Query 011933
Match_columns 474
No_of_seqs 281 out of 735
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r4f_A 3-hydroxy-3-methylgluta 100.0 1E-115 3E-120 905.5 30.9 340 133-472 27-369 (441)
2 1r31_A 3-hydroxy-3-methylgluta 100.0 2.6E-91 8.8E-96 722.5 21.9 296 153-472 3-326 (428)
3 3qae_A 3-hydroxy-3-methylgluta 100.0 4.2E-88 1.4E-92 702.0 19.4 294 155-472 37-357 (458)
4 3byp_A CZRB protein; membrane 76.1 13 0.00044 29.5 8.2 71 285-355 12-85 (94)
5 3h90_A Ferrous-iron efflux pum 63.0 25 0.00084 33.6 8.5 66 285-350 208-273 (283)
6 2zzt_A Putative uncharacterize 62.6 36 0.0012 28.1 8.4 69 286-354 13-83 (107)
7 3j1z_P YIIP, cation efflux fam 42.7 26 0.00089 34.1 5.0 66 285-350 217-282 (306)
8 2rdd_B UPF0092 membrane protei 41.0 19 0.00066 25.1 2.7 22 38-59 4-25 (37)
9 3hhl_A RPA0582; alpha-beta-bar 23.1 56 0.0019 29.0 3.3 66 236-306 63-131 (143)
10 1v54_C Cytochrome C oxidase po 19.6 1.2E+02 0.004 29.3 5.0 21 49-69 50-72 (261)
No 1
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=100.00 E-value=1e-115 Score=905.50 Aligned_cols=340 Identities=56% Similarity=0.921 Sum_probs=332.8
Q ss_pred CCCHHHHHHHHHcCCCCcccccccCCChhHHHHHHHHHHHHH--hCCCCCCCCCCCCChhhhhccccccceEEeeeceee
Q 011933 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKM--TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (474)
Q Consensus 133 ~~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~--tg~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGV 210 (474)
.++||||++++.+|++|+|+||+.++|++||+.+||++|++. ++.++++|+++++||++++++||||+|||+|||+||
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv 106 (441)
T 2r4f_A 27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV 106 (441)
T ss_dssp SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence 458999999999999999999999999999999999999999 778899999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 011933 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (474)
Q Consensus 211 AGPLlInG~~y~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~ 290 (474)
||||+|||++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|+++|++|++|++
T Consensus 107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~ 186 (441)
T 2r4f_A 107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE 186 (441)
T ss_dssp EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeee
Q 011933 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIE 370 (474)
Q Consensus 291 van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~ 370 (474)
+++++||||||++|++++.|++||+||.|+||||||||||||++|++|+||+++||++.+++||||||+||||+|+|||+
T Consensus 187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~ 266 (441)
T 2r4f_A 187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE 266 (441)
T ss_dssp HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccccCcchhhHHHHHHHHHhcCCccccccccceeee
Q 011933 371 GRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITM 450 (474)
Q Consensus 371 GRGk~VvaEa~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~gG~Nah~aNgVaAvfIATGQD~A~vVESS~~iT~ 450 (474)
||||+|+||+++|++|++++|+|++++++|+|..||++||++||++||||||+||||+||||||||||||+||||+|+|.
T Consensus 267 gRGk~V~ae~~i~~~vv~~vl~ts~~a~vd~~~aknl~gsa~ag~~gt~Nkh~aNgI~Av~lATGqD~a~~vEss~~~t~ 346 (441)
T 2r4f_A 267 GRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL 346 (441)
T ss_dssp CCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEE
T ss_pred CCceEEEEEEecHHHHHHHHHCcCHHHHHHHHHHhhhhHHHhhccCCcCCCChHHHhHHHhhhcCCcHHHHHhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec-CCCcEEEEEEecceeec
Q 011933 451 MEAIN-DGKDLHISVTMPSIEVI 472 (474)
Q Consensus 451 mE~~~-dg~dL~~SvtmPsleV~ 472 (474)
||.++ ||+|||+|||||||+|.
