Query 011934
Match_columns 474
No_of_seqs 138 out of 513
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05341 homogentisate 1,2-dio 100.0 5E-172 1E-176 1321.8 36.7 428 18-453 6-437 (438)
2 PLN02658 homogentisate 1,2-dio 100.0 2E-171 3E-176 1317.1 36.1 424 26-453 1-433 (435)
3 TIGR01015 hmgA homogentisate 1 100.0 6E-171 1E-175 1310.9 36.0 421 24-449 2-429 (429)
4 KOG1417 Homogentisate 1,2-diox 100.0 1E-164 2E-169 1212.1 28.5 429 21-454 4-440 (446)
5 PF04209 HgmA: homogentisate 1 100.0 4E-164 8E-169 1265.2 24.2 419 25-449 1-424 (424)
6 COG3508 HmgA Homogentisate 1,2 100.0 1E-153 2E-158 1151.8 30.5 418 24-451 3-424 (427)
7 TIGR03037 anthran_nbaC 3-hydro 97.5 0.00028 6.1E-09 66.3 7.8 58 162-220 43-104 (159)
8 TIGR03404 bicupin_oxalic bicup 97.4 0.0028 6E-08 66.4 14.6 199 165-388 85-309 (367)
9 COG0662 {ManC} Mannose-6-phosp 97.4 0.00058 1.3E-08 60.8 7.4 76 144-222 36-111 (127)
10 PF07883 Cupin_2: Cupin domain 97.3 0.00081 1.8E-08 52.2 6.5 57 161-217 13-70 (71)
11 PRK13264 3-hydroxyanthranilate 97.0 0.0024 5.1E-08 61.1 8.0 57 163-220 50-110 (177)
12 smart00835 Cupin_1 Cupin. This 96.8 0.021 4.5E-07 51.6 12.0 59 161-219 45-110 (146)
13 PF02311 AraC_binding: AraC-li 96.5 0.014 3.1E-07 49.0 8.3 58 163-220 19-77 (136)
14 PRK11171 hypothetical protein; 96.4 0.034 7.3E-07 55.7 11.3 103 108-219 31-136 (266)
15 PF05899 Cupin_3: Protein of u 96.3 0.014 3.1E-07 47.6 6.7 59 146-207 7-66 (74)
16 COG1917 Uncharacterized conser 96.3 0.015 3.2E-07 51.3 7.3 46 163-208 59-105 (131)
17 PF06249 EutQ: Ethanolamine ut 96.2 0.0075 1.6E-07 56.5 5.0 61 146-209 77-137 (152)
18 PRK09943 DNA-binding transcrip 96.1 0.049 1.1E-06 51.0 10.0 58 162-219 123-181 (185)
19 PF03079 ARD: ARD/ARD' family; 95.7 0.024 5.1E-07 53.3 6.2 45 165-209 90-139 (157)
20 COG4766 EutQ Ethanolamine util 95.7 0.028 6E-07 53.0 6.4 50 166-216 117-166 (176)
21 TIGR03214 ura-cupin putative a 95.4 0.21 4.4E-06 50.1 12.0 56 164-219 77-133 (260)
22 PF00190 Cupin_1: Cupin; Inte 95.4 0.11 2.3E-06 46.9 9.1 80 144-225 32-126 (144)
23 TIGR03404 bicupin_oxalic bicup 95.0 0.27 5.9E-06 51.7 12.0 105 109-217 210-322 (367)
24 PRK10296 DNA-binding transcrip 95.0 0.12 2.5E-06 50.7 8.6 58 162-219 38-95 (278)
25 PRK15457 ethanolamine utilizat 94.8 0.078 1.7E-06 52.9 7.0 54 161-215 169-222 (233)
26 PRK04190 glucose-6-phosphate i 94.3 0.14 3.1E-06 49.4 7.2 70 165-237 95-170 (191)
27 PF01050 MannoseP_isomer: Mann 94.2 0.44 9.6E-06 44.4 10.2 59 161-220 78-136 (151)
28 TIGR01479 GMP_PMI mannose-1-ph 93.5 0.6 1.3E-05 50.4 11.0 56 162-217 392-448 (468)
29 COG3450 Predicted enzyme of th 92.9 0.92 2E-05 41.0 9.4 99 110-217 15-114 (116)
30 PRK13290 ectC L-ectoine syntha 92.3 1.4 3E-05 39.8 9.9 69 145-217 34-106 (125)
31 PRK11171 hypothetical protein; 91.6 1.6 3.4E-05 43.9 10.4 107 111-223 153-262 (266)
32 TIGR02297 HpaA 4-hydroxyphenyl 91.2 0.4 8.7E-06 46.9 5.7 51 167-218 44-94 (287)
33 PLN00212 glutelin; Provisional 91.0 1.4 3.1E-05 48.4 10.2 47 339-386 355-411 (493)
34 PF14525 AraC_binding_2: AraC- 91.0 1.3 2.9E-05 39.1 8.3 54 166-220 54-107 (172)
35 PF12973 Cupin_7: ChrR Cupin-l 90.8 0.61 1.3E-05 39.0 5.6 48 164-216 41-88 (91)
36 PRK15460 cpsB mannose-1-phosph 90.4 1.8 3.9E-05 47.3 10.3 60 162-222 401-460 (478)
37 PF12852 Cupin_6: Cupin 90.2 0.46 1E-05 44.1 4.9 40 167-206 35-76 (186)
38 COG2140 Thermophilic glucose-6 90.0 1.1 2.3E-05 44.3 7.3 57 163-220 99-160 (209)
39 PRK13502 transcriptional activ 89.5 0.82 1.8E-05 44.7 6.3 46 164-209 35-80 (282)
40 PRK00924 5-keto-4-deoxyuronate 89.1 1.9 4E-05 44.3 8.6 66 161-227 68-136 (276)
41 PF11699 CENP-C_C: Mif2/CENP-C 88.9 3.9 8.5E-05 34.9 9.1 59 159-217 25-84 (85)
42 PRK10572 DNA-binding transcrip 88.5 1.7 3.6E-05 42.9 7.6 67 126-207 23-89 (290)
43 PRK13501 transcriptional activ 87.9 1.1 2.3E-05 44.4 5.9 45 163-207 34-78 (290)
44 PRK13500 transcriptional activ 87.6 1.3 2.8E-05 44.7 6.4 45 163-207 64-108 (312)
45 COG1791 Uncharacterized conser 87.0 1.1 2.4E-05 43.2 5.0 42 166-211 103-144 (181)
46 PRK10371 DNA-binding transcrip 86.7 2.3 5E-05 42.9 7.6 62 145-209 27-88 (302)
47 COG3837 Uncharacterized conser 86.6 2.4 5.2E-05 40.4 7.0 75 143-219 41-117 (161)
48 PRK13503 transcriptional activ 86.1 1.1 2.4E-05 43.5 4.7 47 163-209 31-77 (278)
49 PF06052 3-HAO: 3-hydroxyanthr 84.8 3.2 7E-05 39.2 6.9 56 159-220 54-109 (151)
50 PRK09685 DNA-binding transcrip 83.3 3 6.5E-05 41.2 6.5 42 168-209 72-113 (302)
51 KOG2107 Uncharacterized conser 82.6 2.5 5.5E-05 40.6 5.3 55 165-219 91-154 (179)
52 PF04962 KduI: KduI/IolB famil 79.8 4.6 0.0001 40.9 6.4 56 164-220 44-108 (261)
53 COG4101 Predicted mannose-6-ph 79.7 12 0.00027 34.5 8.4 87 144-232 44-140 (142)
54 TIGR03214 ura-cupin putative a 77.5 18 0.00039 36.3 9.8 72 145-218 178-252 (260)
55 TIGR02451 anti_sig_ChrR anti-s 77.5 5.3 0.00011 39.1 5.9 72 146-226 129-201 (215)
56 KOG2757 Mannose-6-phosphate is 74.5 6.2 0.00013 42.2 5.8 55 161-215 347-402 (411)
57 TIGR00218 manA mannose-6-phosp 74.4 15 0.00032 37.5 8.4 60 144-206 233-293 (302)
58 PF02041 Auxin_BP: Auxin bindi 71.8 31 0.00067 33.0 9.1 91 128-219 25-127 (167)
59 COG4297 Uncharacterized protei 71.5 5.8 0.00012 37.4 4.2 43 163-205 60-105 (163)
60 PRK15186 AraC family transcrip 71.0 7 0.00015 40.0 5.2 40 169-208 40-80 (291)
61 TIGR03037 anthran_nbaC 3-hydro 69.2 6.6 0.00014 37.4 4.2 63 344-424 39-109 (159)
62 COG3257 GlxB Uncharacterized p 68.2 19 0.0004 36.4 7.2 77 125-219 59-136 (264)
63 PF06560 GPI: Glucose-6-phosph 66.8 20 0.00043 34.8 7.0 44 164-207 80-132 (182)
64 TIGR02272 gentisate_1_2 gentis 66.5 19 0.00041 38.0 7.3 46 162-207 265-310 (335)
65 PRK13264 3-hydroxyanthranilate 66.4 8.4 0.00018 37.3 4.3 59 349-424 49-115 (177)
66 PLN00212 glutelin; Provisional 65.7 17 0.00038 40.2 7.1 47 161-207 363-415 (493)
67 PF09313 DUF1971: Domain of un 63.3 34 0.00074 29.1 7.0 47 170-216 28-81 (82)
68 PF12219 End_tail_spike: Catal 61.9 9.5 0.00021 35.8 3.6 45 125-169 80-125 (160)
69 PRK15185 transcriptional regul 61.8 12 0.00025 39.1 4.7 40 169-208 51-90 (309)
70 PF06719 AraC_N: AraC-type tra 54.5 99 0.0021 28.4 9.1 69 149-220 7-80 (155)
71 PF02373 JmjC: JmjC domain, hy 54.2 12 0.00027 31.3 2.8 21 186-206 82-102 (114)
72 PLN02288 mannose-6-phosphate i 52.8 31 0.00067 37.1 6.2 59 144-203 332-392 (394)
73 PRK04190 glucose-6-phosphate i 51.4 41 0.00089 32.7 6.3 80 307-386 48-138 (191)
74 PRK15131 mannose-6-phosphate i 47.5 59 0.0013 34.8 7.3 58 145-205 320-378 (389)
75 PF05726 Pirin_C: Pirin C-term 45.3 62 0.0013 27.8 5.8 54 164-219 17-70 (104)
76 PF08007 Cupin_4: Cupin superf 40.6 36 0.00079 35.0 4.3 24 186-209 177-200 (319)
77 PF04773 FecR: FecR protein; 39.4 1.6E+02 0.0035 23.8 7.3 49 170-218 41-94 (98)
78 PF05962 HutD: HutD; InterPro 38.1 61 0.0013 31.1 5.1 56 161-219 129-184 (184)
79 COG1482 ManA Phosphomannose is 36.2 1.4E+02 0.003 31.5 7.7 60 144-206 240-300 (312)
80 COG1482 ManA Phosphomannose is 36.0 33 0.00071 36.0 3.1 35 182-222 155-189 (312)
81 PF09092 Lyase_N: Lyase, N ter 35.2 15 0.00032 35.6 0.5 53 278-336 111-164 (178)
82 PF07385 DUF1498: Protein of u 34.6 2.1E+02 0.0046 28.9 8.3 67 147-220 121-187 (225)
83 PF06865 DUF1255: Protein of u 31.7 1.9E+02 0.0042 25.5 6.7 56 161-218 35-92 (94)
84 cd00214 Calpain_III Calpain, s 31.4 67 0.0015 29.3 4.1 20 179-198 105-124 (150)
85 PF13621 Cupin_8: Cupin-like d 30.9 47 0.001 31.3 3.1 23 186-208 210-232 (251)
86 KOG3995 3-hydroxyanthranilate 29.0 96 0.0021 31.4 4.9 74 132-219 34-108 (279)
87 KOG4600 Mitochondrial ribosoma 26.9 37 0.00079 31.9 1.5 21 184-204 53-73 (144)
88 COG3822 ABC-type sugar transpo 26.3 1.7E+02 0.0036 29.3 5.9 50 169-220 137-186 (225)
89 PF02237 BPL_C: Biotin protein 25.0 73 0.0016 23.9 2.6 25 172-196 22-47 (48)
90 TIGR00062 L27 ribosomal protei 24.9 56 0.0012 28.2 2.2 21 184-204 26-46 (83)
91 COG3718 IolB Uncharacterized e 24.7 2.9E+02 0.0062 28.5 7.4 73 145-221 30-112 (270)
92 KOG4046 RNase MRP and P, subun 23.9 80 0.0017 31.8 3.3 50 174-226 153-204 (224)
93 PRK13855 type IV secretion sys 23.6 1.1E+02 0.0023 33.2 4.4 49 191-242 216-278 (376)
94 PF06172 Cupin_5: Cupin superf 22.9 4.7E+02 0.01 24.2 8.0 77 143-220 38-126 (139)
95 PRK05435 rpmA 50S ribosomal pr 22.8 64 0.0014 27.8 2.1 21 184-204 26-46 (82)
96 TIGR00218 manA mannose-6-phosp 22.4 58 0.0013 33.2 2.2 34 182-221 148-181 (302)
97 PF00190 Cupin_1: Cupin; Inte 22.2 18 0.0004 32.4 -1.3 68 339-422 41-124 (144)
98 CHL00121 rpl27 ribosomal prote 21.7 71 0.0015 27.8 2.2 21 184-204 26-46 (86)
99 cd07557 trimeric_dUTPase Trime 21.6 3.2E+02 0.007 22.3 6.1 21 185-205 12-32 (92)
100 smart00538 POP4 A domain found 21.1 3.5E+02 0.0075 23.4 6.3 29 194-226 50-79 (92)
101 PRK15044 transcriptional regul 20.9 2.5E+02 0.0054 29.4 6.3 52 169-220 42-96 (295)
No 1
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=100.00 E-value=4.8e-172 Score=1321.83 Aligned_cols=428 Identities=58% Similarity=1.060 Sum_probs=409.4
Q ss_pred CCCCCCCcccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCC
Q 011934 18 GEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPA 93 (474)
Q Consensus 18 ~~~~~~~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~ 93 (474)
+...+++.||+||||+|+|||||||||+||||||||+||||||||||||||+||++|+| ||||||+|++|++++..
T Consensus 6 ~~~~~~~~Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapr~~n~rswlYRirPs~~h~~f~~~~~~ 85 (438)
T PRK05341 6 PSAANTLGYQSGFGNEFATEALPGALPVGQNSPQRAPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPSVVHGPFEPVDSR 85 (438)
T ss_pred cCCCCCcccccccCCcccccccCCCCCCCCCCcccCCcccchhhccCccccCcCccccceeEEeechhhcCCCccccccc
Confidence 34456799999999999999999999999999999999999999999999999999999 99999999999988731
Q ss_pred CCCccccCCCCCCCCCCCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEE
Q 011934 94 HGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP 173 (474)
Q Consensus 94 ~~~~~~~~~~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~p 173 (474)
.+.. +... +.+||||||+|+++|++++|||+||+|||||||+++|+|++||+|+||+||.+++|+|+||||||||
T Consensus 86 --~~~~-~~~~--~~~p~q~rW~P~~~p~~~~Dfv~gl~tl~gngD~~~~~G~ai~~y~~n~sM~~~~f~NaDGD~Livp 160 (438)
T PRK05341 86 --LWRT-FDEV--PTPPNQLRWDPLPLPAEPTDFVDGLVTMAGNGDAEAQAGMAIHLYAANRSMQDRYFYNADGELLIVP 160 (438)
T ss_pred --cccc-cccc--CCCccccccCCCCCCCCCCCchhhhhhhhcCCCcccccccEEEEEeCCCCcccceeecCCCCEEEEE
Confidence 1111 1234 6899999999999998899999999999999999999999999999999998889999999999999
Q ss_pred EeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCccccccc
Q 011934 174 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEG 253 (474)
Q Consensus 174 q~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~ 253 (474)
|+|+|+|+||||+|+|+|||||||||||+|||++++|++||||||++++||+||||||||+|||||+|||++|+|+|||.
