Query 011935
Match_columns 474
No_of_seqs 445 out of 3062
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 2.2E-97 5E-102 745.5 38.8 434 13-451 2-442 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2E-41 4.3E-46 331.1 17.6 215 204-424 143-366 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 7.3E-37 1.6E-41 318.4 16.8 211 205-424 427-646 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 4E-36 8.7E-41 304.6 15.7 206 208-423 300-514 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 7.1E-35 1.5E-39 299.6 21.4 212 206-424 505-727 (802)
6 KOG0731 AAA+-type ATPase conta 100.0 1.6E-34 3.4E-39 309.3 19.7 213 207-424 306-527 (774)
7 KOG0727 26S proteasome regulat 100.0 1.1E-33 2.3E-38 264.4 15.4 214 205-424 148-370 (408)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 2.1E-33 4.6E-38 288.8 17.4 207 208-422 186-403 (802)
9 KOG0736 Peroxisome assembly fa 100.0 1.1E-32 2.4E-37 289.8 20.5 212 206-422 666-887 (953)
10 KOG0726 26S proteasome regulat 100.0 1.7E-33 3.7E-38 267.7 9.2 214 205-424 178-400 (440)
11 PTZ00454 26S protease regulato 100.0 9E-32 1.9E-36 277.3 19.9 214 205-424 138-360 (398)
12 KOG0728 26S proteasome regulat 100.0 5.9E-32 1.3E-36 252.5 12.9 185 205-393 140-332 (404)
13 COG0465 HflB ATP-dependent Zn 100.0 9E-32 1.9E-36 283.8 15.3 248 207-461 145-415 (596)
14 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-31 6.6E-36 261.1 16.4 209 207-424 207-426 (491)
15 KOG0729 26S proteasome regulat 100.0 7.2E-31 1.6E-35 247.2 14.7 218 202-425 167-393 (435)
16 TIGR03689 pup_AAA proteasome A 100.0 1.5E-30 3.3E-35 273.4 18.6 184 205-394 175-380 (512)
17 KOG0652 26S proteasome regulat 100.0 1.3E-30 2.7E-35 244.9 14.4 209 205-419 164-381 (424)
18 PRK03992 proteasome-activating 100.0 4.5E-30 9.7E-35 265.4 20.0 214 205-424 124-346 (389)
19 KOG0735 AAA+-type ATPase [Post 100.0 1E-29 2.2E-34 265.2 18.2 216 200-424 653-879 (952)
20 PTZ00361 26 proteosome regulat 100.0 7.2E-30 1.6E-34 264.9 16.7 215 204-424 175-398 (438)
21 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-29 2.4E-34 270.7 18.7 211 206-423 49-268 (495)
22 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-29 6.3E-34 279.1 21.5 209 207-423 448-665 (733)
23 CHL00195 ycf46 Ycf46; Provisio 100.0 2.1E-29 4.6E-34 265.1 18.9 207 207-424 223-438 (489)
24 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-29 2.5E-34 238.4 12.0 205 207-425 116-329 (368)
25 CHL00176 ftsH cell division pr 100.0 8.4E-29 1.8E-33 268.0 18.5 211 206-423 177-396 (638)
26 COG0464 SpoVK ATPases of the A 100.0 2.2E-28 4.7E-33 261.1 19.5 212 206-424 236-456 (494)
27 KOG0739 AAA+-type ATPase [Post 100.0 5.5E-29 1.2E-33 237.7 9.9 203 206-419 127-339 (439)
28 KOG0651 26S proteasome regulat 100.0 3E-28 6.4E-33 234.1 12.4 208 210-423 130-346 (388)
29 PF14363 AAA_assoc: Domain ass 100.0 6.2E-28 1.3E-32 200.9 11.2 97 35-132 1-98 (98)
30 TIGR01242 26Sp45 26S proteasom 100.0 2.3E-27 5E-32 243.7 17.8 213 205-423 115-336 (364)
31 KOG0737 AAA+-type ATPase [Post 99.9 1.8E-27 4E-32 234.4 16.0 222 208-443 88-319 (386)
32 PLN00020 ribulose bisphosphate 99.9 1E-26 2.3E-31 231.3 20.3 198 206-413 109-329 (413)
33 PRK10733 hflB ATP-dependent me 99.9 9.3E-27 2E-31 254.4 16.7 211 207-424 147-366 (644)
34 CHL00206 ycf2 Ycf2; Provisiona 99.9 9.4E-27 2E-31 264.9 16.2 180 233-423 1617-1850(2281)
35 TIGR01243 CDC48 AAA family ATP 99.9 1.1E-24 2.4E-29 242.4 18.5 207 207-422 173-388 (733)
36 KOG0741 AAA+-type ATPase [Post 99.9 4.1E-25 8.8E-30 224.6 12.9 209 206-421 213-446 (744)
37 KOG0732 AAA+-type ATPase conta 99.9 1.2E-24 2.6E-29 239.0 15.8 207 206-421 259-480 (1080)
38 KOG0740 AAA+-type ATPase [Post 99.9 1E-24 2.2E-29 222.0 13.1 211 206-425 147-366 (428)
39 KOG0730 AAA+-type ATPase [Post 99.9 4.4E-24 9.5E-29 223.2 15.9 206 207-424 180-395 (693)
40 KOG0742 AAA+-type ATPase [Post 99.8 9.2E-21 2E-25 188.0 11.7 227 148-394 296-530 (630)
41 PF05496 RuvB_N: Holliday junc 99.8 3.5E-19 7.5E-24 167.3 18.1 165 205-395 17-195 (233)
42 PF00004 AAA: ATPase family as 99.8 3.5E-20 7.7E-25 161.6 9.7 123 249-378 1-132 (132)
43 CHL00181 cbbX CbbX; Provisiona 99.8 3.5E-17 7.6E-22 162.5 20.3 169 212-395 23-212 (287)
44 TIGR02881 spore_V_K stage V sp 99.8 2.2E-17 4.7E-22 162.2 18.2 169 211-395 5-194 (261)
45 PRK00080 ruvB Holliday junctio 99.8 1.8E-17 3.9E-22 168.1 16.9 187 206-420 19-220 (328)
46 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-18 2.5E-23 169.0 7.6 181 208-393 138-341 (423)
47 TIGR02880 cbbX_cfxQ probable R 99.7 8.8E-17 1.9E-21 159.6 20.0 170 211-395 20-211 (284)
48 TIGR00635 ruvB Holliday juncti 99.7 4.7E-17 1E-21 163.2 16.2 160 210-395 2-175 (305)
49 COG2255 RuvB Holliday junction 99.7 3.5E-16 7.7E-21 149.9 17.0 164 206-395 20-197 (332)
50 PF05673 DUF815: Protein of un 99.7 4.3E-16 9.2E-21 148.4 16.4 174 198-395 13-210 (249)
51 TIGR00763 lon ATP-dependent pr 99.7 6.1E-16 1.3E-20 173.2 18.2 159 213-393 321-506 (775)
52 COG0466 Lon ATP-dependent Lon 99.7 9.6E-16 2.1E-20 162.5 17.5 206 214-450 325-560 (782)
53 PRK14962 DNA polymerase III su 99.7 1.3E-15 2.9E-20 160.6 17.7 154 205-393 7-190 (472)
54 PRK04195 replication factor C 99.7 2E-15 4.3E-20 160.8 19.2 162 204-395 6-176 (482)
55 COG2256 MGS1 ATPase related to 99.6 1.1E-15 2.4E-20 152.9 13.3 152 205-392 17-176 (436)
56 PRK07003 DNA polymerase III su 99.6 3.7E-15 8E-20 161.0 18.3 156 205-395 9-194 (830)
57 TIGR02639 ClpA ATP-dependent C 99.6 6E-16 1.3E-20 172.4 12.6 159 207-394 177-360 (731)
58 PRK14956 DNA polymerase III su 99.6 3.5E-15 7.5E-20 155.6 16.2 156 205-395 11-196 (484)
59 PRK12323 DNA polymerase III su 99.6 2.1E-15 4.5E-20 161.0 14.4 156 205-395 9-199 (700)
60 PRK14961 DNA polymerase III su 99.6 1.1E-14 2.5E-19 149.6 17.5 155 206-395 10-194 (363)
61 PRK14960 DNA polymerase III su 99.6 7.3E-15 1.6E-19 157.2 16.1 156 205-395 8-193 (702)
62 KOG2004 Mitochondrial ATP-depe 99.6 1.2E-14 2.5E-19 153.6 16.6 160 213-394 412-598 (906)
63 TIGR03345 VI_ClpV1 type VI sec 99.6 5.9E-15 1.3E-19 165.9 14.4 159 206-394 181-365 (852)
64 PRK13342 recombination factor 99.6 1.8E-14 3.9E-19 150.6 16.8 151 205-394 5-166 (413)
65 PHA02544 44 clamp loader, smal 99.6 4.6E-14 1E-18 142.2 19.1 158 198-392 9-173 (316)
66 PRK06645 DNA polymerase III su 99.6 2.3E-14 4.9E-19 152.0 17.4 156 205-395 14-203 (507)
67 PLN03025 replication factor C 99.6 2.2E-14 4.7E-19 145.1 16.2 155 205-395 6-174 (319)
68 PRK14964 DNA polymerase III su 99.6 1.9E-14 4.2E-19 151.4 16.3 156 205-395 6-191 (491)
69 PRK14958 DNA polymerase III su 99.6 2E-14 4.3E-19 153.2 15.4 156 205-395 9-194 (509)
70 PRK07994 DNA polymerase III su 99.6 3.4E-14 7.3E-19 153.8 17.0 154 206-394 10-193 (647)
71 PRK14949 DNA polymerase III su 99.6 3.6E-14 7.7E-19 156.1 16.9 154 206-394 10-193 (944)
72 PRK10865 protein disaggregatio 99.6 1.1E-14 2.4E-19 164.2 12.6 160 206-395 172-357 (857)
73 TIGR02397 dnaX_nterm DNA polym 99.6 5.4E-14 1.2E-18 143.9 16.5 156 205-395 7-192 (355)
74 KOG0735 AAA+-type ATPase [Post 99.6 3E-14 6.5E-19 150.2 14.2 193 212-419 408-613 (952)
75 PRK14963 DNA polymerase III su 99.6 8.7E-14 1.9E-18 148.0 18.0 156 205-395 7-191 (504)
76 PRK07940 DNA polymerase III su 99.6 8.3E-14 1.8E-18 143.8 17.2 156 209-390 2-187 (394)
77 TIGR02928 orc1/cdc6 family rep 99.6 1.8E-13 3.9E-18 140.6 19.6 158 211-393 14-213 (365)
78 PRK05563 DNA polymerase III su 99.6 8.5E-14 1.8E-18 150.2 17.8 156 205-395 9-194 (559)
79 TIGR03346 chaperone_ClpB ATP-d 99.6 2.3E-14 5E-19 162.0 14.1 203 206-445 167-398 (852)
80 PRK11034 clpA ATP-dependent Cl 99.6 1.3E-14 2.8E-19 160.5 11.6 158 209-395 183-365 (758)
81 PRK08691 DNA polymerase III su 99.6 4.7E-14 1E-18 152.2 15.5 156 205-395 9-194 (709)
82 KOG0989 Replication factor C, 99.6 3.2E-14 6.9E-19 137.9 12.2 149 205-389 29-198 (346)
83 PRK05896 DNA polymerase III su 99.5 7.4E-14 1.6E-18 149.3 16.0 155 205-394 9-193 (605)
84 PRK14951 DNA polymerase III su 99.5 9E-14 1.9E-18 150.2 16.7 156 205-395 9-199 (618)
85 PRK07133 DNA polymerase III su 99.5 9.6E-14 2.1E-18 151.1 17.0 155 205-394 11-192 (725)
86 PRK14957 DNA polymerase III su 99.5 1.2E-13 2.5E-18 147.5 17.2 155 205-394 9-193 (546)
87 PRK14969 DNA polymerase III su 99.5 7.6E-14 1.7E-18 149.5 15.3 154 206-394 10-193 (527)
88 PRK14952 DNA polymerase III su 99.5 1.4E-13 3.1E-18 148.1 17.2 156 205-395 6-193 (584)
89 PRK07764 DNA polymerase III su 99.5 1.3E-13 2.9E-18 153.6 17.1 156 205-395 8-195 (824)
90 PRK10787 DNA-binding ATP-depen 99.5 1.3E-13 2.9E-18 153.5 16.7 160 211-393 320-507 (784)
91 PRK14970 DNA polymerase III su 99.5 3E-13 6.5E-18 139.3 18.1 155 205-394 10-182 (367)
92 TIGR02640 gas_vesic_GvpN gas v 99.5 3.4E-13 7.4E-18 132.6 17.4 129 246-393 21-199 (262)
93 TIGR02902 spore_lonB ATP-depen 99.5 1.3E-13 2.9E-18 148.0 15.2 159 205-395 58-279 (531)
94 COG2607 Predicted ATPase (AAA+ 99.5 4E-13 8.7E-18 126.1 16.1 173 199-395 47-242 (287)
95 PRK05342 clpX ATP-dependent pr 99.5 1.9E-13 4.1E-18 141.8 15.3 178 210-391 68-324 (412)
96 PRK14965 DNA polymerase III su 99.5 1.7E-13 3.8E-18 148.4 15.5 155 206-395 10-194 (576)
97 PRK14959 DNA polymerase III su 99.5 2.4E-13 5.2E-18 146.1 16.0 155 205-394 9-193 (624)
98 PRK06893 DNA replication initi 99.5 3.7E-13 8E-18 129.7 15.3 162 203-393 7-175 (229)
99 PRK06305 DNA polymerase III su 99.5 4.3E-13 9.4E-18 141.2 17.2 153 206-393 11-194 (451)
100 PRK14953 DNA polymerase III su 99.5 3.9E-13 8.6E-18 142.5 16.6 156 205-395 9-194 (486)
101 PRK12402 replication factor C 99.5 6.2E-13 1.3E-17 134.9 17.2 155 205-395 8-200 (337)
102 PRK14955 DNA polymerase III su 99.5 2.7E-13 5.8E-18 141.0 14.6 155 205-394 9-201 (397)
103 PRK08451 DNA polymerase III su 99.5 6.8E-13 1.5E-17 141.0 17.7 156 205-395 7-192 (535)
104 TIGR00382 clpX endopeptidase C 99.5 6.2E-13 1.4E-17 137.4 16.8 225 211-445 75-382 (413)
105 PRK09111 DNA polymerase III su 99.5 6.1E-13 1.3E-17 143.9 17.0 156 205-395 17-207 (598)
106 PRK11034 clpA ATP-dependent Cl 99.5 3.4E-13 7.3E-18 149.3 15.2 159 213-393 459-667 (758)
107 TIGR03420 DnaA_homol_Hda DnaA 99.5 5.4E-13 1.2E-17 127.7 14.6 158 204-393 7-173 (226)
108 PRK06647 DNA polymerase III su 99.5 6.5E-13 1.4E-17 143.0 16.8 154 205-393 9-192 (563)
109 PRK14954 DNA polymerase III su 99.5 8.8E-13 1.9E-17 142.9 17.3 153 206-393 10-200 (620)
110 PTZ00112 origin recognition co 99.5 1.3E-12 2.7E-17 142.2 18.1 193 212-442 755-988 (1164)
111 CHL00095 clpC Clp protease ATP 99.5 1.6E-13 3.5E-18 154.7 11.6 155 208-392 175-354 (821)
112 KOG0736 Peroxisome assembly fa 99.5 7.4E-13 1.6E-17 141.1 15.6 171 245-427 430-609 (953)
113 PRK00411 cdc6 cell division co 99.5 2.8E-12 6.2E-17 133.1 19.6 158 210-393 28-221 (394)
114 PRK14948 DNA polymerase III su 99.5 1.7E-12 3.8E-17 141.2 17.8 154 205-393 9-194 (620)
115 PRK00440 rfc replication facto 99.5 3.9E-12 8.5E-17 128.0 18.9 159 199-395 6-177 (319)
116 PRK14950 DNA polymerase III su 99.4 1.9E-12 4.1E-17 140.9 17.1 155 205-394 9-194 (585)
117 PRK14971 DNA polymerase III su 99.4 2.6E-12 5.5E-17 139.9 17.7 156 205-395 10-196 (614)
118 PRK13341 recombination factor 99.4 1.7E-12 3.6E-17 143.2 16.4 153 205-393 21-182 (725)
119 COG1474 CDC6 Cdc6-related prot 99.4 4E-12 8.6E-17 130.2 17.9 214 213-463 18-265 (366)
120 TIGR00362 DnaA chromosomal rep 99.4 2.1E-12 4.5E-17 134.8 16.2 164 205-395 103-284 (405)
121 PRK08727 hypothetical protein; 99.4 4E-12 8.6E-17 122.8 16.5 158 203-393 10-176 (233)
122 PRK08903 DnaA regulatory inact 99.4 4.3E-12 9.3E-17 121.9 16.3 155 203-393 9-171 (227)
123 KOG2028 ATPase related to the 99.4 1.1E-12 2.3E-17 129.6 12.1 151 206-392 132-294 (554)
124 TIGR02639 ClpA ATP-dependent C 99.4 2.6E-12 5.7E-17 143.3 16.5 198 213-444 455-708 (731)
125 PRK00149 dnaA chromosomal repl 99.4 3.2E-12 7E-17 135.1 14.3 166 204-395 114-296 (450)
126 PRK05201 hslU ATP-dependent pr 99.4 7.3E-12 1.6E-16 128.3 15.0 71 213-283 16-87 (443)
127 PRK08084 DNA replication initi 99.4 9.5E-12 2.1E-16 120.4 14.8 159 204-392 14-180 (235)
128 PRK07471 DNA polymerase III su 99.4 3.8E-11 8.3E-16 123.1 18.8 153 205-392 12-213 (365)
129 TIGR02903 spore_lon_C ATP-depe 99.4 1.7E-11 3.8E-16 133.7 17.2 157 206-394 148-368 (615)
130 PRK13407 bchI magnesium chelat 99.3 1.4E-11 3E-16 124.6 14.8 156 207-393 3-217 (334)
131 cd00009 AAA The AAA+ (ATPases 99.3 1.3E-11 2.7E-16 108.1 12.7 116 245-378 18-151 (151)
132 TIGR00390 hslU ATP-dependent p 99.3 8E-12 1.7E-16 127.9 13.0 70 213-282 13-83 (441)
133 TIGR01650 PD_CobS cobaltochela 99.3 2.9E-12 6.2E-17 128.0 9.0 132 246-392 64-233 (327)
134 COG2812 DnaX DNA polymerase II 99.3 1.1E-11 2.5E-16 130.4 13.9 155 206-395 10-194 (515)
135 PRK14086 dnaA chromosomal repl 99.3 2.7E-11 5.8E-16 129.9 16.8 130 247-395 315-462 (617)
136 PRK05564 DNA polymerase III su 99.3 9.6E-11 2.1E-15 118.2 19.7 148 210-392 2-165 (313)
137 PRK10865 protein disaggregatio 99.3 4E-11 8.6E-16 135.5 18.3 200 211-443 567-824 (857)
138 PRK05642 DNA replication initi 99.3 6.4E-11 1.4E-15 114.5 17.2 161 203-392 10-179 (234)
139 PRK14088 dnaA chromosomal repl 99.3 3.3E-11 7.2E-16 126.8 16.3 164 205-395 98-279 (440)
140 PHA02244 ATPase-like protein 99.3 1.7E-11 3.7E-16 123.8 13.2 141 216-384 100-266 (383)
141 PRK09112 DNA polymerase III su 99.3 9.7E-11 2.1E-15 119.5 18.5 151 206-391 17-212 (351)
142 PRK12422 chromosomal replicati 99.3 3.4E-11 7.4E-16 126.6 14.8 129 247-395 142-287 (445)
143 PF07728 AAA_5: AAA domain (dy 99.3 2.8E-12 6.1E-17 113.5 5.3 105 248-370 1-139 (139)
144 COG0714 MoxR-like ATPases [Gen 99.3 3E-11 6.5E-16 122.7 13.1 130 246-393 43-204 (329)
145 COG0542 clpA ATP-binding subun 99.3 5E-11 1.1E-15 130.1 15.4 201 212-444 491-751 (786)
146 TIGR03346 chaperone_ClpB ATP-d 99.3 8E-11 1.7E-15 133.4 17.2 200 212-444 565-822 (852)
147 COG0464 SpoVK ATPases of the A 99.3 6E-11 1.3E-15 127.0 14.7 154 232-394 4-165 (494)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 6E-11 1.3E-15 133.8 15.2 155 212-394 566-782 (852)
149 KOG1969 DNA replication checkp 99.3 1.7E-10 3.7E-15 122.8 17.4 169 199-389 260-478 (877)
150 CHL00081 chlI Mg-protoporyphyr 99.3 4E-11 8.6E-16 121.6 12.1 155 208-393 13-233 (350)
151 PRK14087 dnaA chromosomal repl 99.2 1.2E-10 2.7E-15 122.7 15.6 161 208-395 111-291 (450)
152 PRK06620 hypothetical protein; 99.2 1.8E-10 3.8E-15 109.9 15.2 148 205-393 9-161 (214)
153 CHL00095 clpC Clp protease ATP 99.2 1.1E-10 2.4E-15 131.9 15.5 199 212-443 509-777 (821)
154 PF00308 Bac_DnaA: Bacterial d 99.2 1.2E-10 2.6E-15 111.4 13.1 131 247-395 35-182 (219)
155 TIGR00678 holB DNA polymerase 99.2 1.1E-10 2.4E-15 108.8 12.0 124 245-391 13-167 (188)
156 COG0542 clpA ATP-binding subun 99.2 1E-10 2.2E-15 127.7 11.9 204 209-446 167-396 (786)
157 PRK09087 hypothetical protein; 99.2 6.8E-10 1.5E-14 106.7 15.4 120 247-395 45-169 (226)
158 TIGR02030 BchI-ChlI magnesium 99.2 1.6E-10 3.6E-15 117.0 11.2 153 210-393 2-220 (337)
159 PRK07399 DNA polymerase III su 99.2 9.9E-10 2.1E-14 110.6 16.3 147 210-392 2-195 (314)
160 PRK08058 DNA polymerase III su 99.1 3.7E-10 8E-15 114.7 13.1 146 210-390 3-180 (329)
161 PRK05707 DNA polymerase III su 99.1 2.3E-09 4.9E-14 108.6 17.4 124 245-391 21-177 (328)
162 PF07724 AAA_2: AAA domain (Cd 99.1 8.5E-11 1.8E-15 108.1 6.4 109 245-358 2-131 (171)
163 PRK11331 5-methylcytosine-spec 99.1 8.4E-10 1.8E-14 114.4 13.9 133 211-378 174-357 (459)
164 PRK07952 DNA replication prote 99.1 5.3E-10 1.2E-14 108.4 11.2 129 205-357 65-205 (244)
165 PF01078 Mg_chelatase: Magnesi 99.1 3.8E-10 8.3E-15 105.6 9.1 140 210-382 1-205 (206)
166 PRK13531 regulatory ATPase Rav 99.1 9E-10 2E-14 115.1 12.6 128 246-391 39-193 (498)
167 smart00763 AAA_PrkA PrkA AAA d 99.1 2.4E-09 5.2E-14 108.3 15.2 64 208-279 46-118 (361)
168 COG0470 HolB ATPase involved i 99.1 1.5E-09 3.3E-14 109.3 13.5 143 213-389 2-178 (325)
169 PRK08116 hypothetical protein; 99.1 1.1E-09 2.4E-14 107.9 12.0 117 246-381 114-251 (268)
170 PF07726 AAA_3: ATPase family 99.1 1.1E-10 2.3E-15 100.9 3.8 106 248-371 1-130 (131)
171 TIGR00602 rad24 checkpoint pro 99.1 2E-09 4.4E-14 116.9 14.5 205 198-440 72-328 (637)
172 COG1219 ClpX ATP-dependent pro 99.1 5.1E-09 1.1E-13 102.4 15.6 122 211-340 59-203 (408)
173 TIGR02442 Cob-chelat-sub cobal 99.0 1.7E-09 3.7E-14 118.8 13.4 153 210-393 2-215 (633)
174 PF13177 DNA_pol3_delta2: DNA 99.0 4.3E-09 9.4E-14 96.0 13.8 113 244-379 17-161 (162)
175 smart00382 AAA ATPases associa 99.0 1.2E-09 2.5E-14 94.5 9.1 118 246-379 2-147 (148)
176 TIGR01817 nifA Nif-specific re 99.0 6.4E-09 1.4E-13 112.5 16.1 157 208-394 192-386 (534)
177 PRK12377 putative replication 99.0 3.2E-09 6.9E-14 103.2 11.9 95 246-357 101-206 (248)
178 PRK06964 DNA polymerase III su 99.0 2.2E-08 4.8E-13 101.6 18.4 125 244-391 19-203 (342)
179 PRK08939 primosomal protein Dn 99.0 2.2E-09 4.7E-14 107.7 10.3 96 209-309 124-229 (306)
180 KOG0745 Putative ATP-dependent 99.0 2E-08 4.3E-13 101.8 16.3 93 246-340 226-332 (564)
181 PRK04132 replication factor C 99.0 1.4E-08 3E-13 113.3 16.6 123 248-393 566-703 (846)
182 KOG0991 Replication factor C, 99.0 3.2E-09 6.9E-14 99.7 9.7 145 203-383 18-176 (333)
183 PRK11608 pspF phage shock prot 99.0 6.8E-09 1.5E-13 105.3 12.8 154 210-393 4-195 (326)
184 COG1224 TIP49 DNA helicase TIP 98.9 4.7E-08 1E-12 97.0 17.8 66 210-283 37-104 (450)
185 PF06068 TIP49: TIP49 C-termin 98.9 1.2E-08 2.7E-13 102.5 13.9 66 210-283 22-89 (398)
186 TIGR02974 phageshock_pspF psp 98.9 5E-09 1.1E-13 106.3 11.3 150 214-393 1-188 (329)
187 PF00158 Sigma54_activat: Sigm 98.9 5.9E-09 1.3E-13 95.6 10.6 86 214-310 1-106 (168)
188 PRK11388 DNA-binding transcrip 98.9 1.5E-08 3.3E-13 111.9 15.7 91 209-310 322-429 (638)
189 smart00350 MCM minichromosome 98.9 4.3E-09 9.3E-14 113.0 10.3 128 248-394 238-402 (509)
190 PRK08181 transposase; Validate 98.9 4.7E-09 1E-13 103.3 9.3 94 246-357 106-209 (269)
191 COG1220 HslU ATP-dependent pro 98.9 2.3E-08 5.1E-13 98.5 13.8 70 213-282 16-86 (444)
192 KOG0741 AAA+-type ATPase [Post 98.9 8.7E-09 1.9E-13 106.4 10.6 138 245-391 537-685 (744)
193 TIGR02031 BchD-ChlD magnesium 98.9 1.4E-08 2.9E-13 110.7 12.3 128 247-392 17-174 (589)
194 PRK06871 DNA polymerase III su 98.8 3.2E-08 7E-13 99.7 12.5 124 245-391 23-178 (325)
195 COG0593 DnaA ATPase involved i 98.8 6E-08 1.3E-12 99.7 13.9 164 204-395 79-260 (408)
196 PRK07993 DNA polymerase III su 98.8 6.2E-08 1.3E-12 98.4 13.9 123 245-390 23-178 (334)
197 PRK06090 DNA polymerase III su 98.8 8.8E-08 1.9E-12 96.4 14.6 124 244-390 23-178 (319)
198 PF03215 Rad17: Rad17 cell cyc 98.8 9E-08 1.9E-12 102.3 15.4 208 197-441 6-269 (519)
199 PRK06835 DNA replication prote 98.8 3.2E-08 7E-13 100.1 11.0 104 246-366 183-303 (329)
200 PRK15424 propionate catabolism 98.8 3.1E-08 6.8E-13 106.2 11.4 90 209-310 216-335 (538)
201 PRK06526 transposase; Provisio 98.8 7.5E-09 1.6E-13 101.2 5.7 64 246-309 98-171 (254)
202 PRK08769 DNA polymerase III su 98.8 9.4E-08 2E-12 96.2 13.8 123 245-390 25-183 (319)
203 TIGR02329 propionate_PrpR prop 98.8 3.8E-08 8.3E-13 105.5 11.3 158 207-394 207-403 (526)
204 COG1484 DnaC DNA replication p 98.8 4.7E-08 1E-12 95.6 10.9 91 211-309 78-179 (254)
205 PF14532 Sigma54_activ_2: Sigm 98.8 1.1E-08 2.5E-13 90.5 5.8 79 215-310 1-82 (138)
206 COG1221 PspF Transcriptional r 98.7 4E-08 8.7E-13 100.7 10.3 207 157-394 24-266 (403)
207 PRK10820 DNA-binding transcrip 98.7 1.3E-07 2.8E-12 101.9 14.6 157 207-393 199-393 (520)
208 PF01695 IstB_IS21: IstB-like 98.7 9E-09 2E-13 95.3 4.5 64 246-309 47-120 (178)
209 PRK08699 DNA polymerase III su 98.7 6.1E-08 1.3E-12 98.1 10.6 124 244-390 19-183 (325)
210 PF12775 AAA_7: P-loop contain 98.7 4.6E-08 1E-12 96.6 7.9 138 246-394 33-195 (272)
211 KOG1942 DNA helicase, TBP-inte 98.7 1.1E-06 2.4E-11 85.3 17.0 63 212-282 38-102 (456)
212 PRK15429 formate hydrogenlyase 98.7 3.9E-07 8.6E-12 101.5 15.5 89 209-309 373-482 (686)
213 TIGR03015 pepcterm_ATPase puta 98.6 5E-07 1.1E-11 88.7 14.4 129 248-395 45-208 (269)
214 TIGR00368 Mg chelatase-related 98.6 7.9E-08 1.7E-12 102.4 9.1 142 209-383 189-395 (499)
215 PRK06921 hypothetical protein; 98.6 2E-07 4.3E-12 91.8 11.3 63 246-308 117-188 (266)
216 PF12774 AAA_6: Hydrolytic ATP 98.6 3E-07 6.4E-12 88.6 12.0 175 246-445 32-225 (231)
217 PRK05022 anaerobic nitric oxid 98.6 4.3E-07 9.3E-12 97.7 13.8 154 210-393 185-376 (509)
218 PF00910 RNA_helicase: RNA hel 98.6 7.3E-08 1.6E-12 81.6 5.9 62 249-310 1-62 (107)
219 PF13173 AAA_14: AAA domain 98.6 2E-07 4.3E-12 81.5 8.7 113 247-384 3-127 (128)
220 COG1239 ChlI Mg-chelatase subu 98.6 5.8E-07 1.3E-11 91.7 12.5 155 209-394 14-234 (423)
221 PRK09183 transposase/IS protei 98.6 1.4E-07 2.9E-12 92.7 7.5 64 246-309 102-176 (259)
222 PRK05818 DNA polymerase III su 98.6 3.2E-06 6.9E-11 82.2 16.6 113 244-379 5-147 (261)
223 PRK09862 putative ATP-dependen 98.5 1.5E-07 3.3E-12 99.9 7.9 140 210-382 189-391 (506)
224 KOG1051 Chaperone HSP104 and r 98.5 2E-06 4.4E-11 95.8 15.9 122 213-356 563-710 (898)
225 KOG2227 Pre-initiation complex 98.5 2.6E-06 5.6E-11 87.7 15.3 201 210-447 148-383 (529)
226 KOG1514 Origin recognition com 98.5 3.1E-06 6.6E-11 90.8 16.5 172 247-448 423-633 (767)
227 COG0606 Predicted ATPase with 98.5 1.4E-07 2.9E-12 97.6 5.8 48 208-270 175-222 (490)
228 KOG2035 Replication factor C, 98.5 9.7E-07 2.1E-11 85.2 11.0 156 205-396 6-203 (351)
229 PF05621 TniB: Bacterial TniB 98.4 3.5E-06 7.6E-11 83.3 13.7 156 215-393 37-228 (302)
230 PF03969 AFG1_ATPase: AFG1-lik 98.4 3.7E-07 8.1E-12 93.5 7.2 99 243-360 59-172 (362)
231 KOG0990 Replication factor C, 98.4 1.2E-06 2.5E-11 86.3 10.1 156 203-394 32-205 (360)
232 PF01637 Arch_ATPase: Archaeal 98.4 2.6E-06 5.7E-11 80.9 12.2 133 246-394 20-206 (234)
233 PRK10923 glnG nitrogen regulat 98.4 1.9E-06 4E-11 91.8 11.9 153 211-393 137-327 (469)
234 PF13401 AAA_22: AAA domain; P 98.4 7.2E-07 1.6E-11 77.5 7.2 39 246-284 4-50 (131)
235 PRK05917 DNA polymerase III su 98.4 7.8E-06 1.7E-10 81.0 14.9 112 245-379 18-154 (290)
236 COG3829 RocR Transcriptional r 98.4 1.6E-06 3.4E-11 91.0 10.4 125 205-357 238-391 (560)
237 PTZ00111 DNA replication licen 98.4 7.4E-07 1.6E-11 99.3 8.4 128 247-392 493-657 (915)
238 PRK07132 DNA polymerase III su 98.4 6.1E-06 1.3E-10 82.5 13.8 122 245-390 17-160 (299)
239 TIGR01818 ntrC nitrogen regula 98.4 2.3E-06 5.1E-11 90.8 11.6 153 212-394 134-324 (463)
240 PRK07276 DNA polymerase III su 98.4 2E-05 4.4E-10 78.3 17.2 120 244-389 22-172 (290)
241 TIGR00764 lon_rel lon-related 98.3 1.2E-06 2.6E-11 95.8 8.6 51 208-273 14-64 (608)
242 PF05729 NACHT: NACHT domain 98.3 3.7E-06 8E-11 75.6 10.2 133 247-393 1-164 (166)
243 PRK11361 acetoacetate metaboli 98.3 3.9E-06 8.5E-11 88.9 11.5 88 211-310 142-250 (457)
244 COG2204 AtoC Response regulato 98.3 1E-05 2.2E-10 84.6 14.0 196 210-447 139-374 (464)
245 TIGR02915 PEP_resp_reg putativ 98.3 5E-06 1.1E-10 87.8 11.2 89 210-310 137-246 (445)
246 KOG0478 DNA replication licens 98.3 7.7E-06 1.7E-10 87.4 12.2 163 213-395 430-629 (804)
247 PHA02624 large T antigen; Prov 98.2 5.2E-06 1.1E-10 88.8 9.5 125 242-378 427-561 (647)
248 PRK13406 bchD magnesium chelat 98.2 1.2E-05 2.7E-10 87.2 12.3 120 247-384 26-174 (584)
249 PRK15115 response regulator Gl 98.2 8.4E-06 1.8E-10 86.1 10.6 86 213-310 135-241 (444)
250 KOG2170 ATPase of the AAA+ sup 98.2 6.3E-06 1.4E-10 80.6 8.7 89 213-309 83-190 (344)
251 PLN03210 Resistant to P. syrin 98.1 4.7E-05 1E-09 89.7 16.7 156 200-393 172-365 (1153)
252 KOG1968 Replication factor C, 98.1 1.3E-05 2.8E-10 90.0 11.2 173 199-394 309-504 (871)
253 KOG1970 Checkpoint RAD17-RFC c 98.1 5.7E-05 1.2E-09 79.3 15.0 75 196-278 68-142 (634)
254 cd01120 RecA-like_NTPases RecA 98.1 1.6E-05 3.6E-10 70.9 9.3 31 249-279 2-35 (165)
255 PHA02774 E1; Provisional 98.1 2.3E-05 4.9E-10 83.7 11.5 58 242-306 430-488 (613)
256 PHA00729 NTP-binding motif con 98.1 5.1E-06 1.1E-10 79.3 5.9 63 247-309 18-94 (226)
257 PRK10365 transcriptional regul 98.1 7.1E-05 1.5E-09 78.9 14.5 86 213-310 140-246 (441)
258 PF00931 NB-ARC: NB-ARC domain 98.0 5.9E-05 1.3E-09 74.6 11.3 125 245-395 18-173 (287)
259 COG3604 FhlA Transcriptional r 98.0 2.8E-05 6.2E-10 80.8 9.1 91 208-309 219-329 (550)
260 PF00493 MCM: MCM2/3/5 family 97.9 6.1E-06 1.3E-10 83.9 3.2 164 213-395 25-224 (331)
261 PF13207 AAA_17: AAA domain; P 97.9 7.4E-06 1.6E-10 70.2 3.2 31 249-279 2-32 (121)
262 TIGR01618 phage_P_loop phage n 97.9 1.9E-05 4.1E-10 75.4 5.6 23 246-268 12-34 (220)
263 PF05707 Zot: Zonular occluden 97.9 2.9E-05 6.3E-10 72.8 6.6 115 249-379 3-146 (193)
264 COG1485 Predicted ATPase [Gene 97.8 2.2E-05 4.8E-10 78.6 5.6 98 244-360 63-175 (367)
265 KOG2680 DNA helicase TIP49, TB 97.8 0.00023 4.9E-09 69.7 12.0 68 208-283 36-105 (454)
266 PF06309 Torsin: Torsin; Inte 97.8 2.6E-05 5.6E-10 67.5 5.0 50 213-270 26-77 (127)
267 TIGR02237 recomb_radB DNA repa 97.8 7.4E-05 1.6E-09 70.6 8.7 40 242-281 8-50 (209)