T Consensus 347 le~~~~~~~dL~~svtlPsL~VG 369 (441)
T 2r4f_A 347 MEASGPTNEDLYISCTMPSIEIG 369 (441)
T ss_dssp EEEESTTSCEEEEEEEEEEECCC
T ss_pred eeeeccCCCeEEEEEECCCceEE
Confidence 99986 66699999999999983
No 2
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*
Probab=100.00 E-value=2.6e-91 Score=722.47 Aligned_cols=296 Identities=19% Similarity=0.186 Sum_probs=280.7
Q ss_pred ccccCCChhH-HHHHHHHHHHHHhC---CCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeecccc
Q 011933 153 LESKLGDCRR-AAAIRREALQKMTG---RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATT 228 (474)
Q Consensus 153 les~l~d~~r-a~~~RR~~l~~~tg---~sl~~l~~~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATt 228 (474)
..|++.+|++ ++++||++|++.++ .++++|+.+++||++++++||||+|||++||+||||||+|||++|+||||||
T Consensus 3 m~s~~~~f~~~s~~~Rr~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lP~GvAgpl~InG~~y~VPMATe 82 (428)
T 1r31_A 3 LDSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVE 82 (428)
T ss_dssp CCCCCTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHSSCCSCHHHHHHHSSSEEEEEEEEEEEECSCEETTEECCEEEECS
T ss_pred CCCcccccccccHHHHHHHHHHhcCCCHHHHHhccccCCChHHHHhcccccccceeecceeEecCEEECCeEEEeeeeec
Confidence 3457888888 99999999999999 4566788889999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC-----CCcceee
Q 011933 229 EGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQH 303 (474)
Q Consensus 229 EgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tS-----R~g~L~~ 303 (474)
|||||||+|||||+++.+||+++++++|+|||||+|.+ +.++.++++|+++ |+++|+++||+++ |||||++
T Consensus 83 E~slVAs~srgaK~i~~~GG~~t~~~~~~M~r~~~~~~--~~~a~~~~~~i~~--~~~~l~~~a~~ts~~~~kr~ggl~~ 158 (428)
T 1r31_A 83 EPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVG--IQDPLNARLSLLR--RKDEIIELANRKDQLLNSLGGGCRD 158 (428)
T ss_dssp CTTHHHHHHHHHHHHHTTTCBEEEECCCEEEEEEEEES--CSCHHHHHHHHHH--THHHHHHHHHTTCHHHHHTTCEEEE
T ss_pred cccHHHHhhHHHHHHHhCCCEEEEECCCcEEeeeEEcc--ccCHHHHHHHHHH--HHHHHHHHHHhhCHHHHhCCcccce
Confidence 99999999999999999999999999999999999876 6789999999996 9999999999998 9999999
Q ss_pred EEEEecCC-----eEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEe
Q 011933 304 IQCSIAGK-----NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVC 378 (474)
Q Consensus 304 I~~~i~G~-----~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~Vva 378 (474)
|++++.|+ ++|+||.||||||||||||||++|++|+||+++||++.+++||||||+| |+|+|
T Consensus 159 i~~~~~g~~~~g~~l~l~~~~~tgDAMGaNmvn~~~E~v~~~l~~~~~~~~~~~I~sN~~td-------------k~V~A 225 (428)
T 1r31_A 159 IEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADL-------------RLARA 225 (428)
T ss_dssp EEEEEECCCTTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECSCCTT-------------SEEEE
T ss_pred EEEEecCCcCcCcEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCCEEEEEcCccCCC-------------ceEEE
Confidence 99999987 9999999999999999999999999999999999999999999999999 47899
Q ss_pred eeechHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcc----ccCcchhhHHHHHHHHHhcCCcccccccc---------
Q 011933 379 EATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGAL----GGFNAHAANIVSAIFIATGQDPAQNVESS--------- 445 (474)
Q Consensus 379 Ea~i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~----gG~Nah~aNgVaAvfIATGQD~A~vVESS--------- 445 (474)
|+.||.++++++ +++++++++ |++.||++||+. +|||||+||||+|||||||||||+++|||
T Consensus 226 e~~ip~~~l~~~-~~~~~~~~~----k~~~~s~~A~~~~~RA~t~Nk~~~Ngi~Av~lATGqD~ravea~sHayA~~~g~ 300 (428)
T 1r31_A 226 QVRITPQQLETA-EFSGEAVIE----GILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGH 300 (428)
T ss_dssp EEEECHHHHCCS-SSCHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTSS
T ss_pred EEEEcHHHHhcC-CCCHHHHHH----HHHHHHHHhcchHHhhccCCCCHHHHHHHHHHHcCCCHHHHHhhhhHhHhhcCC
Confidence 999999999999 999999998 899999999997 88999999999999999999999999998
Q ss_pred -ceeeeeEEecCCCcEEEEEEecceeec
Q 011933 446 -HCITMMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 446 -~~iT~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
+|+|+||.+++ ||||+||||| |+|.