T Consensus 161 q~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~LPdlGpiG~nglanpRDF~~P~a~~ed~ 240 (438)
T PRK05341 161 QQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFRLPDLGPIGANGLANPRDFLTPVAAFEDR 240 (438)
T ss_pred EeCCEEEEEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCcccCCCCCcccccCCCChhHcCCCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeee
Q 011934 254 SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIF 333 (474)
Q Consensus 254 ~~~~~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF 333 (474)
+++|+|++|++|+||+++|+||||||||||||||||||||+||+|||||++||+||||||||||||++||+|+||||||
T Consensus 241 -~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF 319 (438)
T PRK05341 241 -EGPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTPGTANIDFVIF 319 (438)
T ss_pred -CCCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeeccccccccCCCCceEEEeccCCCCCccccceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceecccee
Q 011934 334 PPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMA 413 (474)
Q Consensus 334 ~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lA 413 (474)
+|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ +|+|+|+++|||
T Consensus 320 ~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~pHGPd~~a~e~a~~~--~l~p~k~~~~lA 397 (438)
T PRK05341 320 PPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAKAEGFVPGGASLHNCMSPHGPDAETFEKASNA--DLKPHKIDNTMA 397 (438)
T ss_pred CCcccCCCCccCCCCCccchhhhhhhhccccccccccCcCCCeeeecCCCCCCCCCHHHHHHhhcc--ccCCccccceEE
Confidence 999999999999999999999999999999999998899999999999999999999999999999 999999999999
Q ss_pred EEeeeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCc
Q 011934 414 FMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 453 (474)
Q Consensus 414 fMfET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 453 (474)
|||||+++|++|+||++++.+|++|++||++|+++|+++.
T Consensus 398 fMfET~~~l~~t~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 437 (438)
T PRK05341 398 FMFETRYPIRPTRFALETPQLQADYDDCWQGLKKHFDPER 437 (438)
T ss_pred EEEEccccccccHHHHhCccccccHHHHHHhHhhcCCCCC
Confidence 9999999999999999987789999999999999997643
No 2
>PLN02658 homogentisate 1,2-dioxygenase
Probab=100.00 E-value=1.6e-171 Score=1317.09 Aligned_cols=424 Identities=84% Similarity=1.485 Sum_probs=404.3
Q ss_pred ccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCCCCccccC
Q 011934 26 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGKLVSEF 101 (474)
Q Consensus 26 Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~~~~~~~~ 101 (474)
||+||||+|+|||||||||+||||||||+||||||||||||||+||++|+| ||||||+|++|++++.+.......+
T Consensus 1 Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlYRirPs~~h~~f~~~~~~~~~~~~~~ 80 (435)
T PLN02658 1 YQSGFGNHFSSEALPGALPRGQNNPLLCPYGLYAEQLSGTAFTAPRKLNRRSWLYRIKPSVTHEPFKPRVPAHEKLVGEF 80 (435)
T ss_pred CCCccCCcccccccCCCCCCCCCCcccCCcccchhhccCccccCccccccceeEEeecccccCCCcccCCcccccccCCc
Confidence 999999999999999999999999999999999999999999999999999 9999999999998874211222222
Q ss_pred C---CCCCCCCCCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcE
Q 011934 102 D---KSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRL 178 (474)
Q Consensus 102 ~---~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l 178 (474)
. .. +.+||||||+|+++|++.+|||+||+|||||||+++|+|++||+|+||+||.+++|+|+|||+|||||+|+|
T Consensus 81 ~~~~~~--~~~p~qlrW~P~~~p~~~~Dfv~gl~tl~gngD~~~~~G~ai~iy~~n~sM~~~~f~NaDGD~Livpq~G~l 158 (435)
T PLN02658 81 DPSNSC--ETTPTQLRWRPFPVPDSPVDFVDGLFTVCGAGSPFLRHGYAIHMYVANKSMDDCAFCNADGDFLIVPQQGRL 158 (435)
T ss_pred cccccc--CCCccccccCCCCCCcCCCCchhhhhhhhcCCCcccccCcEEEEEeCCCCCccceeecCCCCEEEEEEeCCE
Confidence 1 12 478999999999999888999999999999999999999999999999999888999999999999999999
Q ss_pred EEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccE
Q 011934 179 WIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGY 258 (474)
Q Consensus 179 ~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~ 258 (474)
+|+||||+|+|+|||||||||||+|||++++|++||||||++|+||+||||||||+|||||+|||++|+|+||+.+.++|
T Consensus 159 ~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g~~f~LPdlGpiG~nglanpRDF~~P~a~~ed~~~~~~ 238 (435)
T PLN02658 159 WIKTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFGGHFQLPDLGPIGANGLANPRDFLHPVAWFEDGSRPGY 238 (435)
T ss_pred EEEEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEeecCCcccCCCCCcccccCCCCHhHccCCccccccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998755679
Q ss_pred EEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCccc
Q 011934 259 TIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWL 338 (474)
Q Consensus 259 ~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF~PRw~ 338 (474)
+|++|++|+||+++|+||||||||||||||||||||+||+||||+++||+||||||||||||++||+|+||||||+|||+
T Consensus 239 ~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~ 318 (435)
T PLN02658 239 TIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLFDHADPSINTVLTAPTDKPGVALADFVIFPPRWL 318 (435)
T ss_pred EEEEEeCCeeEEEecCCCCceEeeecCcccceEechHHceeccccccccCCCCceEEEeccCCCCCccccceEEECCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCC--CCceeccceeEEe
Q 011934 339 VAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEA--GPYKITDTMAFMF 416 (474)
Q Consensus 339 ~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l--~P~~~~~~lAfMf 416 (474)
++++||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ +| +|+|+++||||||
T Consensus 319 vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~pHGPd~~~~e~a~~~--~~~~~p~k~~~~lAfMf 396 (435)
T PLN02658 319 VAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLHSCMTPHGPDTATYEATIAR--PCADAPSKLTGTLAFMF 396 (435)
T ss_pred cccCccCCCCCccchhhhhhhhcccccccccCCccCCeeeecCCCCCCCCCHHHHHhhhcc--cccCCCeeccceEEEEE
Confidence 9999999999999999999999999999998889999999999999999999999999998 77 9999999999999
Q ss_pred eeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCc
Q 011934 417 ESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE 453 (474)
Q Consensus 417 ET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 453 (474)
||+++|++|+||++++.+|++|++||++|+++|+++.
T Consensus 397 Et~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~ 433 (435)
T PLN02658 397 ESSLIPRVCPWALESPFRDRDYYQCWIGLKSHFSRED 433 (435)
T ss_pred EccccccccHHHHhCccccchHHHHHHHHhhcCCccc
Confidence 9999999999999987789999999999999997654
No 3
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=100.00 E-value=6.3e-171 Score=1310.87 Aligned_cols=421 Identities=61% Similarity=1.110 Sum_probs=400.5
Q ss_pred CcccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCCCCccc
Q 011934 24 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGKLVS 99 (474)
Q Consensus 24 ~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~~~~~~ 99 (474)
+.||+||||+|+|||||||||+||||||||+||||||||||||||+||++|+| ||||||+|++|++++.+......
T Consensus 2 ~~Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlYRirPs~~h~~f~~~~~~~~~~~~ 81 (429)
T TIGR01015 2 LKYLSGFGNEFESERVPGALPVGQNSPQKCPYGLYAEQLSGSAFTAPRHENKRSWLYRIRPSAAHEPFEPRDGNPGHVTA 81 (429)
T ss_pred CccccccCCcccccccCCCCCCCCCCcccCCCccchhhccCccccCCcccCccceeeeechhhcCCCccccccccccccC
Confidence 67999999999999999999999999999999999999999999999999999 99999999999987632222223
Q ss_pred cCCCCCCCCCCCccccCCCCCCC-CCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcE
Q 011934 100 EFDKSNSYTTPTQLRWKPVDIPD-SPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRL 178 (474)
Q Consensus 100 ~~~~~~~~~~P~~lrW~p~~~p~-~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l 178 (474)
.+... +.+||||||+|+++|+ +++|||+||+|||||||+++|+|++||+|+||+||.+++|+|+|||+|||||+|+|
T Consensus 82 ~~~~~--~~~p~qlrW~P~~~p~~~~~Dfv~gl~tl~gngD~~~~~G~ai~iy~~~~sM~~~~f~NaDGD~Livpq~G~l 159 (429)
T TIGR01015 82 NFDEQ--APDPNQLRWSPFPIPSDEAVDFVDGLHTLCGAGDATSRTGLAIHIYLCNASMENRAFYNADGDFLIVPQQGAL 159 (429)
T ss_pred Ccccc--CCCccccccCCCCCCCccCCCchhhhhhhhcCCChhhccCceEEEEeCCCCcccceeeccCCCEEEEEEeCcE
Confidence 33334 6799999999999996 78999999999999999999999999999999999888999999999999999999
Q ss_pred EEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccc-ccc
Q 011934 179 WIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGS-RLG 257 (474)
Q Consensus 179 ~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~-~~~ 257 (474)
+|+||||+|+|+|||||||||||+|||+++ +++||||||++++||+||||||||+|||||+|||++|+|+|||++ .++
T Consensus 160 ~i~TEfG~L~v~pgei~VIPRG~~frv~l~-gp~rgyi~E~~g~~f~LPdlGpiG~nglan~RDF~~P~a~fed~~~~~~ 238 (429)
T TIGR01015 160 LITTEFGRLLVEPNEICVIPRGVRFRVTVL-EPARGYICEVYGAHFQLPDLGPIGANGLANPRDFEAPVAAFEDREVPGP 238 (429)
T ss_pred EEEEeccceEecCCCEEEecCccEEEEeeC-CCceEEEEeccCCcccCCCCCcccccCCCCHHHcCCCccchhccccCCC
Confidence 999999999999999999999999999995 799999999999999999999999999999999999999998752 248
Q ss_pred EEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcc
Q 011934 258 YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRW 337 (474)
Q Consensus 258 ~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF~PRw 337 (474)
|+|++|++|+||+++|+||||||||||||||||||||+||+|||||++||+||||||||||||++|||||||||||+|||
T Consensus 239 ~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~av~dFviFpPRw 318 (429)
T TIGR01015 239 YTVINKFQGSLFAAKQDHSPFDVVAWHGNYVPYKYDLKRFNVINSVSFDHPDPSIFTVLTAPSDRPGTAIADFVIFPPRW 318 (429)
T ss_pred eEEEEEeCCeeEEEecCCCCcceeeecCcccceEeehhheeeccccccccCCCCceEEEeccCCCCCceEEEEEeeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCcee-ccceeEEe
Q 011934 338 LVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDTMAFMF 416 (474)
Q Consensus 338 ~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~-~~~lAfMf 416 (474)
+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++ +++|+++ +++|||||
T Consensus 319 ~vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SlH~~~~pHGPd~~~~e~a~~~--~l~p~~~~e~tlAfMf 396 (429)
T TIGR01015 319 LVAEKTFRPPYYHRNCMSEFMGLITGAYDAKEGGFVPGGGSLHNMMTPHGPDFDCFEKASNA--KLKPERIADGTMAFMF 396 (429)
T ss_pred cCCCCccCCCCCccchhhhhhhhcccccccccCCcCCCeeeecCCCCCCCCCHHHHHHhhcc--ccCceEecCceEEEEE
Confidence 99999999999999999999999999999998889999999999999999999999999999 9999998 47899999
Q ss_pred eeccCcccchhhhcCCCCChhhhhchhhhhcCC
Q 011934 417 ESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 449 (474)
Q Consensus 417 ET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f 449 (474)
||+++|++|+||++++.+|++|++||++|+++|
T Consensus 397 Et~~~l~~t~~A~~~~~~~~~Y~~~W~~l~~~f 429 (429)
T TIGR01015 397 ESSLSLAVTKWGATCQKLQEDYYKCWQPLKRHF 429 (429)
T ss_pred EccccccccHHHhhCccccccHHHHhhhhccCC
Confidence 999999999999998778999999999999987
No 4
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-165 Score=1212.08 Aligned_cols=429 Identities=70% Similarity=1.226 Sum_probs=414.4
Q ss_pred CCCCcccccCCCcccc--cccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCC
Q 011934 21 FSDLNYESGFGNSFSS--EAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAH 94 (474)
Q Consensus 21 ~~~~~Y~~Gfgn~~~s--Ea~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~ 94 (474)
.++++|++||||+|+| |++||+||.||||||.|+|||||||||||+||+||++|+| ||+|||+|.||++...++
T Consensus 4 ~~ElKY~sGFGn~~ssed~r~p~aLP~gQNsPq~Cpy~LYAEQlSGtaFT~PRs~N~RsWLYRi~PSv~H~PF~~~~~~~ 83 (446)
T KOG1417|consen 4 MEELKYLSGFGNHFSSEDERIPGALPVGQNSPQVCPYGLYAEQLSGTAFTAPRSLNQRSWLYRILPSVTHEPFEPRKPAH 83 (446)
T ss_pred HhhhhhhhcccccccccCccCCCCCcCCCCCCccCCchhhHhhccCceecCCccccchhheeeeccccccCCCccCCchh
Confidence 4679999999999999 7899999999999999999999999999999999999999 999999999999987655
Q ss_pred CCccccCCCCCCCCCCCccccCCCCCC-CCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEE
Q 011934 95 GKLVSEFDKSNSYTTPTQLRWKPVDIP-DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP 173 (474)
Q Consensus 95 ~~~~~~~~~~~~~~~P~~lrW~p~~~p-~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~p 173 (474)
..++..+++. +..||||||+|++|| .+++|||+||.||||+||+.+|+|+|||+|.||.+|++++|+|+|||+||||
T Consensus 84 ~~~t~n~d~~--~pnPnQlRW~Pf~iP~~~~v~FVdgL~TvCGaGd~~sr~GlAIH~~~cN~sM~~safyNsDGDFLiVP 161 (446)
T KOG1417|consen 84 KHLTSNFDES--PPNPNQLRWKPFDIPTDKEVDFVDGLHTVCGAGDSFSRHGLAIHIYSCNTSMENSAFYNSDGDFLIVP 161 (446)
T ss_pred hhhhcccccC--CCCccccccCCCCCCCcCccchhcccceeccCCCcccccceEEEEEeecCCcccceeecCCCCEEEec
Confidence 5666666666 889999999999999 7889999999999999999999999999999999999999999999999999
Q ss_pred EeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCccccccc
Q 011934 174 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEG 253 (474)
Q Consensus 174 q~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~ 253 (474)
|+|.|.|+||||+|.|.|+||||||+||+|+|+++ |++||||+|+||.||+||||||||+|||||+|||++|+|||||+
T Consensus 162 Q~G~L~I~TEfGrllV~P~EI~VIpqG~RFsi~v~-~~sRGYilEvYg~HF~LPDLGPIGANGLAnpRDF~~PvAWfeD~ 240 (446)
T KOG1417|consen 162 QQGRLWITTEFGRLLVTPNEIAVIPQGIRFSIDVP-GPSRGYILEVYGAHFQLPDLGPIGANGLANPRDFLAPVAWFEDR 240 (446)
T ss_pred ccCcEEEEeeccceeecccceEEeecccEEEEecC-CCCcceEEEEecceeecCCCCcccccccCCchhcccchhhhhcc
Confidence 99999999999999999999999999999999994 89999999999999999999999999999999999999999997
Q ss_pred ccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeee
Q 011934 254 SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIF 333 (474)
Q Consensus 254 ~~~~~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF 333 (474)
..-+|+||.|++|++|.++|+|||||||||||||+||||||.+|++||+|++||.||||||||||||..||+|++|||||
T Consensus 241 ~vpeytii~K~qG~lF~AKQ~~spF~VVaWHGNYvPyKYdLkkFmviNtV~fDH~DPSIfTVLTaps~k~G~AiaDFVIF 320 (446)
T KOG1417|consen 241 LVPEYTIINKFQGELFTAKQDHSPFNVVAWHGNYVPYKYDLKKFMVINTVSFDHCDPSIFTVLTAPSVKPGVAIADFVIF 320 (446)
T ss_pred CCccceeeecccceeEEeccCCCcceEEEecCcccccccchhheeEEeeEecccCCCcceeEEecCCCCCCcEEeeeEEe
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCcee-ccce
Q 011934 334 PPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDTM 412 (474)
Q Consensus 334 ~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~-~~~l 412 (474)
||||.++++|||||||||||||||||+|+|.|+||.+||.|||+|||++|+|||||..+||+|+++ +|.|.++ +++|
T Consensus 321 PPRW~vae~TFRPPYYHRNCMSEfMGLI~G~YEAK~~GF~pGG~sLHS~MTPHGPD~~cfE~as~~--~l~p~rva~GTm 398 (446)
T KOG1417|consen 321 PPRWGVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKEDGFLPGGASLHSMMTPHGPDTTCFEAASNV--KLMPERVAEGTM 398 (446)
T ss_pred CCcccccccccCCchhhhhHHHHHHHHhhhhhhhcccCcCCCCcchhhcccCCCCCchHHHHhhhc--ccCchhhcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999 9999
Q ss_pred eEEeeeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCcc
Q 011934 413 AFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEA 454 (474)
Q Consensus 413 AfMfET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~~ 454 (474)
||||||+..|.+|+|+++++.+|+||++||+.|++||....+
T Consensus 399 aFMFESsL~~avt~Wg~~~~~lD~~Yy~cW~~LK~hFt~~s~ 440 (446)
T KOG1417|consen 399 AFMFESSLSLAVTKWGLESQFLDHDYYKCWQPLKSHFTRISK 440 (446)
T ss_pred eeeehhhhhHHHhhhhhhcccccHHHHHHHHHHHhhCccccC
Confidence 999999999999999999999999999999999999987533
No 5
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=100.00 E-value=3.5e-164 Score=1265.17 Aligned_cols=419 Identities=60% Similarity=1.076 Sum_probs=272.7
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCCCCcccc
Q 011934 25 NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGKLVSE 100 (474)
Q Consensus 25 ~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~~~~~~~ 100 (474)
+||+||||+|+|||+|||||+|||+||||+|||||||||||+||+||++|+| |||||++|.+|+++..+.......