268 PF08740 BCS1_N: BCS1 N termin 97.8 0.0013 2.8E-08 61.2 16.6 132 59-214 26-187 (187)
269 PRK00131 aroK shikimate kinase 97.8 1.7E-05 3.7E-10 72.2 3.9 35 244-278 2-36 (175)
270 PF10443 RNA12: RNA12 protein; 97.8 0.00033 7.1E-09 72.4 13.5 80 358-439 197-298 (431)
271 COG5271 MDN1 AAA ATPase contai 97.8 0.00014 3.1E-09 83.9 11.4 127 246-395 1543-1706(4600)
272 PRK15455 PrkA family serine pr 97.8 2.7E-05 5.9E-10 83.1 5.3 67 206-279 70-137 (644)
273 KOG1051 Chaperone HSP104 and r 97.8 0.00018 3.8E-09 80.7 11.8 150 211-390 185-361 (898)
274 PRK07261 topology modulation p 97.8 4.3E-05 9.3E-10 70.3 5.9 100 249-393 3-102 (171)
275 KOG0480 DNA replication licens 97.7 0.00016 3.4E-09 77.1 9.7 164 211-395 344-545 (764)
276 PRK08118 topology modulation p 97.7 6.4E-05 1.4E-09 68.8 5.9 32 248-279 3-34 (167)
277 COG5245 DYN1 Dynein, heavy cha 97.7 0.00014 3.1E-09 83.3 9.4 140 244-394 1492-1660(3164)
278 PF14516 AAA_35: AAA-like doma 97.7 0.0032 6.9E-08 64.1 18.5 133 246-392 31-214 (331)
279 COG1373 Predicted ATPase (AAA+ 97.7 0.0004 8.7E-09 72.5 11.9 132 240-395 32-183 (398)
280 COG1618 Predicted nucleotide k 97.6 0.00024 5.3E-09 63.7 8.4 25 246-270 5-29 (179)
281 COG3283 TyrR Transcriptional r 97.6 0.00036 7.9E-09 69.9 10.1 132 199-357 191-344 (511)
282 COG1241 MCM2 Predicted ATPase 97.6 0.00011 2.4E-09 80.3 7.2 129 248-394 321-485 (682)
283 PRK05800 cobU adenosylcobinami 97.6 0.00017 3.7E-09 66.3 7.3 64 248-311 3-90 (170)
284 cd01124 KaiC KaiC is a circadi 97.6 0.00041 8.9E-09 64.0 9.7 30 249-278 2-34 (187)
285 PRK13947 shikimate kinase; Pro 97.6 6.1E-05 1.3E-09 68.7 3.7 32 248-279 3-34 (171)
286 PF13604 AAA_30: AAA domain; P 97.6 0.00042 9.2E-09 65.1 9.5 90 247-356 19-132 (196)
287 cd00464 SK Shikimate kinase (S 97.5 6.8E-05 1.5E-09 66.9 3.7 31 248-278 1-31 (154)
288 PF03266 NTPase_1: NTPase; In 97.5 0.00019 4E-09 65.9 6.5 23 248-270 1-23 (168)
289 PRK12723 flagellar biosynthesi 97.5 0.001 2.2E-08 68.9 12.6 65 245-309 173-266 (388)
290 PRK03839 putative kinase; Prov 97.5 6.7E-05 1.4E-09 69.3 3.5 30 249-278 3-32 (180)
291 TIGR02688 conserved hypothetic 97.5 0.00039 8.5E-09 72.0 9.3 63 246-309 209-272 (449)
292 PRK00625 shikimate kinase; Pro 97.5 7.1E-05 1.5E-09 69.0 3.5 31 248-278 2-32 (173)
293 COG4619 ABC-type uncharacteriz 97.5 0.00022 4.7E-09 64.6 6.2 25 246-270 29-53 (223)
294 cd01394 radB RadB. The archaea 97.5 0.00051 1.1E-08 65.4 9.2 38 242-279 15-55 (218)
295 PRK09361 radB DNA repair and r 97.5 0.00031 6.7E-09 67.2 7.8 39 242-280 19-60 (225)
296 KOG2228 Origin recognition com 97.5 0.0015 3.2E-08 65.3 12.4 157 213-396 25-223 (408)
297 PRK14722 flhF flagellar biosyn 97.5 0.00068 1.5E-08 69.7 10.5 103 246-364 137-266 (374)
298 PF13191 AAA_16: AAA ATPase do 97.5 5.6E-05 1.2E-09 69.4 2.4 59 214-282 2-63 (185)
299 PF13671 AAA_33: AAA domain; P 97.5 4.9E-05 1.1E-09 66.9 1.9 27 249-275 2-28 (143)
300 TIGR02012 tigrfam_recA protein 97.5 0.0004 8.6E-09 70.1 8.5 70 242-311 51-147 (321)
301 COG0703 AroK Shikimate kinase 97.5 7.6E-05 1.6E-09 68.1 3.0 32 247-278 3-34 (172)
302 PRK13949 shikimate kinase; Pro 97.5 9E-05 1.9E-09 68.0 3.3 31 248-278 3-33 (169)
303 cd00544 CobU Adenosylcobinamid 97.5 0.00068 1.5E-08 62.2 9.1 63 249-311 2-87 (169)
304 cd03283 ABC_MutS-like MutS-lik 97.4 0.00046 1E-08 65.1 8.2 64 246-309 25-117 (199)
305 PRK11823 DNA repair protein Ra 97.4 0.00042 9.2E-09 73.3 8.6 70 242-311 76-170 (446)
306 PRK09376 rho transcription ter 97.4 0.00079 1.7E-08 69.2 10.1 23 249-271 172-194 (416)
307 PF05272 VirE: Virulence-assoc 97.4 0.00066 1.4E-08 63.9 8.9 113 242-378 48-169 (198)
308 PRK06067 flagellar accessory p 97.4 0.00059 1.3E-08 65.8 8.8 37 242-278 21-60 (234)
309 PRK13948 shikimate kinase; Pro 97.4 0.00013 2.8E-09 67.8 4.0 35 244-278 8-42 (182)
310 PRK05973 replicative DNA helic 97.4 0.0012 2.6E-08 63.8 10.4 36 242-277 60-98 (237)
311 cd00983 recA RecA is a bacter 97.4 0.00058 1.3E-08 68.9 8.4 70 242-311 51-147 (325)
312 PRK13765 ATP-dependent proteas 97.4 0.00024 5.3E-09 77.9 6.1 53 205-272 24-76 (637)
313 KOG3347 Predicted nucleotide k 97.4 0.00014 3E-09 64.3 3.2 46 246-293 7-52 (176)
314 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00014 3.1E-09 67.0 3.5 28 249-276 2-29 (183)
315 PRK04841 transcriptional regul 97.4 0.0046 1E-07 71.1 16.6 172 205-419 7-222 (903)
316 COG4650 RtcR Sigma54-dependent 97.3 0.00083 1.8E-08 65.7 8.6 66 245-310 207-295 (531)
317 PRK14532 adenylate kinase; Pro 97.3 0.00016 3.5E-09 67.2 3.4 30 248-277 2-31 (188)
318 cd01393 recA_like RecA is a b 97.3 0.00064 1.4E-08 64.9 7.7 29 242-270 15-43 (226)
319 PRK14737 gmk guanylate kinase; 97.3 0.0006 1.3E-08 63.6 7.2 26 245-270 3-28 (186)
320 PRK08533 flagellar accessory p 97.3 0.0011 2.4E-08 64.0 9.2 27 242-268 20-46 (230)
321 PRK08154 anaerobic benzoate ca 97.3 0.00039 8.4E-09 70.1 6.3 58 216-278 108-165 (309)
322 PRK06217 hypothetical protein; 97.3 0.00018 4E-09 66.7 3.6 31 248-278 3-33 (183)
323 cd02021 GntK Gluconate kinase 97.3 0.00017 3.8E-09 64.3 3.3 28 249-276 2-29 (150)
324 TIGR01313 therm_gnt_kin carboh 97.3 0.00019 4E-09 65.1 3.5 27 249-275 1-27 (163)
325 PRK14531 adenylate kinase; Pro 97.3 0.0002 4.4E-09 66.4 3.8 31 247-277 3-33 (183)
326 PF00519 PPV_E1_C: Papillomavi 97.3 0.00052 1.1E-08 69.9 6.9 114 242-379 258-383 (432)
327 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00089 1.9E-08 63.8 8.2 103 247-363 30-160 (213)
328 cd01121 Sms Sms (bacterial rad 97.3 0.00077 1.7E-08 69.6 8.2 70 242-311 78-172 (372)
329 cd02020 CMPK Cytidine monophos 97.3 0.0002 4.4E-09 63.2 3.4 30 249-278 2-31 (147)
330 TIGR03499 FlhF flagellar biosy 97.3 0.0011 2.4E-08 65.9 8.9 36 246-281 194-234 (282)
331 PRK13946 shikimate kinase; Pro 97.3 0.0002 4.4E-09 66.5 3.3 34 246-279 10-43 (184)
332 PRK12608 transcription termina 97.2 0.0017 3.8E-08 66.5 10.0 24 248-271 135-158 (380)
333 cd01428 ADK Adenylate kinase ( 97.2 0.00023 5E-09 66.1 3.5 29 249-277 2-30 (194)
334 PRK06581 DNA polymerase III su 97.2 0.0045 9.7E-08 59.6 12.1 127 246-395 15-164 (263)
335 PRK05057 aroK shikimate kinase 97.2 0.00026 5.6E-09 65.1 3.7 34 246-279 4-37 (172)
336 PRK00409 recombination and DNA 97.2 0.0011 2.4E-08 74.8 9.3 96 247-359 328-452 (782)
337 PRK03731 aroL shikimate kinase 97.2 0.00032 6.9E-09 64.1 3.8 32 247-278 3-34 (171)
338 PTZ00202 tuzin; Provisional 97.2 0.0094 2E-07 62.1 14.7 63 208-280 258-320 (550)
339 PRK00771 signal recognition pa 97.2 0.0041 9E-08 65.5 12.5 61 220-281 70-133 (437)
340 PF00437 T2SE: Type II/IV secr 97.2 0.00075 1.6E-08 66.5 6.5 90 207-307 99-207 (270)
341 COG1116 TauB ABC-type nitrate/ 97.2 0.0011 2.3E-08 63.9 7.1 23 248-270 31-53 (248)
342 PF06745 KaiC: KaiC; InterPro 97.2 0.0017 3.6E-08 62.2 8.7 37 242-278 15-55 (226)
343 cd03243 ABC_MutS_homologs The 97.2 0.0013 2.8E-08 62.0 7.7 64 247-310 30-121 (202)
344 TIGR00767 rho transcription te 97.1 0.0015 3.3E-08 67.4 8.6 25 247-271 169-193 (415)
345 TIGR01069 mutS2 MutS2 family p 97.1 0.0013 2.8E-08 74.1 8.8 23 247-269 323-345 (771)
346 PRK06762 hypothetical protein; 97.1 0.00033 7.1E-09 63.7 3.3 33 246-278 2-34 (166)
347 PRK14530 adenylate kinase; Pro 97.1 0.00036 7.9E-09 66.4 3.8 30 248-277 5-34 (215)
348 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00092 2E-08 60.2 6.2 27 245-271 24-50 (157)
349 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0028 6.2E-08 55.7 8.8 29 245-273 21-49 (133)
350 cd00227 CPT Chloramphenicol (C 97.1 0.00034 7.3E-09 64.4 3.0 32 247-278 3-34 (175)
351 KOG2543 Origin recognition com 97.1 0.003 6.4E-08 64.1 9.8 132 244-393 28-194 (438)
352 KOG2383 Predicted ATPase [Gene 97.1 0.0013 2.9E-08 66.9 7.3 27 244-270 112-138 (467)
353 COG1102 Cmk Cytidylate kinase 97.1 0.00042 9.1E-09 62.2 3.3 28 249-276 3-30 (179)
354 PRK08233 hypothetical protein; 97.1 0.0018 4E-08 59.3 7.8 31 248-278 5-36 (182)
355 PRK04296 thymidine kinase; Pro 97.1 0.0031 6.8E-08 58.9 9.3 30 248-277 4-36 (190)
356 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00048 1E-08 63.6 3.7 29 248-276 5-33 (188)
357 COG1936 Predicted nucleotide k 97.1 0.00036 7.8E-09 63.4 2.7 29 249-278 3-31 (180)
358 PRK06547 hypothetical protein; 97.1 0.00056 1.2E-08 63.0 4.0 35 244-278 13-47 (172)
359 PRK05703 flhF flagellar biosyn 97.1 0.0078 1.7E-07 63.4 13.0 62 246-307 221-309 (424)
360 PF13086 AAA_11: AAA domain; P 97.0 0.00047 1E-08 65.3 3.5 22 249-270 20-41 (236)
361 PRK02496 adk adenylate kinase; 97.0 0.00046 1E-08 63.9 3.3 29 249-277 4-32 (184)
362 PF07693 KAP_NTPase: KAP famil 97.0 0.0034 7.5E-08 63.2 10.0 30 244-273 18-47 (325)
363 PRK14528 adenylate kinase; Pro 97.0 0.00052 1.1E-08 63.9 3.6 30 248-277 3-32 (186)
364 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0019 4.1E-08 60.8 7.4 21 247-267 29-49 (200)
365 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0016 3.4E-08 62.6 7.0 53 242-294 15-76 (235)
366 PRK09354 recA recombinase A; P 97.0 0.0024 5.2E-08 65.1 8.5 70 242-311 56-152 (349)
367 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0017 3.7E-08 63.7 7.2 39 242-280 32-73 (259)
368 PTZ00088 adenylate kinase 1; P 97.0 0.00055 1.2E-08 66.0 3.6 30 248-277 8-37 (229)
369 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.0026 5.5E-08 61.1 8.1 63 246-308 31-121 (222)
370 cd03216 ABC_Carb_Monos_I This 97.0 0.0013 2.8E-08 59.9 5.8 27 244-270 24-50 (163)
371 PF08298 AAA_PrkA: PrkA AAA do 97.0 0.0012 2.5E-08 66.9 5.9 65 211-282 59-125 (358)
372 cd02019 NK Nucleoside/nucleoti 97.0 0.00097 2.1E-08 51.6 4.2 22 249-270 2-23 (69)
373 COG3267 ExeA Type II secretory 97.0 0.011 2.4E-07 57.1 12.1 140 246-402 50-223 (269)
374 PRK11889 flhF flagellar biosyn 97.0 0.01 2.2E-07 61.4 12.5 49 218-270 217-265 (436)
375 PF13245 AAA_19: Part of AAA d 97.0 0.001 2.3E-08 52.6 4.2 33 248-280 12-51 (76)
376 PLN02200 adenylate kinase fami 97.0 0.00071 1.5E-08 65.4 4.0 35 246-282 43-77 (234)
377 TIGR01351 adk adenylate kinase 97.0 0.0006 1.3E-08 64.7 3.4 28 249-276 2-29 (210)
378 PF04665 Pox_A32: Poxvirus A32 96.9 0.0088 1.9E-07 57.9 11.2 126 245-393 12-171 (241)
379 PRK06696 uridine kinase; Valid 96.9 0.0025 5.3E-08 61.1 7.4 41 246-286 22-65 (223)
380 PRK13695 putative NTPase; Prov 96.9 0.0063 1.4E-07 55.8 9.8 22 249-270 3-24 (174)
381 COG0563 Adk Adenylate kinase a 96.9 0.00053 1.2E-08 63.5 2.6 33 248-282 2-34 (178)
382 PRK00279 adk adenylate kinase; 96.9 0.00072 1.6E-08 64.4 3.6 29 249-277 3-31 (215)
383 TIGR02858 spore_III_AA stage I 96.9 0.0021 4.5E-08 63.5 6.9 25 247-271 112-136 (270)
384 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0024 5.2E-08 56.9 6.6 65 245-310 25-101 (144)
385 smart00534 MUTSac ATPase domai 96.9 0.0028 6E-08 58.9 7.2 62 249-310 2-91 (185)
386 PF13479 AAA_24: AAA domain 96.9 0.0014 3.1E-08 62.3 5.4 60 247-309 4-80 (213)
387 smart00072 GuKc Guanylate kina 96.9 0.0023 5E-08 59.4 6.6 24 247-270 3-26 (184)
388 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.002 4.4E-08 60.9 6.3 22 247-268 30-51 (204)
389 PRK04040 adenylate kinase; Pro 96.9 0.0008 1.7E-08 62.8 3.5 30 246-275 2-33 (188)
390 COG4178 ABC-type uncharacteriz 96.9 0.0014 3.1E-08 70.7 5.8 27 244-270 417-443 (604)
391 PF10236 DAP3: Mitochondrial r 96.9 0.026 5.5E-07 57.0 14.5 97 298-395 157-280 (309)
392 PF13238 AAA_18: AAA domain; P 96.9 0.00061 1.3E-08 58.4 2.3 22 249-270 1-22 (129)
393 PRK14527 adenylate kinase; Pro 96.8 0.00074 1.6E-08 63.0 3.0 31 246-276 6-36 (191)
394 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.003 6.5E-08 60.3 7.2 61 247-307 31-119 (216)
395 PRK04182 cytidylate kinase; Pr 96.8 0.00087 1.9E-08 61.3 3.4 28 249-276 3-30 (180)
396 TIGR00416 sms DNA repair prote 96.8 0.0039 8.5E-08 66.1 8.7 69 242-310 90-183 (454)
397 PF00406 ADK: Adenylate kinase 96.8 0.00071 1.5E-08 60.6 2.6 26 251-276 1-26 (151)
398 TIGR02782 TrbB_P P-type conjug 96.8 0.0029 6.3E-08 63.5 7.2 62 246-307 132-214 (299)
399 PRK01184 hypothetical protein; 96.8 0.00097 2.1E-08 61.7 3.4 29 248-277 3-31 (184)
400 PF00448 SRP54: SRP54-type pro 96.8 0.0023 5E-08 60.2 5.8 25 246-270 1-25 (196)
401 cd00046 DEXDc DEAD-like helica 96.8 0.0023 5E-08 54.6 5.4 24 247-270 1-24 (144)
402 PLN02199 shikimate kinase 96.8 0.0018 3.9E-08 64.3 5.0 33 246-278 102-134 (303)
403 TIGR01613 primase_Cterm phage/ 96.7 0.0053 1.1E-07 61.7 8.4 88 211-308 47-139 (304)
404 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0012 2.5E-08 60.0 3.4 29 249-277 3-31 (171)
405 PF13521 AAA_28: AAA domain; P 96.7 0.00099 2.1E-08 60.4 2.8 26 249-275 2-27 (163)
406 COG1855 ATPase (PilT family) [ 96.7 0.0015 3.2E-08 67.4 4.1 45 210-272 245-289 (604)
407 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0068 1.5E-07 59.7 8.7 85 209-307 57-159 (264)
408 PHA02530 pseT polynucleotide k 96.7 0.0013 2.8E-08 65.8 3.5 30 247-276 3-33 (300)
409 cd03247 ABCC_cytochrome_bd The 96.7 0.0054 1.2E-07 56.5 7.4 27 244-270 26-52 (178)
410 PF01745 IPT: Isopentenyl tran 96.7 0.0015 3.2E-08 61.6 3.5 149 248-410 3-161 (233)
411 PRK14526 adenylate kinase; Pro 96.7 0.0014 3E-08 62.4 3.5 28 249-276 3-30 (211)
412 PF06431 Polyoma_lg_T_C: Polyo 96.7 0.0059 1.3E-07 61.8 8.0 137 221-378 138-285 (417)
413 PRK04328 hypothetical protein; 96.7 0.011 2.3E-07 57.7 9.8 48 242-291 19-69 (249)
414 cd02027 APSK Adenosine 5'-phos 96.7 0.0018 3.9E-08 58.0 4.0 30 249-278 2-34 (149)
415 PF08433 KTI12: Chromatin asso 96.7 0.0026 5.6E-08 62.8 5.4 61 249-309 4-82 (270)
416 TIGR01448 recD_rel helicase, p 96.7 0.012 2.6E-07 66.1 11.2 89 247-356 339-454 (720)
417 PHA00350 putative assembly pro 96.7 0.0048 1E-07 63.9 7.5 117 249-372 4-158 (399)
418 cd01128 rho_factor Transcripti 96.7 0.0051 1.1E-07 60.0 7.3 27 246-272 16-42 (249)
419 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0056 1.2E-07 56.6 7.1 66 245-310 24-102 (177)
420 PF09848 DUF2075: Uncharacteri 96.6 0.0066 1.4E-07 62.3 8.4 24 247-270 2-25 (352)
421 smart00487 DEXDc DEAD-like hel 96.6 0.0055 1.2E-07 55.7 7.1 25 247-271 25-50 (201)
422 COG2874 FlaH Predicted ATPases 96.6 0.0058 1.3E-07 57.5 7.0 35 234-268 14-50 (235)
423 PF12780 AAA_8: P-loop contain 96.6 0.0069 1.5E-07 59.7 8.1 84 213-307 9-99 (268)
424 cd03228 ABCC_MRP_Like The MRP 96.6 0.0073 1.6E-07 55.2 7.7 27 244-270 26-52 (171)
425 cd03246 ABCC_Protease_Secretio 96.6 0.0081 1.8E-07 55.0 8.0 25 246-270 28-52 (173)
426 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0017 3.7E-08 63.2 3.6 31 249-279 2-35 (249)
427 PRK10078 ribose 1,5-bisphospho 96.6 0.0016 3.5E-08 60.5 3.2 30 247-276 3-32 (186)
428 COG0194 Gmk Guanylate kinase [ 96.6 0.024 5.2E-07 52.3 10.6 69 372-446 116-186 (191)
429 PRK10416 signal recognition pa 96.6 0.022 4.7E-07 57.7 11.3 34 246-279 114-150 (318)
430 PRK04301 radA DNA repair and r 96.5 0.006 1.3E-07 61.7 7.2 53 242-294 98-159 (317)
431 PRK05541 adenylylsulfate kinas 96.5 0.0023 4.9E-08 58.8 3.8 26 246-271 7-32 (176)
432 KOG0482 DNA replication licens 96.5 0.0026 5.7E-08 66.4 4.5 168 213-394 343-541 (721)
433 PLN02674 adenylate kinase 96.5 0.0021 4.6E-08 62.4 3.7 30 246-275 31-60 (244)
434 cd03227 ABC_Class2 ABC-type Cl 96.5 0.0068 1.5E-07 55.0 6.8 65 247-311 22-113 (162)
435 cd03286 ABC_MSH6_euk MutS6 hom 96.5 0.0073 1.6E-07 57.8 7.2 63 246-308 30-120 (218)
436 COG5271 MDN1 AAA ATPase contai 96.5 0.016 3.5E-07 68.1 10.8 129 248-392 890-1047(4600)
437 COG3854 SpoIIIAA ncharacterize 96.5 0.01 2.3E-07 56.4 8.0 24 247-270 138-161 (308)
438 PRK12724 flagellar biosynthesi 96.5 0.04 8.6E-07 57.5 13.0 35 246-280 223-261 (432)
439 PRK12339 2-phosphoglycerate ki 96.5 0.0024 5.1E-08 60.2 3.6 29 246-274 3-31 (197)
440 KOG0477 DNA replication licens 96.5 0.0024 5.2E-08 68.1 4.0 64 248-311 484-560 (854)
441 TIGR02655 circ_KaiC circadian 96.5 0.0078 1.7E-07 64.5 8.0 29 242-270 259-287 (484)
442 COG2274 SunT ABC-type bacterio 96.4 0.0044 9.6E-08 69.0 5.9 28 243-270 496-523 (709)
443 PRK00889 adenylylsulfate kinas 96.4 0.0034 7.4E-08 57.5 4.3 34 246-279 4-40 (175)
444 PRK14529 adenylate kinase; Pro 96.4 0.0023 4.9E-08 61.4 3.1 27 249-275 3-29 (223)
445 KOG3354 Gluconate kinase [Carb 96.4 0.0022 4.7E-08 57.2 2.7 46 244-291 10-55 (191)
446 TIGR02236 recomb_radA DNA repa 96.4 0.0061 1.3E-07 61.4 6.4 40 242-281 91-139 (310)
447 PLN02459 probable adenylate ki 96.4 0.0031 6.7E-08 61.7 4.1 29 248-276 31-59 (261)
448 cd02022 DPCK Dephospho-coenzym 96.4 0.0027 5.9E-08 58.6 3.5 29 249-278 2-30 (179)
449 TIGR02238 recomb_DMC1 meiotic 96.4 0.0084 1.8E-07 60.5 7.3 53 242-294 92-153 (313)
450 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.0039 8.6E-08 60.3 4.7 39 242-280 17-58 (237)
451 PLN03187 meiotic recombination 96.4 0.007 1.5E-07 61.8 6.6 53 242-294 122-183 (344)
452 COG0467 RAD55 RecA-superfamily 96.4 0.0041 8.9E-08 61.0 4.8 40 242-281 19-61 (260)
453 PRK14021 bifunctional shikimat 96.4 0.0031 6.8E-08 68.4 4.2 32 248-279 8-39 (542)
454 PF05970 PIF1: PIF1-like helic 96.4 0.011 2.5E-07 60.9 8.1 28 245-272 21-48 (364)
455 COG2909 MalT ATP-dependent tra 96.4 0.097 2.1E-06 58.3 15.5 159 198-393 5-208 (894)
456 PRK11174 cysteine/glutathione 96.3 0.0058 1.3E-07 67.1 6.2 28 243-270 373-400 (588)
457 PRK12727 flagellar biosynthesi 96.3 0.013 2.9E-07 62.6 8.5 64 245-308 349-439 (559)
458 PF02367 UPF0079: Uncharacteri 96.3 0.0053 1.1E-07 53.2 4.5 28 245-272 14-41 (123)
459 COG0529 CysC Adenylylsulfate k 96.3 0.0057 1.2E-07 55.9 4.8 37 246-282 23-62 (197)
460 PRK12338 hypothetical protein; 96.3 0.003 6.5E-08 63.5 3.4 29 246-274 4-32 (319)
461 TIGR02322 phosphon_PhnN phosph 96.3 0.0028 6.1E-08 58.2 2.9 25 248-272 3-27 (179)
462 PRK10867 signal recognition pa 96.3 0.2 4.3E-06 52.8 16.9 38 245-282 99-140 (433)
463 PF01583 APS_kinase: Adenylyls 96.3 0.0035 7.6E-08 56.6 3.3 36 247-282 3-41 (156)
464 PRK09519 recA DNA recombinatio 96.3 0.011 2.3E-07 66.2 7.8 70 242-311 56-152 (790)
465 PLN02165 adenylate isopentenyl 96.3 0.0035 7.5E-08 63.4 3.5 38 246-283 43-80 (334)
466 cd03230 ABC_DR_subfamily_A Thi 96.2 0.018 4E-07 52.7 8.0 25 246-270 26-50 (173)
467 PRK13894 conjugal transfer ATP 96.2 0.013 2.9E-07 59.2 7.6 62 246-307 148-229 (319)
468 PF00488 MutS_V: MutS domain V 96.2 0.016 3.5E-07 56.0 7.9 97 247-359 44-168 (235)
469 PRK14730 coaE dephospho-CoA ki 96.2 0.004 8.6E-08 58.5 3.4 31 248-278 3-33 (195)
470 PRK09825 idnK D-gluconate kina 96.2 0.0069 1.5E-07 55.9 4.9 35 247-283 4-38 (176)
471 PRK11545 gntK gluconate kinase 96.2 0.0038 8.1E-08 56.9 3.2 26 252-277 1-26 (163)
472 cd02028 UMPK_like Uridine mono 96.2 0.0049 1.1E-07 57.0 4.0 35 249-283 2-39 (179)
473 COG4133 CcmA ABC-type transpor 96.2 0.02 4.4E-07 52.9 7.8 25 246-270 28-52 (209)
474 PRK05480 uridine/cytidine kina 96.2 0.0056 1.2E-07 57.8 4.5 37 246-282 6-43 (209)
475 cd03238 ABC_UvrA The excision 96.2 0.018 4E-07 53.1 7.7 24 245-268 20-43 (176)
476 PRK10646 ADP-binding protein; 96.2 0.037 8E-07 49.8 9.3 27 246-272 28-54 (153)
477 PRK13808 adenylate kinase; Pro 96.2 0.0039 8.4E-08 63.1 3.4 29 249-277 3-31 (333)
478 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0039 8.4E-08 58.6 3.2 40 244-283 13-53 (199)
479 PRK12337 2-phosphoglycerate ki 96.2 0.011 2.3E-07 62.3 6.6 29 245-273 254-282 (475)
480 PTZ00035 Rad51 protein; Provis 96.1 0.014 3E-07 59.6 7.4 53 242-294 114-175 (337)
481 TIGR01420 pilT_fam pilus retra 96.1 0.011 2.4E-07 60.5 6.6 26 246-271 122-147 (343)
482 PRK04220 2-phosphoglycerate ki 96.1 0.0093 2E-07 59.5 5.8 29 245-273 91-119 (301)
483 PRK00300 gmk guanylate kinase; 96.1 0.0043 9.4E-08 58.3 3.2 27 245-271 4-30 (205)
484 cd01130 VirB11-like_ATPase Typ 96.1 0.0038 8.3E-08 58.0 2.8 26 246-271 25-50 (186)
485 TIGR02868 CydC thiol reductant 96.1 0.0069 1.5E-07 65.6 5.2 27 244-270 359-385 (529)
486 KOG1808 AAA ATPase containing 96.1 0.076 1.6E-06 64.0 13.9 91 208-309 412-519 (1856)
487 PRK13764 ATPase; Provisional 96.1 0.0056 1.2E-07 66.7 4.3 26 246-271 257-282 (602)
488 TIGR00064 ftsY signal recognit 96.1 0.013 2.8E-07 58.0 6.6 36 245-280 71-109 (272)
489 cd02023 UMPK Uridine monophosp 96.1 0.0068 1.5E-07 56.7 4.3 34 249-282 2-36 (198)
490 cd00984 DnaB_C DnaB helicase C 96.1 0.0069 1.5E-07 58.4 4.5 38 242-279 9-50 (242)
491 cd03115 SRP The signal recogni 96.0 0.0071 1.5E-07 55.3 4.3 34 249-282 3-39 (173)
492 PF01443 Viral_helicase1: Vira 96.0 0.0046 9.9E-08 59.1 3.1 22 249-270 1-22 (234)
493 PRK06761 hypothetical protein; 96.0 0.0056 1.2E-07 60.7 3.7 33 247-279 4-36 (282)
494 PRK13889 conjugal transfer rel 96.0 0.033 7.2E-07 64.2 10.4 90 248-357 364-473 (988)
495 PF08423 Rad51: Rad51; InterP 96.0 0.012 2.5E-07 57.8 5.8 98 251-353 43-184 (256)
496 cd02024 NRK1 Nicotinamide ribo 96.0 0.0053 1.1E-07 57.3 3.3 27 249-275 2-29 (187)
497 PRK11176 lipid transporter ATP 96.0 0.024 5.2E-07 62.1 8.9 27 244-270 367-393 (582)
498 PRK13833 conjugal transfer pro 96.0 0.0064 1.4E-07 61.5 4.1 25 246-270 144-168 (323)
499 PF13555 AAA_29: P-loop contai 96.0 0.0053 1.1E-07 46.5 2.6 23 248-270 25-47 (62)
500 PRK00081 coaE dephospho-CoA ki 96.0 0.0061 1.3E-07 57.1 3.6 30 248-278 4-33 (194)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-97 Score=745.46 Aligned_cols=434 Identities=52% Similarity=0.897 Sum_probs=406.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhCCCCCCeEEEEecCCCCCCChHHHHHHHHHhhcCCCccc
Q 011935 13 TLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTE 92 (474)
Q Consensus 13 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~ 92 (474)
++|+.+||++|++|++|+|+++++|.+++.|+.+++ ++|++++++|.++.|.|++|+.+|++|.|+|.||++++++.++
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~-~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISAL-RGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhh
Confidence 578999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ceeecccCCCCceeEeccCCCeeEEeecCceeEEEEEEecCCCCC----CCcceEEEEEecccchhhHHHhhhHHHHHHH
Q 011935 93 RLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNH----SGEKRYFELSFHKKHKQTVICYYLPHVVERA 168 (474)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~v~d~f~g~~~~w~~~~~~~~~~~----~~~~~~~~l~f~~~~~~~~l~~yl~~~~~~~ 168 (474)
|++.+...+++++++.++++++|.|+|+||+++|.+++..++.+. ..+.|+|+|+|+++||+.|+.+||+++..++
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~ 160 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKA 160 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999988777653 3688999999999999999999999999999
Q ss_pred HHHHhcccEEEEeecCCCCCCCCCCCCCCCCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCcc
Q 011935 169 KEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG 248 (474)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg 248 (474)
++|+.+++.+++|+++.... .+...+..|+++.++||++|++|+|++++|++|++|+..|++++++|+++|++|+||
T Consensus 161 k~I~~~~r~~kl~t~~~~~~---~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG 237 (457)
T KOG0743|consen 161 KEILEENRELKLYTNSGKTV---IYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG 237 (457)
T ss_pred HHHHHHHHHHHHhhcCCCcc---cccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc
Confidence 99999999999999986422 122246789999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCC--ch
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGS--NT 326 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~--~~ 326 (474)
||||||||||||+++.|||++|++++|+++++++..+.+|++++..++++|||+||||||.+..+++......... ..
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~ 317 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLS 317 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999987777665433222 46
Q ss_pred hhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHH
Q 011935 327 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE 406 (474)
Q Consensus 327 ~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~ 406 (474)
.+++++|||++||+||+||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+... +|.++++|+
T Consensus 318 ~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie 396 (457)
T KOG0743|consen 318 RVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIE 396 (457)
T ss_pred eeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999874 699999999
Q ss_pred hhhcCCCCCHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHhhhh
Q 011935 407 GLIQSTDVTPAEVAEELMKAD-DADVALEGLVNFLKRKRIQADESK 451 (474)
Q Consensus 407 ~l~~~~~~tpa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~~~ 451 (474)
+++.+..+|||+|++.||.+. |++.|++.|+++|+.++.+.....
T Consensus 397 ~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~ 442 (457)
T KOG0743|consen 397 RLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDD 442 (457)
T ss_pred HHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccch
Confidence 999999999999999999888 899999999999999887655443
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=331.05 Aligned_cols=215 Identities=24% Similarity=0.329 Sum_probs=185.7
