHVGRLLRVTYR 112 (173)
T ss_pred cCCCHHHHHHhCCCEEEEEEe
Confidence 888888888888888876653
No 38
>PRK03557 zinc transporter ZitB; Provisional
Probab=22.67 E-value=7.3e+02 Score=25.41 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=44.6
Q ss_pred HHHHHHHH-hhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE-EEEecCCCCC
Q 011933 285 FETLAVVF-NRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGISGNFCSD 360 (474)
Q Consensus 285 ~~~L~~va-n~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v-isIsgN~ctD 360 (474)
.+++++.. ++....-++.+++.+..|+..++.+.+...+.+ =..+..+.+-+.|+++++-.++ +-++-+-|.+
T Consensus 222 ~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~ 296 (312)
T PRK03557 222 IAELKRRLCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHG 296 (312)
T ss_pred HHHHHHHHHhcCCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCC
Confidence 34554443 233333467788888889988887777664433 2345667777777776754444 5666555544
No 39
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=22.57 E-value=1.6e+02 Score=29.04 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=34.3
Q ss_pred hhccCCCccccchhHHHHHHHHH------HHHHHHHhhcCccccccccc
Q 011933 60 KIRNSTPLHVVTLSEIAAIVSLI------ASFIYLLGFFGIDFVQSFIS 102 (474)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 102 (474)
-+.++-|||.-+++-+++++.++ -.+.|.+|+.| -+|.++.
T Consensus 63 ~~~e~LPLhlC~ia~~~~~~~l~~~~~~~~~~~~~~gi~G--a~~Ali~ 109 (222)
T TIGR02206 63 TLDESLPLHLCDIAIILAAIMLITKRRWFFQLTYFWGIGG--SFQALLT 109 (222)
T ss_pred chhhcCChhhccHHHHHHHHHHHcCcHHHHHHHHHHHHHH--HHHHHhc
Confidence 57789999999999999888885 46788888877 7888873
No 40
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.58 E-value=2.2e+02 Score=24.29 Aligned_cols=59 Identities=27% Similarity=0.495 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHhhhCCCCeEEEEe-cCCCCCCccceeeeeeCCceEEEeeeechHHHHHHHHc
Q 011933 328 NMVSKGVQNVLDFLQNDFPDMDVIGIS-GNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLK 392 (474)
Q Consensus 328 NMVnk~~E~v~~~I~~~~p~~~visIs-gN~ctDKK~sA~n~i~GRGk~VvaEa~i~~eVv~kiLk 392 (474)
|+. ++++.+.+.|++ .|+.+++-.- =++|...+-..-..++ |+.|.++. +++.+++|.+
T Consensus 11 Nl~-~g~~~~~~~Le~-~p~~~Vie~gCl~~Cg~C~~~pFAlVn--G~~V~A~t--~eeL~~kI~~ 70 (78)
T PF07293_consen 11 NLA-SGTDQVYEKLEK-DPDIDVIEYGCLSYCGPCAKKPFALVN--GEIVAAET--AEELLEKIKE 70 (78)
T ss_pred Cch-hhhHHHHHHHhc-CCCccEEEcChhhhCcCCCCCccEEEC--CEEEecCC--HHHHHHHHHH
Confidence 555 478989999986 6998874322 2566666555555555 66666664 6888888754
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.44 E-value=5.3e+02 Score=24.30 Aligned_cols=90 Identities=17% Similarity=0.308 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEE-E-----ec--C--CeEEEEEEeeccccccchhhHHHHHHHHHHHhh
Q 011933 274 ELKFFLEDPNNFETLAVVFNRSSRFARLQHIQC-S-----IA--G--KNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQN 343 (474)
Q Consensus 274 ~l~~wle~p~n~~~L~~van~tSR~g~L~~I~~-~-----i~--G--~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~ 343 (474)
.+.+|-+. ..++|++.+.+..+||.+..|.. . +. + ..+.|+|.-+.+-.. .+++.. ++.|.+
T Consensus 39 ~l~~~R~~--R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~C--k~m~~~----l~~LA~ 110 (175)
T cd02987 39 FLQQYREQ--RMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGC--AALNSS----LLCLAA 110 (175)
T ss_pred HHHHHHHH--HHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchH--HHHHHH----HHHHHH
Confidence 45555442 45666666666789999999876 2 11 2 378889876654322 244444 444444
Q ss_pred hCCCCeEEEEec-------CCCCCCccceeeeeeC
Q 011933 344 DFPDMDVIGISG-------NFCSDKKPAAVNWIEG 371 (474)
Q Consensus 344 ~~p~~~visIsg-------N~ctDKK~sA~n~i~G 371 (474)
++|+.+.+.|.. +|-....|+-+-|-.|
T Consensus 111 ~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G 145 (175)
T cd02987 111 EYPAVKFCKIRASATGASDEFDTDALPALLVYKGG 145 (175)
T ss_pred HCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECC
Confidence 577766665544 4666678887777765
No 42
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.21 E-value=75 Score=27.02 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 011933 37 LTNAIFFTLFFSVAYYLLHRWR 58 (474)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ 58 (474)
++..+++.++|.+.||++.|=.
T Consensus 3 ~~~l~~~vv~~~i~yf~~~rpq 24 (84)
T TIGR00739 3 LTTLLPLVLIFLIFYFLIIRPQ 24 (84)
T ss_pred HHHHHHHHHHHHHHHHheechH
Confidence 3455788889999999986533
No 43
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.12 E-value=94 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 011933 40 AIFFTLFFSVAYYLLHRWREK 60 (474)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~ 60 (474)
-++|.++|.++||++.|=+.|
T Consensus 7 ll~lv~i~~i~yF~~iRPQkK 27 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRK 27 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHH
Confidence 356778899999999765544
Done!