T Consensus 1 ~y~~gfgn~~~sea~pgalP~~~n~pq~~~~gLYaEqLsGt~Ftapr~~n~~swlYri~Ps~~~~~~~~~~~~~~~~~~~ 80 (424)
T PF04209_consen 1 EYQSGFGNEFESEALPGALPKGQNSPQKCPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPSVAHGPFRPWEDNPQWFTAP 80 (424)
T ss_dssp -EEE-TT--EEETTSTT-S-SS-S--SS-GGG-EEEEEESS-TTS-GGG--EEEEEESS-TT-S---EE-----TB----
T ss_pred CccccCCCCccccccCCCCCCCCCCCCcCCCccchheeccccccCCCccccceeeecccCceeeccccccccccccccCC
Confidence 5999999999999999999999999999999999999999999999999999 999999999998877432233344
Q ss_pred CCCCCCCCCCCccccCCCCCC-CCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEE
Q 011934 101 FDKSNSYTTPTQLRWKPVDIP-DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLW 179 (474)
Q Consensus 101 ~~~~~~~~~P~~lrW~p~~~p-~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~ 179 (474)
+.+. +.+|+||||+|+++| ..++|||+||+||+||||+.+|+|++||+|+||+||.+++|||+|||||||||+|+|+
T Consensus 81 ~~~~--~~~p~~lrw~p~~~p~~~~~dfvdgl~ti~g~gd~~~~~g~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~ 158 (424)
T PF04209_consen 81 FSEW--HPTPNQLRWDPFPIPSDEPTDFVDGLRTIAGAGDPLSNNGVAIHVYAANASMDDRAFRNADGDELIFPQQGSLR 158 (424)
T ss_dssp CCCS------S-EEE-S----TT----TTTTEEEEEEECECCCTEEEEEEEEEE-S---SEEEEESSEEEEEEEEES-EE
T ss_pred cccc--CCCccccccCCCCCCCcCCCCccccccccccCccccccCCcEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEE
Confidence 4444 678999999999999 7889999999999999999999999999999999998889999999999999999999
Q ss_pred EEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccEE
Q 011934 180 IATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYT 259 (474)
Q Consensus 180 l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~~ 259 (474)
|+||||+|+|+|||||||||||+|||+++ |++||||||++++||+|||+||||+|||||+|||++|+|+|+|+ +++|+
T Consensus 159 l~Te~G~L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E~~~~~~~lPe~G~iG~ngla~~RDf~~P~a~~~d~-~~~~~ 236 (424)
T PF04209_consen 159 LETEFGRLDVRPGDYVVIPRGTRFRVELP-GPARGYIIENFGSHFRLPELGPIGANGLANPRDFRTPVAAFEDD-EGEWE 236 (424)
T ss_dssp EEETTEEEEE-TTEEEEE-TT--EEEE-S-SSEEEEEEEEES--EE----GGGTTS-BS-GGGEEEE--------EEEEE
T ss_pred EEecCeeEEEcCCeEEEECCeeEEEEEeC-CCceEEEEEcCCCeEEecCcCccccCCCCChhhhcCCCcccccC-CCCEE
Confidence 99999999999999999999999999997 99999999999999999999999999999999999999999986 67999
Q ss_pred EEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcccc
Q 011934 260 IVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLV 339 (474)
Q Consensus 260 Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF~PRw~~ 339 (474)
|++|++|++|+++|+||||||||||||||||||||+||+||||++|||+||||||||||||+.|||||||||||+|||++
T Consensus 237 v~~K~~G~l~~~~~~hsPfDVVgW~Gn~~Pykynl~~F~pi~s~~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v 316 (424)
T PF04209_consen 237 VVVKFRGGLFSATYPHSPFDVVGWHGNYYPYKYNLRDFEPINSVSYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLV 316 (424)
T ss_dssp EEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE-
T ss_pred EEEEECCeeEEEEeCCCchheeeecCccccEEEehHHhhhhcceecccCCCceeEEEeccCCCCCceEEEEEeeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEeeec
Q 011934 340 AEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESC 419 (474)
Q Consensus 340 ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMfET~ 419 (474)
+++||||||||||||||+||||+|+|++|++||.|||+||||+|+|||||++++|+|+++ +++|++++++|||||||+
T Consensus 317 ~e~tfrpPyyHrNv~sE~mg~i~G~y~a~~~gf~pGg~SLH~~~~pHGP~~~~~e~A~~~--~l~p~~~~e~lAfM~eT~ 394 (424)
T PF04209_consen 317 AEHTFRPPYYHRNVMSEFMGLIRGNYDASRDGFEPGGISLHPCGTPHGPDPGAFEKASEA--ELKPEKTDETLAFMFETR 394 (424)
T ss_dssp -TTS--S---B--SSEEEEEEEE-----------TT-EEEE-TT--B---HHHHHHHHHS------EEEST-EEEEEEES
T ss_pred cCCCccCCCCCcceeeeeeeeeccccccccCCcCCCceeccCCCCCCCCChHHhhhhhhc--cCCceEeccceEEEEecc
Confidence 999999999999999999999999999988999999999999999999999999999999 999999855799999999
Q ss_pred cCcccchhhhcCCCCChhhhhchhhhhcCC
Q 011934 420 LIPRICPWALESPFMDHDYYRCWIGLRSHF 449 (474)
Q Consensus 420 ~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f 449 (474)
+||++|+||++++.+|++|++||++|+++|
T Consensus 395 ~pl~~t~~A~~~~~~d~~Y~~~W~~l~~~F 424 (424)
T PF04209_consen 395 RPLRVTEWALECEKLDPDYADSWQGLKKHF 424 (424)
T ss_dssp S--EE-HHHHH-------------------
T ss_pred ccccccHHHHhCccccccHHHHHhhHhccC
Confidence 999999999999888999999999999998
No 6
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.6e-154 Score=1151.75 Aligned_cols=418 Identities=56% Similarity=0.987 Sum_probs=402.8
Q ss_pred CcccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCCCCccc
Q 011934 24 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGKLVS 99 (474)
Q Consensus 24 ~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~~~~~~ 99 (474)
..||+||||.|++|++||+||++||+|||++|||||||||||+||+||++|+| |||||+.|.+|++... ..|.+
T Consensus 3 ~~y~~gfg~~F~te~~pgalp~g~nspq~~~yglyaEqlsGs~ftapr~~n~rswlYri~ps~~h~~fr~~~~--~~w~s 80 (427)
T COG3508 3 ARYQSGFGNVFETEALPGALPVGQNSPQKAPYGLYAEQLSGSAFTAPRGENRRSWLYRIRPSANHPTFRPMKL--GEWKS 80 (427)
T ss_pred ccccccCCccccccccCCccccccCCcccccchhhHHHhcCCcccccccccccceeeeeccccCCCccCccch--hhhcc
Confidence 35999999999999999999999999999999999999999999999999999 9999999998999874 34434
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEE
Q 011934 100 EFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLW 179 (474)
Q Consensus 100 ~~~~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~ 179 (474)
..... ..+|||+||+|+++|+..+||++||.+|++|||+..+.|++||+|.+|++|.+++|||||||+|||||+|+++
T Consensus 81 ~~~~~--~a~~~~~rwspl~~p~a~tdFldgi~~~~~~~~~~~~~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~ 158 (427)
T COG3508 81 ALIGP--WATPNQLRWSPLPLPKAPTDFLDGILLIANNGDADTQDGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELR 158 (427)
T ss_pred cCCCc--cccccccccCccccccCccHHHHHHHHhhcCCCccccCceEEEEEEccccchhhhhhcCCCCEEEEeecceEE
Confidence 33222 4689999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCcccccccccccEE
Q 011934 180 IATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYT 259 (474)
Q Consensus 180 l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~~~~~~~ 259 (474)
|.||+|.|+|+||||+||||||+|||++.++++|||+||+++..|+|||+||||+|||||||||++|+|+|+|. +++++
T Consensus 159 l~te~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~En~ga~~~lpe~G~ig~n~lanpRDf~tPvar~ed~-e~~~q 237 (427)
T COG3508 159 LKTELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCENYGAKFRLPELGPIGANGLANPRDFKTPVARYEDS-EGPTQ 237 (427)
T ss_pred EEEeeceEEecCCcEEEeeCCceEEEEecCCceEEEEEeecccccccccccccccccccChhhccCceeeeccc-CCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 78999
Q ss_pred EEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeeeCCcccc
Q 011934 260 IVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLV 339 (474)
Q Consensus 260 Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF~PRw~~ 339 (474)
|++|+.|+||.++.+|||||||||||||+||||||++|+|||+++|||+|||||||||+||++||||+||||||||||++
T Consensus 238 lvvK~~g~l~~~e~~hsPlDVVaWhGnl~Pykydl~~f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~ 317 (427)
T COG3508 238 LVVKTHGGLWAVELDHSPLDVVAWHGNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLV 317 (427)
T ss_pred EEEEecCcEEEEecCCCCceeEeecCcccceEeeeeccccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEeeec
Q 011934 340 AEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESC 419 (474)
Q Consensus 340 ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMfET~ 419 (474)
+|+||||||||||+||||||||+|+||||.+||.|||+|||+||+.||||+++||||+++ +|+|+|+++||||||||+
T Consensus 318 ~e~tfrppwyHrN~~sEfmgli~G~ydak~~GfvpGg~sLH~~m~~HGPd~~afeka~~~--~l~p~k~d~tmAfMfETr 395 (427)
T COG3508 318 AEQTFRPPWYHRNDMSEFMGLISGQYDAKAEGFVPGGASLHNCMSAHGPDPSAFEKALNA--RLKPHKIDDTMAFMFETR 395 (427)
T ss_pred cccccCCCceecchHHHHHhHhhchhhhhccCcCcCcceecccccccCCChHHHHHhhhc--ccCcccccceEEEEEEec
Confidence 999999999999999999999999999998899999999999999999999999999999 999999999999999999
Q ss_pred cCcccchhhhcCCCCChhhhhchhhhhcCCCC
Q 011934 420 LIPRICPWALESPFMDHDYYRCWIGLRSHFSY 451 (474)
Q Consensus 420 ~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~ 451 (474)
.++++|.+|++.+.+|.||..||+++ |++
T Consensus 396 ~~~~~s~~A~E~~~~Q~~Y~~cW~~l---f~~ 424 (427)
T COG3508 396 KVLRPSRYAAEIDALQDDYDACWQGL---FNK 424 (427)
T ss_pred cccchhHHhhhhcccccchhhhhhhc---ccc
Confidence 99999999999988999999999998 654
No 7
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.54 E-value=0.00028 Score=66.34 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=50.5
Q ss_pred eecCCCCEEEEEEeCcEEEEeece----eeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 162 FCNADGDFLVVPQKGRLWIATECG----KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG----~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
|-..++||+++..+|++.|+..-+ .+.+++||+++||+|+.++... .+.+.++++|--
T Consensus 43 ~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r-~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR-PAGSIGLVIERK 104 (159)
T ss_pred cccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc-CCCcEEEEEEeC
Confidence 344569999999999999976664 8999999999999999999976 567999999975
No 8
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.44 E-value=0.0028 Score=66.41 Aligned_cols=199 Identities=20% Similarity=0.226 Sum_probs=110.6
Q ss_pred CCCCEEEEEEeCcEEEEee--ceeee---ecCCcEEEEcceeEEEEECCCCCeeEEEEEEcC-CeeeeCCCCCCCCCCCC
Q 011934 165 ADGDFLVVPQKGRLWIATE--CGKLE---VSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG-THFQLPDLGPIGANGLA 238 (474)
Q Consensus 165 aDGDeLi~pq~G~l~l~TE--fG~L~---v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~-~~~~LPelGpiG~ngla 238 (474)
..++|++|+.+|++++.-. -|+.. +++||+++||+|+.+++.-.+..++.++ ++. +.|.-++. ++....++
T Consensus 85 H~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~--vf~~~~f~~~~~-~~~~~~l~ 161 (367)
T TIGR03404 85 HKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLL--VFDDGNFSEDGT-FLVTDWLA 161 (367)
T ss_pred CCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEE--EeCCcccCCcce-eeHHHHHH
Confidence 4678999999999998874 57665 9999999999999999876555555333 332 22433331 11222222
Q ss_pred -CCCCcc-----CCccccccc-ccccEEEEEEECCceEEEEcCCCCCeEeeecCC-ccceeeccCCcccccccccccCCC
Q 011934 239 -APRDFL-----VPTAWFEEG-SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGN-YVPYKYDLSKFCPFNTVLVDHGDP 310 (474)
Q Consensus 239 -n~RDf~-----~P~a~~e~~-~~~~~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn-~~Pykydl~~F~pi~sv~~dH~dP 310 (474)
.|.|+. .+...++.. .++.|.+.-+.-|.+- .....+| -|. -.||||++.+-.|...-. =
T Consensus 162 ~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~p~~~~g-----G 229 (367)
T TIGR03404 162 HTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLD-QEAVTGP------AGEVPGPFTYHLSEQKPKQVPG-----G 229 (367)
T ss_pred hCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccc-cccCcCC------CCCCCccEEEEhhhCCceecCC-----c
Confidence 233222 222121111 1122332111111111 0011112 233 236899999988864311 1
Q ss_pred CcceEEeecCCCC---CceEEEeeeeCCccccCCCCCCCCCCCCCcccccceeeecccccc---------cCCcCCCeee
Q 011934 311 SINTVLTAPTDKP---GVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAK---------ADGFLPGGAS 378 (474)
Q Consensus 311 Si~tvltaps~~p---G~av~dFviF~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar---------~~g~~pG~~S 378 (474)
++ ..++.+ ..| +++++-+ -..++..|+|=.|.| .+|+++++.|.-... ...+.+|.+.