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.-.+..+|++|.|.++++++|.+.++.++.+|+.|.++|+.||+|+|||||||||||.||+|+|++.+..|+.+..+.+.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred ------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 284 ------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 284 ------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
+..-++.+|.-+. .||||||||||++.. .|.+.+++++...++++.+||+.|||+... +++=||++||
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATN 298 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATN 298 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecC
Confidence 3455677876654 799999999999987 455555566788999999999999999765 6799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC-CCCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-~~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
+++.|||||+||||||++|+||+|+.++|.+|++.+.+.-. .+...++.++.+.. ++|.|++...|.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~--g~sGAdlkaict 366 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTE--GFSGADLKAICT 366 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcC--CCchHHHHHHHH
Confidence 99999999999999999999999999999999999876431 24445555555543 589999987764
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-37 Score=318.41 Aligned_cols=211 Identities=26% Similarity=0.375 Sum_probs=185.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|++|.|.+++|+++.+.+..+++.++.|.++|+.+|+|+|||||||||||++|+|+|++.+.+|+.+.+.++.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
++..++.+|..+. .||||||||||++...++ +.. .....+.+++||++|||+... .+++||++||+
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~--g~~---~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNR 579 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG--GSS---SGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNR 579 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC--CCc---cchHHHHHHHHHHHccccccc--CcEEEEeccCC
Confidence 5788999999886 689999999999987443 221 256789999999999998654 57999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCC-CCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~-~tpa~i~~~l~ 424 (474)
|+.||+||+||||||..|++|+|+.+.|.+|++.++..-. ....-++++|+..++ +|.||+...|.
T Consensus 580 pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 580 PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHH
Confidence 9999999999999999999999999999999999987653 222255667776554 99999988775
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-36 Score=304.55 Aligned_cols=206 Identities=25% Similarity=0.359 Sum_probs=174.7
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc----
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY---- 283 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~---- 283 (474)
..+|+++-|-++.|+++.+ +..|++.|+.|.++|...|+|+||.||||||||.||+|+|++.+.+|+....+++.
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 4579999999999999977 55699999999999999999999999999999999999999999999999888764
Q ss_pred --ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC
Q 011935 284 --SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 359 (474)
Q Consensus 284 --~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~ 359 (474)
....++.+|..+. .||||||||||++..++.... ....+.++++||..|||+..+ +++|||++||.|+.
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~-----~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD-----QHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH-----HHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 5688999998875 699999999999976443222 236789999999999999776 56999999999999
Q ss_pred CCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHH
Q 011935 360 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL 423 (474)
Q Consensus 360 Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 423 (474)
||+||.||||||++|.+|.||...|.+|++.|+.... +...-+..-+++. ..++.||+++..
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999997552 2222223334443 359999997643
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=299.64 Aligned_cols=212 Identities=21% Similarity=0.318 Sum_probs=184.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.+..+|++|.+.++++.++...+.+++++|+.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+-..++.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 455789999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
++..++++|..+. .||||||||||++.+.++... .....+.+++||.+|||+.... ++.||++||+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-----s~~s~RvvNqLLtElDGl~~R~--gV~viaATNRP 657 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-----SSVSSRVVNQLLTELDGLEERR--GVYVIAATNRP 657 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-----chhHHHHHHHHHHHhccccccc--ceEEEeecCCC
Confidence 5788999998875 699999999999998554433 3456789999999999997764 49999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC---CCCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG---KSHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~---~~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
+.+|||++||||||..+++++|+.++|..|++...+... .....+++|+....=..||.||++..+.
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999999999999999999999999987431 2334455665555445799999987554
No 6
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=309.28 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=180.3
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
.+.+|.|++|.++.|++|.+.+. |+++|+.|.++|...|+|+||+||||||||.||+|+|.+.+.||+.++.+++.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34789999999999999988555 99999999999999999999999999999999999999999999999998875
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
..+.++.+|..+. .||||||||||++...++ .............++++||.+|||+... .++|++++||+++
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPD 461 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEeccccccccccc-ccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCcc
Confidence 4688999998876 699999999999976443 1112233556778999999999999765 6699999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
-||+||+||||||++|+++.|+..+|..|++.++...... ....++..++.. ..+++|+|++.+.
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999998765432 223334444433 4699999988663
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=264.45 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=178.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..++.++.|.+-+|++|.+.++.++...+.|+++|+.||||+|||||||||||+|++|+|+.....|+.+..+.+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...-++.+|.-+ ..|+||||||||++.. .|-+...+.+...++.+-.|||.|||+... .++-+|++||+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiat--krfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnr 303 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNR 303 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCc
Confidence 345667777655 4699999999999975 555555566778889999999999999765 56899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
.+.|||||+||||+|++|+||+|+..+++-++...-..- ......+++.++.. ..+|.|+|+..|.
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCccccchhhHHHHHH
Confidence 999999999999999999999999999887777664432 22222344555444 3488888876654
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=288.84 Aligned_cols=207 Identities=21% Similarity=0.300 Sum_probs=174.0
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc----
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY---- 283 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~---- 283 (474)
..+|.+|.|.+....++.+.+.. ++.|+.|..+|+.||||+|||||||||||+||+|+|++++.+++.++..++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 34799999999999999998876 9999999999999999999999999999999999999999999999988875
Q ss_pred --ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC--CCCceEEEEecCCC
Q 011935 284 --SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS--CGDERIIVFTTNHK 357 (474)
Q Consensus 284 --~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~--~~~~~iiI~tTN~~ 357 (474)
++.+++++|.++. .|||+||||||++.+.+.... ..-.++.+.+||+.||++... .|..++||++||+|
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq-----reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ-----REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH-----HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 5789999999986 699999999999987443211 234578899999999998654 25779999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc-CCCCCcHHHHHhhhcCCCCCHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEE 422 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~~~l~~~i~~l~~~~~~tpa~i~~~ 422 (474)
+.|||||+|+||||..|.+..|+..+|.+|++...... ....-.+.+++.+.. .|-.||+...
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTP--GfVGADL~AL 403 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTP--GFVGADLMAL 403 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCC--CccchhHHHH
Confidence 99999999999999999999999999999999987632 223344455544433 4556666443
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=289.79 Aligned_cols=212 Identities=24% Similarity=0.347 Sum_probs=176.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
-+..+|+||.|.+++|.+|.+-+..+++.++.|.. |...+.|+|||||||||||.+|+|+|.++...|+.+-..++.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 35568999999999999999999999999998875 677788999999999999999999999999999999877764
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
+++++|++|.++. .|||||+||+|.+.+.+++.+++ ++...+.+++||.+|||+.......++||++||+|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS---GGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS---GGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc---cccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 7899999999986 69999999999999977766654 45678899999999999987667789999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHH-HHHHHHHhhccc-CCCCCcHHHHHhhhcCCCCCHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHG-FKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEE 422 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~-~~~l~~~~l~~~-~~~~~l~~~i~~l~~~~~~tpa~i~~~ 422 (474)
|.|||||+||||||.-++++.++..+ ...+++..-+.. -+......+|++.+. .++|.||+-..
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsL 887 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSL 887 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHH
Confidence 99999999999999999999887555 555555543321 124455566666664 46888887443
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=267.67 Aligned_cols=214 Identities=24% Similarity=0.324 Sum_probs=176.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|.++.|.+.++++|.+.++.++..|++|...|+.+|.|++|||+||||||.||+|+||.....|+.+-.+++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999999999988888777664
Q ss_pred -----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...-++++|.-+ ..|||+||||||++.. .|-+.++++....++++-.|||.+||+.+. +.+-||++||+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnr 333 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNR 333 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccc
Confidence 345567777655 4799999999999975 455555555677889999999999999876 56899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhc-CCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ-STDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~ 424 (474)
.+.|||||+||||+|++|+||.|+...++.|+..+-..- ...-...++.++. ..++|.|+|...|-
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHH
Confidence 999999999999999999999999999999887654322 1111123344444 34588888866554
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=9e-32 Score=277.31 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=174.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++++++|++++.+++.+..+.+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999998876653
Q ss_pred -----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
+...++.+|..+ .+|+||||||||.++..+ .+...+.+...+..+..|++.+|++... .+++||+|||+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r--~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~ 293 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR--FDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNR 293 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccc--ccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCC
Confidence 235577777665 479999999999997633 2222222344567889999999997654 45889999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
++.||||++||||||.+|+||+|+.++|..|++.++...... ...++..++.. ..+|++||...+.
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~--~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS--EEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC--cccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999988654211 11233444443 3699999977654
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-32 Score=252.53 Aligned_cols=185 Identities=24% Similarity=0.376 Sum_probs=164.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+++-+.|.+.++++|.+.++.+.+.|+.|..+|++-|.|+|||||||||||.||+|+|.+....|+.++.+.+.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 3456688999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...-++++|.-+ ..|||||+||||.+.+ .|...+.+++...++++-.|||.+||+... +++-+|++||+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs--~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnr 295 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--SRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNR 295 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeeccccccc--ccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccc
Confidence 235567777655 4799999999999976 444444555777889999999999999665 67999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.+-|||||+||||+|++|+||+|+.+.|.+|++.+..
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998764
No 13
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9e-32 Score=283.76 Aligned_cols=248 Identities=24% Similarity=0.330 Sum_probs=197.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
...+|.+++|.++.|+++.+.++ |++.|..|..+|...|+|+||+||||||||.||+|+|.+.+.|++.++.++..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 34689999999999999988555 99999999999999999999999999999999999999999999999998875
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
..+.+|.+|.++. .||||||||||++...++ ....++......++++||.+|||+..+ +.++++++||+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg--~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpd 299 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG--AGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPD 299 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccC--CCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcc
Confidence 5789999999986 499999999999965332 223333456668999999999998754 5699999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh-------------
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM------------- 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~------------- 424 (474)
-|||||+||||||++|.++.||...|.+|++.+...... .......+++.. ..++.|++++.+-
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~t--pGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGT--PGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhC--CCcccchHhhhHHHHHHHHHHhcCee
Confidence 999999999999999999999999999999977765421 122223333322 2588888877662
Q ss_pred -ccCCHHHHHHHHHHHHHHHHHHHhhhhccccchhhhh
Q 011935 425 -KADDADVALEGLVNFLKRKRIQADESKNNDVKGEEAN 461 (474)
Q Consensus 425 -~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 461 (474)
...+.+.|.+.++...+++..-..+++.+....|+++
T Consensus 378 i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag 415 (596)
T COG0465 378 ITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG 415 (596)
T ss_pred EeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence 2346778888887776666554444445555555553
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=261.09 Aligned_cols=209 Identities=21% Similarity=0.315 Sum_probs=171.3
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
+...|++|+|..+.|+-|.+.+..++.-|++|+.+..||+ |+|++||||||||+||+|+|.+++..|+.++.+.+.+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 4458999999999999999999999999999999998886 9999999999999999999999999999999888762
Q ss_pred ---hhHHHHHHHhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCC--ceEEEEecCC
Q 011935 285 ---NSDLRRILLST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGD--ERIIVFTTNH 356 (474)
Q Consensus 285 ---~~~l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~--~~iiI~tTN~ 356 (474)
.++|.+++.++ ..|++|||||||.+++.+++. +....+++.-+.||..|||+.....+ -++|.++||.
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s----~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS----SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc----cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 34555554443 379999999999998744433 22566788889999999998654322 2567779999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC-CCCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-~~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
|++||+||+| ||...|++|+|+.++|..|++..++... .+....+++.+..+ .||.+||...|.
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~e--GySGaDI~nvCr 426 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSE--GYSGADITNVCR 426 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhc--CCChHHHHHHHH
Confidence 9999999999 9999999999999999999999987653 23334445544443 589999977664
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=247.21 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=183.7
Q ss_pred ccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 202 SINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 202 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
.+.-.+..++.++.|-.++++.+.+.++.++..|+.|-++|+.||+|+|||||||||||..|+|+||..+..|+.+-.+.
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 34456677999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred cc------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 282 IY------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 282 ~~------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
+. ...-++++|.-+. +-||||+||||++.+ .|-.+..+++...++++-.|++.+||+... +++-|+++
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaigg--arfddg~ggdnevqrtmleli~qldgfdpr--gnikvlma 322 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMA 322 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEee
Confidence 64 2355677776654 569999999999976 455555566778899999999999999655 56889999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc-CCCCCcHHHHHhhhcCCCCCHHHHHHHHhc
Q 011935 354 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEELMK 425 (474)
Q Consensus 354 TN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~ 425 (474)
||+|+.|||||+||||+|++++|..|+.+.|..|++.+.+.- .+...-++-+++|+. +-|.|++...+..
T Consensus 323 tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--nstgaeirsvcte 393 (435)
T KOG0729|consen 323 TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NSTGAEIRSVCTE 393 (435)
T ss_pred cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CCcchHHHHHHHH
Confidence 999999999999999999999999999999999988765432 224455677788876 4677888776653
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.5e-30 Score=273.41 Aligned_cols=184 Identities=25% Similarity=0.384 Sum_probs=152.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc----------E
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD----------I 274 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~----------~ 274 (474)
..++.+|++|+|.++++++|.+.+..++.+++.|+..|+++|+|+|||||||||||++++++|++++.+ +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 345679999999999999999999999999999999999999999999999999999999999998765 2
Q ss_pred EEEeccccc------ChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc
Q 011935 275 YDLELTSIY------SNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS 342 (474)
Q Consensus 275 ~~l~~~~~~------~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~ 342 (474)
+.+..+++. .+..++.+|..+. .|+||||||+|+++..++.... .......+++||+.||++.+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s----~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS----SDVETTVVPQLLSELDGVES 330 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc----chHHHHHHHHHHHHhccccc
Confidence 333333332 2345677776543 5899999999999864322111 22345678999999999876
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 343 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 343 ~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
. ++++||+|||+++.||||++||||||.+|+|++|+.+++++|++.|+..
T Consensus 331 ~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 L--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred C--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 4 4699999999999999999999999999999999999999999999864
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=244.90 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=169.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..++++|.|.+.+++++.+.+..++..++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..|..+-...+.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 3455689999999999999999999999999999999999999999999999999999999999998887776555443
Q ss_pred ----Ch-hHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 ----SN-SDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 ----~~-~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
.. .-++..|.-+ ..|+||||||+|++.. .|..+...++...++++-.|||.+||+.+. +.+-||++||+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNR 319 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNR 319 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccc
Confidence 22 3345556544 4799999999999975 444444455678889999999999999765 67889999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc-CCCCCcHHHHHhhhcCCCCCHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEV 419 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~~~l~~~i~~l~~~~~~tpa~i 419 (474)
.+-|||||+|.||+|++|+||.|+.+.|..|++.+...- ..+...++++++-.. +|..|+.
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTd--dFNGAQc 381 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTD--DFNGAQC 381 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccc--ccCchhh
Confidence 999999999999999999999999999999999876542 124455566554332 2444444
No 18
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4.5e-30 Score=265.40 Aligned_cols=214 Identities=23% Similarity=0.316 Sum_probs=174.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..+..+|++|+|.++++++|.+.+..++.+++.|+.+|..+|+|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....++.+|..+. .|+||||||||.++..+. ......+...+..+..+++.++++... .+++||+|||+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~--~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~ 279 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRT--DSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNR 279 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccc--cCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCC
Confidence 2355677776654 689999999999976332 222222344566788899999987543 46899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
++.+|++++||||||..|+||.|+.++|.+|++.++..... .......++... ..++++++...+.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t--~g~sgadl~~l~~ 346 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELT--EGASGADLKAICT 346 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHc--CCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999865421 223344444433 3699999977654
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-29 Score=265.21 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=183.2
Q ss_pred CcccccCCCC--CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 200 WGSINLEHPS--TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 200 w~~~~~~~~~--~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.+.+.+..+. .|++|.|..++|+.+.+.+..+.+.|..|...+.+.+.|+|||||||||||.||.|+|..+++.++.+
T Consensus 653 LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv 732 (952)
T KOG0735|consen 653 LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV 732 (952)
T ss_pred hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence 4445444443 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceE
Q 011935 278 ELTSIY------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERI 349 (474)
Q Consensus 278 ~~~~~~------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~i 349 (474)
-..++. ++..+|.+|.++. +|||||+||+|.+.++++... .+...+.+++||..|||.-.- .++.