T Consensus 301 y~~lt~~e~~~~-g~L~~svtlP-l~VG 326 (428)
T 1r31_A 301 YGSLTTWEKDNN-GHLVGTLEMP-MPVG 326 (428)
T ss_dssp CCCSEEEEECTT-SCEEEEEEEE-CCCC
T ss_pred cccceEEEEcCC-CeEEEEEEee-eeEE
Confidence 89999999865 4999999999 9873
No 3
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=100.00 E-value=4.2e-88 Score=702.04 Aligned_cols=294 Identities=21% Similarity=0.228 Sum_probs=272.8
Q ss_pred ccCCChhH-HHHHHHHHHHHHhCCCCCC---CCC-CCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccc
Q 011933 155 SKLGDCRR-AAAIRREALQKMTGRSLQG---LPL-DGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229 (474)
Q Consensus 155 s~l~d~~r-a~~~RR~~l~~~tg~sl~~---l~~-~~~d~~~i~g~~iEN~IG~v~IPvGVAGPLlInG~~y~VPMATtE 229 (474)
+.+.+|++ ++++|+++|++.++++.++ |.. ..+|. +++++||||+|||++||+||||||+|||++|+|||||||
T Consensus 37 ~~~~~F~k~s~~eR~~~l~~~~~l~~~~~~~l~~~~~l~~-~~~~~~iEN~IG~~~lPvGvAgpl~InG~~y~VPMATeE 115 (458)
T 3qae_A 37 ISWNGFSKKSYQERLELLKAQALLSPERQASLEKDEQMSV-TVADQLSENVVGTFSLPYSLVPEVLVNGQEYTVPYVTEE 115 (458)
T ss_dssp CCCTTTTTSCHHHHHHHHHHHTCSCHHHHHHHHTTCCCCH-HHHHHHSSSCCCCCCCCCEEEEEEEETTEEEEEEECCCS
T ss_pred CCCcCccccCHHHHHHHHHHhcCCCHHHHHHHhccCCCCH-HHHhcccceeeeeeecceeeecCEEECCEEEEeeceecc
Confidence 66889999 9999999999999876543 443 34664 799999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhhhhhccCCeEEEEcccceeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhh-----cCCCcceeeE
Q 011933 230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNR-----SSRFARLQHI 304 (474)
Q Consensus 230 gsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~-----tSR~g~L~~I 304 (474)
||||||+|||||+++.+||+++++++|+|||||+| +++.++.++++|+++ ++++|+++||+ ++|||||++|
T Consensus 116 ~slVASasrGaK~i~~~GG~~t~v~~~~Mtrqv~f--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~~s~~~rgggl~~i 191 (458)
T 3qae_A 116 PSVVAAASYASKIIKRAGGFTTQVHQRQMIGQVAL--YQVANPKLAQEKIAS--KKAELLELANQAYPSIVKRGGGARDL 191 (458)
T ss_dssp TTHHHHHHHHHHHHHHTTCBEEEECCCCEEEEEEE--ECCSCHHHHHHHHHH--THHHHHHHHHHHCHHHHTTTCEEEEE
T ss_pred ccHHHHhhHHHHHHHhcCCEEEEEcCCceEeeeEe--cchhhHHHHHHHHHH--HHHHHHHHHHhhCchhhhcccceeEE
Confidence 99999999999999999999999999999999775 778999999999996 99999999996 3799999999
Q ss_pred EEEe---cCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeEEEEecCCCCCCccceeeeeeCCceEEEeeee
Q 011933 305 QCSI---AGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAT 381 (474)
Q Consensus 305 ~~~i---~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~visIsgN~ctDKK~sA~n~i~GRGk~VvaEa~ 381 (474)
++++ .|+++|+||.||||||||||||||++|++|+||++++|++.+++||||||+|| +|+||+.