T Consensus 230 ~~-~~~~~~-~~p~~~~~s~~~~-------~l~PG~~~~~H~H~~-~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 230 TV-RIADST-NFPVSKTIAAAIV-------TVEPGAMRELHWHPN-ADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred eE-EEEChh-hccCcceEEEEEE-------EECCCCccCCeeCcC-CCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 22 222221 122 2222221 257999999966666 369999999985332 1248999999
Q ss_pred eecCCCCCCC
Q 011934 379 LHSCMTPHGP 388 (474)
Q Consensus 379 LHp~g~pHGP 388 (474)
+-|.+.+|.=
T Consensus 300 ~iP~g~~H~i 309 (367)
T TIGR03404 300 YVPRNMGHYV 309 (367)
T ss_pred EECCCCeEEE
Confidence 9999999943
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00058 Score=60.78 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=60.6
Q ss_pred cccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCC
Q 011934 144 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 222 (474)
Q Consensus 144 ~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~ 222 (474)
..++..+....... .+=...+-||.+++.+|++.+.-.-..++|++||.++||.|+.+|+.- .|.....++|+...
T Consensus 36 ~~~~~~~v~pg~~~--~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N-~G~~~L~liei~~p 111 (127)
T COG0662 36 YSIARILVKPGEEI--SLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRN-TGKIPLVLIEVQSP 111 (127)
T ss_pred EEEEEEEECCCccc--CcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEc-CCCcceEEEEEecC
Confidence 34455555555543 133455579999999999999999999999999999999999999986 55688999998744
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.29 E-value=0.00081 Score=52.17 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=46.7
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIA 217 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~ 217 (474)
.-+..+.++++++.+|++.+..+-....+++||.+.||.|+.+++.-. +++++.+++
T Consensus 13 ~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 13 PHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred CEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 445566669999999999999999999999999999999999999653 345555543
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.03 E-value=0.0024 Score=61.13 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=49.7
Q ss_pred ecCCCCEEEEEEeCcEEEEeec----eeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 163 CNADGDFLVVPQKGRLWIATEC----GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~TEf----G~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
-...+||+++..+|++.|+.+- ..+.+++||..+||+|+.++..- ...+.++++|--
T Consensus 50 H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~ 110 (177)
T PRK13264 50 HYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERK 110 (177)
T ss_pred ccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeC
Confidence 3467999999999999998843 48999999999999999999976 567999999975
No 12
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=96.83 E-value=0.021 Score=51.59 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=46.2
Q ss_pred ceecCCCCEEEEEEeCcEEEEeece------eeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECG------KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEI 219 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG------~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~ 219 (474)
.-+..++++++++.+|++.+...-. ...+++||+++||+|+.+.+.-. +.+++.+++.+
T Consensus 45 ~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~ 110 (146)
T smart00835 45 PHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNT 110 (146)
T ss_pred CeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEec
Confidence 4455568899999999999987544 88999999999999999988653 34666655443
No 13
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=96.53 E-value=0.014 Score=48.98 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=44.1
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC-CeeEEEEEEc
Q 011934 163 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG-PSRGYIAEIF 220 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g-~~rgyi~E~~ 220 (474)
.-.|.=+|+++.+|++.+..+.....++|||+++||.|..+++...++ +.+.+++-..
T Consensus 19 h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 19 HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 557788999999999999999999999999999999999999987554 6777777654
No 14
>PRK11171 hypothetical protein; Provisional
Probab=96.38 E-value=0.034 Score=55.71 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred CCCCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCC--CCCccceecCCCCEEEEEEeCcEEEEeece
Q 011934 108 TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANK--SMDNCAFCNADGDFLVVPQKGRLWIATECG 185 (474)
Q Consensus 108 ~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~--sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG 185 (474)
++|.-+.+ ..+| +|......++...... .++.+.+..... +... .+....+++++++.+|++.++.+-.
T Consensus 31 ~~p~~~v~--~~lp----~~~~~~~~~L~~~~~~--~~~~~~~~~l~PG~~~~~-~~h~~~~eE~~~VlsG~l~v~~~g~ 101 (266)
T PRK11171 31 IPPDDIVT--SVLP----GWENTRAWVLARPGLG--ATFSQYLVEVEPGGGSDQ-PEPDEGAETFLFVVEGEITLTLEGK 101 (266)
T ss_pred ECCcCEEe--ecCC----CCCCeEEEEEeCCCCC--CcEEEEEEEECCCCcCCC-CCCCCCceEEEEEEeCEEEEEECCE
Confidence 45555553 3344 5556666666665332 344444444432 2211 2334467999999999999999999
Q ss_pred eeeecCCcEEEEcceeEEEEE-CCCCCeeEEEEEE
Q 011934 186 KLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIAEI 219 (474)
Q Consensus 186 ~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~E~ 219 (474)
...+++||.+.+|.++.+++. ..+.+++.+++.-
T Consensus 102 ~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 102 THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 999999999999999999996 4456888888753
No 15
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.29 E-value=0.014 Score=47.64 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=46.1
Q ss_pred cEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeece-eeeecCCcEEEEcceeEEEEEC
Q 011934 146 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG-KLEVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 146 ~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG-~L~v~pGd~vVIPRGi~frv~l 207 (474)
+...+|.++..- +=...+.||++++.+|+..|.-+-| ...++|||+++||+|.+-+++.
T Consensus 7 ~~~g~w~~~pg~---~~~~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGK---FPWPYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEE---EEEEESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCce---eEeeCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 345778887642 1123345999999999999999888 7889999999999999888865
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.28 E-value=0.015 Score=51.31 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=41.4
Q ss_pred ecCC-CCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC
Q 011934 163 CNAD-GDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 208 (474)
Q Consensus 163 ~NaD-GDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~ 208 (474)
-+++ ++..+++.+|+++++.+--...+++||+++||+|+.+.+.-.
T Consensus 59 H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 59 HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence 5555 999999999999999997778899999999999999999653
No 17
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.17 E-value=0.0075 Score=56.50 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=46.2
Q ss_pred cEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011934 146 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 146 ~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
|+..+.....+ .+-+--+=||+.++.+|+|.|..+-.++..+|||++.||+|.+-.+.-++
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCC
Confidence 34455555532 36677788999999999999999988999999999999999998887654
No 18
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.05 E-value=0.049 Score=51.02 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=50.8
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEE
Q 011934 162 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEI 219 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~ 219 (474)
.....|+|++++.+|++.++.+-....+++||.+.||.++.+++.-+ +.+++.+++..
T Consensus 123 ~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 123 RIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred ccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 35678999999999999999999999999999999999999999875 34778877653
No 19
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=95.72 E-value=0.024 Score=53.26 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCCCEEEEEEeCcEEEEeece-----eeeecCCcEEEEcceeEEEEECCC
Q 011934 165 ADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 165 aDGDeLi~pq~G~l~l~TEfG-----~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
.+.||+.|+.+|++.+--..+ +|.+++||+++||+||.+|+.+.+
T Consensus 90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 466999999999987765544 589999999999999999999854
No 20
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.67 E-value=0.028 Score=53.05 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=41.1
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEE
Q 011934 166 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 216 (474)
Q Consensus 166 DGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi 216 (474)
+=|++-++.+|+|.+.++-+.+..+|||++.||+|-.-.+..+. .+|.+.
T Consensus 117 ~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g-ea~fly 166 (176)
T COG4766 117 NYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG-EAKFLY 166 (176)
T ss_pred cccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc-eEEEEE
Confidence 34789999999999999999999999999999999766666533 455443
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=95.41 E-value=0.21 Score=50.06 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=48.0
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEE-CCCCCeeEEEEEE
Q 011934 164 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIAEI 219 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~E~ 219 (474)
....++.+++.+|+++|+-+-....+++||++.||.|+.+++. ..+.+++.++++-
T Consensus 77 ~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k 133 (260)
T TIGR03214 77 GEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKK 133 (260)
T ss_pred CCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEe
Confidence 3334899999999999998877779999999999999999995 4456899999885
No 22
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=95.41 E-value=0.11 Score=46.88 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=50.3
Q ss_pred cccEEEEEE-eCCCCCccceecCCCCEEEEEEeCcEEEEeec--e------ee----eecCCcEEEEcceeEEEEECC--
Q 011934 144 HGYAIHMYT-ANKSMDNCAFCNADGDFLVVPQKGRLWIATEC--G------KL----EVSPGEIAVLPQGFRFAVSLP-- 208 (474)
Q Consensus 144 ~G~ai~~y~-~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEf--G------~L----~v~pGd~vVIPRGi~frv~l~-- 208 (474)
.++++.+.. --.+|-- -.++ ++++|+++.+|++++..-. + .. ++++||+++||+|..+-+.-.
T Consensus 32 ~~~~~~~~~i~pg~~~~-Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~ 109 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRA-PHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD 109 (144)
T ss_dssp TTEEEEEEEEETTEEEE-EEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSS
T ss_pred cceEEEeeehhcCCccc-eeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCC
Confidence 344445444 2225522 3466 9999999999999965332 2 22 399999999999999988654
Q ss_pred CCCeeEEEEEEcCCeee
Q 011934 209 DGPSRGYIAEIFGTHFQ 225 (474)
Q Consensus 209 ~g~~rgyi~E~~~~~~~ 225 (474)
+.....+++.+.....+
T Consensus 110 ~~~~~~~~f~~~~~~~~ 126 (144)
T PF00190_consen 110 DEALVLIIFDTNNPPNQ 126 (144)
T ss_dssp SSEEEEEEEEESSTTGE
T ss_pred CCCEEEEEEECCCCccc
Confidence 33456666666544333
No 23
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=95.02 E-value=0.27 Score=51.73 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=62.0
Q ss_pred CCCccccCCCCCCCCCCCcccce-eeeeccCCcccccccEEEEEEeCC-CCCccceecCCCCEEEEEEeCcEEEEee--c
Q 011934 109 TPTQLRWKPVDIPDSPTDFIDGL-YTICGAGSSFLRHGYAIHMYTANK-SMDNCAFCNADGDFLVVPQKGRLWIATE--C 184 (474)
Q Consensus 109 ~P~~lrW~p~~~p~~~~Dfv~gl-~tl~g~gD~~~~~G~ai~~y~~~~-sM~~~~f~NaDGDeLi~pq~G~l~l~TE--f 184 (474)
.|+.++|+-.+.+. ...-.|. +.+....-|.. +++++....... .| ...=.+...||++|+.+|++++.-. -
T Consensus 210 ~~~~~~~~~~~~~p--~~~~gG~~~~~~~~~~p~~-~~~s~~~~~l~PG~~-~~~H~H~~~~E~~yvl~G~~~~~v~d~~ 285 (367)
T TIGR03404 210 VPGPFTYHLSEQKP--KQVPGGTVRIADSTNFPVS-KTIAAAIVTVEPGAM-RELHWHPNADEWQYFIQGQARMTVFAAG 285 (367)
T ss_pred CCccEEEEhhhCCc--eecCCceEEEEChhhccCc-ceEEEEEEEECCCCc-cCCeeCcCCCeEEEEEEEEEEEEEEecC
Confidence 46666665555531 1111122 33333333323 345544444332 33 2233577789999999999988742 1
Q ss_pred --e-eeeecCCcEEEEcceeEEEEECC-CCCeeEEEE
Q 011934 185 --G-KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIA 217 (474)
Q Consensus 185 --G-~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~ 217 (474)
+ ...+++||.++||+|..+++.-. +++++.+++
T Consensus 286 g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 286 GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEV 322 (367)
T ss_pred CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEE
Confidence 2 45799999999999999999753 345454443
No 24
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=94.97 E-value=0.12 Score=50.67 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=49.1
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011934 162 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 219 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 219 (474)
....|.-+|+++.+|++.+..+.....+.+||+++||.|..++.....+..+++.+..