T Consensus 733 KGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-----TGVTDRVVNQlLTelDG~Egl--~GV~ 805 (952)
T KOG0735|consen 733 KGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-----TGVTDRVVNQLLTELDGAEGL--DGVY 805 (952)
T ss_pred cCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-----CCchHHHHHHHHHhhcccccc--ceEE
Confidence 877764 6889999998875 799999999999998544322 345678899999999998654 4599
Q ss_pred EEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 350 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 350 iI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
|+++|.+|+.+||||+||||+|+.|+.|.|+..+|.+|++...... ..+...+++.++.. ..+|.||++..|.
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999876644 33334455555544 3599999987665
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=264.94 Aligned_cols=215 Identities=22% Similarity=0.312 Sum_probs=173.2
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
...++.+|++|.|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999877764
Q ss_pred ------ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 284 ------SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 284 ------~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
....++.+|..+ ..|+||||||||.++..+ .....+.......++..||+.+|++... .++.||+|||
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR--~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATN 330 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKR--YDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATN 330 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccC--CCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecC
Confidence 234467777655 368999999999997633 2222222344567788899999987544 4589999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
+++.|||+++||||||.+|+||.|+.++|.+|++.++.... .....+++.++.. ..+|++++...+.
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~--l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT--LAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC--CCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999886442 1111233444433 3599999876553
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.1e-29 Score=270.66 Aligned_cols=211 Identities=24% Similarity=0.377 Sum_probs=172.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.+..+|++|+|.+++|+++.+.+. ++..++.|...|..+++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 456689999999999999987555 68999999999999999999999999999999999999999999999887653
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
+...++.+|..+. .|+||||||||.+...+... ..+.......++++||..||++... ++++||+|||++
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~--~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC--cCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 3567888888764 68999999999997633221 1111234567889999999998654 459999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
+.|||+++||||||.+|+++.|+.++|.+|++.++.... .....++..++... .++++|+...+
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~--~~~~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK--LAPDVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC--CCcchhHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987542 22223444555444 49999987655
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=2.9e-29 Score=279.09 Aligned_cols=209 Identities=23% Similarity=0.316 Sum_probs=174.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
+..+|++|+|.+++|+.|.+.+..++..++.|.++|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
++..++.+|..+. .||||||||||.+++.++... ........+++||..|||+... .+++||+|||+|+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~----~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~ 601 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF----DTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPD 601 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC----CccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChh
Confidence 4567899998764 689999999999987332111 1234567889999999998654 5699999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
.||||++||||||.+|++|+|+.++|.+||+.+..... .....++..++... .+|++++...+
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~--~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP--LAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999998876542 22222344444433 59999997754
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=2.1e-29 Score=265.05 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=164.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
+..+|++|+|.+.+|+.+.+....|. ..+...|.++|+|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34579999999999999987665553 345678999999999999999999999999999999999999987764
Q ss_pred ---ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
++..++++|..+ .+||||||||||.++...... +........+..|+..|+.. ...++||+|||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~----~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~ 371 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK----GDSGTTNRVLATFITWLSEK----KSPVFVVATANNID 371 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC----CCchHHHHHHHHHHHHHhcC----CCceEEEEecCChh
Confidence 357788888754 479999999999987532211 12344567788889888752 34689999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
.|||+++||||||..|+++.|+.++|.+|++.++...........+++.++..+ ++|++||...+.
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999976421111123455555543 599999976553
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=238.40 Aligned_cols=205 Identities=19% Similarity=0.305 Sum_probs=168.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
...+||+++|+++.|+.-. .+..++.+|+.|..+ .|+++|||||||||||++|+|+|++.+.+++.+..+.+..
T Consensus 116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 4568999999999999874 466799999888776 4789999999999999999999999999999999888762
Q ss_pred ----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
...+++++..+. .|||+||||+|++.- +|.-. ...+.....++.||..|||+.++ ++++.|++||+|+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQ--elRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~ 265 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQ--ELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPE 265 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHH--HhcccHHHHHHHHHHhccCcccC--CceEEEeecCChh
Confidence 467888888775 699999999999865 22221 11355678899999999999765 6699999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHhc
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELMK 425 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~ 425 (474)
.||||++. ||...|+|.+|+.++|..|++.|.... ..+....++.+... .++|..||.+-+++
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 99999999 999999999999999999999998765 34444445555543 35888888776553
No 25
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=8.4e-29 Score=268.02 Aligned_cols=211 Identities=26% Similarity=0.345 Sum_probs=172.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
....+|++++|.+++|+++.+. ..+++.++.|..+|..+++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3456899999999999998764 5678999999999999999999999999999999999999999999999988754
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
....++.+|..+. .||||||||||++...++ ....+.......++++||..+|++... .+++||+|||++
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~--~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~ 331 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG--AGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRV 331 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhccc--CCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCch
Confidence 3456778887765 689999999999975332 211222344567899999999998654 458999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
+.+|||++||||||.+|.++.|+.++|.+|++.++... .......+..++... .++++|+...+
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999998764 222233455555554 48999987655
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-28 Score=261.12 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=177.0
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.+..+|++++|.+..|+.+.+.+..++..++.|...|..+++|+|||||||||||++|+|+|++++.+++.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
++..++++|..+. +||||||||||.+++.++.... ....+.+++||..+||+... .+++||++||+|
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-----~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p 388 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-----GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRP 388 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-----hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCc
Confidence 4688999998886 6999999999999874432221 22268899999999998655 559999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhc-CCCCCHHHHHHHHh
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ-STDVTPAEVAEELM 424 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~ 424 (474)
+.+|||++||||||..|++|.|+.++|.++++.++...........+++.++. ...++.+||...+.
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999854211011122233333 23489999877654
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-29 Score=237.69 Aligned_cols=203 Identities=21% Similarity=0.332 Sum_probs=167.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.+...|++|+|.+..|+.+.+.+..+++.|.+|..-..|| +|+|||||||||||.||+|+|.+.+-.|+.++.+++.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 3445789999999999999999999999999999877777 5999999999999999999999999999999998886
Q ss_pred ----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
++.-++.+|.-+ ..||||||||||.+++.++... +...++.-..||..|.|+... .++++|.++||-|
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE-----seasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiP 279 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE-----SEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIP 279 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc-----hHHHHHHHHHHHHhhhccccC-CCceEEEecCCCc
Confidence 344556676555 4799999999998876333222 344677778999999998543 4679999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcH-HHHHhhhcCCC-CCHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLF-GEIEGLIQSTD-VTPAEV 419 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~-~~i~~l~~~~~-~tpa~i 419 (474)
+.||.|++| ||+..|++|+|...+|..+++..++.. .|.+. .++..|...++ +|.++|
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYSGSDI 339 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCCcCce
Confidence 999999999 999999999999999999999999876 44443 55666665443 666665
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-28 Score=234.13 Aligned_cols=208 Identities=22% Similarity=0.312 Sum_probs=170.7
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-----
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS----- 284 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~----- 284 (474)
+|+.+.|.-++..++.+.+..++.+++.+.++|+.+|.|++||||||||||.+|+++|..++.+++.+..+.+.+
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999998888752
Q ss_pred -hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCC
Q 011935 285 -NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 361 (474)
Q Consensus 285 -~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld 361 (474)
..-+++.|..+. .|||||+||||+..+.+ ....+..+...+.+|..|++.|||+... ..+-+|+|||+|+.||
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAigGRr--~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTLD 285 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhccEE--eccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCccccc
Confidence 355777887775 68999999999998644 3333334567889999999999998665 4588999999999999
Q ss_pred ccccCCCccceEEEeCCCCHHHHHHHHHHhhccc-CCCCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 362 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 362 ~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
|||+||||+|+.+++|.|+...|..+++..-..- ......++.+.++.. .+..+++...+
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~ 346 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVC 346 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhc
Confidence 9999999999999999999999988776543211 112333566666654 35556654444
No 29
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=6.2e-28 Score=200.95 Aligned_cols=97 Identities=46% Similarity=0.838 Sum_probs=93.5
Q ss_pred hchHHHHHHHHHHHHhhhhC-CCCCCeEEEEecCCCCCCChHHHHHHHHHhhcCCCcccceeecccCCCCceeEeccCCC
Q 011935 35 LIPQQLRSYLCTTFYHYLFN-PLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGE 113 (474)
Q Consensus 35 ~~P~~l~~~~~~~~~~~~~~-~~~~~~~~~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 113 (474)
|||++||+++.+++ ++++. +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~-~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLL-RRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHH-HHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 68999999999999 88776 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCceeEEEEEEec
Q 011935 114 EVTDSFQNVQLQWKFVCKE 132 (474)
Q Consensus 114 ~v~d~f~g~~~~w~~~~~~ 132 (474)
+|+|+|+|+++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998764
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.3e-27 Score=243.72 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=169.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
..+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+....+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999887665431
Q ss_pred ------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 285 ------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 285 ------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...++.+|..+ ..|+||||||+|.+...+ .....+.+...+..+..++..++++... .++.||+|||+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~--~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~ 270 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR--TDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNR 270 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccc--ccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCC
Confidence 23455666554 368999999999997532 2222222344567788899999886443 46899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
++.+|++++||||||..|+|+.|+.++|.+|++.+...... ......++..... .++++++...+
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~--g~sg~dl~~l~ 336 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTE--GASGADLKAIC 336 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcC--CCCHHHHHHHH
Confidence 99999999999999999999999999999999998754421 1223444444432 58888886543
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=234.39 Aligned_cols=222 Identities=21% Similarity=0.308 Sum_probs=178.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
..+|++|.|.+++++++.+.+..++++|++|...+ ..+++|+|||||||||||.+|+|+|++.+..++.+..+.+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 34799999999999999999999999999998443 357899999999999999999999999999999999998863
Q ss_pred ----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
+.-++.+|.-+. +|+||||||+|.++..+ + .++.......-+++....||+.+..+..++|.++||+|.
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-R----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-c----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 334455555554 69999999999998644 1 222344556667899999999888777789999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC-CCCCcHHHHHhhhcCCCCCHHHHHHHHhccCCHHHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLV 437 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~ 437 (474)
+||.|++| ||...++++.|+.++|.+|++-++.... +++..+.+++.+.. +||..|+-+.|.. +|+..+.
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~--GySGSDLkelC~~-----Aa~~~ir 313 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTE--GYSGSDLKELCRL-----AALRPIR 313 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcC--CCcHHHHHHHHHH-----HhHhHHH
Confidence 99999999 9999999999999999999999998753 23444455554433 6999999887763 3455555
Q ss_pred HHHHHH
Q 011935 438 NFLKRK 443 (474)
Q Consensus 438 ~~l~~~ 443 (474)
+.++..
T Consensus 314 e~~~~~ 319 (386)
T KOG0737|consen 314 ELLVSE 319 (386)
T ss_pred HHHHhc
Confidence 555553
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1e-26 Score=231.32 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=145.0
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
....+|+.+.|.-.+-....+.+...+ .+.+....|+.+|++++||||||||||++|+++|++++.+++.++.+++.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 344567777444333333333222111 23344557889999999999999999999999999999999999999886
Q ss_pred ----ChhHHHHHHHhhc-------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc--------c--c
Q 011935 284 ----SNSDLRRILLSTT-------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL--------W--S 342 (474)
Q Consensus 284 ----~~~~l~~l~~~~~-------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~--------~--~ 342 (474)
++..++++|..+. +||||||||||++++.++ .. ......+....+|++.+|+. | .
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~--~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG--TT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC--CC--CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 4688999997764 599999999999987432 11 11222345557899998763 3 1
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCC
Q 011935 343 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD 413 (474)
Q Consensus 343 ~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~ 413 (474)
.....++||+|||+|+.|||+|+||||||..+ ..|+.++|.+|++.++...+ ....++..++....
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~---l~~~dv~~Lv~~f~ 329 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG---VSREDVVKLVDTFP 329 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC---CCHHHHHHHHHcCC
Confidence 22356889999999999999999999999965 68999999999999987642 22466666666543
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=9.3e-27 Score=254.41 Aligned_cols=211 Identities=22% Similarity=0.348 Sum_probs=169.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
...+|+++.|.+..++.+.+.+. ++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34579999999999999977555 57778888999999999999999999999999999999999999999987653
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
....++.+|..+. .||||||||||.+...++ ....+.......++++||..||++... +.+++|+|||+|+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~--~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~ 301 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPD 301 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC--CCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChh
Confidence 3467788887764 689999999999975322 211222344567899999999998665 4599999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
.||||++||||||++|+++.|+.++|.+|++.++.... .....++..++.. ..+|++|+...+.
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999987542 1111223344443 3599999987663
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=9.4e-27 Score=264.95 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=137.6
Q ss_pred hhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh---------------------------
Q 011935 233 RRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN--------------------------- 285 (474)
Q Consensus 233 ~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~--------------------------- 285 (474)
..+..+.++|..+|+|+||+||||||||.||+|+|++.+++++.++++++...
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 34667788999999999999999999999999999999999999988765420
Q ss_pred ----------------------hHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc
Q 011935 286 ----------------------SDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW 341 (474)
Q Consensus 286 ----------------------~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~ 341 (474)
..++.+|..|. +||||+|||||++... .....++++|++.|||..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-----------ds~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-----------ESNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-----------ccceehHHHHHHHhcccc
Confidence 12566776664 7999999999999641 112245899999999864
Q ss_pred cC-CCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCC-CCcHHHHHhhhcC-CCCCHHH
Q 011935 342 SS-CGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS-HSLFGEIEGLIQS-TDVTPAE 418 (474)
Q Consensus 342 ~~-~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~l~~~i~~l~~~-~~~tpa~ 418 (474)
.. ...+++||+|||+|+.|||||+||||||++|+++.|+..+|++++...+...+.. .....++..++.. .++++||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 22 2356999999999999999999999999999999999999998887543222101 1111234444443 3699999
Q ss_pred HHHHH
Q 011935 419 VAEEL 423 (474)
Q Consensus 419 i~~~l 423 (474)
++..+
T Consensus 1846 LanLv 1850 (2281)
T CHL00206 1846 LVALT 1850 (2281)
T ss_pred HHHHH
Confidence 98754
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.1e-24 Score=242.42 Aligned_cols=207 Identities=25% Similarity=0.360 Sum_probs=168.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
+..+|++|+|.+++++.|.+.+..++..++.|..+|+.+++|+|||||||||||++++++|++++.+++.+++.++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
....++.+|..+. .|+||||||||.+...++ .. ........++.|++.||++... ..++||++||+++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~--~~---~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~ 325 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKRE--EV---TGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPD 325 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhccccc--CC---cchHHHHHHHHHHHHhhccccC--CCEEEEeecCChh
Confidence 2456788887754 689999999999976322 11 1223456788999999988654 4588999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEE 422 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~ 422 (474)
.+|++++|||||+..|+++.|+.++|.+|++.+...... .+.....+.... ..++++++...
T Consensus 326 ~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t--~G~~gadl~~l 388 (733)
T TIGR01243 326 ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVT--HGFVGADLAAL 388 (733)
T ss_pred hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhC--CCCCHHHHHHH
Confidence 999999999999999999999999999999987654321 122333333332 35888887654
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.1e-25 Score=224.64 Aligned_cols=209 Identities=21% Similarity=0.325 Sum_probs=152.0
Q ss_pred CCCCCCccc--ccChhHHHHHH-HHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-cEEEEeccc
Q 011935 206 EHPSTFDTL--AMDPELKQMIL-DDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF-DIYDLELTS 281 (474)
Q Consensus 206 ~~~~~f~~l--~g~~~~k~~i~-~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~-~~~~l~~~~ 281 (474)
.+.-.|+++ .|.+..-..|. .....-.-.|+.-.++|++.-+|+|||||||||||.+||.|...|+. +--.++..+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 333457775 34443333332 22222233678899999999999999999999999999999999976 344455555
Q ss_pred cc------ChhHHHHHHHhhc----------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 282 IY------SNSDLRRILLSTT----------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 282 ~~------~~~~l~~l~~~~~----------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
+. +++++|++|.++. .-.||++||||+++..++...+ +.......+++||.-|||+.+-
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g---~TGVhD~VVNQLLsKmDGVeqL-- 367 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG---STGVHDTVVNQLLSKMDGVEQL-- 367 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC---CCCccHHHHHHHHHhcccHHhh--
Confidence 53 6789999998763 1259999999999864433322 2345567889999999998765
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC-----CCCCcHHHHHhhhcCCCCCHHHHH
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-----KSHSLFGEIEGLIQSTDVTPAEVA 420 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-----~~~~l~~~i~~l~~~~~~tpa~i~ 420 (474)
++++||+.||+++.+|+||+||||+.+++++++||++.|.+|++.+-..-. .......+++++.+ ++|.||+.
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTK--NfSGAEle 445 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTK--NFSGAELE 445 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc--CCchhHHH
Confidence 679999999999999999999999999999999999999999877644211 12233344444432 56777664
Q ss_pred H
Q 011935 421 E 421 (474)
Q Consensus 421 ~ 421 (474)
.
T Consensus 446 g 446 (744)
T KOG0741|consen 446 G 446 (744)
T ss_pred H
Confidence 4
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=239.03 Aligned_cols=207 Identities=21% Similarity=0.294 Sum_probs=164.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----CcEEEEecc
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FDIYDLELT 280 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~~~~l~~~ 280 (474)
.....|++|+|.+.++..+.+.+..++.+|+.|..+++.+|||+|||||||||||++|+|+|..+. ..++.-..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 344679999999999999999999999999999999999999999999999999999999999873 233333322
Q ss_pred ccc------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEE
Q 011935 281 SIY------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVF 352 (474)
Q Consensus 281 ~~~------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~ 352 (474)
+.. .+..++.+|.++. +|+|||+||||-+.+.++.... .......+.||..|||+.+. +.++||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE-----qih~SIvSTLLaLmdGldsR--gqVvvig 411 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE-----QIHASIVSTLLALMDGLDSR--GQVVVIG 411 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH-----HhhhhHHHHHHHhccCCCCC--CceEEEc
Confidence 222 4678999998886 6999999999999875543322 23456788999999999876 5699999
Q ss_pred ecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHH-HHhhhcC-CCCCHHHHHH
Q 011935 353 TTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGE-IEGLIQS-TDVTPAEVAE 421 (474)
Q Consensus 353 tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~-i~~l~~~-~~~tpa~i~~ 421 (474)
+||+++.+||||+||||||+.++||+|+.+.|.+|+...-... .++.... ...+... .++..|++..
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw--~~~i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW--EPPISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC--CCCCCHHHHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999999999999998876554 2333322 2333322 2355566543
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-24 Score=222.03 Aligned_cols=211 Identities=20% Similarity=0.242 Sum_probs=176.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
..+..|++++|.+.+|+.+.+.+..++.+++.|..+. ++.+|+||.||||||||+|++|||.+.+..++.+..+++.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3456899999999999999999999999999988774 56679999999999999999999999999999999888862
Q ss_pred -----hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 285 -----NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 285 -----~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
+.-++.+|.-+ .+|+|+||||||.++..+.... .....+...++|..+++..+...+.++||+|||.|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e-----~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE-----HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc-----cccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 34566666544 4799999999999998552111 34456778889999999888877889999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCC-CCHHHHHHHHhc
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVAEELMK 425 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~-~tpa~i~~~l~~ 425 (474)
+.+|.|++| ||...+++|.|+.+.|..+|.+++...+ +.....+++.++.-.+ ++..+|...|..
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~-~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP-NGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 999999999 9999999999999999999999998762 3333467777776544 888888777653
No 39
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.4e-24 Score=223.20 Aligned_cols=206 Identities=23% Similarity=0.336 Sum_probs=175.8
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
++.+ +++.|...+...+.+.+..++..+..|...|.++|+|+|+|||||||||.+++|+|++.+..++.+++..+.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6666 899999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred ---ChhHHHHHHHhhc--C-CcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ---SNSDLRRILLSTT--N-RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~-~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
+++.|++.|..+. + |+||||||||.+++.+.... ...+++.++|+..+||... ..++|++++||+|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~------~~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp 330 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD------DVESRVVSQLLTLLDGLKP--DAKVIVLAATNRP 330 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc------hHHHHHHHHHHHHHhhCcC--cCcEEEEEecCCc
Confidence 5788999998875 4 99999999999987433211 1467888999999999864 3679999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhc-CCCCCHHHHHHHHh
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ-STDVTPAEVAEELM 424 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~ 424 (474)
+.|||+++| ||||..++++.|+..+|.++++.+..... +....++..++. ...++.+|++..+.
T Consensus 331 ~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 331 DSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred cccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHH
Confidence 999999999 99999999999999999999999987663 222334444433 35688899887665
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.2e-21 Score=188.04 Aligned_cols=227 Identities=16% Similarity=0.180 Sum_probs=162.0
Q ss_pred ecccchhhHHHhhhHHHHHHHHHHHhcccEEEEeecCCCCCCCCCCCCCCCCCcccccCCCCCCcccccChhHHHHHHHH
Q 011935 148 FHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDD 227 (474)
Q Consensus 148 f~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~ 227 (474)
+.++.-..|..+|++.++.....|++..+..--+..... . ..+.-..-..........|+.|+..+.+++.|...
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls-~----~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~l 370 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLS-A----LKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDL 370 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHH-H----HhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHH
Confidence 345566678888988888877776665443211111000 0 00000000111123344699999999999999764
Q ss_pred HHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-----ChhHHHHHHHhhc---CCc
Q 011935 228 LDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-----SNSDLRRILLSTT---NRS 299 (474)
Q Consensus 228 l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-----~~~~l~~l~~~~~---~~s 299 (474)
...-.. .+....+-|++|||||||||||++|+-||...|+++-.+...++. ....++++|..+. ..-
T Consensus 371 A~aTaN-----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGL 445 (630)
T KOG0742|consen 371 AIATAN-----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGL 445 (630)
T ss_pred HHHhcc-----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccce
Confidence 443322 223455678999999999999999999999999999888877775 3478899998875 356
Q ss_pred EEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCC
Q 011935 300 ILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC 379 (474)
Q Consensus 300 Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p 379 (474)
+|||||.|+++..++.... +...+..|+.||-.... .+.++++|.+||+|++||.|+-. |||..|+||+|
T Consensus 446 llFIDEADAFLceRnktym----SEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLP 515 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYM----SEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLP 515 (630)
T ss_pred EEEehhhHHHHHHhchhhh----cHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHHHHh--hhhheeecCCC
Confidence 8999999999875544333 34566778887755432 23568999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 011935 380 TVHGFKVLASNYLGI 394 (474)
Q Consensus 380 ~~~~~~~l~~~~l~~ 394 (474)
..++|..|+..||..
T Consensus 516 GeEERfkll~lYlnk 530 (630)
T KOG0742|consen 516 GEEERFKLLNLYLNK 530 (630)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999999864
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=3.5e-19 Score=167.30 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=114.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
.-.|.+|++++|++++++.+.-.+.....+. ....++|||||||+|||+||+.||++++.++...+...+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4578999999999999998766555443221 22358999999999999999999999999999998877777
Q ss_pred hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-----cCCC---------CceEE
Q 011935 285 NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-----SSCG---------DERII 350 (474)
Q Consensus 285 ~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-----~~~~---------~~~ii 350 (474)
..++..++.....+.|||||||+++. +..-..|+..|+... ..+. ...-+
T Consensus 89 ~~dl~~il~~l~~~~ILFIDEIHRln----------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 89 AGDLAAILTNLKEGDILFIDEIHRLN----------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp CHHHHHHHHT--TT-EEEECTCCC------------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHHHHHHHHhcCCCcEEEEechhhcc----------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 78899999888889999999999983 223344555554321 1111 12568
Q ss_pred EEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 351 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 351 I~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
|++|++...|.+.|+. ||....++.+++.++..+|+++.....
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l 195 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARIL 195 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCT
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999 999999999999999999998876554
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=3.5e-20 Score=161.60 Aligned_cols=123 Identities=33% Similarity=0.540 Sum_probs=101.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc------ChhHHHHHHHhhc--C-CcEEEEecccccccccccCCCC
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY------SNSDLRRILLSTT--N-RSILVIEDVDCSVEMKDRQNDG 319 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~-~sIl~iDeiD~l~~~~~~~~~~ 319 (474)
+||+||||||||++++++|+.++.+++.+++..+. ....+...|..+. . |+||+|||+|.+.... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-----~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-----Q 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-----S
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-----c
Confidence 58999999999999999999999999999998876 3466777777752 4 8999999999998743 1
Q ss_pred CCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCC
Q 011935 320 ASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 320 ~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~ 378 (474)
..........+..|++.++..... ..+++||+|||.++.++|+++| |||+..|++|.
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 112445667788999999987543 3458999999999999999998 89999999984
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=3.5e-17 Score=162.53 Aligned_cols=169 Identities=16% Similarity=0.233 Sum_probs=124.1
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCc---cceecCCCCCcHHHHHHHHHHHhC-------CcEEEEeccc
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLR-------FDIYDLELTS 281 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~r---giLL~GppGtGKT~la~alA~~l~-------~~~~~l~~~~ 281 (474)
++++|.+++|++|.+.+.. +..+..+++.|..++. ++||+||||||||++|+++|+.+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999886654 5556777888876542 489999999999999999998762 2477777665
Q ss_pred cc------ChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 282 IY------SNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 282 ~~------~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
+. +......++..+ .++||||||+|.+.... .. ..........|+..|+.. ..+++||++++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~--~~-----~~~~~e~~~~L~~~me~~----~~~~~vI~ag~ 169 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPD--NE-----RDYGSEAIEILLQVMENQ----RDDLVVIFAGY 169 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCC--Cc-----cchHHHHHHHHHHHHhcC----CCCEEEEEeCC
Confidence 43 223445566654 46899999999885311 00 123456677888888753 24467777765
Q ss_pred CC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 356 HK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 356 ~~-----~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.. ..++|+|.+ ||+.+|+|+.++.+++.+|+..++...
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 32 134699999 999999999999999999999998754
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2.2e-17 Score=162.20 Aligned_cols=169 Identities=14% Similarity=0.238 Sum_probs=122.1
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---CccceecCCCCCcHHHHHHHHHHHhC-------CcEEEEecc
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLR-------FDIYDLELT 280 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GppGtGKT~la~alA~~l~-------~~~~~l~~~ 280 (474)
+++++|.+++|+.|.+.+...... ....+.|... ..+++|+||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 678999999999998877655433 4445567653 34689999999999999999998752 356666666
Q ss_pred cccC------hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec
Q 011935 281 SIYS------NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 354 (474)
Q Consensus 281 ~~~~------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT 354 (474)
++.+ ...++.+|..+ .++||||||+|.+.. + .. .......+..|+..++.. ...+++|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~--~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--G--GE----KDFGKEAIDTLVKGMEDN----RNEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--C--Cc----cchHHHHHHHHHHHHhcc----CCCEEEEecC
Confidence 6532 34556667655 468999999999852 1 10 122345677788888753 2345666655
Q ss_pred CCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 355 NHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 355 N~~-----~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+.. ..++|+|.+ ||+.+|+||.++.+++.++++.++...
T Consensus 151 ~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred CcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 432 247899999 999999999999999999999998654
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=1.8e-17 Score=168.08 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=134.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN 285 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 285 (474)
..|.+|++++|.++.++.+...+...... ..++.++|||||||||||++|+++|++++.++...+...+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 45789999999999999988776543221 2345689999999999999999999999999887777666666
Q ss_pred hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-----cC---------CCCceEEE
Q 011935 286 SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-----SS---------CGDERIIV 351 (474)
Q Consensus 286 ~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-----~~---------~~~~~iiI 351 (474)
..+..++.....+.||||||||.+.. ..... |...++... .. .-...++|
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~-------------~~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSP-------------VVEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcch-------------HHHHH---HHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 77888888777889999999998842 11111 223332110 00 01236789
Q ss_pred EecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcH-HHHHhhhcCCCCCHHHHH
Q 011935 352 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLF-GEIEGLIQSTDVTPAEVA 420 (474)
Q Consensus 352 ~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~-~~i~~l~~~~~~tpa~i~ 420 (474)
++||++..++++|++ ||...+.+++|+.+++.++++......+ .... +.+..++....-+|..+.