T Consensus 192 ~~~~~~~~g~~l~lrf~~~TgDAMGaNMvn~~~E~v~~~l~~~~~~~~~~~I~sN~~tdk-------------~V~Ae~~ 258 (458)
T 3qae_A 192 HVEQIKGEPDFLVVYIHVDTQEAMGANMLNTMLEALKPVLEELSQGQSLMGILSNYATDS-------------LVTASCR 258 (458)
T ss_dssp EEEEECSSSCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHHHHTSEEEEEEECSCCGGG-------------EEEEEEE
T ss_pred EEEEecCCCCEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCceEEEEeCcCCCCc-------------eEEEEEE
Confidence 9998 79999999999999999999999999999999999999988999999999998 4788999
Q ss_pred chHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccc----cCcchhhHHHHHHHHHhcCCccccccccc----------e
Q 011933 382 IKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALG----GFNAHAANIVSAIFIATGQDPAQNVESSH----------C 447 (474)
Q Consensus 382 i~~eVv~kiLkts~~alvdln~~knltGsa~aGs~g----G~Nah~aNgVaAvfIATGQD~A~vVESS~----------~ 447 (474)
||.++++++ +++++++++ |++.||++||+.+ +||||+||||+|||||||||||+++|||| |
T Consensus 259 ip~~~l~~~-~~~~~~~ae----k~~~~s~~A~~~~yRA~t~NkgiaNgI~Av~lATGqD~aaveesshayAar~G~Y~~ 333 (458)
T 3qae_A 259 IAFRYLSRQ-KDQGREIAE----KIALASQFAQADPYRAATHNKGIFNGIDAILIATGNDWRAIEAGAHAFASRDGRYQG 333 (458)
T ss_dssp EEHHHHCSS-TTHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSSCCC
T ss_pred EcHHHHhhc-CCCHHHHHH----HHHHHHHHhccchhhhhhcchhhHhhhhHHHhhcCCchhHhHHHhhHHHhhcCCccc
Confidence 999999998 999999998 8899999999987 89999999999999999999999999986 5
Q ss_pred eeeeEEecCCCcEEEEEEecceeec
Q 011933 448 ITMMEAINDGKDLHISVTMPSIEVI 472 (474)
Q Consensus 448 iT~mE~~~dg~dL~~SvtmPsleV~ 472 (474)
+|+||.+++++|||+||||| |+|.
T Consensus 334 lT~~e~~~~~g~L~~svtlP-L~VG 357 (458)
T 3qae_A 334 LSCWTLDLEREELVGEMTLP-MPVA 357 (458)
T ss_dssp SEEEEEETTTTEEEEEEEEE-CCCC
T ss_pred ceeEEEecCCCEEEEEEEec-ceee
Confidence 89999986667999999999 9874
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=76.05 E-value=13 Score=29.50 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=51.3
Q ss_pred HHHHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE-EEEec
Q 011933 285 FETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGISG 355 (474)
Q Consensus 285 ~~~L~~van~t--SR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v-isIsg 355 (474)
.++|++...+. ...-++.+++.+..|...++.+.+...+.|-..-....++.+-+.|++.||..++ +-+..