T Consensus 38 ~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l~~ 95 (278)
T PRK10296 38 LHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGI 95 (278)
T ss_pred CcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeeeCCCcEEEEEEe
Confidence 4566899999999999999999999999999999999999997754344567776664
No 25
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=94.84 E-value=0.078 Score=52.88 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 215 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgy 215 (474)
+=.--+=||++|+.+|+++++.+--...++|||.++||+|....+..++ .+|.+
T Consensus 169 f~wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~-~aRfl 222 (233)
T PRK15457 169 FPWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPS-SVRFL 222 (233)
T ss_pred cceeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCC-CeeEE
Confidence 3356677899999999999999988899999999999999996664443 45543
No 26
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=94.27 E-value=0.14 Score=49.45 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCCCEEEEEEeCcEEEEeece-----eeeecCCcEEEEcceeEEEEECC-CCCeeEEEEEEcCCeeeeCCCCCCCCCCC
Q 011934 165 ADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEIFGTHFQLPDLGPIGANGL 237 (474)
Q Consensus 165 aDGDeLi~pq~G~l~l~TEfG-----~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E~~~~~~~LPelGpiG~ngl 237 (474)
.+-+|++++.+|++.+..+-. ...++|||+++||+|+.+++.-. +.+.+.+. ++-.. .=.++|+|.++|-
T Consensus 95 ~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~--v~p~~-~~~dY~~i~~~g~ 170 (191)
T PRK04190 95 ADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA--CYPAD-AGHDYGTIAEKGF 170 (191)
T ss_pred CCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE--EEcCC-cccccHHHHhcCC
Confidence 356799999999998876533 47899999999999999998643 33544443 44222 2235666655443
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=94.24 E-value=0.44 Score=44.42 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=50.7
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
+=+..--+|.+++.+|++.+..+--...+.+||.+.||+|..+|+.-+ |..-..++|+-
T Consensus 78 lq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~-g~~~L~~IEVq 136 (151)
T PF01050_consen 78 LQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENP-GKTPLEIIEVQ 136 (151)
T ss_pred eeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECC-CCcCcEEEEEe
Confidence 456777889999999999999999999999999999999999999753 33447888874
No 28
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.52 E-value=0.6 Score=50.41 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=45.6
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEE
Q 011934 162 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIA 217 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~ 217 (474)
-+....+|.+++.+|++.++.+--...+++||.+.||+|+.+++.-. +.+++.+.+
T Consensus 392 h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 392 QMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred cccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 34555678889999999999999999999999999999999999753 335554444
No 29
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=92.89 E-value=0.92 Score=40.99 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeecee-ee
Q 011934 110 PTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK-LE 188 (474)
Q Consensus 110 P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~-L~ 188 (474)
+....|.|.++. .+|..---..+.+++|= .+...+|.|+..- +=.+-+.+|.-.+.+|...|..|-|. ++
T Consensus 15 ~~~~~~~p~~~i--~G~p~~~t~~~~~~~dg----~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~Ge~v~ 85 (116)
T COG3450 15 PELGDPAPEPLI--LGDPSAATWNLYGAPDG----QVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDGGEPVE 85 (116)
T ss_pred ccccccCCcccc--cCCccceehheeeCCCC----CeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCCCeEEE
Confidence 344455555553 23333333334444432 2344788888543 44566679999999999999999996 67
Q ss_pred ecCCcEEEEcceeEEEEECCCCCeeEEEE
Q 011934 189 VSPGEIAVLPQGFRFAVSLPDGPSRGYIA 217 (474)
Q Consensus 189 v~pGd~vVIPRGi~frv~l~~g~~rgyi~ 217 (474)
+++||-+|+|.|.+=.++..+.--+-|++
T Consensus 86 ~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 86 VRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred EcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 99999999999998877765655566665
No 30
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=92.32 E-value=1.4 Score=39.84 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred ccEEE--EEEeCCCCCccceecCCCCEEEEEEeCcEEEE-ee-ceeeeecCCcEEEEcceeEEEEECCCCCeeEEEE
Q 011934 145 GYAIH--MYTANKSMDNCAFCNADGDFLVVPQKGRLWIA-TE-CGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 217 (474)
Q Consensus 145 G~ai~--~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~-TE-fG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~ 217 (474)
++.+. .+.++++... .+.+. ++.+++.+|++.+. .+ --...+.+||.+++|.+..+++.-. .+++.+.+
T Consensus 34 ~~~~~~~~l~pG~~~~~-h~h~~--~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v 106 (125)
T PRK13290 34 GFSFHETTIYAGTETHL-HYKNH--LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLRAG-EDMRLVCV 106 (125)
T ss_pred CEEEEEEEECCCCcccc-eeCCC--EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence 34444 3445544432 33333 58999999999999 75 7788999999999999999999864 56665444
No 31
>PRK11171 hypothetical protein; Provisional
Probab=91.58 E-value=1.6 Score=43.90 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=70.1
Q ss_pred CccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEE--eCCCCCccceecCCCCEEEEEEeCcEEEEeeceeee
Q 011934 111 TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYT--ANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLE 188 (474)
Q Consensus 111 ~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~--~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~ 188 (474)
+...|.+.+++...+..+ +..+.+..|.... +.+.... ++.+.. +-.....++.|++.+|+|.+.-+--...
T Consensus 153 ~~~d~~~~~~~g~~g~~~--~~~~~~p~~~~~~--~~~~~~~l~PG~~~~--~~~~~~~ee~i~Vl~G~~~~~~~~~~~~ 226 (266)
T PRK11171 153 NESDIEPIPMPGTDGVWA--TTRLVDPEDLRFD--MHVNIVTFEPGASIP--FVETHVMEHGLYVLEGKGVYRLNNDWVE 226 (266)
T ss_pred chhcccccccCCCCCeEE--EEEeeCchhcCCC--cEEEEEEECCCCEEc--cCcCCCceEEEEEEeCEEEEEECCEEEE
Confidence 344455655542222222 3334444343332 3444443 444432 2246888899999999999999988999
Q ss_pred ecCCcEEEEcceeEEEEEC-CCCCeeEEEEEEcCCe
Q 011934 189 VSPGEIAVLPQGFRFAVSL-PDGPSRGYIAEIFGTH 223 (474)
Q Consensus 189 v~pGd~vVIPRGi~frv~l-~~g~~rgyi~E~~~~~ 223 (474)
|++||.+.+|-+....+.- .+.++|.++.-..+.+
T Consensus 227 l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~nr~ 262 (266)
T PRK11171 227 VEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVNRH 262 (266)
T ss_pred eCCCCEEEECCCCCEEEECCCCCcEEEEEEcccccC
Confidence 9999999999999999974 3457888887665444
No 32
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=91.19 E-value=0.4 Score=46.87 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=42.6
Q ss_pred CCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEE
Q 011934 167 GDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 218 (474)
Q Consensus 167 GDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E 218 (474)
.-+|+++.+|.+.+..+--...+++||+++||.|+.+++.... ...++++-
T Consensus 44 ~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~-~~~~~~i~ 94 (287)
T TIGR02297 44 YYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDL-DADGHVLT 94 (287)
T ss_pred ceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCC-CcceEEEE
Confidence 4689999999999999999999999999999999999987533 33455444
No 33
>PLN00212 glutelin; Provisional
Probab=91.01 E-value=1.4 Score=48.36 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=37.0
Q ss_pred cCCCCCCCCCCCCCcccccceeeeccccc-------cc---CCcCCCeeeeecCCCCC
Q 011934 339 VAEHTFRPPYYHRNCMSEFMGLIRGGYEA-------KA---DGFLPGGASLHSCMTPH 386 (474)
Q Consensus 339 ~ae~tfRpPYyHrNv~sE~mgyi~G~y~a-------r~---~g~~pG~~SLHp~g~pH 386 (474)
-.++++-+|.+|.| ..|+++.+.|.-.. ++ ..+.+|-+-.-|.+.+|
T Consensus 355 L~~gam~~PHwn~n-A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v 411 (493)
T PLN00212 355 LYQNALLSPFWNVN-AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAV 411 (493)
T ss_pred EcCCcccCCeecCC-CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeE
Confidence 35899999999999 67999999887311 11 24789999999999988
No 34
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.99 E-value=1.3 Score=39.07 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=43.8
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 166 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 166 DGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
|.=.|+++.+|+.+++..-..+.+.|||++|++-+-.|++.. .+..+.+++-+.
T Consensus 54 ~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~-~~~~~~~~l~ip 107 (172)
T PF14525_consen 54 DHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEF-SAGCRQLSLRIP 107 (172)
T ss_pred CEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEE-CCCccEEEEEEC
Confidence 344677889999999999889999999999999999999987 435566655554
No 35
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=90.79 E-value=0.61 Score=38.97 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=36.4
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEE
Q 011934 164 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 216 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi 216 (474)
..+|.+.+|+.+|++... -| .+.+|||+..|.|..+++.-.+ .+..||
T Consensus 41 ~H~g~ee~~VLeG~~~d~--~~--~~~~G~~~~~p~g~~h~~~s~~-gc~~~v 88 (91)
T PF12973_consen 41 RHPGGEEILVLEGELSDG--DG--RYGAGDWLRLPPGSSHTPRSDE-GCLILV 88 (91)
T ss_dssp EESS-EEEEEEECEEEET--TC--EEETTEEEEE-TTEEEEEEESS-CEEEEE
T ss_pred CCCCcEEEEEEEEEEEEC--Cc--cCCCCeEEEeCCCCccccCcCC-CEEEEE
Confidence 468888889999999853 35 5799999999999999998643 466665
No 36
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=90.41 E-value=1.8 Score=47.31 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=48.8
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCC
Q 011934 162 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 222 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~ 222 (474)
-+...++|.+++.+|++.+.-+-=...+.+||.+.||.|+.+|+.-+ |....-++|+-.+
T Consensus 401 ~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~-g~~~l~iI~V~~g 460 (478)
T PRK15460 401 QMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENP-GKIPLDLIEVRSG 460 (478)
T ss_pred CCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcC-CCCCEEEEEEEcC
Confidence 45667889999999999999988889999999999999999999753 3344556666433
No 37
>PF12852 Cupin_6: Cupin
Probab=90.18 E-value=0.46 Score=44.15 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=35.5
Q ss_pred CCEEEEEEeCcEEEEeec-e-eeeecCCcEEEEcceeEEEEE
Q 011934 167 GDFLVVPQKGRLWIATEC-G-KLEVSPGEIAVLPQGFRFAVS 206 (474)
Q Consensus 167 GDeLi~pq~G~l~l~TEf-G-~L~v~pGd~vVIPRGi~frv~ 206 (474)
+=.++++.+|+..|+.+- + .+.+++||+|++|+|..|++.
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~ 76 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLS 76 (186)
T ss_pred ceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeC
Confidence 467899999999999665 3 699999999999999999995
No 38
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=89.96 E-value=1.1 Score=44.31 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=41.5
Q ss_pred ecCCCCEEEEEEeCcEEEE--eecee---eeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 163 CNADGDFLVVPQKGRLWIA--TECGK---LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~--TEfG~---L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
-|+|.+|+++.+.|+++.. ..-|. +.+++||.|.||+|--+++.= .|..-..++++|
T Consensus 99 p~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N-~Gd~pLvf~~v~ 160 (209)
T COG2140 99 PNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTIN-TGDEPLVFLNVY 160 (209)
T ss_pred CCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeec-CCCCCEEEEEEE
Confidence 5777778999999977654 44454 558999999999999997753 333335555655
No 39
>PRK13502 transcriptional activator RhaR; Provisional
Probab=89.51 E-value=0.82 Score=44.75 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=41.2
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011934 164 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
..|-=+|+++.+|++.++.+-....+.|||+++||.|..+++...+
T Consensus 35 ~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 35 THEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred ccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccC
Confidence 4466799999999999999999999999999999999999986533
No 40
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=89.12 E-value=1.9 Score=44.30 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=51.8
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeE-EEEECC--CCCeeEEEEEEcCCeeeeC
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAVSLP--DGPSRGYIAEIFGTHFQLP 227 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~-frv~l~--~g~~rgyi~E~~~~~~~LP 227 (474)
.|.-.+=+..|++..|.++|+.+--.-.+.+.|-+.||+|.+ +.+.-. ..+++.|||-+. +|=.+|
T Consensus 68 ~~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP-A~~~~P 136 (276)
T PRK00924 68 SYFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP-AHTTYP 136 (276)
T ss_pred eeecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc-cCCCCC
Confidence 456666778999999999999877777788999999999977 566433 347999999986 444444
No 41
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=88.91 E-value=3.9 Score=34.89 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=42.2
Q ss_pred ccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEE-CCCCCeeEEEE
Q 011934 159 NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIA 217 (474)
Q Consensus 159 ~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~-l~~g~~rgyi~ 217 (474)
++.-.+.+--+++++++|.+.+.=.-=...+.+|+...||||=.|.+. +-+.+++.+.+
T Consensus 25 K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 25 KPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp EEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred cCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 434455566688899999999997777888999999999999999995 44567887754
No 42
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=88.47 E-value=1.7 Score=42.86 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=52.6
Q ss_pred CcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEE
Q 011934 126 DFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAV 205 (474)
Q Consensus 126 Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv 205 (474)
..|.|+.++.-.|.... +++.+.. | +|-+|.++.+|++.+.+.-+...+++||+++||.|+.+++
T Consensus 23 ~~~~~~~~~~~~~~~d~------~~~r~~~-~--------~~~~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~ 87 (290)
T PRK10572 23 HLVAGLTPIEAGGYLDF------FIDRPLG-M--------KGYILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHY 87 (290)
T ss_pred eeeecccccccCCccce------eeecCCC-c--------cceEEEEEEeccEEEecCCeeEecCCCCEEEECCCCceee
Confidence 44677777765555554 6665542 3 3457889999999999999999999999999999999987
Q ss_pred EC
Q 011934 206 SL 207 (474)
Q Consensus 206 ~l 207 (474)
..
T Consensus 88 ~~ 89 (290)
T PRK10572 88 GR 89 (290)
T ss_pred cc
Confidence 65
No 43
>PRK13501 transcriptional activator RhaR; Provisional
Probab=87.85 E-value=1.1 Score=44.37 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=41.7
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011934 163 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 207 (474)
.-.|-=+|+++.+|++.+..+.....+.+||+++||.|..+.+..
T Consensus 34 H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 34 HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccc
Confidence 446888999999999999999999999999999999999999875
No 44
>PRK13500 transcriptional activator RhaR; Provisional
Probab=87.59 E-value=1.3 Score=44.71 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=41.9
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011934 163 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 207 (474)
-..|.-||+++.+|++.+..+.....+.+||+++||.|..+++..
T Consensus 64 H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 64 HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccc
Confidence 456788999999999999999999999999999999999999865
No 45
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=87.01 E-value=1.1 Score=43.21 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCC
Q 011934 166 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGP 211 (474)
Q Consensus 166 DGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~ 211 (474)
+|+.++.+|.+.+.+. .|++.+||++.||.||.+++.+...+
T Consensus 103 aG~GiF~v~~~d~~~~----~i~c~~gDLI~vP~gi~HwFtlt~~~ 144 (181)
T COG1791 103 AGEGIFDVHSPDGKVY----QIRCEKGDLISVPPGIYHWFTLTESP 144 (181)
T ss_pred ecceEEEEECCCCcEE----EEEEccCCEEecCCCceEEEEccCCC
Confidence 3444444444443322 68899999999999999999996543
No 46
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=86.68 E-value=2.3 Score=42.94 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=49.1
Q ss_pred ccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011934 145 GYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 145 G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
|++|-....+ +|. .+--.+-=||+++.+|++.+...-....+.|||+++|+.|+.|++...+
T Consensus 27 ~~~~~~~~~~-~m~--~~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 27 RLEIEFRPPH-IMP--TSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred eeEEEeeCCC-CCC--CCCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccC
Confidence 4555555544 563 3445666688899999999999999999999999999999999987633
No 47
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=86.57 E-value=2.4 Score=40.38 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=52.5
Q ss_pred ccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcce--eEEEEECCCCCeeEEEEEE
Q 011934 143 RHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG--FRFAVSLPDGPSRGYIAEI 219 (474)
Q Consensus 143 ~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRG--i~frv~l~~g~~rgyi~E~ 219 (474)
+-|+-+-...+...- ...=...-.||++++.+|++.+...-|.-.|+|||.+=-|.| +-+.+.= .+..-.-.+|+
T Consensus 41 ~fGvn~~~v~PG~~S-s~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN-~s~~~~~yL~v 117 (161)
T COG3837 41 RFGVNLEIVEPGGES-SLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLIN-RSDVILRYLEV 117 (161)
T ss_pred hcccceEEeCCCCcc-ccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEee-cCCceEEEEEe
Confidence 345555655555431 223345678999999999999999999999999999999999 6665542 23333444444
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=86.12 E-value=1.1 Score=43.53 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=42.3
Q ss_pred ecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011934 163 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
...|.-+|+++.+|++++..+-....+++||+++||.|..+.+...+
T Consensus 31 H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 31 HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhcc
Confidence 45688899999999999999999999999999999999998876533
No 49
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=84.75 E-value=3.2 Score=39.19 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=34.5
Q ss_pred ccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 159 NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 159 ~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
.++|+--.||+++=+++. +. +=.+.+++||+-++|.++.++=.-. +.+.|+|||-.