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~ 220 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIAN 220 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHH
Confidence 999999999999998 9999999999999999999998876542 2222 233444444444454333
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=168.95 Aligned_cols=181 Identities=22% Similarity=0.317 Sum_probs=138.1
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCCccceecCCCCCcHHHHHHHHHHHhC---------CcEEEE
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLR---------FDIYDL 277 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGtGKT~la~alA~~l~---------~~~~~l 277 (474)
.--|+.++-+.++|+.+.......+...+.-..- -+.|.|-+||+||||||||+|++|+|+.+. ..++.+
T Consensus 138 ~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 138 DGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred hhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3457889999999999998777665433211111 146788999999999999999999999873 356778
Q ss_pred eccccc------ChhHHHHHHHhhc-----CC--cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 278 ELTSIY------SNSDLRRILLSTT-----NR--SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 278 ~~~~~~------~~~~l~~l~~~~~-----~~--sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
++..+. +..-+.++|.+.. .. ..++|||++.+...+... .+.+.+...-+.++.+|..||.+...
T Consensus 218 nshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~-~S~~EpsDaIRvVNalLTQlDrlK~~- 295 (423)
T KOG0744|consen 218 NSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSA-SSRNEPSDAIRVVNALLTQLDRLKRY- 295 (423)
T ss_pred ehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhh-hcCCCCchHHHHHHHHHHHHHHhccC-
Confidence 877775 3445566665542 22 356799999998744222 12223556678899999999998765
Q ss_pred CCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 345 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 345 ~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++++.+|+|-.+.||.|+.. |-|...++++|+...+.+|++.++.
T Consensus 296 -~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 296 -PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred -CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 568999999999999999999 9999999999999999999998864
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=8.8e-17 Score=159.64 Aligned_cols=170 Identities=17% Similarity=0.238 Sum_probs=126.8
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---CccceecCCCCCcHHHHHHHHHHHhC-------CcEEEEec
Q 011935 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLR-------FDIYDLEL 279 (474)
Q Consensus 211 f~-~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GppGtGKT~la~alA~~l~-------~~~~~l~~ 279 (474)
++ .++|.+++|++|.+.+.. +..+..+.+.|.+. ..++||+||||||||++|+++|..+. .+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 699999999999886665 66777888888764 44899999999999999999998773 25777776
Q ss_pred cccc------ChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 280 TSIY------SNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 280 ~~~~------~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
.++. +...+..+|..+ .+++|||||++.+.... . ...........|+..|+.- ..+++||++
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~--~-----~~~~~~~~~~~Ll~~le~~----~~~~~vI~a 166 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPD--N-----ERDYGQEAIEILLQVMENQ----RDDLVVILA 166 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCC--C-----ccchHHHHHHHHHHHHhcC----CCCEEEEEe
Confidence 6553 234555666654 45899999999885311 0 0123445667888888742 245667776
Q ss_pred cCCC--C---CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 354 TNHK--E---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 354 TN~~--~---~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++.. + .++|+|.+ ||+..|+||.++.+++..|+.+++...
T Consensus 167 ~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 6532 2 35899999 999999999999999999999998764
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.73 E-value=4.7e-17 Score=163.18 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=120.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHH
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLR 289 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~ 289 (474)
+|++++|++++++.+...+......+ ..+.+++||||||||||++++++|++++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999877765443221 2346799999999999999999999999988777766555556677
Q ss_pred HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--------------cCCCCceEEEEecC
Q 011935 290 RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--------------SSCGDERIIVFTTN 355 (474)
Q Consensus 290 ~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--------------~~~~~~~iiI~tTN 355 (474)
..+.....+.+|||||||.+.. .. ...|++.++... .......++|++||
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~-------------~~---~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP-------------AV---EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH-------------HH---HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 7777777889999999998843 11 122333332111 00112378889999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++..+++++++ ||...+.++.++.++..++++......
T Consensus 138 ~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 138 RAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred CccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999998876543
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.5e-16 Score=149.89 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=131.0
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN 285 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 285 (474)
-.|..|++.+|++++|+++.-.+.....+. ...-++|||||||.|||+||..||+++|.++-..+...+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 468899999999999999877777554332 334689999999999999999999999999999998888888
Q ss_pred hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc-----ccCC-C--------CceEEE
Q 011935 286 SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL-----WSSC-G--------DERIIV 351 (474)
Q Consensus 286 ~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~-----~~~~-~--------~~~iiI 351 (474)
.++..++.......|||||||+++.. ... .-|-..|+.+ -... + ...-+|
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~-------------~vE---E~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSP-------------AVE---EVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcCh-------------hHH---HHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 99999999999999999999999843 111 1122233221 0000 0 224689
Q ss_pred EecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++|.+...|...|+. ||....++.+++.++..+|+.+.-..-
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 999999999999999 999999999999999999999886544
No 50
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.70 E-value=4.3e-16 Score=148.36 Aligned_cols=174 Identities=20% Similarity=0.315 Sum_probs=142.4
Q ss_pred CCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcE
Q 011935 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDI 274 (474)
Q Consensus 198 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~ 274 (474)
+...+|....|..+++|+|.+.+|+.|.+....|+... +..++||||++|||||++++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 34667778888999999999999999999999998643 46789999999999999999999876 6788
Q ss_pred EEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec
Q 011935 275 YDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 354 (474)
Q Consensus 275 ~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT 354 (474)
+.+.-.++..-..+...+...+.+-|||+||+- ++ ........|-..|||-....+++++|.+|+
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-------------~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE-------------EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC-------------CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 888888887778888888877788999999864 22 123346778888898888888999999999
Q ss_pred CCCCCCCcccc----------CC-----------CccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 355 NHKERIDPALL----------RP-----------GRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 355 N~~~~Ld~aLl----------rp-----------GRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
|+...+++... .| .||...|.|..|+.++..+|+++++...
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 97654433211 11 2999999999999999999999999655
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=6.1e-16 Score=173.17 Aligned_cols=159 Identities=24% Similarity=0.246 Sum_probs=115.9
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--------
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-------- 284 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-------- 284 (474)
+++|++++|+.|.+.+...... +...+.++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4889999999998866643221 2223447999999999999999999999999999998765432
Q ss_pred -------hhHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-----cccC------CC
Q 011935 285 -------NSDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-----LWSS------CG 345 (474)
Q Consensus 285 -------~~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-----~~~~------~~ 345 (474)
...+.+.|..+. .+.||+|||||.+.. +.. ....+.|+..+|. +... .-
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~~----------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SFR----------GDPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--ccC----------CCHHHHHHHhcCHHhcCccccccCCceecc
Confidence 233455555543 456999999999963 110 0123455655552 1000 01
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++++|+|||.++.+|++|++ ||+ .|+|+.|+.+++.+|+++|+.
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999 996 789999999999999999873
No 52
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.6e-16 Score=162.48 Aligned_cols=206 Identities=19% Similarity=0.220 Sum_probs=143.9
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHH----
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLR---- 289 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~---- 289 (474)
=.|.+++|+.|.+.+.-....+ .-...-++|+||||+|||||++.||..++..|+.+++..+.++++++
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 3588999999999876433222 11123467999999999999999999999999999999998776664
Q ss_pred -----------HHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC-----------CC
Q 011935 290 -----------RILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC-----------GD 346 (474)
Q Consensus 290 -----------~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~-----------~~ 346 (474)
+.+..+. ..-+++|||||++.. +-.+ .--+.||..+|--.+.. =.
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~rG----------DPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SFRG----------DPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccC--CCCC----------ChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 2233332 467999999999964 1111 12355666665211100 03
Q ss_pred ceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHh-hhc--CCCCCHHHHHHHH
Q 011935 347 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEG-LIQ--STDVTPAEVAEEL 423 (474)
Q Consensus 347 ~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~-l~~--~~~~tpa~i~~~l 423 (474)
++++|+|+|..+.+|.+|+. ||. .|+++-++.++..+|+++||-.. .+++ -+. +..+++.-+ ..+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk--------~~~~~gL~~~el~i~d~ai-~~i 533 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPK--------QLKEHGLKKGELTITDEAI-KDI 533 (782)
T ss_pred heEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchH--------HHHHcCCCccceeecHHHH-HHH
Confidence 58999999999999999999 995 79999999999999999997432 1111 111 223444443 566
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHhhh
Q 011935 424 MKADDADVALEGLVNFLKRKRIQADES 450 (474)
Q Consensus 424 ~~~~~~~~al~~l~~~l~~~~~~~~~~ 450 (474)
+++...++.+|+|.+.+...-++....
T Consensus 534 I~~YTREAGVR~LeR~i~ki~RK~~~~ 560 (782)
T COG0466 534 IRYYTREAGVRNLEREIAKICRKAAKK 560 (782)
T ss_pred HHHHhHhhhhhHHHHHHHHHHHHHHHH
Confidence 777777888888887777665554443
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.3e-15 Score=160.59 Aligned_cols=154 Identities=19% Similarity=0.361 Sum_probs=116.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+++.+...+. .. ..+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4579999999999999777665443 11 24567999999999999999999998864
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.+.-.+-..++++..... ...||+|||+|.+. ....+.|+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------------~~a~~~LL 138 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------------KEAFNALL 138 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH----------------HHHHHHHH
Confidence 566776654334456666554432 34699999999883 23456778
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..++.. +..+++|++|+.+..+++++.+ |+. .++|..++.++...+++....
T Consensus 139 k~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 139 KTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred HHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHH
Confidence 887752 3457777887788899999999 884 789999999998888877664
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.67 E-value=2e-15 Score=160.83 Aligned_cols=162 Identities=21% Similarity=0.343 Sum_probs=123.7
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.-..|.+|++|+|++++++.+.+.+..+.. |. +++++|||||||||||++|+++|++++++++.++.++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 357899999999999999999888876652 22 367999999999999999999999999999999998876
Q ss_pred ChhHHHHHHHhh--------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 284 SNSDLRRILLST--------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 284 ~~~~l~~l~~~~--------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
+...+..++... ..+.||+|||+|.+... .....+..|++.++. ....+|+++|
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~------------~d~~~~~aL~~~l~~------~~~~iIli~n 138 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN------------EDRGGARAILELIKK------AKQPIILTAN 138 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc------------cchhHHHHHHHHHHc------CCCCEEEecc
Confidence 666666655433 14679999999988531 112234566666653 1234777889
Q ss_pred CCCCCCc-cccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 356 HKERIDP-ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 356 ~~~~Ld~-aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+..+++ .|.+ |+ ..|+|+.|+..++..+++..+...
T Consensus 139 ~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 139 DPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 8888887 5554 44 679999999999998888877544
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.1e-15 Score=152.93 Aligned_cols=152 Identities=23% Similarity=0.334 Sum_probs=113.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
...|.+|++++|++.+...- ..+.+.+. ...-.+++|||||||||||+|+.||+.++.+|..++...- +
T Consensus 17 rmRP~~lde~vGQ~HLlg~~-~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-g 85 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEG-KPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-G 85 (436)
T ss_pred HhCCCCHHHhcChHhhhCCC-chHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-c
Confidence 35699999999998776431 12222221 1224579999999999999999999999999999987654 5
Q ss_pred hhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEE-ecCCC
Q 011935 285 NSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVF-TTNHK 357 (474)
Q Consensus 285 ~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~-tTN~~ 357 (474)
.++++.++.++. .+.|||||||+++-. .....||-.++. +.+++|+ ||.+|
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------------~QQD~lLp~vE~------G~iilIGATTENP 143 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------------AQQDALLPHVEN------GTIILIGATTENP 143 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------------hhhhhhhhhhcC------CeEEEEeccCCCC
Confidence 688999988773 368999999998832 223456777653 4567776 44455
Q ss_pred -CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 358 -ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 358 -~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
-.+.+||++ |+ +...+...+.++.++++++-+
T Consensus 144 sF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 144 SFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred CeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 689999999 87 467889999999999998843
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.7e-15 Score=160.96 Aligned_cols=156 Identities=18% Similarity=0.300 Sum_probs=120.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+. +...+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 3578999999999999998877554 1123567899999999999999999998864
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++..+-...++++.++.... ...|+||||+|.+.. ...+.||
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------------~A~NALL 140 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------------HAFNAML 140 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------------HHHHHHH
Confidence 455565544334566777776532 346999999998832 3467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..|+.- ..+++||++||++.+|.+.+++ || .++.|..++.++....++..+...
T Consensus 141 KtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 141 KTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred HHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 877753 3468899999999999999999 98 689999999999888888876543
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=6e-16 Score=172.36 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=119.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEE
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYD 276 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~ 276 (474)
.|..++.++|.++..+.+.+.+.. ..+.+++|+||||||||++++++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 577899999999998877665531 235689999999999999999999987 778999
Q ss_pred EecccccC--------hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCC
Q 011935 277 LELTSIYS--------NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGD 346 (474)
Q Consensus 277 l~~~~~~~--------~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~ 346 (474)
++++.+.. +..++++|..+. .++||||||||.+++.....+ + .....+-|+..+.. +
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~-----~--~~~~~~~L~~~l~~------g 310 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG-----G--SMDASNLLKPALSS------G 310 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC-----c--cHHHHHHHHHHHhC------C
Confidence 99877652 357888888764 478999999999975321111 0 11112233444431 4
Q ss_pred ceEEEEecCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 347 ERIIVFTTNHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 347 ~~iiI~tTN~~-----~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.+.+|++||.. -..|+||.| ||. .|+++.|+.+++.+|++.....
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 58888888864 357999999 997 7999999999999999976654
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.5e-15 Score=155.64 Aligned_cols=156 Identities=15% Similarity=0.303 Sum_probs=116.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+.+.|...+.. | ..+..+||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 46799999999999999887665541 1 23456999999999999999999999865
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++...-.+.+.++.+..... ...|+||||+|.+. ....+.||
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls----------------~~A~NALL 142 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT----------------DQSFNALL 142 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------------HHHHHHHH
Confidence 355555443333455665544332 34699999999883 24567788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++. ....+++|++|+.++.|.+++++ |+. ++.|..++.++....++......
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHc
Confidence 88864 33568889999999999999999 984 68899999888877777765543
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.1e-15 Score=161.00 Aligned_cols=156 Identities=17% Similarity=0.291 Sum_probs=121.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
..+|.+|++|+|++.+++.|.+.+..- ..+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 357999999999999999887766521 23567999999999999999999998875
Q ss_pred -----------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhH
Q 011935 273 -----------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLT 329 (474)
Q Consensus 273 -----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 329 (474)
+++.++..+-.+-+++++++.... ...|+||||+|.+. ...
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------------~~A 140 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------------NHA 140 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC----------------HHH
Confidence 455565554334566777765532 34699999999883 234
Q ss_pred HhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 330 LSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 330 l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+.||..|+. ...++++|++||.+++|.+.+++ |+ ..+.|+.++.++..+.++..+...
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 6788888875 33568899999999999999999 98 688999999999888888766543
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=149.59 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=114.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.+...+.. ...+..+||+||||||||++|+++|+.+..
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4689999999999999987665541 123567899999999999999999998852
Q ss_pred -----------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 273 -----------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 273 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+++.++.++-.....++.++.... ...|++|||+|.+. ....+.||.
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------------~~a~naLLk 141 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------------RHSFNALLK 141 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------------HHHHHHHHH
Confidence 344454443233455666665432 34699999999873 233566777
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++.. +....+|++|+.++.+.+++.. |+ ..++|+.++.++....+...+...
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 77652 3456778888888999999987 87 578999999999988888766543
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.3e-15 Score=157.22 Aligned_cols=156 Identities=16% Similarity=0.303 Sum_probs=119.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+. ....+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 3578999999999999888877654 1123568999999999999999999999864
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.++-..-..++.++.... +..|++|||+|.+.. ...+.|+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------------~A~NALL 139 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------------HSFNALL 139 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------------HHHHHHH
Confidence 566666654445567777776542 346999999998832 3456777
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. .+.+.+|++|+.+..+++.+++ |+ ..++|..++.++....+...+...
T Consensus 140 KtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 140 KTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred HHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 777752 3457788888889999999987 88 578999999999888887776543
No 62
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-14 Score=153.59 Aligned_cols=160 Identities=22% Similarity=0.304 Sum_probs=116.2
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHH---
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLR--- 289 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~--- 289 (474)
+=.|.+++|+.|.+.+.--. -.|..-+.-++|+||||+|||+++++||..+|..|+.+++..+.+.++++
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 44688999999998776221 11222334578999999999999999999999999999998887655443
Q ss_pred ------------HHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC---------cccCC--C
Q 011935 290 ------------RILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSC--G 345 (474)
Q Consensus 290 ------------~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~--~ 345 (474)
+.+.... .+-+++|||||++.. +-.++ --+.||..+|- ...-+ =
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~qGD----------PasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GHQGD----------PASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CCCCC----------hHHHHHHhcChhhccchhhhccccccch
Confidence 3333332 467999999999952 11111 12445544442 11100 0
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..+++|+|+|..+.++++|+. ||. .|+++-+..++...|+++||-.
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 358999999999999999999 996 6899999999999999999853
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=5.9e-15 Score=165.89 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=114.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
-.|..++.++|.++....+++.+.. ..+.+++|+||||||||++++.+|+.+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 3577899999999987777665431 234689999999999999999999986 35678
Q ss_pred EEecccccC--------hhHHHHHHHhhc---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 276 DLELTSIYS--------NSDLRRILLSTT---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~~---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
.++++.+.. +..++.++.+.. .++||||||||.+.+..+..+ . ...-+-|+..+..
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-----~---~d~~n~Lkp~l~~----- 314 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-----Q---GDAANLLKPALAR----- 314 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-----c---ccHHHHhhHHhhC-----
Confidence 787776541 257888887653 578999999999975322111 0 1111223333321
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 345 GDERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 345 ~~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
+.+.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+...
T Consensus 315 -G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~ 365 (852)
T TIGR03345 315 -GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPV 365 (852)
T ss_pred -CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHh
Confidence 4678888888643 48999999 996 7999999999999997666543
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.8e-14 Score=150.63 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=112.7
Q ss_pred cCCCCCCcccccChhHHHH---HHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 205 LEHPSTFDTLAMDPELKQM---ILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~---i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
...|.+|++++|++.+... +...+. . ....+++|+||||||||++|+++|+.++.+++.++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4578999999999988665 544432 1 12358999999999999999999999999999998765
Q ss_pred ccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec-
Q 011935 282 IYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT- 354 (474)
Q Consensus 282 ~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT- 354 (474)
. +...++.++..+. .+.||||||||++.. .....|+..++. ..+++|++|
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------------~~q~~LL~~le~------~~iilI~att 128 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------------AQQDALLPHVED------GTITLIGATT 128 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------------HHHHHHHHHhhc------CcEEEEEeCC
Confidence 4 4456666665542 568999999998732 223456666653 335566554
Q ss_pred -CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 355 -NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 355 -N~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 334689999999 98 67899999999999999887653
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=4.6e-14 Score=142.25 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=114.7
Q ss_pred CCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 198 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
..|. ....|.+|++++|+++.++.+...+.. | ..+..+||+||||+|||++++++|++++.+++.+
T Consensus 9 ~~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWE--QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Ccce--eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 3564 357899999999999999988776541 1 2345677799999999999999999999999999
Q ss_pred ecccccChhHHHHHH----Hhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEE
Q 011935 278 ELTSIYSNSDLRRIL----LST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERII 350 (474)
Q Consensus 278 ~~~~~~~~~~l~~l~----~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ii 350 (474)
++.+ .....++..+ ... ..+.+|+|||+|.+.. .... ..|...++.. .....+
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~---~~L~~~le~~----~~~~~~ 134 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------ADAQ---RHLRSFMEAY----SKNCSF 134 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------HHHH---HHHHHHHHhc----CCCceE
Confidence 9887 3233333322 111 2578999999997721 1112 2333444432 234678
Q ss_pred EEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 351 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 351 I~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
|+|||.+..+++++++ ||. .+.++.|+.+++..++..++
T Consensus 135 Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 135 IITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred EEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 8899999999999999 985 78999999999887776653
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.3e-14 Score=151.97 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=119.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+.+.+...+.. ...+.++||+||||||||++|+++|+.++.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 46899999999999999877664431 123568999999999999999999998854
Q ss_pred ----------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHH
Q 011935 273 ----------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTL 330 (474)
Q Consensus 273 ----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l 330 (474)
+++.++..+-.+...++.++..+. ...|++|||+|.+. ....
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------------~~a~ 145 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------------KGAF 145 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------------HHHH
Confidence 344455444335567888776653 35699999999873 2346
Q ss_pred hhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 331 SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 331 ~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+.|+..++. .+...++|++|+.++.+++++++ |+ ..++|..++.++....++..+...
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence 778877774 23567888888889999999998 88 578999999999888888777544
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=2.2e-14 Score=145.05 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=111.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----CcEEEEec
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FDIYDLEL 279 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~~~~l~~ 279 (474)
...|.+|++++|++++.+.|...+. . + . ..++|||||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 5689999999999998887765433 1 1 1 23699999999999999999999972 34666666
Q ss_pred ccccChhHHHHHHHh---h------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEE
Q 011935 280 TSIYSNSDLRRILLS---T------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERII 350 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~---~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ii 350 (474)
++..+...++..+.. . .+..|++|||+|.+.. ...+.|+..++.. +....+
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------------~aq~aL~~~lE~~----~~~t~~ 132 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------------GAQQALRRTMEIY----SNTTRF 132 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------------HHHHHHHHHHhcc----cCCceE
Confidence 665444455544332 1 1356999999998842 1234455556532 133557
Q ss_pred EEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 351 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 351 I~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
|++||.+..+.++|++ |+ ..++|+.|+.++....+.......
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHc
Confidence 7889999999999998 87 478999999999888887766543
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.9e-14 Score=151.45 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=121.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------------- 271 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------------- 271 (474)
...|.+|++|+|++.+++.+...+.. ...+.++||+||||||||++|+.+|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 35789999999999998877654431 13467899999999999999999998652
Q ss_pred -----------CcEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 272 -----------FDIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 272 -----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
.+++.++.++-.+.++++.++.... ..-|++|||+|.+. ....+.||
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls----------------~~A~NaLL 137 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS----------------NSAFNALL 137 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC----------------HHHHHHHH
Confidence 4677888776656677888876642 35699999999873 23567888
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.- +...++|++|+.++++.+.++. |+ ..++|..++.++....+...+...
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence 888753 3567888888999999999998 88 568999999999888877766543
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2e-14 Score=153.16 Aligned_cols=156 Identities=15% Similarity=0.296 Sum_probs=118.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 35789999999999999988776642 123567999999999999999999998854
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.++-..-+.++.++.... +..|++|||+|.+.. ...+.||
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------------~a~naLL 140 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------------HSFNALL 140 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------------HHHHHHH
Confidence 266677655445667777775532 246999999998842 3467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. ++.+.+|++|+.+.++.+.+++ |+ ..++|..++.++....+...+...
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 888753 3557788888889999999988 87 577899888888777666665443
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.4e-14 Score=153.80 Aligned_cols=154 Identities=17% Similarity=0.306 Sum_probs=118.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 4789999999999999877665541 123566899999999999999999998865
Q ss_pred -----------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 273 -----------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 273 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+++.++..+-...+.++.++.... ..-|+||||+|.+. ....+.||.
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls----------------~~a~NALLK 141 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS----------------RHSFNALLK 141 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC----------------HHHHHHHHH
Confidence 345555543234456777665532 34699999999883 345788888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.|+. .++.+++|++|+.+..|.+.++. |+ ..++|..++.++....+...+..
T Consensus 142 tLEE----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 142 TLEE----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred HHHc----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 8875 33567788888899999999998 87 78999999999988888877643
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.6e-14 Score=156.07 Aligned_cols=154 Identities=18% Similarity=0.315 Sum_probs=115.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD------------ 273 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~------------ 273 (474)
..|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.++..
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 5689999999999999887665441 1235678999999999999999999998653
Q ss_pred ------------EEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 274 ------------IYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 274 ------------~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
++.++..+......++.+..... ...|+||||+|.+. ....+.||.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------------~eAqNALLK 141 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------------RSSFNALLK 141 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------------HHHHHHHHH
Confidence 23333332223345666654432 34699999999883 345788888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.|+.- ...+++|++|+.+..|.+.++. |+ ..++|..++.++....+++.+..
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 88752 3457777888889999999998 88 68999999999988888876654
No 72
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=1.1e-14 Score=164.15 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=117.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
-.|..++.++|.+...+.+++.+.. ..+.+++|+||||||||++++++|..+ +.+++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 3467899999999987777765552 234689999999999999999999988 78899
Q ss_pred EEecccccC--------hhHHHHHHHhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 276 DLELTSIYS--------NSDLRRILLST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
.++++.+.. +..++.+|... ..++||||||||.+.+..+ ... ....... |...+.
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~--~~~---~~d~~~~---lkp~l~------ 304 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK--ADG---AMDAGNM---LKPALA------ 304 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC--Ccc---chhHHHH---hcchhh------
Confidence 988887642 24577777653 3578999999999975321 110 1111222 222221
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 345 GDERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 345 ~~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+.+.+|++|+..+ .+|+|+.| ||+ .|.++.|+.+++..+++......
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 14688889888776 48999999 997 58899999999999998775543
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=5.4e-14 Score=143.85 Aligned_cols=156 Identities=19% Similarity=0.354 Sum_probs=116.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------------- 271 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------------- 271 (474)
-..|.+|++++|++.+++.+.+.+.. ...+..+|||||||+|||++++++|+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 45788999999999999988775542 12356799999999999999999998874
Q ss_pred -----------CcEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 272 -----------FDIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 272 -----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
.+++.++.........++.++..+. .+.|++|||+|.+. ....+.|+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------------~~~~~~Ll 138 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------------KSAFNALL 138 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------------HHHHHHHH
Confidence 2345555443333445666665542 34699999999773 23456778
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. +...++|++||+++.+.+++.+ |+ ..++|+.|+.++...++..++...
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 777652 3457788888999999999988 87 478999999999999998877554
No 74
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-14 Score=150.24 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=133.6
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC----CcEEEEecccccC--h
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR----FDIYDLELTSIYS--N 285 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~----~~~~~l~~~~~~~--~ 285 (474)
.+++-.+..|++..++...+ +..+.++||+||+|||||.|++++++++. +++..++|+.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666677777665533322 33456899999999999999999999874 4566788888763 2
Q ss_pred hHH----HHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC
Q 011935 286 SDL----RRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 359 (474)
Q Consensus 286 ~~l----~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~ 359 (474)
+.+ ...|.++ .+|+||++||+|++++..+. ..+........+..+|+.+-..+...+..+.+|+|.+....
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~---e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt 553 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN---ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT 553 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc---cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh
Confidence 333 3444444 47999999999999872111 11113344455666776655444444556789999999999
Q ss_pred CCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCC-CCHHHH
Q 011935 360 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEV 419 (474)
Q Consensus 360 Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~-~tpa~i 419 (474)
|+|-|..|++|+.++.+|.|...+|.+|+++.+.... ....+.++.-+..+++ |.+-|+
T Consensus 554 l~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 554 LNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred cChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhH
Confidence 9999999999999999999999999999999886542 2223344444443332 555444
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.7e-14 Score=147.97 Aligned_cols=156 Identities=21% Similarity=0.370 Sum_probs=117.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+..+|||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 45789999999999998888776552 123556899999999999999999998842
Q ss_pred -----------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 273 -----------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 273 -----------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+++.++..+......++.+.... ..+.||||||+|.+. ...++.|+.
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------------~~a~naLLk 138 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------------KSAFNALLK 138 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------------HHHHHHHHH
Confidence 25556654333445556554332 245799999999762 245677888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++.- +...++|++||.+..+.+++.+ |+. .++|+.++.++....+...+...
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHc
Confidence 87752 3457888889999999999998 874 78999999999888888776544
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=8.3e-14 Score=143.85 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=114.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc---------------
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD--------------- 273 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~--------------- 273 (474)
..|++|+|++.+++.+...+..... .+...+...+.+|||+||||+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3589999999999999888774432 2334455567899999999999999999999976432
Q ss_pred --------EEEEeccc-ccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhc
Q 011935 274 --------IYDLELTS-IYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFID 338 (474)
Q Consensus 274 --------~~~l~~~~-~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id 338 (474)
++.+.... ...-..++.++..+. ...|++|||+|.+.. ...+.||..|+
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------------~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------------RAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------------HHHHHHHHHhh
Confidence 22332221 123456777776543 245999999999842 23467888887
Q ss_pred CcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 339 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 339 g~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
.- +.+.++|++|++++.+.|++++ |+ ..|.|+.|+.++..+.+..
T Consensus 143 ep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 143 EP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred cC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 52 3446677777779999999999 88 6899999999998877764
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=1.8e-13 Score=140.64 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=108.9
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---------CcEEEEeccc
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---------FDIYDLELTS 281 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---------~~~~~l~~~~ 281 (474)
.+.++|.++..+.|...+...+.. ..+.+++++||||||||++++++++.+. ..++.++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 357899999999998887765431 2346799999999999999999998763 5677888765
Q ss_pred ccChhH--------------------------HHHHHHh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhh
Q 011935 282 IYSNSD--------------------------LRRILLS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSG 332 (474)
Q Consensus 282 ~~~~~~--------------------------l~~l~~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~ 332 (474)
..+... +..++.. ..++.||+|||+|.+... ....+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------------~~~~L~~ 151 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------------DDDLLYQ 151 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------------CcHHHHh
Confidence 433211 1111111 234679999999998520 1123444
Q ss_pred HHhhhcCcccCCCCceEEEEecCCCC---CCCccccCCCccc-eEEEeCCCCHHHHHHHHHHhhc
Q 011935 333 ILNFIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 333 LL~~idg~~~~~~~~~iiI~tTN~~~---~Ld~aLlrpGRfd-~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
|+...+. ....+..+.+|+++|.++ .+++.+.+ ||. ..|+|++++.+++.++++..+.