T Consensus 12 ~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vtIh~ep 85 (94)
T 3byp_A 12 VERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVEP 85 (94)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45666666666 6677888999998898888888888776664434456677777788778987655 55553
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=63.00 E-value=25 Score=33.55 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE
Q 011933 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (474)
Q Consensus 285 ~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v 350 (474)
.+++++..++....-++.+++.+..|+..++.+++...+-|-..-.....+.+-+.|+++||..++
T Consensus 208 ~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v 273 (283)
T 3h90_A 208 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDV 273 (283)
T ss_dssp HHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 456666666666667888999999999888888888877665555567778888888888987655
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=62.57 E-value=36 Score=28.06 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCC-eE-EEEe
Q 011933 286 ETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDM-DV-IGIS 354 (474)
Q Consensus 286 ~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~-~v-isIs 354 (474)
++|++..++....-++.++..+..|+.+++.+.+...+.|-..-.-..++.+-..|++.||.. .+ +-+.
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvE 83 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVE 83 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 567777766666677888889888988888888887666644344567777777888789864 33 4454
No 7
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=42.71 E-value=26 Score=34.08 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHhhhCCCCeE
Q 011933 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (474)
Q Consensus 285 ~~~L~~van~tSR~g~L~~I~~~i~G~~l~lrf~~dTgDAMG~NMVnk~~E~v~~~I~~~~p~~~v 350 (474)
.+++++..++....-++.+++.+..|+..++.+.+..-+-|-..=.-..+|.+-+.|+++||..++
T Consensus 217 ~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v 282 (306)
T 3j1z_P 217 RQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEV 282 (306)
T ss_dssp HHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 456677777777777888899999999998888888776665444556677777888888987665
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=41.00 E-value=19 Score=25.10 Aligned_cols=22 Identities=14% Similarity=0.393 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 011933 38 TNAIFFTLFFSVAYYLLHRWRE 59 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ 59 (474)
+.-+.+.++|.+.||++-|=..
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~ 25 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQ 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 4456788899999999977443
No 9
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=23.06 E-value=56 Score=28.95 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=38.5
Q ss_pred hhhhhhhhhccCCeEEEEcccc---eeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEE
Q 011933 236 TNRGCKAIYASGGAASMLLRDG---MTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQC 306 (474)
Q Consensus 236 anRGaKai~~sGG~~t~v~~d~---MtRapv~~f~~~~~A~~l~~wle~p~n~~~L~~van~tSR~g~L~~I~~ 306 (474)
.-.|.|.+-. ||....+..+. -.|..+++|+|.+ .+..|.++|+ .++++..-..+...-+|.-.+.
T Consensus 63 ~~~GG~~l~r-G~~~~~lEG~~~e~~~~~viieFPS~~---aa~a~y~Spe-Yq~a~~~R~~a~~~~rli~~~~ 131 (143)
T 3hhl_A 63 ERLGGXVVWQ-GQFELMLIGPQDEHWDHVFIAEYPSVA---AFVEMIRDPV-YREAVKHRQAAVEDSRLIRLXP 131 (143)
T ss_dssp HHTTCEEEEE-EEEEEEEESCTTCCCSEEEEEEESCHH---HHHHHHHCHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHcCCEEEee-cCCceeEECCCCCCCCeEEEEECCCHH---HHHHHHcCHH-HHHHHHHHHHhhccceeEEecC
Confidence 3457776654 44444444543 4788999999854 4578998864 4455554444444344444433
No 10
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=19.62 E-value=1.2e+02 Score=29.31 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhccCC--Cccc
Q 011933 49 VAYYLLHRWREKIRNST--PLHV 69 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~--~~~~ 69 (474)
+.+-++.-|||-+|.+| |+|-
T Consensus 50 ~~~~~~~W~~dv~~e~~~~g~ht 72 (261)
T 1v54_C 50 NMLTMYQWWRDVIRESTFQGHHT 72 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhccccccccccCCCCc
Confidence 33444555699999996 7774
Done!