T Consensus 54 eE~FyQ~kG~m~Lkv~e~-g~----~kdi~I~EGe~fLLP~~vpHsP~R~-~~tiGLViEr~ 109 (151)
T PF06052_consen 54 EEFFYQLKGDMCLKVVED-GK----FKDIPIREGEMFLLPANVPHSPQRP-ADTIGLVIERK 109 (151)
T ss_dssp -EEEEEEES-EEEEEEET-TE----EEEEEE-TTEEEEE-TT--EEEEE--TT-EEEEEEE-
T ss_pred ceEEEEEeCcEEEEEEeC-Cc----eEEEEeCCCcEEecCCCCCCCCcCC-CCcEEEEEEec
Confidence 346666667766655552 12 2278999999999999999987653 36899999964
No 50
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=83.26 E-value=3 Score=41.17 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=37.3
Q ss_pred CEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCC
Q 011934 168 DFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 168 DeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
-+|+++..|.+.++.+-....+.|||+++|+.+..|++...+
T Consensus 72 ~~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 72 FFTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred EEEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCC
Confidence 357788999999999999999999999999999999987633
No 51
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=82.56 E-value=2.5 Score=40.62 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCCCEEEEEEeCcEEEE--eece---eeeecCCcEEEEcceeEEEEECCCC----CeeEEEEEE
Q 011934 165 ADGDFLVVPQKGRLWIA--TECG---KLEVSPGEIAVLPQGFRFAVSLPDG----PSRGYIAEI 219 (474)
Q Consensus 165 aDGDeLi~pq~G~l~l~--TEfG---~L~v~pGd~vVIPRGi~frv~l~~g----~~rgyi~E~ 219 (474)
.+-|++-++.+|++-+- +.-+ ++-|+.||.+|||.||-+|+++... ..|.|+=|-
T Consensus 91 h~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p 154 (179)
T KOG2107|consen 91 HEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEP 154 (179)
T ss_pred CchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCc
Confidence 56788889999987544 3333 5679999999999999999988432 346555443
No 52
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=79.78 E-value=4.6 Score=40.88 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.4
Q ss_pred cCCCCEEEEEEeCcEEEEee---ceeeeec------CCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 164 NADGDFLVVPQKGRLWIATE---CGKLEVS------PGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l~TE---fG~L~v~------pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
-.+-+..+++..|.++|+.+ +-.|--| +.|.+.||+|.+++|.. .+.++.||+-+.
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a-~~~ae~~~~sap 108 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFA-STDAEFAVCSAP 108 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEE-SSTEEEEEEEEE
T ss_pred CCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEE-cCCCEEEEEccc
Confidence 44557788999999999984 4444444 44999999999999987 445999999876
No 53
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=79.72 E-value=12 Score=34.49 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=61.0
Q ss_pred cccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeece-----eeeecCCcEEEEcceeEEE-EECCCCCeeEEEE
Q 011934 144 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFA-VSLPDGPSRGYIA 217 (474)
Q Consensus 144 ~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG-----~L~v~pGd~vVIPRGi~fr-v~l~~g~~rgyi~ 217 (474)
+|+-.|+.+....-.-++--...-+-.|++..|+.+ |-+| ..+++|||++.||.|+-++ .++.+.++...|.
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah--~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAH--TWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceee--eeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 355567766655444446667778889999998765 4455 3569999999999999885 4666777777776
Q ss_pred EEc----CCeeeeCCCCCC
Q 011934 218 EIF----GTHFQLPDLGPI 232 (474)
Q Consensus 218 E~~----~~~~~LPelGpi 232 (474)
-+- .+...||+|.+|
T Consensus 122 RsDp~~~Esv~~lpelD~l 140 (142)
T COG4101 122 RSDPNPQESVQLLPELDPL 140 (142)
T ss_pred ccCCCCCcCcEEecccccc
Confidence 431 134677777765
No 54
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=77.49 E-value=18 Score=36.31 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=50.0
Q ss_pred ccEEEEE--EeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC-CCCeeEEEEE
Q 011934 145 GYAIHMY--TANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAE 218 (474)
Q Consensus 145 G~ai~~y--~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~-~g~~rgyi~E 218 (474)
++.+++. .+..++. +--...=++.+++.+|.+.+.=.--..+|++||++.||.++...+.-. +++.|.++-=
T Consensus 178 ~~~~~~~~~~PG~~~~--~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk 252 (260)
T TIGR03214 178 DMNVHILSFEPGASHP--YIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK 252 (260)
T ss_pred CcEEEEEEECCCcccC--CcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence 4444544 4444542 113333457789999999998887888999999999999999988653 3455655543
No 55
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=77.47 E-value=5.3 Score=39.08 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=50.3
Q ss_pred cEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC-CeeEEEEEEcCCee
Q 011934 146 YAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG-PSRGYIAEIFGTHF 224 (474)
Q Consensus 146 ~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g-~~rgyi~E~~~~~~ 224 (474)
+++.-+.++..++. -...|.|++++.+|++. -|.| .+.+||++.+|-|..++....++ .+..|++ ..+++
T Consensus 129 v~Ll~i~pG~~~p~---H~H~G~E~tlVLeG~f~--de~g--~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v--~dapl 199 (215)
T TIGR02451 129 VRLLYIEAGQSIPQ---HTHKGFELTLVLHGAFS--DETG--VYGVGDFEEADGSVQHQPRTVSGGDCLCLAV--LDAPL 199 (215)
T ss_pred EEEEEECCCCccCC---CcCCCcEEEEEEEEEEE--cCCC--ccCCCeEEECCCCCCcCcccCCCCCeEEEEE--ecCCc
Confidence 45555666666643 45599999999999964 5555 58999999999999999876443 4554443 33444
Q ss_pred ee
Q 011934 225 QL 226 (474)
Q Consensus 225 ~L 226 (474)
++
T Consensus 200 ~f 201 (215)
T TIGR02451 200 RF 201 (215)
T ss_pred cc
Confidence 44
No 56
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=74.48 E-value=6.2 Score=42.20 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=48.0
Q ss_pred ceecCCCCEEEEEEeCcEEEEee-ceeeeecCCcEEEEcceeEEEEECCCCCeeEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIATE-CGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 215 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TE-fG~L~v~pGd~vVIPRGi~frv~l~~g~~rgy 215 (474)
.|.-.||--++++.+|++.++|+ -+.+.|.+||++.||.-.--++...+++-.+|
T Consensus 347 ~~~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~~~~y 402 (411)
T KOG2757|consen 347 KFPGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDPFLGY 402 (411)
T ss_pred EeecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcceeee
Confidence 78889999999999999999999 99999999999999998877777766664444
No 57
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=74.39 E-value=15 Score=37.49 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=46.4
Q ss_pred cccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEccee-EEEEE
Q 011934 144 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGF-RFAVS 206 (474)
Q Consensus 144 ~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi-~frv~ 206 (474)
.-+++..+..+..+ .+.+.++=.++++.+|+++|...-+.+.+++||.++||.+. .+.++
T Consensus 233 ~~F~~~~~~~~~~~---~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 233 EYFSVYKWDISGKA---EFIQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred CCeEEEEEEeCCce---eeccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCccEEEE
Confidence 45666777766442 23455677788899999999988888999999999999998 57773
No 58
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=71.81 E-value=31 Score=33.03 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=50.1
Q ss_pred ccceeeeeccCCc-ccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeece---------eeeecCCcEEEE
Q 011934 128 IDGLYTICGAGSS-FLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG---------KLEVSPGEIAVL 197 (474)
Q Consensus 128 v~gl~tl~g~gD~-~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG---------~L~v~pGd~vVI 197 (474)
..||.-+..||.. .-..-+.|.+.+...-- ..----...+|++|+++|+|.+.=..- .+.+.|++...|
T Consensus 25 r~GLsH~TvAGa~~hGmkevEVwlQTfAPG~-~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~I 103 (167)
T PF02041_consen 25 RPGLSHITVAGALLHGMKEVEVWLQTFAPGS-ATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHI 103 (167)
T ss_dssp -TTEEEEEEE-HHHH--SSEEEEEEEE-TT--B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE
T ss_pred CCCcceEEeehhhhcCceeeeEEeeeecCCC-CCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEe
Confidence 4688888888764 23344566666554322 223355689999999999999885532 267789999999
Q ss_pred cceeEEEEECCC--CCeeEEEEEE
Q 011934 198 PQGFRFAVSLPD--GPSRGYIAEI 219 (474)
Q Consensus 198 PRGi~frv~l~~--g~~rgyi~E~ 219 (474)
|-+..+++-=.+ ...+.+|+=+
T Consensus 104 Pvn~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 104 PVNDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp -TT--EEEE---SSS-EEEEEEEE
T ss_pred CCCCcceeecCCCCcceEEEEEec
Confidence 999999985434 2456666554
No 59
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=71.46 E-value=5.8 Score=37.38 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=35.0
Q ss_pred ecCCCCEEEEEEeCcEEEEe--ece-eeeecCCcEEEEcceeEEEE
Q 011934 163 CNADGDFLVVPQKGRLWIAT--ECG-KLEVSPGEIAVLPQGFRFAV 205 (474)
Q Consensus 163 ~NaDGDeLi~pq~G~l~l~T--EfG-~L~v~pGd~vVIPRGi~frv 205 (474)
|.+...|++.+.+|...|+- +-| .|+|..||.++||.|+-++=
T Consensus 60 YHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~r 105 (163)
T COG4297 60 YHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCR 105 (163)
T ss_pred ccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccc
Confidence 56677899999999888762 333 68999999999999998854
No 60
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=70.97 E-value=7 Score=39.98 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=37.2
Q ss_pred EEEEEEeCcEEEEeecee-eeecCCcEEEEcceeEEEEECC
Q 011934 169 FLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLP 208 (474)
Q Consensus 169 eLi~pq~G~l~l~TEfG~-L~v~pGd~vVIPRGi~frv~l~ 208 (474)
.||.+.+|.+.|.++-|. |.+.++.++++||+..+++...
T Consensus 40 ~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~ 80 (291)
T PRK15186 40 VLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITME 80 (291)
T ss_pred EEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEec
Confidence 589999999999999987 9999999999999999998764
No 61
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=69.21 E-value=6.6 Score=37.36 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=45.9
Q ss_pred CCCCCCCCCcccccceeeeccccccc--------CCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEE
Q 011934 344 FRPPYYHRNCMSEFMGLIRGGYEAKA--------DGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFM 415 (474)
Q Consensus 344 fRpPYyHrNv~sE~mgyi~G~y~ar~--------~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfM 415 (474)
-|.. ||.|-.+|+.+-+.|.-.-+- --+.+|-+-|.|.+++|-|.+. .++...+
T Consensus 39 ~R~d-~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~-----------------~~t~~Lv 100 (159)
T TIGR03037 39 ARTD-FHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRP-----------------AGSIGLV 100 (159)
T ss_pred CCcc-cccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccC-----------------CCcEEEE
Confidence 3455 688876688888899843311 2378999999999999988643 3677888
Q ss_pred eeeccCccc
Q 011934 416 FESCLIPRI 424 (474)
Q Consensus 416 fET~~~l~~ 424 (474)
||-.++..-
T Consensus 101 IE~~r~~~~ 109 (159)
T TIGR03037 101 IERKRPQGE 109 (159)
T ss_pred EEeCCCCCC
Confidence 887777643
No 62
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=68.20 E-value=19 Score=36.45 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEE
Q 011934 125 TDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFA 204 (474)
Q Consensus 125 ~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~fr 204 (474)
..|++=+.+|.-||-. ++-+-+.-.+-.+|+.+|++++.-+-=.-..++|+|+.||.|..|+
T Consensus 59 ~tF~qyive~~p~GGs------------------~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~ 120 (264)
T COG3257 59 ATFVQYIVELHPNGGS------------------QRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWT 120 (264)
T ss_pred hhhhhheEEECCCCCC------------------CCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcce
Confidence 4777777777655522 2234455667789999999999988888889999999999999999
Q ss_pred EECC-CCCeeEEEEEE
Q 011934 205 VSLP-DGPSRGYIAEI 219 (474)
Q Consensus 205 v~l~-~g~~rgyi~E~ 219 (474)
+.-. ..++|...++-
T Consensus 121 ~~N~~~~~~rfhw~rk 136 (264)
T COG3257 121 LRNAQKEDSRFHWIRK 136 (264)
T ss_pred EeeccCCceEEEEEee
Confidence 9742 33788888874
No 63
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=66.82 E-value=20 Score=34.77 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=29.8
Q ss_pred cCCCCEEEEEEeCcEEE--Eeece-------eeeecCCcEEEEcceeEEEEEC
Q 011934 164 NADGDFLVVPQKGRLWI--ATECG-------KLEVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l--~TEfG-------~L~v~pGd~vVIPRGi~frv~l 207 (474)
+.+--|++++.+|++.+ +++-| .+.+.|||+|+||.|..+|..=
T Consensus 80 ~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN 132 (182)
T PF06560_consen 80 GLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTIN 132 (182)
T ss_dssp -TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE
T ss_pred CCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEE
Confidence 35678999999997765 45566 5779999999999999997643
No 64
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=66.48 E-value=19 Score=37.99 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred eecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC
Q 011934 162 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 162 f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l 207 (474)
-.++-+-.++++.+|+|..+..-..++.++||++|||--..++..-
T Consensus 265 ~~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f~vPsW~~~~h~a 310 (335)
T TIGR02272 265 TYRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVFVVPSWHPVRFEA 310 (335)
T ss_pred CccccccEEEEEEeCeEEEEECCEEEEecCCCEEEECCCCcEeccc
Confidence 3556677899999999999999999999999999999887666544
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=66.39 E-value=8.4 Score=37.29 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.6
Q ss_pred CCCCcccccceeeeccccccc--------CCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceeccceeEEeeecc
Q 011934 349 YHRNCMSEFMGLIRGGYEAKA--------DGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCL 420 (474)
Q Consensus 349 yHrNv~sE~mgyi~G~y~ar~--------~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lAfMfET~~ 420 (474)
||.|-..|+.+.+.|+-.-+- --+.+|-+-|.|.+++|.|... .++..++||-.+
T Consensus 49 ~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~-----------------~~tv~LviE~~r 111 (177)
T PRK13264 49 FHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE-----------------AGSIGLVIERKR 111 (177)
T ss_pred cccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC-----------------CCeEEEEEEeCC
Confidence 688777788888999842211 2488999999999999998642 366777777777
Q ss_pred Cccc
Q 011934 421 IPRI 424 (474)
Q Consensus 421 ~l~~ 424 (474)
+..-
T Consensus 112 ~~~~ 115 (177)
T PRK13264 112 PEGE 115 (177)
T ss_pred CCCC
Confidence 6643
No 66
>PLN00212 glutelin; Provisional
Probab=65.70 E-value=17 Score=40.16 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=37.4
Q ss_pred ceecCCCCEEEEEEeCcEEEEeec--e--ee--eecCCcEEEEcceeEEEEEC
Q 011934 161 AFCNADGDFLVVPQKGRLWIATEC--G--KL--EVSPGEIAVLPQGFRFAVSL 207 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEf--G--~L--~v~pGd~vVIPRGi~frv~l 207 (474)
=..|..+.+++|+.+|+++++=.. | .+ +|++||++|||+|..+-...