T Consensus 152 l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 152 LSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred Hhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 5443211 111224578889998875 57888877 775 6799999999999999998875
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.5e-14 Score=150.19 Aligned_cols=156 Identities=17% Similarity=0.314 Sum_probs=119.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------------- 271 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------------- 271 (474)
...|.+|++|+|++.+++.+...+.. ...+..||||||+|||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 35789999999999999988776652 12457899999999999999999999874
Q ss_pred -----------CcEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 272 -----------FDIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 272 -----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
.+++.++.++-.+-+.++.+..... ..-|++|||+|.+. ....+.||
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt----------------~~a~naLL 140 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS----------------TGAFNALL 140 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------------HHHHHHHH
Confidence 3566666654444566777766542 34699999999883 23467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. +...++|++|+.++.+++++++ |+. .+.|+.|+.++....+...+...
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHc
Confidence 887753 3557888888889999999998 885 68899999999888887766543
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=2.3e-14 Score=161.97 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=132.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
-.|..++.++|.++..+.+++.+.. ..+.+.+|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 3567899999999987777665542 235688999999999999999999986 67888
Q ss_pred EEecccccC--------hhHHHHHHHhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 276 DLELTSIYS--------NSDLRRILLST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
.++++.+.. +..++.+|... ..++||||||||.+.+... .. . .....+-|...+.
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~--~~-----~-~~d~~~~Lk~~l~------ 299 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK--AE-----G-AMDAGNMLKPALA------ 299 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC--Cc-----c-hhHHHHHhchhhh------
Confidence 888776531 24677777665 3589999999999975211 10 0 1111222222221
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCc---HHHHHhhhcCCCCCH
Q 011935 345 GDERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSL---FGEIEGLIQSTDVTP 416 (474)
Q Consensus 345 ~~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l---~~~i~~l~~~~~~tp 416 (474)
.+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+.......|.. ...+...+. ++
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~---ls- 372 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT---LS- 372 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH---hc-
Confidence 24578888888663 47999999 996 58999999999999998775543323322 222222221 11
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 011935 417 AEVAEELMKADDADVALEGLVNFLKRKRI 445 (474)
Q Consensus 417 a~i~~~l~~~~~~~~al~~l~~~l~~~~~ 445 (474)
.+++-...-|+.|++-+.+++...+.
T Consensus 373 ---~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 373 ---HRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred ---cccccccCCchHHHHHHHHHHHHHHh
Confidence 11111223477777777776655443
No 80
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=1.3e-14 Score=160.50 Aligned_cols=158 Identities=19% Similarity=0.246 Sum_probs=112.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLE 278 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~ 278 (474)
-.++.++|.++..+.+++.+... .+.++||+||||||||++++++|..+ +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 45888999999999888765531 24688999999999999999999875 55667766
Q ss_pred cccccC--------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCce
Q 011935 279 LTSIYS--------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 348 (474)
Q Consensus 279 ~~~~~~--------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ 348 (474)
+..+.. +..++.++... ..++||||||||.+++...... ......+-|...+. .+++
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-------g~~d~~nlLkp~L~------~g~i 316 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-------GQVDAANLIKPLLS------SGKI 316 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-------cHHHHHHHHHHHHh------CCCe
Confidence 655431 34566666544 3578999999999976321100 11111122222222 1468
Q ss_pred EEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 349 IIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 349 iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+|++||.++ ..|++|.| ||+ .|.++.|+.+++..|++.+....
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~y 365 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKY 365 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHh
Confidence 8999998764 57999999 996 79999999999999999775543
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.7e-14 Score=152.24 Aligned_cols=156 Identities=18% Similarity=0.319 Sum_probs=118.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+.+|||+||||||||++|+++|+.++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 35789999999999999988776552 134578999999999999999999998753
Q ss_pred ------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++..+-.....++.++... ....|+||||+|.+. ....+.||
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------------~~A~NALL 140 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------------KSAFNAML 140 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------------HHHHHHHH
Confidence 34455544434456777777643 235799999999772 23467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..|+.. .+.+.+|++||.+..+.+.++. |+ ..+.|+.++.++....+...+...
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 888753 2457788888999999999987 88 678899999999888888777654
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=3.2e-14 Score=137.87 Aligned_cols=149 Identities=22% Similarity=0.297 Sum_probs=103.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------cEEEEe
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------DIYDLE 278 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------~~~~l~ 278 (474)
...|.+|++++|++.+.+.+...+.. - --.+||||||||||||+.|+++|.++.. .+..++
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 57899999999999999988877663 1 1247999999999999999999999865 233344
Q ss_pred cccccCh----------hHHHHHHHhh-c----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC
Q 011935 279 LTSIYSN----------SDLRRILLST-T----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS 343 (474)
Q Consensus 279 ~~~~~~~----------~~l~~l~~~~-~----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~ 343 (474)
.++-... +.+....... . ..-|++|||+|.+. +...+.|...|+...
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----------------sdaq~aLrr~mE~~s-- 157 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT----------------SDAQAALRRTMEDFS-- 157 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh----------------HHHHHHHHHHHhccc--
Confidence 4433211 1111111100 1 12599999999884 345677888888742
Q ss_pred CCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 011935 344 CGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 389 (474)
Q Consensus 344 ~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~ 389 (474)
....+|+.||+.+.|++.+.. |+. +..|+....+.....++
T Consensus 158 --~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 158 --RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLE 198 (346)
T ss_pred --cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHH
Confidence 457888999999999999998 986 45665555444333333
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=7.4e-14 Score=149.32 Aligned_cols=155 Identities=16% Similarity=0.315 Sum_probs=116.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
-..|.+|++++|++.+++.+...+.. ...++++||+||||||||++|+++|+.+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 45799999999999999888765431 123578999999999999999999998742
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++..+...-..++.+..... ...|++|||+|.+.. ...+.||
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------------~A~NaLL 140 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------------SAWNALL 140 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------------HHHHHHH
Confidence 455565544334456676664432 346999999998732 2356788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++.. +...++|++|+.+..+.+++++ |+. .++|+.++.++....+...+..
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHH
Confidence 887752 3457888888889999999998 885 7899999999988888776543
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9e-14 Score=150.17 Aligned_cols=156 Identities=16% Similarity=0.281 Sum_probs=117.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+..- ..+..|||+||+|||||++++++|+.++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 357899999999999988777655411 23567899999999999999999998864
Q ss_pred -----------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhH
Q 011935 273 -----------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLT 329 (474)
Q Consensus 273 -----------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 329 (474)
+++.++..+-..-+.+++++.... ..-|++|||+|.+.. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------------~a 140 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------------TA 140 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------------HH
Confidence 345555444334567777776532 235999999998842 34
Q ss_pred HhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 330 LSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 330 l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+.||..++. ..+..++|++|+.+..+.+.++. |+ ..++|..++.++....++..+...
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 6778887765 23557788888889999999988 87 688999999999888887766543
No 85
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=9.6e-14 Score=151.15 Aligned_cols=155 Identities=21% Similarity=0.338 Sum_probs=116.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
-..|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 46799999999999999888776652 134578999999999999999999998754
Q ss_pred ---------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhh
Q 011935 273 ---------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFI 337 (474)
Q Consensus 273 ---------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~i 337 (474)
+++.++...-.+...++.+..... ...|++|||+|.+.. ...+.||..|
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------------~A~NALLKtL 142 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------------SAFNALLKTL 142 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------------HHHHHHHHHh
Confidence 223333322223455676665542 356999999998732 3467888888
Q ss_pred cCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 338 DGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 338 dg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
+.. +..+++|++|+.++.|.+++++ |+. .++|..++.++....+...+..
T Consensus 143 EEP----P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 143 EEP----PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred hcC----CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHH
Confidence 753 3567888888999999999998 884 8999999999988777765543
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=147.50 Aligned_cols=155 Identities=17% Similarity=0.289 Sum_probs=115.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+++.+...+.. ...+..+||+||||||||++|+++|+.+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 35689999999999999887665541 123457999999999999999999998753
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++...-...+.++.++.... ...|++|||+|.+. ....+.||
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------------~~a~naLL 140 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------------KQSFNALL 140 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc----------------HHHHHHHH
Confidence 455555533334455666654432 45699999999873 23467888
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+..
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHH
Confidence 888753 3457777777788889888888 88 68999999999988777776543
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7.6e-14 Score=149.54 Aligned_cols=154 Identities=18% Similarity=0.310 Sum_probs=116.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4688999999999999987765552 123567999999999999999999998854
Q ss_pred -----------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 273 -----------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 273 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+++.++.+.-.....++.++..+. ...|++|||+|.+. ....+.||.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls----------------~~a~naLLK 141 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS----------------KSAFNAMLK 141 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC----------------HHHHHHHHH
Confidence 345555443334566777765542 34699999999883 234677888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.++.. ++..++|++|+.+..+.+.++. |+ ..++|+.++.++....+...+..
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHH
Confidence 88763 3557788888889899888888 87 68899999999988777776643
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=148.06 Aligned_cols=156 Identities=19% Similarity=0.331 Sum_probs=117.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+..|||+||+|||||++|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 35789999999999999988776551 123456899999999999999999998752
Q ss_pred --------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhh
Q 011935 273 --------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSG 332 (474)
Q Consensus 273 --------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~ 332 (474)
+++.++.++..+-+.++.+.... ...-|++|||+|.+. ....+.
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------------~~A~NA 137 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------------TAGFNA 137 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------------HHHHHH
Confidence 35555554443455666554433 235699999999883 235678
Q ss_pred HHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 333 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 333 LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
||..|+.. .+..++|++|+.++++.++++. |+ .+++|..++.++....+...+...
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~e 193 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQE 193 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 88888753 3568888888999999999998 86 689999999999888887766544
No 89
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.3e-13 Score=153.58 Aligned_cols=156 Identities=17% Similarity=0.276 Sum_probs=117.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+..|||+||+|||||+++++||+.+.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 46799999999999999887766541 123457999999999999999999998853
Q ss_pred --------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhh
Q 011935 273 --------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSG 332 (474)
Q Consensus 273 --------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~ 332 (474)
+++.++..+...-+.++.+.... ....|+||||+|.+. ....+.
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------------~~a~Na 139 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------------PQGFNA 139 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------HHHHHH
Confidence 34555554433445666654332 245699999999883 234677
Q ss_pred HHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 333 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 333 LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
||..|+.. ....++|++|+.+++|.++|+. |+ .+++|..++.++...++...+...
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 88888764 3568888888999999999998 87 588999999999888888776443
No 90
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.3e-13 Score=153.48 Aligned_cols=160 Identities=23% Similarity=0.212 Sum_probs=116.2
Q ss_pred Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHH-
Q 011935 211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDL- 288 (474)
Q Consensus 211 f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l- 288 (474)
++. ..|.+++|+.|.+.+...... +...+..++|+||||||||++++.+|+.++.+++.++++.+.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 554 889999999998877644321 22234468999999999999999999999999999988876543333
Q ss_pred --------------HHHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc----c-------
Q 011935 289 --------------RRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW----S------- 342 (474)
Q Consensus 289 --------------~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~----~------- 342 (474)
.+.+..+. ...||+|||||++... . .....+.|+..+|.-. .
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~--~----------~g~~~~aLlevld~~~~~~~~d~~~~~~ 460 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD--M----------RGDPASALLEVLDPEQNVAFSDHYLEVD 460 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc--c----------CCCHHHHHHHHhccccEEEEeccccccc
Confidence 22333332 4569999999998531 1 1123466777666310 0
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 343 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 343 ~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..-.++++|+|+|.. .++|+|+. ||. .|.++.++.++..+|+++++.
T Consensus 461 ~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 461 YDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 011458899999987 59999999 996 689999999999999999984
No 91
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3e-13 Score=139.33 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=113.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
-..|.+|++++|++..++.+...+.. ...+.++|||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 46789999999999998887776652 134578999999999999999999998743
Q ss_pred cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCC
Q 011935 273 DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGD 346 (474)
Q Consensus 273 ~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~ 346 (474)
.++.++.........++.++..+. .+.||+|||+|.+.. ..++.|+..++.. +.
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------------~~~~~ll~~le~~----~~ 137 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------------AAFNAFLKTLEEP----PA 137 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------------HHHHHHHHHHhCC----CC
Confidence 233343333333467777776532 356999999997732 2356777777652 24
Q ss_pred ceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 347 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 347 ~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++|++|+.+..+.+++.+ |+. .++++.|+.++...++......
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHH
Confidence 46777788888999999988 764 6899999999988777765543
No 92
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=3.4e-13 Score=132.55 Aligned_cols=129 Identities=23% Similarity=0.244 Sum_probs=92.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHH---------------------------------HHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLR---------------------------------RIL 292 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~---------------------------------~l~ 292 (474)
.+.+||+||||||||++|+++|..+|.+++.+++..-....++. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 36899999999999999999999999999999876533222210 112
Q ss_pred HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc----cC--------CCCceEEEEecCCC---
Q 011935 293 LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW----SS--------CGDERIIVFTTNHK--- 357 (474)
Q Consensus 293 ~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~----~~--------~~~~~iiI~tTN~~--- 357 (474)
....++.+|+||||+.+- ..+.+.|+..++.-. .. ...+..||+|+|..
T Consensus 101 ~A~~~g~~lllDEi~r~~----------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSK----------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHcCCEEEEcchhhCC----------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 223456899999999863 233455555554210 00 01245688999975
Q ss_pred --CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 358 --ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 358 --~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..++++|++ || ..+.+++|+.++..+|+....+
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 356899999 98 6899999999999999988764
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.52 E-value=1.3e-13 Score=148.03 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=109.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcE
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDI 274 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~ 274 (474)
...|.+|++++|.+..++.+...+. .+.+.++||+||||||||++|+++++++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 3578899999999999888764321 1235689999999999999999998753 3578
Q ss_pred EEEeccccc-ChhHHH-HHH--------------------------HhhcCCcEEEEecccccccccccCCCCCCCCCch
Q 011935 275 YDLELTSIY-SNSDLR-RIL--------------------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNT 326 (474)
Q Consensus 275 ~~l~~~~~~-~~~~l~-~l~--------------------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~ 326 (474)
+.++|+... ++..+. .++ .....+++|||||||.+..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~--------------- 189 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP--------------- 189 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH---------------
Confidence 889886421 111110 000 1122458999999998832
Q ss_pred hhHHhhHHhhhcCc--------cc-----------------CCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCH
Q 011935 327 KLTLSGILNFIDGL--------WS-----------------SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 381 (474)
Q Consensus 327 ~~~l~~LL~~idg~--------~~-----------------~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~ 381 (474)
...+.||..++.- +. .+.+-++|++|||.++.++|++++ |+. .|.|+.++.
T Consensus 190 -~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ 265 (531)
T TIGR02902 190 -VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLD 265 (531)
T ss_pred -HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCH
Confidence 2334455444210 00 011236777788899999999999 984 789999999
Q ss_pred HHHHHHHHHhhccc
Q 011935 382 HGFKVLASNYLGIK 395 (474)
Q Consensus 382 ~~~~~l~~~~l~~~ 395 (474)
+++.+++++.+...
T Consensus 266 eei~~Il~~~a~k~ 279 (531)
T TIGR02902 266 EEIKEIAKNAAEKI 279 (531)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987643
No 94
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=4e-13 Score=126.14 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=140.6
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEE
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIY 275 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~ 275 (474)
-..+++..+|..+.+|+|.+.+|+.+.+....|+... +..++||+|..|||||+|++|+-+++ +..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 3455677788899999999999999999999998643 35789999999999999999998877 56789
Q ss_pred EEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 276 DLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 276 ~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
.++-.++..-..|...+...+.+-|||+||+- +. ........|-..+||-....+.+++|.+|+|
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe-------------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLS--FE-------------EGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCC--CC-------------CCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 99888888778888888888899999999973 21 1123456677788887777888999999999
Q ss_pred CCCCCCcccc--------------------CCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 356 HKERIDPALL--------------------RPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 356 ~~~~Ld~aLl--------------------rpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+...|+.... =..||...+.|+.|+.++..+|+.+|....
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 8766542211 123999999999999999999999998655
No 95
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.51 E-value=1.9e-13 Score=141.82 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=113.4
Q ss_pred CCcc-cccChhHHHHHHHHHHHHHhhHHHHHHh--CC-CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 210 TFDT-LAMDPELKQMILDDLDRFLRRKEFYRRV--GK-AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 210 ~f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~--g~-~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.++. |+|++++|+.+...+....++-...... +. .+..++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3554 8999999999977665443322110000 11 24578999999999999999999999999999999887642
Q ss_pred -------hhHHHHHHHh------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc----CCC--
Q 011935 285 -------NSDLRRILLS------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS----SCG-- 345 (474)
Q Consensus 285 -------~~~l~~l~~~------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~----~~~-- 345 (474)
+..+..++.. ...++||||||||.+.... .+.+...+.....+.+.||..|||-.. ..+
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~--~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKS--ENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcccc--CCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 1223333322 2367999999999996531 111111111123466788888886421 111
Q ss_pred ---CceEEEEecCCCC----------------------------------------------------CCCccccCCCcc
Q 011935 346 ---DERIIVFTTNHKE----------------------------------------------------RIDPALLRPGRM 370 (474)
Q Consensus 346 ---~~~iiI~tTN~~~----------------------------------------------------~Ld~aLlrpGRf 370 (474)
.+.++|.|+|-.. .+.|+|+- |+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CC
Confidence 2345666666400 02344444 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHh
Q 011935 371 DVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 371 d~~I~~~~p~~~~~~~l~~~~ 391 (474)
|..+.|...+.+++.+|+...
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~ 324 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEP 324 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHH
Confidence 999999999999998888743
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.7e-13 Score=148.38 Aligned_cols=155 Identities=16% Similarity=0.283 Sum_probs=117.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4689999999999999888776552 124568999999999999999999998753
Q ss_pred -----------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 273 -----------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 273 -----------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+++.++..+....++++.+..... ..-|++|||+|.+. ....+.||.
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt----------------~~a~naLLk 141 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS----------------TNAFNALLK 141 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC----------------HHHHHHHHH
Confidence 245555444334456776665432 34699999999883 234678888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.|+.. .+.+++|++|+.+++|.+.++. |+ ..++|..++.++....+...+...
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence 88753 3568888999999999999998 87 478999999988877777665433
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.4e-13 Score=146.11 Aligned_cols=155 Identities=17% Similarity=0.300 Sum_probs=114.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 46799999999999998877665541 122468999999999999999999998864
Q ss_pred ------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++...-..-+.++.+.... ....||||||+|.+. ....+.||
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt----------------~~a~naLL 140 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT----------------REAFNALL 140 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------------HHHHHHHH
Confidence 25555543222334455443222 245799999999883 23467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++.. ....++|++||.+..+.+.+++ |+ .+|+|+.++.++....+...+..
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHH
Confidence 888752 2457888999999999999988 88 47899999999988888775543
No 98
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=3.7e-13 Score=129.71 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=100.6
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+....+.+||+.++.+... ....+.. .........++||||||||||+|++|+|+++ +.....+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3456778999999766432 2221111 1111123457999999999999999999986 344455554
Q ss_pred ccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC-CCC
Q 011935 280 TSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKE 358 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-~~~ 358 (474)
.... ....+.+....+..+|+||||+.+.+ .......+..+++.+. .. +..++|+|+| .|.
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~-----------~~~~~~~l~~l~n~~~---~~--~~~illits~~~p~ 137 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG-----------NEEWELAIFDLFNRIK---EQ--GKTLLLISADCSPH 137 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC-----------ChHHHHHHHHHHHHHH---Hc--CCcEEEEeCCCChH
Confidence 3221 11224444555678999999998743 1112334455555442 21 2345555555 565
Q ss_pred CCC---ccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 359 RID---PALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 359 ~Ld---~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++ |.|.+..+....++++.|+.+++.++++....
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 554 88988444457889999999999999988764
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.3e-13 Score=141.25 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=112.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.+...+.. ...+..+|||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 5789999999999998877765541 134578999999999999999999998743
Q ss_pred ------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.....+-+.++.+.... ..+.|++|||+|.+.. ...+.|+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------------~~~n~LL 142 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------------EAFNSLL 142 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------------HHHHHHH
Confidence 34445433322334555443222 3568999999998832 2356788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..++.. ++..++|++||.+..|.+++.+ |+. .++|+.++.++....+...+.
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHH
Confidence 888753 2457788888989999999998 884 689999999998877776654
No 100
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.9e-13 Score=142.51 Aligned_cols=156 Identities=17% Similarity=0.301 Sum_probs=113.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+.+.+...+.. ...+..||||||||+|||++|+.+|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 45789999999999999888776642 123567999999999999999999998752
Q ss_pred ------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.++-.....++.+.... ..+.|++|||+|.+. ....+.|+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt----------------~~a~naLL 140 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT----------------KEAFNALL 140 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------------HHHHHHHH
Confidence 34444443323334455554332 235799999999773 22356777
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. +...++|++|+.++.+++++.+ |+. .+.|+.++.++....+...+...
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHc
Confidence 777653 3456777777888889999988 774 78999999999988888876544
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=6.2e-13 Score=134.93 Aligned_cols=155 Identities=12% Similarity=0.235 Sum_probs=105.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----CcEEEEec
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FDIYDLEL 279 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~~~~l~~ 279 (474)
-..|.+|++++|.+++++.+...+.. + ...++|||||||||||++|+++|+++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 46799999999999988887665431 1 123699999999999999999999884 34566676
Q ss_pred ccccC--------------------------hhHHHHHHHhh-------cCCcEEEEecccccccccccCCCCCCCCCch
Q 011935 280 TSIYS--------------------------NSDLRRILLST-------TNRSILVIEDVDCSVEMKDRQNDGASVGSNT 326 (474)
Q Consensus 280 ~~~~~--------------------------~~~l~~l~~~~-------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~ 326 (474)
.++.. ...++.++... ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 55321 01122222221 2356999999997732
Q ss_pred hhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 327 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 327 ~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.....|+..++... ....+|++++.+..+.++|.+ |+ ..++++.|+.+++..++...+...
T Consensus 140 -~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 140 -DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred -HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 11234445554321 224466677777788888887 76 578999999999988888876544
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.7e-13 Score=141.01 Aligned_cols=155 Identities=16% Similarity=0.277 Sum_probs=111.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.+...+.. ...+.+||||||||+|||++|+++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 35789999999999999877665541 123567999999999999999999998854
Q ss_pred --------------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCch
Q 011935 273 --------------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNT 326 (474)
Q Consensus 273 --------------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~ 326 (474)
+++.++......-+.++.+..... ..-|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 233333333223456666655542 356999999998832
Q ss_pred hhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 327 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 327 ~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
...+.|+..++.. ....++|++|+.+..+-+++.+ |+. .++|+.++.++....+...+..
T Consensus 142 -~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 142 -AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred -HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHH
Confidence 2356677777642 2456777777778888889887 775 7899999999888777776543
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.8e-13 Score=141.00 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=117.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------------- 271 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------------- 271 (474)
-..|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35789999999999999888776541 13466789999999999999999999873
Q ss_pred -----------CcEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 272 -----------FDIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 272 -----------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
.+++.++.++-..-..++.+..... ..-|++|||+|.+. ....+.||
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt----------------~~A~NALL 138 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT----------------KEAFNALL 138 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------------HHHHHHHH
Confidence 2355555443234467777765432 24699999999883 34567788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. +....+|++|+.+..+.++++. |+ .+++|..++.++....+...+...
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHc
Confidence 888753 3456777888888999999998 86 588999999999888877766544
No 104
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=6.2e-13 Score=137.43 Aligned_cols=225 Identities=18% Similarity=0.251 Sum_probs=133.3
Q ss_pred Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHh----CCC-CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRV----GKA-WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 211 f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~----g~~-~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
|+. |+|+++.++.+...+....++-...... +.+ .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 6899999999877664433321100000 111 1467999999999999999999999999999888776531
Q ss_pred --------hhHHHHHHHh------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc----CC--
Q 011935 285 --------NSDLRRILLS------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS----SC-- 344 (474)
Q Consensus 285 --------~~~l~~l~~~------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~----~~-- 344 (474)
...+..++.. ...++||||||||.+..... ..+...+.....+.+.||..|+|... ..
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~--~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSE--NPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhc--cccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 1223333332 23578999999999865221 11111111122456677888876532 11
Q ss_pred ---CCceEEEEecCCC---------------------------C-----------------------CCCccccCCCccc
Q 011935 345 ---GDERIIVFTTNHK---------------------------E-----------------------RIDPALLRPGRMD 371 (474)
Q Consensus 345 ---~~~~iiI~tTN~~---------------------------~-----------------------~Ld~aLlrpGRfd 371 (474)
..+.++|+|+|-. + .+.|+|+- |+|
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCC
Confidence 1345788888851 0 02355554 999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC----CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 011935 372 VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS----TDVTPAEVAEELMKADDADVALEGLVNFLKRKRI 445 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 445 (474)
..+.|...+.+++.+|+..-+. .+..++.+++.. ..++++-+....-...+++...|.|...++..-.
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n------~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~ 382 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKN------ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLL 382 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHH------HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhH
Confidence 9999999999998888876432 122333333322 2355554433333334555555666665555443
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.1e-13 Score=143.87 Aligned_cols=156 Identities=17% Similarity=0.318 Sum_probs=117.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc-----------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD----------- 273 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~----------- 273 (474)
...|.+|++|+|++.+++.|...+.. | ..+.++||+||+|+|||++|+++|+.++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 46789999999999999988775541 1 235689999999999999999999988542
Q ss_pred ------------------EEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhH
Q 011935 274 ------------------IYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLT 329 (474)
Q Consensus 274 ------------------~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 329 (474)
++.++..+..+-..++.++.... ..-|+||||+|.+. ...
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------------~~a 148 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------------TAA 148 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------------HHH
Confidence 23333333334567777765542 35699999999883 234
Q ss_pred HhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 330 LSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 330 l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+.||..|+.. .+..++|++|+.++++.+.++. |+ ..++|..++.++....+...+...
T Consensus 149 ~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 149 FNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred HHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 67788888753 3457788888888889999988 88 579999999999888888876543
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=3.4e-13 Score=149.31 Aligned_cols=159 Identities=13% Similarity=0.258 Sum_probs=113.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRIL 292 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~ 292 (474)
.|+|++++++.|.+.+......- ... ..|..++||+||||||||.+|+++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~-~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHE-HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCC-CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 47899999999988776542210 000 11234699999999999999999999999999999998775322222222
Q ss_pred ---------------Hh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc-c-cCCC-----Cc
Q 011935 293 ---------------LS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL-W-SSCG-----DE 347 (474)
Q Consensus 293 ---------------~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~-~-~~~~-----~~ 347 (474)
.. ....+||+|||||.+.+ ...+.|+..+|.- . ...| .+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 11 23468999999998832 3566777777632 1 1111 35
Q ss_pred eEEEEecCCC-------------------------CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 348 RIIVFTTNHK-------------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 348 ~iiI~tTN~~-------------------------~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++|+|||.- ..+.|.|+. |+|.+|.|++.+.++..+|+..++.
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 7899999921 125577777 9999999999999999999988874
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=5.4e-13 Score=127.71 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=100.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
+...+.+|++.+.. ..+.+.+.+..+.. ...+++++|+||||||||++++++++++ +.+++.+++.
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 7 GLPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 34556778888731 22334444444332 1235789999999999999999999887 4678888888
Q ss_pred cccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC-CCCC
Q 011935 281 SIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKER 359 (474)
Q Consensus 281 ~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-~~~~ 359 (474)
.+.. .....+.......+|+|||+|.+.. .......+..+++.+.. . +. .+|+|++ .+..
T Consensus 76 ~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~-----------~~~~~~~L~~~l~~~~~---~--~~-~iIits~~~~~~ 136 (226)
T TIGR03420 76 ELAQ--ADPEVLEGLEQADLVCLDDVEAIAG-----------QPEWQEALFHLYNRVRE---A--GG-RLLIAGRAAPAQ 136 (226)
T ss_pred HHHH--hHHHHHhhcccCCEEEEeChhhhcC-----------ChHHHHHHHHHHHHHHH---c--CC-eEEEECCCChHH
Confidence 7742 2234444445567999999998732 11112334444443321 1 12 3445555 4444
Q ss_pred CC---ccccCCCcc--ceEEEeCCCCHHHHHHHHHHhhc
Q 011935 360 ID---PALLRPGRM--DVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 360 Ld---~aLlrpGRf--d~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
++ +.|.+ |+ ...|.+|.|+.+++..+++.+..