T Consensus 363 PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A 415 (493)
T PLN00212 363 PFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKA 415 (493)
T ss_pred CeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEee
Confidence 348889999999999999988432 1 22 59999999999999885543
No 67
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=63.29 E-value=34 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=32.3
Q ss_pred EEEEEeCcEEEEeece-------eeeecCCcEEEEcceeEEEEECCCCCeeEEE
Q 011934 170 LVVPQKGRLWIATECG-------KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 216 (474)
Q Consensus 170 Li~pq~G~l~l~TEfG-------~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi 216 (474)
.|-+.+|+|++.-.-+ .+...+|+..+|+-..-|||++.+...+.+|
T Consensus 28 ~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l 81 (82)
T PF09313_consen 28 KLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL 81 (82)
T ss_dssp EEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred EEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence 4556677776664443 4568899999999999999998665666654
No 68
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=61.95 E-value=9.5 Score=35.81 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCcccceeeeeccCC-cccccccEEEEEEeCCCCCccceecCCCCE
Q 011934 125 TDFIDGLYTICGAGS-SFLRHGYAIHMYTANKSMDNCAFCNADGDF 169 (474)
Q Consensus 125 ~Dfv~gl~tl~g~gD-~~~~~G~ai~~y~~~~sM~~~~f~NaDGDe 169 (474)
.|=..|.|.|..-|+ ...-+|..|-+|.+|.+|.+|+.+|+++.+
T Consensus 80 ~d~ptgQRlIvsGGegtss~~GA~itL~Gan~s~~rRavyna~ehl 125 (160)
T PF12219_consen 80 TDNPTGQRLIVSGGEGTSSSDGAQITLHGANSSTPRRAVYNANEHL 125 (160)
T ss_dssp SS-GGG-EEEEESSSSSSGGGB-EEEEEBTTSSSTTEEEEE-SEEE
T ss_pred CCCCcccEEEEeCCCCcccCCCcEEEEecCCCCCccceeeeccccc
Confidence 466678877655555 445689999999999999999999998754
No 69
>PRK15185 transcriptional regulator HilD; Provisional
Probab=61.83 E-value=12 Score=39.13 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=37.5
Q ss_pred EEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECC
Q 011934 169 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 208 (474)
Q Consensus 169 eLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~ 208 (474)
.|+....|.+.|+++.|.+.+-++.+|+|+|++..-|.+.
T Consensus 51 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~k~~~i~~~~~ 90 (309)
T PRK15185 51 TLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLE 90 (309)
T ss_pred EEEEEccceEEEEcCCceEEeCCCceEEEeCCcEEEEEhh
Confidence 5889999999999999999999999999999999988764
No 70
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=54.50 E-value=99 Score=28.42 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=51.2
Q ss_pred EEEEeCCCCC-ccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEEC----CCCCeeEEEEEEc
Q 011934 149 HMYTANKSMD-NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL----PDGPSRGYIAEIF 220 (474)
Q Consensus 149 ~~y~~~~sM~-~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l----~~g~~rgyi~E~~ 220 (474)
++|+.+++.. ...++ -=.|.++-||+=++...--...+.+|+++|.+-.+-...+. ++.|-.++.++.-
T Consensus 7 ~i~r~~~~~~~~~~~y---~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld 80 (155)
T PF06719_consen 7 SIFRSSRPTPPMPCVY---EPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD 80 (155)
T ss_pred EEEEECCCCCCcceec---CCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence 5667776652 22333 34689999999999999899999999999998887776554 3457777777763
No 71
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=54.19 E-value=12 Score=31.34 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=15.5
Q ss_pred eeeecCCcEEEEcceeEEEEE
Q 011934 186 KLEVSPGEIAVLPQGFRFAVS 206 (474)
Q Consensus 186 ~L~v~pGd~vVIPRGi~frv~ 206 (474)
++.-+|||+||||-|.-+.|.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEE
T ss_pred cceECCCCEEEECCCceEEEE
Confidence 566899999999999999884
No 72
>PLN02288 mannose-6-phosphate isomerase
Probab=52.75 E-value=31 Score=37.14 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=44.3
Q ss_pred cccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeecee--eeecCCcEEEEcceeEE
Q 011934 144 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK--LEVSPGEIAVLPQGFRF 203 (474)
Q Consensus 144 ~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~--L~v~pGd~vVIPRGi~f 203 (474)
..+++..+..+.... ..+...+|=.++++.+|+++|...-+. +.+++|+.++||.+...
T Consensus 332 ~eF~v~~~~l~~~~~-~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~ 392 (394)
T PLN02288 332 DEFEVDHCDVPPGAS-VVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEI 392 (394)
T ss_pred cceEEEEEEeCCCCe-EeecCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcc
Confidence 456666666654422 134457898999999999999887777 77999999999987654
No 73
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=51.41 E-value=41 Score=32.70 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=59.2
Q ss_pred cCCCCcceEEeec-CCCCCceEEEeeeeCCccccCCCCCCCCCCCCCcc-cccceeeecccc---ccc------CCcCCC
Q 011934 307 HGDPSINTVLTAP-TDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCM-SEFMGLIRGGYE---AKA------DGFLPG 375 (474)
Q Consensus 307 H~dPSi~tvltap-s~~pG~av~dFviF~PRw~~ae~tfRpPYyHrNv~-sE~mgyi~G~y~---ar~------~g~~pG 375 (474)
|.|+.+|.|.... +...|-...+.++.+|.-...|-...++=||.+.+ .|+++.+.|.-- ... .-+.||
T Consensus 48 ~~d~~~Y~v~~~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pG 127 (191)
T PRK04190 48 TEDTVVYEVYAIEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPG 127 (191)
T ss_pred cCCceEEEEEEecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCC
Confidence 4567788886544 34456677788888888876777778888999887 599999998821 111 247899
Q ss_pred eeeeecCCCCC
Q 011934 376 GASLHSCMTPH 386 (474)
Q Consensus 376 ~~SLHp~g~pH 386 (474)
.+-+=|.+..|
T Consensus 128 d~v~IPpg~~H 138 (191)
T PRK04190 128 TVVYVPPYWAH 138 (191)
T ss_pred CEEEECCCCcE
Confidence 99999999999
No 74
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=47.50 E-value=59 Score=34.85 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=44.1
Q ss_pred ccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeE-EEE
Q 011934 145 GYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAV 205 (474)
Q Consensus 145 G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~-frv 205 (474)
.+++..+..... ....+.+|=.++++.+|+++|.+.-+.+.+++|+.++||.+.. +.+
T Consensus 320 ~F~~~~~~l~~~---~~~~~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQ---PTTLSQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCc---eEEecCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE
Confidence 366666665431 2344557778999999999999887889999999999998764 444
No 75
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=45.26 E-value=62 Score=27.81 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=42.4
Q ss_pred cCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011934 164 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 219 (474)
Q Consensus 164 NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 219 (474)
..+-.-++|+.+|++.|..+- ..+.+|+.+++-.|...++...+..+|.+++--
T Consensus 17 ~~~~~~~iyv~~G~~~v~~~~--~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~G 70 (104)
T PF05726_consen 17 PPGHNAFIYVLEGSVEVGGEE--DPLEAGQLVVLEDGDEIELTAGEEGARFLLLGG 70 (104)
T ss_dssp ETT-EEEEEEEESEEEETTTT--EEEETTEEEEE-SECEEEEEESSSSEEEEEEEE
T ss_pred CCCCEEEEEEEECcEEECCCc--ceECCCcEEEECCCceEEEEECCCCcEEEEEEc
Confidence 345567899999998775544 679999999999999999988657889998863
No 76
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=40.63 E-value=36 Score=34.99 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=17.0
Q ss_pred eeeecCCcEEEEcceeEEEEECCC
Q 011934 186 KLEVSPGEIAVLPQGFRFAVSLPD 209 (474)
Q Consensus 186 ~L~v~pGd~vVIPRGi~frv~l~~ 209 (474)
...++|||++.||||+.+.....+
T Consensus 177 ~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 177 EVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp EEEE-TT-EEEE-TT-EEEEEESS
T ss_pred EEEECCCCEEEECCCccCCCCCCC
Confidence 467999999999999999998744
No 77
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=39.36 E-value=1.6e+02 Score=23.83 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=33.6
Q ss_pred EEEEEeCcEEEEeecee---eeecCCcEEEEcceeEEEEEC--CCCCeeEEEEE
Q 011934 170 LVVPQKGRLWIATECGK---LEVSPGEIAVLPQGFRFAVSL--PDGPSRGYIAE 218 (474)
Q Consensus 170 Li~pq~G~l~l~TEfG~---L~v~pGd~vVIPRGi~frv~l--~~g~~rgyi~E 218 (474)
-+...+|.+.+.+.-+. +.|+-+...+..||+.|++.+ .++..+.-++|
T Consensus 41 ~~~L~~G~~~~~~~~~~~~~~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~ 94 (98)
T PF04773_consen 41 RLRLLSGEILFDVSPGKKRPFEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLE 94 (98)
T ss_pred EEEEcCCCEEEEEcccCCCCEEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEe
Confidence 45667787777765443 788888889999999996654 34444444444
No 78
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=38.08 E-value=61 Score=31.05 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.8
Q ss_pred ceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 219 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~ 219 (474)
....++.-.|+|..+|+..|....+.+.+.+||-++|-......+ ++..+.+++|+
T Consensus 129 ~~~~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l---~~~g~ll~v~i 184 (184)
T PF05962_consen 129 LKLPAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPL---TGDGQLLWVSI 184 (184)
T ss_dssp E-EE--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEE---EEECCEEEEE-
T ss_pred EeeCCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEe---cCCeeEEEEeC
Confidence 445677888899999998887778899999999999877554433 44667777774
No 79
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=36.18 E-value=1.4e+02 Score=31.49 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=48.4
Q ss_pred cccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcce-eEEEEE
Q 011934 144 HGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG-FRFAVS 206 (474)
Q Consensus 144 ~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRG-i~frv~ 206 (474)
+.+++..+..+. ...+.+.++=.|+++.+|.+.|.-....+.+++|+-++||.. -.|.++
T Consensus 240 ~~F~l~~~~i~~---~~~~~~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~ 300 (312)
T COG1482 240 EDFALYKWDISG---TAEFIKQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIE 300 (312)
T ss_pred cceEEEEEeccC---hhhhccCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEE
Confidence 345556666663 226677889999999999999999999999999999999988 556664
No 80
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=35.96 E-value=33 Score=36.02 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=29.1
Q ss_pred eeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCC
Q 011934 182 TECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 222 (474)
Q Consensus 182 TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~ 222 (474)
.-+=++.++|||.++||.|+.+-+ .+|.++|+-..
T Consensus 155 ~lLn~v~lkpGe~~fl~Agt~HA~------~~G~~lEvmqn 189 (312)
T COG1482 155 LLLNRVKLKPGEAFFLPAGTPHAY------LKGLVLEVMQN 189 (312)
T ss_pred hhhcEEecCCCCEEEecCCCceee------ccceEEEEEec
Confidence 456678899999999999998887 45899998643
No 81
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=35.25 E-value=15 Score=35.60 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=31.8
Q ss_pred CeEeeecCCccceeeccCCcccccccccccCCCCcceEEeec-CCCCCceEEEeeeeCCc
Q 011934 278 FNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAP-TDKPGVALLDFVIFPPR 336 (474)
Q Consensus 278 fDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltap-s~~pG~av~dFviF~PR 336 (474)
+|--||.|.++.|++|+.- .+..+ ..+=.--++++| +...|....|.++|...
T Consensus 111 LNFtGWR~~WV~y~~Dm~g-~~~~g-----~~~md~l~i~AP~~~~~G~lf~D~l~~~~~ 164 (178)
T PF09092_consen 111 LNFTGWRAAWVSYERDMQG-RPEEG-----SKDMDSLRITAPANDPSGTLFFDRLIFSVK 164 (178)
T ss_dssp ---SEEEEEEEETTTTSEE----TT----------EEEEE--TTSSEEEEEEEEEEEEEE
T ss_pred eecccceeeeeeehhhccC-CcccC-----cceeeEEEEEccccCCCccEEEEEEeeccc
Confidence 4667999999999999764 22221 011223578888 44579999999998754
No 82
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=34.56 E-value=2.1e+02 Score=28.93 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=41.1
Q ss_pred EEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 147 AIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 147 ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
.|.+|.++..=. ..++. -+-|+-.|.-+-.+-.+.|.+.|||-|.|+.|+-+++-...|. .+|=|+-
T Consensus 121 ~i~l~~s~~~~~----~~~~~-~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 121 VIELYNSDPDGE----LDADT-DVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIYHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEEEB--TTS----SB-SS--EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEEEEEEE-TTS--EEEEEEE
T ss_pred EEEEEeccCCCc----cccCC-CeEEecCCcEEEecCCceEEeCCCCeEeeCCCCeeeEEecCCC--EEEEeee
Confidence 347777764210 11222 3556778888888889999999999999999999999764444 6777764
No 83
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=31.72 E-value=1.9e+02 Score=25.49 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.5
Q ss_pred ceecCCCCEEEEEEeCcEEEEe--eceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEE
Q 011934 161 AFCNADGDFLVVPQKGRLWIAT--ECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 218 (474)
Q Consensus 161 ~f~NaDGDeLi~pq~G~l~l~T--EfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E 218 (474)
+-.|-..-|+.-+..|.+.++= +-....+++||--.||....|++...+ .--|+|+
T Consensus 35 Y~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~--~~~Y~C~ 92 (94)
T PF06865_consen 35 YTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKE--PTAYLCS 92 (94)
T ss_dssp EEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS---EEEEEE
T ss_pred EEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECc--ceeeEEE
Confidence 6677788899999999998874 345788999999999999999998854 5688886
No 84
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=31.42 E-value=67 Score=29.32 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.4
Q ss_pred EEEeeceeeeecCCcEEEEc
Q 011934 179 WIATECGKLEVSPGEIAVLP 198 (474)
Q Consensus 179 ~l~TEfG~L~v~pGd~vVIP 198 (474)
+-....-.+.+.||+|+|||
T Consensus 105 ~~rev~~~~~L~pG~YvIIP 124 (150)
T cd00214 105 NTREVSLRFRLPPGEYVIVP 124 (150)
T ss_pred cccEEEEEEEcCCCCEEEEe
Confidence 33445556789999999999
No 85
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=30.86 E-value=47 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=17.0
Q ss_pred eeeecCCcEEEEcceeEEEEECC
Q 011934 186 KLEVSPGEIAVLPQGFRFAVSLP 208 (474)
Q Consensus 186 ~L~v~pGd~vVIPRGi~frv~l~ 208 (474)
...++|||++.||.|--++|.-.
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEES
T ss_pred EEEECCCeEEEECCCCeEEEEEc
Confidence 34689999999999999999765
No 86
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=28.99 E-value=96 Score=31.40 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=48.9
Q ss_pred eeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEE-EEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCC
Q 011934 132 YTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLV-VPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 210 (474)
Q Consensus 132 ~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi-~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g 210 (474)
-++.--|-|..|.|.-| +.- .++|+---|||++ |+.+|..+ .|-++.||+-.+|.-+-++=.- -.
T Consensus 34 lkVm~VGGPN~RkdyHi-----eeg--eE~FyQ~KGdMvLKVie~g~~r------DivI~qGe~flLParVpHSPqR-Fa 99 (279)
T KOG3995|consen 34 LKVMFVGGPNTRKDYHI-----EEG--EEVFYQLKGDMVLKVLEQGKHR------DVVIRQGEIFLLPARVPHSPQR-FA 99 (279)
T ss_pred eEEEEecCCCccccccc-----CCc--chhheeecCceEEeeeccCcce------eeEEecCcEEEeccCCCCChhh-hc
Confidence 34455566777777544 222 4488899999876 55666666 7889999999999776553211 11
Q ss_pred CeeEEEEEE
Q 011934 211 PSRGYIAEI 219 (474)
Q Consensus 211 ~~rgyi~E~ 219 (474)
.+-|+|+|-
T Consensus 100 ntvGlVVEr 108 (279)
T KOG3995|consen 100 NTVGLVVER 108 (279)
T ss_pred cceeEEEEe
Confidence 356788875
No 87
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=37 Score=31.91 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.3
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011934 184 CGKLEVSPGEIAVLPQGFRFA 204 (474)
Q Consensus 184 fG~L~v~pGd~vVIPRGi~fr 204 (474)
+|--.|.||+|+|=+||++|-
T Consensus 53 ~egq~V~~G~IIvrQRgtkfH 73 (144)
T KOG4600|consen 53 YEGQSVIPGNIIVRQRGTKFH 73 (144)
T ss_pred cCCeeeecccEEEEecccccC
Confidence 445568999999999999884
No 88
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=26.27 E-value=1.7e+02 Score=29.29 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=41.1
Q ss_pred EEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEc
Q 011934 169 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 220 (474)
Q Consensus 169 eLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~ 220 (474)
.+-||-+|...=.|--|.|+..||+-+.||.|+.+++-..+|- -+|-|+.
T Consensus 137 ~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~HsFwae~g~--vlvgEvS 186 (225)
T COG3822 137 DVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLYHSFWAEEGG--VLVGEVS 186 (225)
T ss_pred CeEecCCCcEEEeccceeEEECCCCcEecCCCceeeeeecCCc--EEEEEEe
Confidence 3678889999999999999999999999999999998653433 5666664
No 89
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=25.04 E-value=73 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEeCcEEEEeece-eeeecCCcEEE
Q 011934 172 VPQKGRLWIATECG-KLEVSPGEIAV 196 (474)
Q Consensus 172 ~pq~G~l~l~TEfG-~L~v~pGd~vV 196 (474)
+=.+|+|.|+|+-| ...+..||+.+
T Consensus 22 Id~~G~L~v~~~~g~~~~i~sGdv~~ 47 (48)
T PF02237_consen 22 IDDDGALLVRTEDGSIRTISSGDVSL 47 (48)
T ss_dssp EETTSEEEEEETTEEEEEESSSEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEEEEEEe
Confidence 34578999999999 77799999753
No 90
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=24.95 E-value=56 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.8
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011934 184 CGKLEVSPGEIAVLPQGFRFA 204 (474)
Q Consensus 184 fG~L~v~pGd~vVIPRGi~fr 204 (474)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~gq~V~~G~IivRQRGtk~h 46 (83)
T TIGR00062 26 AGGQFVRAGSIIVRQRGTKFH 46 (83)
T ss_pred cCCEEEcCCcEEEEcCCceEC
Confidence 455679999999999999984
No 91
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=24.65 E-value=2.9e+02 Score=28.50 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=49.3
Q ss_pred ccEEEEEEeCCCCCccceecCCCCEEEEEEeCcEEEEe---ece----eeee---cCCcEEEEcceeEEEEECCCCCeeE
Q 011934 145 GYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIAT---ECG----KLEV---SPGEIAVLPQGFRFAVSLPDGPSRG 214 (474)
Q Consensus 145 G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G~l~l~T---EfG----~L~v---~pGd~vVIPRGi~frv~l~~g~~rg 214 (474)
|+.++--.+.++.. --..|=+-+||+.+|..+|.. .|| ++.| .|=|-|.||.|..|++.. +..++.
T Consensus 30 GF~~~~L~~Ges~~---~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA-~t~~~v 105 (270)
T COG3718 30 GFRLLRLAAGESAT---EETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTA-TTDLEV 105 (270)
T ss_pred EEEEEEccCCCccc---ccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEe-ecceEE
Confidence 44444444444431 123445667888999999873 344 3333 355999999999999987 556789
Q ss_pred EEEEEcC
Q 011934 215 YIAEIFG 221 (474)
Q Consensus 215 yi~E~~~ 221 (474)
-+|++.+
T Consensus 106 AvC~AP~ 112 (270)
T COG3718 106 AVCSAPG 112 (270)
T ss_pred EEEeCCC
Confidence 9999985
No 92
>KOG4046 consensus RNase MRP and P, subunit POP4/p29 [RNA processing and modification]
Probab=23.88 E-value=80 Score=31.76 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=36.2
Q ss_pred EeCcEEEEe-eceeeeecCCcEEEEcc-eeEEEEECCCCCeeEEEEEEcCCeeee
Q 011934 174 QKGRLWIAT-ECGKLEVSPGEIAVLPQ-GFRFAVSLPDGPSRGYIAEIFGTHFQL 226 (474)
Q Consensus 174 q~G~l~l~T-EfG~L~v~pGd~vVIPR-Gi~frv~l~~g~~rgyi~E~~~~~~~L 226 (474)
.+|-..++| -|=.|-+....++|||. |..|++.+ +++ +++.+.||.||.+
T Consensus 153 l~GI~l~etkh~fklitke~ri~~IPK~~cVf~~~~-g~~--~~~f~i~g~~f~~ 204 (224)
T KOG4046|consen 153 LLGIVLLETKHFFKLITKENRIVVIPKKECVFAFIT-GVQ--GLMFSIFGDHFGI 204 (224)
T ss_pred eeeEEeeecchhhhhhccCCeEEEEeccCcEEEEEe-CCc--cEEEEEecccccc
Confidence 344444443 34466677779999995 89999987 323 5999999999866
No 93
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=23.59 E-value=1.1e+02 Score=33.17 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCcEEEEcceeEE----EEECCCCCeeEEEEEEcCCeeeeCC----------CCCCCCCCCCCCCC
Q 011934 191 PGEIAVLPQGFRF----AVSLPDGPSRGYIAEIFGTHFQLPD----------LGPIGANGLAAPRD 242 (474)
Q Consensus 191 pGd~vVIPRGi~f----rv~l~~g~~rgyi~E~~~~~~~LPe----------lGpiG~nglan~RD 242 (474)
-|..++||||.+. +-.+..|-.|.+|+-. .+.+|+ -+++|..|+-..-|
T Consensus 216 ~G~~lLIPkGS~liG~Y~s~v~~GQ~Rv~V~W~---Ri~~P~G~~I~L~spgaD~lG~aG~~G~Vd 278 (376)
T PRK13855 216 TNNVVLLDRGTTVVGEIQRGLQQGDARVFVLWD---RAETPDHAMISLSSPGADELGRSGLPGTVD 278 (376)
T ss_pred CCCEEEecccCEEEEEeCCCCccccceeeeeee---eEeCCCCcEEeCCCCCcccccCCCCCcccc
Confidence 4556667777663 3334445667776653 245553 45677777665433
No 94
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=22.86 E-value=4.7e+02 Score=24.19 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=45.1
Q ss_pred ccccEEEEEEeCCCCCccceecCCCCEEEEEEeC-cE--EEEeeceeeee-------cCCc--EEEEcceeEEEEECCCC
Q 011934 143 RHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKG-RL--WIATECGKLEV-------SPGE--IAVLPQGFRFAVSLPDG 210 (474)
Q Consensus 143 ~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~pq~G-~l--~l~TEfG~L~v-------~pGd--~vVIPRGi~frv~l~~g 210 (474)
|.-+..-.|..+++-.. .|--.+.||+++-|.| .+ .+..+-|..+. .+|+ -+|||.|+-+.-++.++
T Consensus 38 R~~~T~Iy~LL~~~~~S-~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 38 RSASTSIYYLLTPGEFS-AWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp EES-EEEEEEEETTBEE-EEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred cccceEEEEEEcCCCCC-ccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 44444444555544323 5555599999999999 33 33444555432 3343 48899999997766444
Q ss_pred CeeEEEEEEc
Q 011934 211 PSRGYIAEIF 220 (474)
Q Consensus 211 ~~rgyi~E~~ 220 (474)
..-.+|-++-
T Consensus 117 ~~y~Lvsc~V 126 (139)
T PF06172_consen 117 GDYSLVSCTV 126 (139)
T ss_dssp SSEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 4556665554
No 95
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=22.82 E-value=64 Score=27.85 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.4
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011934 184 CGKLEVSPGEIAVLPQGFRFA 204 (474)
Q Consensus 184 fG~L~v~pGd~vVIPRGi~fr 204 (474)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~g~~V~~G~IivRQRGtk~~ 46 (82)
T PRK05435 26 FGGQFVKAGNIIVRQRGTKFH 46 (82)
T ss_pred cCCEEEcCCcEEEEeCCCeEC
Confidence 445568999999999999884
No 96
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=22.37 E-value=58 Score=33.19 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=27.3
Q ss_pred eeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcC
Q 011934 182 TECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 221 (474)
Q Consensus 182 TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~ 221 (474)
.-+=.+.|+|||.+.||.|+.+.. ..+.++|+-.
T Consensus 148 ~~ln~v~v~~Gd~i~ipaGt~HA~------~g~~~~Eiq~ 181 (302)
T TIGR00218 148 LLLNRIKLKPGDFFYVPSGTPHAY------KGGLVLEVMQ 181 (302)
T ss_pred HHhcccccCCCCEEEeCCCCcccc------cCceEEEEEc
Confidence 456678899999999999998863 3588888853
No 97
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=22.25 E-value=18 Score=32.45 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCCCCcccccceeeeccccc---ccC-----------C--cCCCeeeeecCCCCCCCChHHHHHHHhcCCC
Q 011934 339 VAEHTFRPPYYHRNCMSEFMGLIRGGYEA---KAD-----------G--FLPGGASLHSCMTPHGPDTKTYEATIARGSE 402 (474)
Q Consensus 339 ~ae~tfRpPYyHrNv~sE~mgyi~G~y~a---r~~-----------g--~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~ 402 (474)
..++++++|.|| -.+|+++.+.|.-.. ..+ . +++|.+..-|.|.+|=-- +.+. +
T Consensus 41 i~pg~~~~Ph~h--~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~------n~~~--~ 110 (144)
T PF00190_consen 41 IEPGGLRAPHYH--NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWII------NDGD--D 110 (144)
T ss_dssp EETTEEEEEEEE--SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEE------ECSS--S
T ss_pred hhcCCccceeEe--eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEE------cCCC--C
Confidence 368999999888 346999999887431 001 2 889999999999999211 1110 1
Q ss_pred CCCceeccceeEEeeeccCc
Q 011934 403 AGPYKITDTMAFMFESCLIP 422 (474)
Q Consensus 403 l~P~~~~~~lAfMfET~~~l 422 (474)
+....++|+|..+-
T Consensus 111 ------~~~~~~~f~~~~~~ 124 (144)
T PF00190_consen 111 ------EALVLIIFDTNNPP 124 (144)
T ss_dssp ------SEEEEEEEEESSTT
T ss_pred ------CCEEEEEEECCCCc
Confidence 35567788888873
No 98
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=21.71 E-value=71 Score=27.80 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.4
Q ss_pred ceeeeecCCcEEEEcceeEEE
Q 011934 184 CGKLEVSPGEIAVLPQGFRFA 204 (474)
Q Consensus 184 fG~L~v~pGd~vVIPRGi~fr 204 (474)
+|--.|.||.|+|=+||++|-
T Consensus 26 ~~gq~V~~G~IivRQRGtk~h 46 (86)
T CHL00121 26 FGGEKVSAGNILIRQRGTKFK 46 (86)
T ss_pred cCCEEEcCCcEEEEcCCCeEC
Confidence 445568999999999999884
No 99
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=21.60 E-value=3.2e+02 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=16.7
Q ss_pred eeeeecCCcEEEEcceeEEEE
Q 011934 185 GKLEVSPGEIAVLPQGFRFAV 205 (474)
Q Consensus 185 G~L~v~pGd~vVIPRGi~frv 205 (474)
+.+.+.||+.++|+-|.+..+
T Consensus 12 ~~~~i~P~~~~~v~t~~~i~~ 32 (92)
T cd07557 12 EGIVLPPGETVLVPTGEAIEL 32 (92)
T ss_pred CCEEEcCCCEEEEEEeEEEEc
Confidence 567889999999998876555
No 100
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=21.07 E-value=3.5e+02 Score=23.41 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEc-ceeEEEEECCCCCeeEEEEEEcCCeeee
Q 011934 194 IAVLP-QGFRFAVSLPDGPSRGYIAEIFGTHFQL 226 (474)
Q Consensus 194 ~vVIP-RGi~frv~l~~g~~rgyi~E~~~~~~~L 226 (474)
..+|| .+..|++.+++| ..++++|.++..
T Consensus 50 ~~~IpK~~~vF~f~l~~~----~~~~i~G~~l~~ 79 (92)
T smart00538 50 VKTVPKDGAVFEFELPGG----EIVRIDGDRLVG 79 (92)
T ss_pred EEEEECCCeEEEEEECCC----eEEEEECceeee
Confidence 45565 578999999764 778888887643
No 101
>PRK15044 transcriptional regulator SirC; Provisional
Probab=20.88 E-value=2.5e+02 Score=29.45 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=40.3
Q ss_pred EEEEEEeCcEEEEeecee-eeecCCcEEEEcceeEEEEECC--CCCeeEEEEEEc
Q 011934 169 FLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLP--DGPSRGYIAEIF 220 (474)
Q Consensus 169 eLi~pq~G~l~l~TEfG~-L~v~pGd~vVIPRGi~frv~l~--~g~~rgyi~E~~ 220 (474)
.|+-..+|.++|++|.|. +....-+++|+|||-+--+... ++.....++|+.
T Consensus 42 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~l~k~~~i~~~~~~~~~~~~~~~~~i~ 96 (295)
T PRK15044 42 LLFKLNKGSLRIENEFGEFIEQSAPCLFLLEKDQTITLSMSEIEGHIDFSSLEVS 96 (295)
T ss_pred EEEEEecCeEEEEecCCceEEecCCeeEEEeCCCEEEEeHhhhCCcceEEEEEcC
Confidence 588899999999999995 5566678999999988777653 345566666664
Done!