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 32 67777 66 47899999999999999887654
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=6.5e-13 Score=143.01 Aligned_cols=154 Identities=18% Similarity=0.313 Sum_probs=115.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 35789999999999999988776652 123567999999999999999999998753
Q ss_pred ------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++...-..-..++.+...+ ...-|++|||+|.+. ....+.||
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls----------------~~a~naLL 140 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS----------------NSAFNALL 140 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC----------------HHHHHHHH
Confidence 34444433322345666665332 245699999999883 23467788
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..++. ++...++|++|+.+..+.++++. |+. .++|..++.++....+.....
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHH
Confidence 88874 33567888888889999999998 885 689999999998888877653
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.8e-13 Score=142.90 Aligned_cols=153 Identities=17% Similarity=0.295 Sum_probs=112.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------- 272 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------- 272 (474)
..|.+|++|+|++.+++.+...+.. ...+.+|||+||||||||++|+++|+.+..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 5789999999999999987664431 134567999999999999999999999865
Q ss_pred -------------------cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchh
Q 011935 273 -------------------DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTK 327 (474)
Q Consensus 273 -------------------~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~ 327 (474)
+++.++.......+.++.+.... ...-|++|||+|.+..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------------
Confidence 22333332222346677666554 2456999999998832
Q ss_pred hHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 328 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 328 ~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
...+.||..|+.. ++..++|++|+.+..|.+++.+ |+ ..++|..++.++....+...+.
T Consensus 142 ~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHH
Confidence 2357788888753 3456777777888999999988 77 5889999999998877776554
No 110
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=142.18 Aligned_cols=193 Identities=16% Similarity=0.219 Sum_probs=126.1
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEeccc
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLELTS 281 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~~~~ 281 (474)
+.|.+.++..++|...+...+.. ..+...++++||||||||++++.+.+++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 57788888888888877766542 1223335699999999999999998776 25678899865
Q ss_pred ccCh-----------------------hHHHHHHHhhc----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 282 IYSN-----------------------SDLRRILLSTT----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 282 ~~~~-----------------------~~l~~l~~~~~----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+... ..+..+|.... ...||+|||||.+.. ..+..|-.|+
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k-------------K~QDVLYnLF 893 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT-------------KTQKVLFTLF 893 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-------------cHHHHHHHHH
Confidence 4322 12333343321 246999999999963 1234455555
Q ss_pred hhhcCcccCCCCceEEEEecCC---CCCCCccccCCCccce-EEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNH---KERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ 410 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~---~~~Ld~aLlrpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~ 410 (474)
+... ..+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++..+... ...+.+++-.++.
T Consensus 894 R~~~----~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIA 965 (1164)
T PTZ00112 894 DWPT----KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCA 965 (1164)
T ss_pred HHhh----ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHH
Confidence 5432 12346888899885 5678888887 6654 48899999999999999987642 1112222222211
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 011935 411 STDVTPAEVAEELMKADDADVALEGLVNFLKR 442 (474)
Q Consensus 411 ~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 442 (474)
+ ......+|++.||+.+..+++.
T Consensus 966 r---------kVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 966 R---------KVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred H---------hhhhcCCHHHHHHHHHHHHHhh
Confidence 0 0112357899999888888764
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=1.6e-13 Score=154.67 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=112.6
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDL 277 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l 277 (474)
...++.++|.++..+.+++.+.. ..+++++|+||||||||++|+++|..+ +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688999999999998886552 235789999999999999999999987 4789999
Q ss_pred ecccccC--------hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCc
Q 011935 278 ELTSIYS--------NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDE 347 (474)
Q Consensus 278 ~~~~~~~--------~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~ 347 (474)
+++.+.. +..++.++..+. .++||||||||.+++.....+ ... ..+-|...+.. ++
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-----~~~---~a~lLkp~l~r------g~ 307 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-----AID---AANILKPALAR------GE 307 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-----ccc---HHHHhHHHHhC------CC
Confidence 9876541 357788887654 478999999999976322111 111 11222233321 45
Q ss_pred eEEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 348 RIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 348 ~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
+.+|++|+..+ ..||+|.+ ||. .|.++.|+.++...|++...
T Consensus 308 l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 308 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 77888887653 47899999 996 58999999999888877543
No 112
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.4e-13 Score=141.05 Aligned_cols=171 Identities=16% Similarity=0.228 Sum_probs=123.5
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc------ChhHHHHHHHhhc--CCcEEEEecccccccccccC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQ 316 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~ 316 (474)
....+||+|+||||||++++++|+++|.+++.++|.++. .+.++...|..+. +|+|||+-++|.+.- ++.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~d 507 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQD 507 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--cCC
Confidence 345689999999999999999999999999999999886 3577888888775 799999999998863 222
Q ss_pred CCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC
Q 011935 317 NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG 396 (474)
Q Consensus 317 ~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 396 (474)
+ +........+..++. +|-.. ......++|+||+..+.+++.+.+ -|-..|.+|.|+.++|.++++.|+....
T Consensus 508 g---ged~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 508 G---GEDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred C---chhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 1 112222333444443 22222 223568999999999999999998 8889999999999999999999986431
Q ss_pred CCCCcHHHHHhhhcC-CCCCHHHHHHHHhccC
Q 011935 397 KSHSLFGEIEGLIQS-TDVTPAEVAEELMKAD 427 (474)
Q Consensus 397 ~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~~~ 427 (474)
.......+.++.. ..++++++. .++.+.
T Consensus 581 --~n~~v~~k~~a~~t~gfs~~~L~-~l~~~~ 609 (953)
T KOG0736|consen 581 --LNQDVNLKQLARKTSGFSFGDLE-ALVAHS 609 (953)
T ss_pred --cchHHHHHHHHHhcCCCCHHHHH-HHhcCc
Confidence 1111222344443 348888874 444333
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=2.8e-12 Score=133.13 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=107.9
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccccC
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIYS 284 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~ 284 (474)
..+.++|.++..++|...+...+.. ..+.++++|||||||||++++.+++.+ +..++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3467889999988888877654431 224578999999999999999999887 56788888765432
Q ss_pred h-----------------------hHHHHHH----HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhh
Q 011935 285 N-----------------------SDLRRIL----LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFI 337 (474)
Q Consensus 285 ~-----------------------~~l~~l~----~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~i 337 (474)
. ..+...+ .....+.||+|||+|.+.. ......+..|+..+
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~------------~~~~~~l~~l~~~~ 166 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE------------KEGNDVLYSLLRAH 166 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc------------cCCchHHHHHHHhh
Confidence 1 1111111 1112357999999998852 01123466666655
Q ss_pred cCcccCCCCceEEEEecCCC---CCCCccccCCCcc-ceEEEeCCCCHHHHHHHHHHhhc
Q 011935 338 DGLWSSCGDERIIVFTTNHK---ERIDPALLRPGRM-DVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 338 dg~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRf-d~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
+... +.++.+|+++|.. +.+++.+.+ |+ ...|.|++++.++..++++..+.
T Consensus 167 ~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 167 EEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 5432 2357788888865 457777765 55 35789999999999999998874
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=141.18 Aligned_cols=154 Identities=18% Similarity=0.310 Sum_probs=114.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++.+++.|...+..- ....++|||||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 457899999999999998887765521 12457999999999999999999999864
Q ss_pred --------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhh
Q 011935 273 --------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSG 332 (474)
Q Consensus 273 --------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~ 332 (474)
+++.++......-+.+++++..+. ..-|+||||+|.+. ....+.
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------------~~a~na 140 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------------TAAFNA 140 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------------HHHHHH
Confidence 344444433234467777775543 34699999999883 234678
Q ss_pred HHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 333 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 333 LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
||..++.- ....++|++|++++.+.+++++ |+ ..++|+.++.++....+.....
T Consensus 141 LLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 141 LLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred HHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 88888852 3457888888889999999988 87 5689999988887666655443
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.45 E-value=3.9e-12 Score=127.96 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=109.5
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----Cc
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FD 273 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~ 273 (474)
.|. ....|.+|++++|.+++++.+...+.. +. ..+++||||||||||++++++++++. ..
T Consensus 6 ~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWV--EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccc--hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 464 367889999999999998887765531 11 23589999999999999999999873 33
Q ss_pred EEEEecccccChhHHHHHHHh----h----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 274 IYDLELTSIYSNSDLRRILLS----T----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 274 ~~~l~~~~~~~~~~l~~l~~~----~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
++.++.++......++..+.. . ..+.+|+|||+|.+.. .....|+..++...
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------------~~~~~L~~~le~~~---- 130 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------------DAQQALRRTMEMYS---- 130 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------------HHHHHHHHHHhcCC----
Confidence 455544443322223222211 1 1245999999998732 12345555555432
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
....+|+++|.+..+.+++.+ |+. .++|+.++.++...++..++...
T Consensus 131 ~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 131 QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 235677788888888888888 775 58999999999988888887654
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.9e-12 Score=140.89 Aligned_cols=155 Identities=17% Similarity=0.296 Sum_probs=113.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++|+|++.+++.|...+.. ...+..||||||||+|||++++++|+.++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45789999999999999988665542 123456899999999999999999998742
Q ss_pred -------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhH
Q 011935 273 -------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGI 333 (474)
Q Consensus 273 -------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~L 333 (474)
+++.++.......+.++.+..... ...|+||||+|.+. ...++.|
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------------~~a~naL 140 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------------TAAFNAL 140 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------------HHHHHHH
Confidence 234445433334456666654322 35699999999873 2346778
Q ss_pred HhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 334 LNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 334 L~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|..++.. ....++|++|+..+.+.+.+.+ |+. .++|+.++..+....+......
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHH
Confidence 8888753 2457777888888888888887 774 6899999999888777776544
No 117
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.6e-12 Score=139.87 Aligned_cols=156 Identities=20% Similarity=0.346 Sum_probs=119.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------------- 271 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------------- 271 (474)
...|.+|++|+|++.+++.+...+.. ...+..||||||+|+|||++|+++|+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 46789999999999999988776651 13466799999999999999999999874
Q ss_pred ------------CcEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhH
Q 011935 272 ------------FDIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGI 333 (474)
Q Consensus 272 ------------~~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~L 333 (474)
.+++.++..+..+...++.++..+. ..-|++|||+|.+. ....+.|
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------------~~a~naL 141 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------------QAAFNAF 141 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------------HHHHHHH
Confidence 3566666654444567777775543 34599999999883 2346778
Q ss_pred HhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 334 LNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 334 L~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+..|+.. +...++|++|+.+..+-++|++ |+. .++|+.++.++....+...+...
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHc
Confidence 8888753 3457788888888999999998 874 68999999999888887665443
No 118
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.44 E-value=1.7e-12 Score=143.23 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=106.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
...|.+|++++|++.+.... ..+...+.. ....+++||||||||||++|+++|+.++.+++.+++... .
T Consensus 21 k~RP~tldd~vGQe~ii~~~-~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~ 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEG-RLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-G 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhh-HHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-h
Confidence 45699999999999887531 112222221 112478999999999999999999999999888887643 2
Q ss_pred hhHHHHHHHhh-------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC--
Q 011935 285 NSDLRRILLST-------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-- 355 (474)
Q Consensus 285 ~~~l~~l~~~~-------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-- 355 (474)
...++..+..+ ....+|||||||.+.. .....|+..++. ..+++|++|+
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------------~qQdaLL~~lE~------g~IiLI~aTTen 147 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------------AQQDALLPWVEN------GTITLIGATTEN 147 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------------HHHHHHHHHhcC------ceEEEEEecCCC
Confidence 23344443322 2467999999998732 123445655543 3356666443
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
....+++++++ |+ ..+.|+.++.+++..+++.++.
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 33578999998 75 4689999999999999998875
No 119
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4e-12 Score=130.20 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=145.3
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc-----EEEEecccccChhH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD-----IYDLELTSIYSNSD 287 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~-----~~~l~~~~~~~~~~ 287 (474)
.+.+.+++.+++...+..++.+. .|.++++|||||||||..++-+++++.-. ++.+||....+...
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 38889999999988877666432 34569999999999999999999988544 88899888764322
Q ss_pred H-------------------------HHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc
Q 011935 288 L-------------------------RRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS 342 (474)
Q Consensus 288 l-------------------------~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~ 342 (474)
+ .+.+.......||++||+|.+.... ...|-.|+...+..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-------------~~~LY~L~r~~~~~-- 153 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-------------GEVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-------------chHHHHHHhhcccc--
Confidence 1 1112222345799999999997511 14455555554433
Q ss_pred CCCCceEEEEecCCC---CCCCccccCCCccc-eEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHH
Q 011935 343 SCGDERIIVFTTNHK---ERIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE 418 (474)
Q Consensus 343 ~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~ 418 (474)
...+.+|+.+|.. +.+||.+.+ ++. .+|.||+++.+|...|+..............+.+-.++.
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia-------- 221 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA-------- 221 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHH--------
Confidence 3457888888865 578888875 433 468999999999999999987654223333333322221
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 011935 419 VAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEV 463 (474)
Q Consensus 419 i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 463 (474)
+-....++|++.|+.-+..+.+.+..+......+.....+..++
T Consensus 222 -~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 222 -ALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred -HHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 11112455999999999999888887776666655555554443
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.44 E-value=2.1e-12 Score=134.82 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=100.9
Q ss_pred cCCCCCCcc-cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011935 205 LEHPSTFDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLE 278 (474)
Q Consensus 205 ~~~~~~f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~ 278 (474)
+.+..+|++ ++|..... ....+..+...+ | ....+++||||||||||+|++++|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n~~--a~~~~~~~~~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRL--AHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcHHH--HHHHHHHHHhCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455668999 45644321 223333332221 2 123468999999999999999999987 56777887
Q ss_pred cccccCh-------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 279 LTSIYSN-------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 279 ~~~~~~~-------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
+.++... ..+........+..+|+|||||.+.+. ...+..+..+++.+ ... +..+||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-----------~~~~~~l~~~~n~~---~~~--~~~iii 237 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-----------ERTQEEFFHTFNAL---HEN--GKQIVL 237 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC-----------HHHHHHHHHHHHHH---HHC--CCCEEE
Confidence 7654311 111122222345679999999987431 11122333344333 222 223444
Q ss_pred EecCCCC---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTNHKE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN~~~---~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++..|. .+++.+.+ ||. ..++++.|+.++|..+++......
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 4444454 46688888 886 589999999999999999988764
No 121
>PRK08727 hypothetical protein; Validated
Probab=99.43 E-value=4e-12 Score=122.85 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=102.8
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+......+|++.++.+.- ....+..... | .+...++||||+|||||+|++|+|+++ +..+..+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 344566689998765542 1121211111 1 133569999999999999999998775 555566665
Q ss_pred ccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC-CCC
Q 011935 280 TSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKE 358 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-~~~ 358 (474)
.+.. ..+...+....+..+|+|||++.+.. .......+..+++.+.. .+.-+|+|+| .|.
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~-----------~~~~~~~lf~l~n~~~~------~~~~vI~ts~~~p~ 138 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG-----------QREDEVALFDFHNRARA------AGITLLYTARQMPD 138 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC-----------ChHHHHHHHHHHHHHHH------cCCeEEEECCCChh
Confidence 5432 34455666666778999999998753 11223344455555422 1233556555 555
Q ss_pred CC---CccccCCCcc--ceEEEeCCCCHHHHHHHHHHhhc
Q 011935 359 RI---DPALLRPGRM--DVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 359 ~L---d~aLlrpGRf--d~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.+ +|+|.+ || ...+.++.|+.+++.++++....
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 44 789998 86 57899999999999999998643
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.42 E-value=4.3e-12 Score=121.93 Aligned_cols=155 Identities=14% Similarity=0.205 Sum_probs=97.1
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++...|.+||++++... +.+...+..+.. +....++++|+||||||||+|++++++++ +..++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34566778999773322 122233333221 23345789999999999999999999876 567777777
Q ss_pred ccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC--
Q 011935 280 TSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-- 357 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-- 357 (474)
..... .+.......+|+|||+|.+.. ..+..+..+++.+.. . ...++|+|++.+
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~~-------------~~~~~L~~~~~~~~~---~--~~~~vl~~~~~~~~ 134 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLDD-------------AQQIALFNLFNRVRA---H--GQGALLVAGPAAPL 134 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcCc-------------hHHHHHHHHHHHHHH---c--CCcEEEEeCCCCHH
Confidence 66531 122334567999999998721 223334444444321 1 223455565543
Q ss_pred -CCCCccccCCCcc--ceEEEeCCCCHHHHHHHHHHhhc
Q 011935 358 -ERIDPALLRPGRM--DVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 358 -~~Ld~aLlrpGRf--d~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..+.+.|.. || ...|++|.|+.++...++..+..
T Consensus 135 ~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 135 ALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred hCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 235567776 76 47999999999888777776543
No 123
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.42 E-value=1.1e-12 Score=129.58 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=103.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc---EEEEecccc
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD---IYDLELTSI 282 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~---~~~l~~~~~ 282 (474)
..|.++++.+|++.+..+ ...+...+.. ..-.+++||||||||||+||+.||+...-+ ++.++.+.-
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 468889999888776554 2223322221 123579999999999999999999987665 555554443
Q ss_pred cChhHHHHHHHhhc-------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEE-ec
Q 011935 283 YSNSDLRRILLSTT-------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVF-TT 354 (474)
Q Consensus 283 ~~~~~l~~l~~~~~-------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~-tT 354 (474)
...+++.+|.++. .+.|||||||+++.. .....||-.++. +.+++|+ ||
T Consensus 202 -~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----------------sQQD~fLP~VE~------G~I~lIGATT 258 (554)
T KOG2028|consen 202 -KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----------------SQQDTFLPHVEN------GDITLIGATT 258 (554)
T ss_pred -chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----------------hhhhcccceecc------CceEEEeccc
Confidence 4577888887763 578999999998832 112334444432 3466666 45
Q ss_pred CCC-CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 355 NHK-ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 355 N~~-~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
.+| -.|..||+. |+. ++-+.....+....|+.+-.
T Consensus 259 ENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred CCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 455 689999999 885 45577778888888887744
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=2.6e-12 Score=143.31 Aligned_cols=198 Identities=15% Similarity=0.251 Sum_probs=129.0
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhH-
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSD- 287 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~- 287 (474)
.|+|+++.++.|.+.+... +.|.. +...+||+||||||||++|+++|..++.+++.++++.+.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 5778888888877665532 23332 2234899999999999999999999999999999887643211
Q ss_pred ------------------HHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCCC--
Q 011935 288 ------------------LRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSCG-- 345 (474)
Q Consensus 288 ------------------l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~~-- 345 (474)
+.+.+. ....+||+|||||.+-+ ...+.|+..+|.-. ...|
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~----------------~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP----------------DIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH----------------HHHHHHHHhhccCeeecCCCcc
Confidence 222222 23568999999998732 34566777776421 1111
Q ss_pred ---CceEEEEecCCCC-------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC
Q 011935 346 ---DERIIVFTTNHKE-------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK 397 (474)
Q Consensus 346 ---~~~iiI~tTN~~~-------------------------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 397 (474)
.+.+||+|||... .+.|.|+. |||..|.|.+.+.++..+|++..+...
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l-- 665 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDEL-- 665 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHH--
Confidence 3468999998631 24667776 999999999999999999999987532
Q ss_pred CCCcHHHHHhhhcCCCCCHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH
Q 011935 398 SHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNFLKRKR 444 (474)
Q Consensus 398 ~~~l~~~i~~l~~~~~~tpa~i~~~l~~-~~~~~~al~~l~~~l~~~~ 444 (474)
...+...--...+++.-+ +++.. ..+++...+.+.++++..-
T Consensus 666 ----~~~l~~~~~~l~i~~~a~-~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 666 ----SKQLNEKNIKLELTDDAK-KYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred ----HHHHHhCCCeEEeCHHHH-HHHHHhCCCcccCchHHHHHHHHHh
Confidence 111111101234565443 44443 3466666666666666543
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=3.2e-12 Score=135.14 Aligned_cols=166 Identities=14% Similarity=0.256 Sum_probs=102.3
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLE 278 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~ 278 (474)
.+.+..+|++.+..+.-.. ....+..+...+ |.. ..+++||||||||||+|++++|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556678999553333222 223333332221 222 2569999999999999999999987 55677787
Q ss_pred cccccCh-------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 279 LTSIYSN-------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 279 ~~~~~~~-------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
+.++... ...........+..+|+|||||.+.+. ...+ ..|+..++.+... +..+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-----------~~~~---~~l~~~~n~l~~~--~~~iii 249 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK-----------ERTQ---EEFFHTFNALHEA--GKQIVL 249 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC-----------HHHH---HHHHHHHHHHHHC--CCcEEE
Confidence 7665311 111122233346789999999988431 1112 2334433333322 223444
Q ss_pred EecCCCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN~~~~---Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++..|.. ++++|.. ||. ..++++.|+.+++..+++......
T Consensus 250 ts~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 250 TSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred ECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 44445544 6788888 996 589999999999999999987653
No 126
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.38 E-value=7.3e-12 Score=128.28 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=51.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.|+|+++.|+.+...+....++...-..... -.+.++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 3889999999997776543222111001111 1257899999999999999999999999999999876443
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=9.5e-12 Score=120.36 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=96.1
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELT 280 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~ 280 (474)
...+..+||+.+-... +.....+..+... +..++++||||||||||+|++++|+++. ..+..+++.
T Consensus 14 ~~~~~~~fd~f~~~~n--~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 14 YLPDDETFASFYPGDN--DSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCCcCCccccccCcc--HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 3456668998772211 1233334433211 1235799999999999999999998764 345555544
Q ss_pred cccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC-
Q 011935 281 SIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER- 359 (474)
Q Consensus 281 ~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~- 359 (474)
.... ...+++....+-.+|+||||+.+.. .......+..+++.+-. . +...+++.+++.|..
T Consensus 83 ~~~~--~~~~~~~~~~~~dlliiDdi~~~~~-----------~~~~~~~lf~l~n~~~e---~-g~~~li~ts~~~p~~l 145 (235)
T PRK08084 83 KRAW--FVPEVLEGMEQLSLVCIDNIECIAG-----------DELWEMAIFDLYNRILE---S-GRTRLLITGDRPPRQL 145 (235)
T ss_pred HHhh--hhHHHHHHhhhCCEEEEeChhhhcC-----------CHHHHHHHHHHHHHHHH---c-CCCeEEEeCCCChHHc
Confidence 3221 1122222223346899999998743 12223445555554321 1 122344444555544
Q ss_pred --CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhh
Q 011935 360 --IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 360 --Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l 392 (474)
+.|.|++ |+. ..++++.|+.+++.++++...
T Consensus 146 ~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 146 NLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred CcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 5789998 886 789999999999999987644
No 128
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=3.8e-11 Score=123.07 Aligned_cols=153 Identities=15% Similarity=0.242 Sum_probs=112.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
..+|+++++|+|++.+++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-.
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999999988775552 134568999999999999999999997721
Q ss_pred ----------------------cEEEEecc--cc-------cChhHHHHHHHhhc------CCcEEEEeccccccccccc
Q 011935 273 ----------------------DIYDLELT--SI-------YSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDR 315 (474)
Q Consensus 273 ----------------------~~~~l~~~--~~-------~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~ 315 (474)
+++.+... +. ..-+.++.+..... .+-|++|||+|.+-
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~----- 154 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN----- 154 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-----
Confidence 12222210 10 12244555544332 46799999999872
Q ss_pred CCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 316 QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 316 ~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
....+.||..++.. ....++|++|+.++.+.|.+++ |+ ..|.|+.|+.++...++....
T Consensus 155 -----------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 -----------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -----------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 34567788877653 3457888899999999999988 88 588999999999888887754
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=1.7e-11 Score=133.74 Aligned_cols=157 Identities=18% Similarity=0.298 Sum_probs=104.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
..|.+|++++|.+...+.+...+. .+.+.+++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 458899999999998887755432 1235679999999999999999998765 34688
Q ss_pred EEecccccC-hhHH----------------HHHHHh------------hcCCcEEEEecccccccccccCCCCCCCCCch
Q 011935 276 DLELTSIYS-NSDL----------------RRILLS------------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNT 326 (474)
Q Consensus 276 ~l~~~~~~~-~~~l----------------~~l~~~------------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~ 326 (474)
.+++..+.. ...+ ++.+.. ....++|||||++.+-. ..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~ 281 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LL 281 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-------------HH
Confidence 888876531 1111 011111 12457999999998732 12
Q ss_pred hhHHhhHHhhhcCc--------c----------------cCCCCceEEEE-ecCCCCCCCccccCCCccceEEEeCCCCH
Q 011935 327 KLTLSGILNFIDGL--------W----------------SSCGDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTV 381 (474)
Q Consensus 327 ~~~l~~LL~~idg~--------~----------------~~~~~~~iiI~-tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~ 381 (474)
+ ..|+..++.- + ......+++|+ ||+.++.++++|++ ||. .+.|+.++.
T Consensus 282 Q---~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ 355 (615)
T TIGR02903 282 Q---NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTP 355 (615)
T ss_pred H---HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCH
Confidence 2 2333333210 0 01112344444 66778899999998 996 578999999
Q ss_pred HHHHHHHHHhhcc
Q 011935 382 HGFKVLASNYLGI 394 (474)
Q Consensus 382 ~~~~~l~~~~l~~ 394 (474)
++...|+++++..
T Consensus 356 edi~~Il~~~a~~ 368 (615)
T TIGR02903 356 EDIALIVLNAAEK 368 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=1.4e-11 Score=124.57 Aligned_cols=156 Identities=22% Similarity=0.275 Sum_probs=102.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------CcE--EEE
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-------FDI--YDL 277 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-------~~~--~~l 277 (474)
.|..|++|+|++++++.+.-.+.. +...++||+||||||||++++++|+-+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467799999999999877543221 1125799999999999999999999882 211 100
Q ss_pred e----cc-----c-------------------ccChhHHHHHHHh-----------hcCCcEEEEecccccccccccCCC
Q 011935 278 E----LT-----S-------------------IYSNSDLRRILLS-----------TTNRSILVIEDVDCSVEMKDRQND 318 (474)
Q Consensus 278 ~----~~-----~-------------------~~~~~~l~~l~~~-----------~~~~sIl~iDeiD~l~~~~~~~~~ 318 (474)
. +. . +...-.+...+.. ..+.++|++|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 0 00 0 0011111111111 1235799999999873
Q ss_pred CCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCCC-CCCccccCCCccceEEEeCCCCH-HHHHHH
Q 011935 319 GASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HGFKVL 387 (474)
Q Consensus 319 ~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~~-~Ld~aLlrpGRfd~~I~~~~p~~-~~~~~l 387 (474)
..+.+.|++.|+. .....+..+++|+|+|..+ .++++|+. ||...|.+++|.. +++.++
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 3455667766642 1112234567888888654 68999999 9999999999987 788899
Q ss_pred HHHhhc
Q 011935 388 ASNYLG 393 (474)
Q Consensus 388 ~~~~l~ 393 (474)
+.....
T Consensus 212 l~~~~~ 217 (334)
T PRK13407 212 IRRRDA 217 (334)
T ss_pred HHHhhc
Confidence 987643
No 131
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.34 E-value=1.3e-11 Score=108.11 Aligned_cols=116 Identities=26% Similarity=0.388 Sum_probs=80.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHHH-----------HHHhhcCCcEEEEecccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLRR-----------ILLSTTNRSILVIEDVDCSV 310 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~-----------l~~~~~~~sIl~iDeiD~l~ 310 (474)
..++++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35689999999999999999999998 88999998887654322221 11223467999999999762
Q ss_pred cccccCCCCCCCCCchhhHHhhHHhhhcCcccC--CCCceEEEEecCCCC--CCCccccCCCccceEEEeCC
Q 011935 311 EMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS--CGDERIIVFTTNHKE--RIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~--~~~~~iiI~tTN~~~--~Ld~aLlrpGRfd~~I~~~~ 378 (474)
. .....++..+...... ...+..+|+++|... .+++.+.. ||+.+|.+++
T Consensus 98 ~----------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R----------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H----------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 1123344444333211 124577888888776 77888887 9998888873
No 132
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.34 E-value=8e-12 Score=127.94 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=52.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
-|+|+++.|+.+.-.+.....+...-..++ -..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 478999999999777665433221111111 1245899999999999999999999999999999997644
No 133
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=2.9e-12 Score=128.02 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=92.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHH------------------HHHh-hcCCcEEEEecc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRR------------------ILLS-TTNRSILVIEDV 306 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~------------------l~~~-~~~~sIl~iDei 306 (474)
.+++||.||||||||++++.+|..++.+++.+++.......++.. .+.. ...+.+|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 578999999999999999999999999999998876553322111 0111 235678999999
Q ss_pred cccccccccCCCCCCCCCchhhHHhhHHhh-----hcCc--ccCCCCceEEEEecCCCC------------CCCccccCC
Q 011935 307 DCSVEMKDRQNDGASVGSNTKLTLSGILNF-----IDGL--WSSCGDERIIVFTTNHKE------------RIDPALLRP 367 (474)
Q Consensus 307 D~l~~~~~~~~~~~~~~~~~~~~l~~LL~~-----idg~--~~~~~~~~iiI~tTN~~~------------~Ld~aLlrp 367 (474)
|..- ......++.+|.. +++. .-.+.....+|+|+|..+ .+++|++.
T Consensus 144 n~a~-------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 144 DAGR-------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hccC-------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9773 2223344445542 1110 001123467899999765 46889999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHhh
Q 011935 368 GRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 368 GRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
||-+.+.++||+.+.-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998889999999999888887654
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.34 E-value=1.1e-11 Score=130.40 Aligned_cols=155 Identities=17% Similarity=0.333 Sum_probs=121.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD------------ 273 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~------------ 273 (474)
..|.+|++++|++.+.+.|...+..- ....+|||.||.|||||++||.+|..+++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 46889999999999999998876622 234689999999999999999999987542
Q ss_pred ------------EEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 274 ------------IYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 274 ------------~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
++.+|..+-.+-+++|.+..... +.-|.+|||+|.+. ....+.||.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------------~~afNALLK 141 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------------KQAFNALLK 141 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------------HHHHHHHhc
Confidence 33333333334577888877753 34599999999883 456788888
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++. ++.++++|++|..+.++++.+++ |+. +..|...+.++....+...+...
T Consensus 142 TLEE----PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E 194 (515)
T COG2812 142 TLEE----PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKE 194 (515)
T ss_pred cccc----CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhc
Confidence 8764 56789999999999999999998 884 67899999999888888887654
No 135
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=129.91 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=88.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccccCh-------hHHHHHHHhhcCCcEEEEecccccccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIYSN-------SDLRRILLSTTNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~~-------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~ 314 (474)
..++|||++|||||+|++|||+++ +..++.+++.++... ..+........+..+|+||||+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g--- 391 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED--- 391 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC---
Confidence 458999999999999999999987 467778877665311 11111112234578999999998853
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC----CCCCccccCCCcc--ceEEEeCCCCHHHHHHHH
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK----ERIDPALLRPGRM--DVHINMSYCTVHGFKVLA 388 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~----~~Ld~aLlrpGRf--d~~I~~~~p~~~~~~~l~ 388 (474)
....+..+..++|.+- .. +.-||+|+|.+ ..+++.|.+ || ...+++..|+.+.|.+|+
T Consensus 392 --------ke~tqeeLF~l~N~l~---e~---gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 392 --------KESTQEEFFHTFNTLH---NA---NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred --------CHHHHHHHHHHHHHHH---hc---CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHH
Confidence 1112333444555443 22 13355577754 357889998 88 467799999999999999
Q ss_pred HHhhccc
Q 011935 389 SNYLGIK 395 (474)
Q Consensus 389 ~~~l~~~ 395 (474)
+......
T Consensus 456 ~kka~~r 462 (617)
T PRK14086 456 RKKAVQE 462 (617)
T ss_pred HHHHHhc
Confidence 9887655
No 136
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=9.6e-11 Score=118.18 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=109.4
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC--------cEEEEecc-
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF--------DIYDLELT- 280 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~--------~~~~l~~~- 280 (474)
+|++|+|++.+++.+...+. ....+..|||+||+|+|||++|+++|+.+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 58999999999998877653 1234668999999999999999999997622 34344331
Q ss_pred -cccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 281 -SIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 281 -~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
.....+.++.+..... +.-|++||++|.+. ....+.||..++. ++.+.++|++
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~----------------~~a~naLLK~LEe----pp~~t~~il~ 129 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT----------------EQAQNAFLKTIEE----PPKGVFIILL 129 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC----------------HHHHHHHHHHhcC----CCCCeEEEEE
Confidence 1123456777765432 34699999999873 2345788888875 3355777788
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 354 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 354 TN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
|++++.+.|+++. |+ ..++|+.|+.++....+...+
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8889999999998 88 589999999999877776554
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.32 E-value=4e-11 Score=135.51 Aligned_cols=200 Identities=15% Similarity=0.250 Sum_probs=129.5
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CC-ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY 283 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~ 283 (474)
+..|+|++...+.|...+..... |.. .| ..+||+||||||||++|++||+.+ +.+++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 56789999999999888775421 211 12 358999999999999999999987 4568888888765
Q ss_pred ChhHHHHHH---------------Hh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cC
Q 011935 284 SNSDLRRIL---------------LS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SS 343 (474)
Q Consensus 284 ~~~~l~~l~---------------~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~ 343 (474)
.......++ .. ....+||+||||+.+- ....+.|++.++.-. ..
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------------~~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------------PDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC----------------HHHHHHHHHHHhhCceecC
Confidence 332222222 11 1234899999999773 234566666665211 11
Q ss_pred C-----CCceEEEEecCCC-------------------------CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 344 C-----GDERIIVFTTNHK-------------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 344 ~-----~~~~iiI~tTN~~-------------------------~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
. -.+.+||+|||.. ..+.|+|+. |+|..|.|.+++.+....|+..++.
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 1 1235789999962 234578888 9999999999999999999999885
Q ss_pred ccCCCCCcHHHHHhhhcCCCCCHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Q 011935 394 IKGKSHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNFLKRK 443 (474)
Q Consensus 394 ~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~-~~~~~~al~~l~~~l~~~ 443 (474)
.. ...+++.-....+++.-+ +.+.. ..+++...+.+.++++..
T Consensus 781 ~l------~~rl~~~gi~l~is~~al-~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 781 RL------YKRLEERGYEIHISDEAL-KLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HH------HHHHHhCCCcCcCCHHHH-HHHHHcCCCccCChHHHHHHHHHH
Confidence 32 111111111234565544 44543 446665666666666554
No 138
>PRK05642 DNA replication initiation factor; Validated
Probab=99.32 E-value=6.4e-11 Score=114.50 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=99.3
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC-CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
+...+..+||+.+... .......+..+.... ..| .++++||||+|||||+|++|+|+++ +..++.++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 3455667899877322 233334444332211 122 3678999999999999999999865 56777777
Q ss_pred cccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 279 LTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 279 ~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
..++... ...++....+..+|+|||++.+.+ ....+..+-.++|.+- .. +..+|+.++..|.
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~-----------~~~~~~~Lf~l~n~~~---~~--g~~ilits~~~p~ 142 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAG-----------KADWEEALFHLFNRLR---DS--GRRLLLAASKSPR 142 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcC-----------ChHHHHHHHHHHHHHH---hc--CCEEEEeCCCCHH
Confidence 7665422 122333333446899999997743 1122334555555432 22 2345544444453
Q ss_pred C---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhh
Q 011935 359 R---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 359 ~---Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l 392 (474)
. +.|.|++ ||. ..+.+..|+.+++..+++...
T Consensus 143 ~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 143 ELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 3 3688988 884 678899999999999998543
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=3.3e-11 Score=126.79 Aligned_cols=164 Identities=17% Similarity=0.298 Sum_probs=98.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLEL 279 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~ 279 (474)
+.+..+||+.+..+.-.. ....+..+...+ | +..+++||||||||||+|++++|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 456668999773333222 222333332221 2 23469999999999999999999986 456777776
Q ss_pred ccccCh-------hHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 280 TSIYSN-------SDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 280 ~~~~~~-------~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
.++... ..+........ ++.+|+|||++.+.+. ...+..+..+++.+ ... +..+||
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~-----------~~~q~elf~~~n~l---~~~--~k~iIi 232 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK-----------TGVQTELFHTFNEL---HDS--GKQIVI 232 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc-----------HHHHHHHHHHHHHH---HHc--CCeEEE
Confidence 654311 11112122222 5789999999987541 11122233333333 222 223444
Q ss_pred EecCCCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN~~~~---Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.+.+.|.. +++.+.+ ||. ..+.++.|+.+.|..|++......
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 44455544 5577887 774 578999999999999999987654
No 140
>PHA02244 ATPase-like protein
Probab=99.31 E-value=1.7e-11 Score=123.84 Aligned_cols=141 Identities=17% Similarity=0.297 Sum_probs=89.8
Q ss_pred cChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc----cc----ChhH
Q 011935 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS----IY----SNSD 287 (474)
Q Consensus 216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~----~~----~~~~ 287 (474)
+...........+..++.. +.++||+||||||||++|++||..++.+++.++... +. ....
T Consensus 100 g~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~ 168 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGK 168 (383)
T ss_pred CCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccc
Confidence 4444455555555555432 357999999999999999999999999999887321 00 0001
Q ss_pred HH--HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh-----hhcCcccCCCCceEEEEecCCC---
Q 011935 288 LR--RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN-----FIDGLWSSCGDERIIVFTTNHK--- 357 (474)
Q Consensus 288 l~--~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~-----~idg~~~~~~~~~iiI~tTN~~--- 357 (474)
+. .++....+.++|+||||+.+.+ .....|+.++. ..++.. ....+..+|+|+|.+
T Consensus 169 ~~dgpLl~A~~~GgvLiLDEId~a~p-------------~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G 234 (383)
T PHA02244 169 FHETPFYEAFKKGGLFFIDEIDASIP-------------EALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKG 234 (383)
T ss_pred ccchHHHHHhhcCCEEEEeCcCcCCH-------------HHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccC
Confidence 11 2233345789999999997732 12223333332 111111 112456788999973
Q ss_pred --------CCCCccccCCCccceEEEeCCCCHHHH
Q 011935 358 --------ERIDPALLRPGRMDVHINMSYCTVHGF 384 (474)
Q Consensus 358 --------~~Ld~aLlrpGRfd~~I~~~~p~~~~~ 384 (474)
..|++|++. || .+|+|++|+..+.
T Consensus 235 ~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 235 ADHIYVARNKIDGATLD--RF-APIEFDYDEKIEH 266 (383)
T ss_pred cccccCCCcccCHHHHh--hc-EEeeCCCCcHHHH
Confidence 578999999 99 5899999985443
No 141
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=9.7e-11 Score=119.51 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=108.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc------------
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD------------ 273 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~------------ 273 (474)
.||+.|+.|+|++++++.+...+.. ...+..+||+||+|+|||++|+++|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 6899999999999999988775541 1235579999999999999999999987441
Q ss_pred ------------------EEEEecc--c-------ccChhHHHHHHHh---hc---CCcEEEEecccccccccccCCCCC
Q 011935 274 ------------------IYDLELT--S-------IYSNSDLRRILLS---TT---NRSILVIEDVDCSVEMKDRQNDGA 320 (474)
Q Consensus 274 ------------------~~~l~~~--~-------~~~~~~l~~l~~~---~~---~~sIl~iDeiD~l~~~~~~~~~~~ 320 (474)
++.+... . ...-+.++.+... .+ ..-|++|||+|.+.
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1111100 0 0012344444322 21 34699999999883
Q ss_pred CCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHh
Q 011935 321 SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 321 ~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~ 391 (474)
....+.||..++.. +...++|+.|+.++.+.|.++. |+ ..+.|+.|+.++...++...
T Consensus 155 ------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 155 ------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 23456788888753 2446777778889999999988 98 69999999999999888873
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=3.4e-11 Score=126.57 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=87.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh-------hHHHHHHHh-hcCCcEEEEeccccccccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN-------SDLRRILLS-TTNRSILVIEDVDCSVEMKDR 315 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~-------~~l~~l~~~-~~~~sIl~iDeiD~l~~~~~~ 315 (474)
.+++||||||+|||+|++|+|+++ +..++.++...+... .... .|.. ..+..+|+||||+.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~-~f~~~~~~~dvLiIDDiq~l~~---- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQ-RFRQFYRNVDALFIEDIEVFSG---- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHH-HHHHHcccCCEEEEcchhhhcC----
Confidence 579999999999999999999986 577777776544210 1111 1222 24567999999998743
Q ss_pred CCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC-C---CCCCccccCCCccc--eEEEeCCCCHHHHHHHHH
Q 011935 316 QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH-K---ERIDPALLRPGRMD--VHINMSYCTVHGFKVLAS 389 (474)
Q Consensus 316 ~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~-~---~~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~ 389 (474)
....+..+..++|.+- .. +..+|+|+|. | ..++++|.+ ||. ..+.++.|+.+.+..+++
T Consensus 217 -------k~~~qeelf~l~N~l~---~~---~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 217 -------KGATQEEFFHTFNSLH---TE---GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -------ChhhHHHHHHHHHHHH---HC---CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHH
Confidence 1122334445555432 11 2345566654 4 456789998 995 899999999999999999
Q ss_pred Hhhccc
Q 011935 390 NYLGIK 395 (474)
Q Consensus 390 ~~l~~~ 395 (474)
......
T Consensus 282 ~k~~~~ 287 (445)
T PRK12422 282 RKAEAL 287 (445)
T ss_pred HHHHHc
Confidence 887654
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=2.8e-12 Score=113.47 Aligned_cols=105 Identities=27% Similarity=0.416 Sum_probs=73.2
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHH---------------hhcCCcEEEEecccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILL---------------STTNRSILVIEDVDCSVEM 312 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~---------------~~~~~sIl~iDeiD~l~~~ 312 (474)
++||+||||||||++++.+|..++.+++.+.++...+..+|..... ...+++|++||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 4799999999999999999999999999999988766555432211 01246899999999762
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcCcc----------cCCCC-----ceEEEEecCCCC----CCCccccCCCcc
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDGLW----------SSCGD-----ERIIVFTTNHKE----RIDPALLRPGRM 370 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg~~----------~~~~~-----~~iiI~tTN~~~----~Ld~aLlrpGRf 370 (474)
..++..|+..++.-. ..... +..+|+|+|..+ .+++||++ ||
T Consensus 79 --------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234455555554210 00111 378999999888 89999999 87
No 144
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=3e-11 Score=122.70 Aligned_cols=130 Identities=23% Similarity=0.298 Sum_probs=91.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHH--Hh----------hcC---Cc---EEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRIL--LS----------TTN---RS---ILVIEDVD 307 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~--~~----------~~~---~s---Il~iDeiD 307 (474)
.+++||-||||||||++|+++|..++.+++.+.|+.-....++.... .. ... .. |+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 47899999999999999999999999999999998766444332111 10 111 13 99999998
Q ss_pred ccccccccCCCCCCCCCchhhHHhhHHhhhcC-------cc-cCCCCceEEEEecC-----CCCCCCccccCCCccceEE
Q 011935 308 CSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-------LW-SSCGDERIIVFTTN-----HKERIDPALLRPGRMDVHI 374 (474)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-------~~-~~~~~~~iiI~tTN-----~~~~Ld~aLlrpGRfd~~I 374 (474)
... ..+.+.||..|+. .. -.-....++|+|+| ....|++|+++ ||...+
T Consensus 123 ra~----------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 123 RAP----------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred cCC----------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 763 2445666666653 11 11224467888889 44568999999 999999
Q ss_pred EeCCC-CHHHHHHHHHHhhc
Q 011935 375 NMSYC-TVHGFKVLASNYLG 393 (474)
Q Consensus 375 ~~~~p-~~~~~~~l~~~~l~ 393 (474)
.++|| +.++...+......
T Consensus 185 ~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 185 YVDYPDSEEEERIILARVGG 204 (329)
T ss_pred ecCCCCchHHHHHHHHhCcc
Confidence 99999 55555555555443
No 145
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5e-11 Score=130.10 Aligned_cols=201 Identities=16% Similarity=0.241 Sum_probs=138.0
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecccccC
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIYS 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~~ 284 (474)
..|+|+++..+.|.+.+..- +.|+. |..++||.||+|+|||.||+++|..+. -.++.+|++++..
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 46889999999888877743 33432 224688999999999999999999997 7899999999987
Q ss_pred hhHHHHHHHhh------------------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCC
Q 011935 285 NSDLRRILLST------------------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSC 344 (474)
Q Consensus 285 ~~~l~~l~~~~------------------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~ 344 (474)
...+.+++-.- ...|||+||||++.- ...++-||..+|.-. ...
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH----------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH----------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC----------------HHHHHHHHHHhcCCeeecCC
Confidence 66666665221 235899999999773 356788888887432 222
Q ss_pred C-----CceEEEEecCCC----------------------------CCCCccccCCCccceEEEeCCCCHHHHHHHHHHh
Q 011935 345 G-----DERIIVFTTNHK----------------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 345 ~-----~~~iiI~tTN~~----------------------------~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~ 391 (474)
| .+.+||||||-= ..+.|.++. |+|..|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 2 246899999931 013466777 99999999999999999999998
Q ss_pred hcccCCCCCcHHHHHhhhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 011935 392 LGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKR 444 (474)
Q Consensus 392 l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~ 444 (474)
+... ...+.+---...++++-..-..-+..++....+.+.++++..-
T Consensus 705 L~~l------~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 705 LNRL------AKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHH------HHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 8532 1111110001235555443333344566666666666666543
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.27 E-value=8e-11 Score=133.39 Aligned_cols=200 Identities=17% Similarity=0.246 Sum_probs=127.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCC----CCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGK----AWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~----~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
..|+|++...+.+...+.... .|. .|...+||+||||||||++|++||..+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 468999999999988777542 121 123458999999999999999999987 46788888887653
Q ss_pred hhHHHHH---------------HH---hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc--ccCC
Q 011935 285 NSDLRRI---------------LL---STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL--WSSC 344 (474)
Q Consensus 285 ~~~l~~l---------------~~---~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~--~~~~ 344 (474)
......+ +. .....+||+|||||.+- ....+.|+..++.- ....
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------------~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------------PDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------------HHHHHHHHHHHhcCceecCC
Confidence 3322222 11 12345799999999773 23456677766531 1111
Q ss_pred -----CCceEEEEecCCCC-------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 345 -----GDERIIVFTTNHKE-------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 345 -----~~~~iiI~tTN~~~-------------------------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
-.+.+||+|||... .+.|.|+. |+|..|.|.+++.+....|+...+..
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 13468999999721 13466776 99999999999999999999988753
Q ss_pred cCCCCCcHHHHHhhhcCCCCCHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH
Q 011935 395 KGKSHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNFLKRKR 444 (474)
Q Consensus 395 ~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~-~~~~~~al~~l~~~l~~~~ 444 (474)
. ...+...-....+++.-+ +.+.. ..++....+.+.++++..-
T Consensus 779 l------~~~l~~~~~~l~i~~~a~-~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 779 L------RKRLAERKITLELSDAAL-DFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred H------HHHHHHCCCeecCCHHHH-HHHHHhCCCCCCCchhHHHHHHHHH
Confidence 2 111111100134665554 44443 3345555556655555543
No 147
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6e-11 Score=127.04 Aligned_cols=154 Identities=29% Similarity=0.468 Sum_probs=124.0
Q ss_pred HhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc------ChhHHHHHHHhhc--CCcEEEE
Q 011935 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY------SNSDLRRILLSTT--NRSILVI 303 (474)
Q Consensus 232 l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~------~~~~l~~l~~~~~--~~sIl~i 303 (474)
+..++.++..+..++++++++||||||||++++++|++ +.....++..... +...++.+|..+. .|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567888999999999999999999999999999999 5544545544443 3466677776664 5799999
Q ss_pred ecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHH
Q 011935 304 EDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 383 (474)
Q Consensus 304 DeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~ 383 (474)
|++|.+.+.+.. ..........++++..+|++. .+. ++++..||.+..+|+++++||||+..+.++.|+...
T Consensus 83 d~~~~~~~~~~~-----~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 83 DEIDALAPKRSS-----DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred chhhhcccCccc-----cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 999999874433 123455677899999999987 455 888889999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 011935 384 FKVLASNYLGI 394 (474)
Q Consensus 384 ~~~l~~~~l~~ 394 (474)
+.++.......
T Consensus 155 ~~ei~~~~~~~ 165 (494)
T COG0464 155 RLEILQIHTRL 165 (494)
T ss_pred HHHHHHHHHhc
Confidence 88887776543
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=6e-11 Score=133.76 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=108.1
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CCcc-ceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRG-YLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rg-iLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
..|+|+++..+.|.+.+..... |.. .|.| +||+||||||||.+|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~--------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA--------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc--------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 4688999999999888765421 221 2344 7999999999999999999998 45788888877642
Q ss_pred hhH-------------------HHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cC
Q 011935 285 NSD-------------------LRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SS 343 (474)
Q Consensus 285 ~~~-------------------l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~ 343 (474)
... |...+. ..+.+||+|||||.+- ....+.|+..+|.-. ..
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~-~~p~svvllDEieka~----------------~~v~~~Llq~ld~g~l~d~ 700 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVR-RKPYSVVLLDEVEKAH----------------PDVLELFYQVFDKGVMEDG 700 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHH-hCCCcEEEEechhhcC----------------HHHHHHHHHHhhcceeecC
Confidence 211 222222 2457999999999763 234556666665321 11
Q ss_pred CC-----CceEEEEecCCCC-----------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 011935 344 CG-----DERIIVFTTNHKE-----------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLAS 389 (474)
Q Consensus 344 ~~-----~~~iiI~tTN~~~-----------------------------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~ 389 (474)
.| .+.+||+|||... .+.|+|+. |++ .|.|...+.++..+|+.
T Consensus 701 ~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~ 777 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVR 777 (852)
T ss_pred CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHH
Confidence 11 3478999999411 14577777 998 78999999999999999
Q ss_pred Hhhcc
Q 011935 390 NYLGI 394 (474)
Q Consensus 390 ~~l~~ 394 (474)
..+..
T Consensus 778 ~~L~~ 782 (852)
T TIGR03345 778 LKLDR 782 (852)
T ss_pred HHHHH
Confidence 88753
No 149
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=1.7e-10 Score=122.84 Aligned_cols=169 Identities=20% Similarity=0.302 Sum_probs=115.9
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHh---h--------------HHHHH----HhCCCCCccceecCCCCC
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLR---R--------------KEFYR----RVGKAWKRGYLLYGPPGT 257 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~---~--------------~~~~~----~~g~~~~rgiLL~GppGt 257 (474)
.| |....|..|-+|.|++.+-..+...++.+=. . ++.+. ..+.|.++-+||+||||-
T Consensus 260 LW--Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LW--VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred ee--ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 56 5577899999999999999999988876521 0 01111 123566677899999999
Q ss_pred cHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhh----------cCCcEEEEecccccccccccCCCCCCCCCchh
Q 011935 258 GKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLST----------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTK 327 (474)
Q Consensus 258 GKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~----------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~ 327 (474)
|||+||+.+|+..|+.++++|.++-.+...++.-+..+ .+|..|||||||-.. .
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------------~ 401 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------------R 401 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc----------------H
Confidence 99999999999999999999999998877777665443 368899999999432 1
Q ss_pred hHHhhHHhhhc--Cc---ccCCC------------CceEEEEecCCCCCCCcccc--CCCccceEEEeCCCCHHHHHHHH
Q 011935 328 LTLSGILNFID--GL---WSSCG------------DERIIVFTTNHKERIDPALL--RPGRMDVHINMSYCTVHGFKVLA 388 (474)
Q Consensus 328 ~~l~~LL~~id--g~---~~~~~------------~~~iiI~tTN~~~~Ld~aLl--rpGRfd~~I~~~~p~~~~~~~l~ 388 (474)
..+..++..+. +. ....+ =.+-||+.+|.. .-|||+ | =+-..|.|+.|......+-+
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr--~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLR--PFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcc--cceEEEEecCCChhHHHHHH
Confidence 22222222221 00 00000 125688989864 357775 5 47778999999887654333
Q ss_pred H
Q 011935 389 S 389 (474)
Q Consensus 389 ~ 389 (474)
+
T Consensus 478 ~ 478 (877)
T KOG1969|consen 478 N 478 (877)
T ss_pred H
Confidence 3
No 150
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=4e-11 Score=121.56 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=102.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------cEE-----
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF-------DIY----- 275 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~-------~~~----- 275 (474)
.-+|++|+|+++.|..+...+.. |...|+||.||+|||||++++++++.+.. ++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 44799999999999998776553 22468999999999999999999887631 111
Q ss_pred -----------------------EEeccccc---Chh------HHHHHHHh-----------hcCCcEEEEecccccccc
Q 011935 276 -----------------------DLELTSIY---SNS------DLRRILLS-----------TTNRSILVIEDVDCSVEM 312 (474)
Q Consensus 276 -----------------------~l~~~~~~---~~~------~l~~l~~~-----------~~~~sIl~iDeiD~l~~~ 312 (474)
.+.+..+- +++ ++.+.|.. ..+.++|++|||+.+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 00000000 111 12222221 12468999999998832
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCCC-CCCccccCCCccceEEEeCCCC-H
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCT-V 381 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~~-~Ld~aLlrpGRfd~~I~~~~p~-~ 381 (474)
.+.+.|+..|+. .........++|+|.|..+ .+.++|+. ||.++|.+.+|+ .
T Consensus 159 ---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 ---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred ---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 344556666642 2112233456667777544 69999999 999999999998 5
Q ss_pred HHHHHHHHHhhc
Q 011935 382 HGFKVLASNYLG 393 (474)
Q Consensus 382 ~~~~~l~~~~l~ 393 (474)
+.+.+|++....
T Consensus 222 ~~e~~il~~~~~ 233 (350)
T CHL00081 222 ELRVKIVEQRTS 233 (350)
T ss_pred HHHHHHHHhhhc
Confidence 889999988643
No 151
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=122.69 Aligned_cols=161 Identities=15% Similarity=0.289 Sum_probs=102.2
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccc
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSI 282 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~ 282 (474)
+.+|++.+-.+.-. .....+..+...+ |.. ..+++||||+|||||+|++|+++++ +..++.+++.++
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888876333222 2223333333222 222 2468999999999999999999975 356777776655
Q ss_pred cCh---------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 283 YSN---------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 283 ~~~---------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
... ..+........+..+|+||||+.+.. ....+..+..++|.+.. . +..+|+|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~-----------k~~~~e~lf~l~N~~~~---~---~k~iIlt 245 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY-----------KEKTNEIFFTIFNNFIE---N---DKQLFFS 245 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-----------CHHHHHHHHHHHHHHHH---c---CCcEEEE
Confidence 311 12222223335677999999997743 12233445555655532 2 1245666
Q ss_pred cCCC----CCCCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 354 TNHK----ERIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 354 TN~~----~~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+|.+ ..+++.|.. ||. ..+.+..|+.+++.+++++.+...
T Consensus 246 sd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 246 SDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred CCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 6643 345788888 885 688899999999999999988754
No 152
>PRK06620 hypothetical protein; Validated
Probab=99.24 E-value=1.8e-10 Score=109.87 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=91.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC-CccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
..+..+|++++..+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++. ....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~- 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF- 78 (214)
T ss_pred CCCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-
Confidence 345558998764442222 2333333321 122222 3679999999999999999999988753322 1111
Q ss_pred ChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC--CC
Q 011935 284 SNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER--ID 361 (474)
Q Consensus 284 ~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~--Ld 361 (474)
.. .. .....+|+|||||.+- ...+..++|.+.. . +..++|.++..|.. +
T Consensus 79 -~~---~~---~~~~d~lliDdi~~~~----------------~~~lf~l~N~~~e---~--g~~ilits~~~p~~l~l- 129 (214)
T PRK06620 79 -NE---EI---LEKYNAFIIEDIENWQ----------------EPALLHIFNIINE---K--QKYLLLTSSDKSRNFTL- 129 (214)
T ss_pred -ch---hH---HhcCCEEEEeccccch----------------HHHHHHHHHHHHh---c--CCEEEEEcCCCccccch-
Confidence 11 11 1245789999999441 2345566666542 1 33566665555543 5
Q ss_pred ccccCCCccc--eEEEeCCCCHHHHHHHHHHhhc
Q 011935 362 PALLRPGRMD--VHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 362 ~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
|+|+. |+. ..+.+..|+.+.+.++++....
T Consensus 130 ~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 130 PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 78888 886 3689999999999999988765
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=1.1e-10 Score=131.91 Aligned_cols=199 Identities=18% Similarity=0.227 Sum_probs=124.5
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
+.|+|+++.++.|...+.... .|.. |...+||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 468899999998887765332 2221 22358999999999999999999987 36788888877643
Q ss_pred hhHHHH----------------HHHh--hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCC
Q 011935 285 NSDLRR----------------ILLS--TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSC 344 (474)
Q Consensus 285 ~~~l~~----------------l~~~--~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~ 344 (474)
...+.+ +... ....+||+|||||++- ....+.|+..+|.-. ...
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~----------------~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH----------------PDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC----------------HHHHHHHHHHhccCceecCC
Confidence 222211 1111 1235899999999873 234566777776321 111
Q ss_pred -----CCceEEEEecCCCCC-------------------------------------CCccccCCCccceEEEeCCCCHH
Q 011935 345 -----GDERIIVFTTNHKER-------------------------------------IDPALLRPGRMDVHINMSYCTVH 382 (474)
Q Consensus 345 -----~~~~iiI~tTN~~~~-------------------------------------Ld~aLlrpGRfd~~I~~~~p~~~ 382 (474)
-.+.++|+|||.... +.|.|+. |+|..|.|.+.+.+
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~ 722 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKN 722 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHH
Confidence 145789999994311 2245666 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Q 011935 383 GFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNFLKRK 443 (474)
Q Consensus 383 ~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~-~~~~~~al~~l~~~l~~~ 443 (474)
+..+|+...+... ...+...--...+++.-+ +++.. ..++....+.+.+.++..
T Consensus 723 ~l~~Iv~~~l~~l------~~rl~~~~i~l~~~~~~~-~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 723 DVWEIAEIMLKNL------FKRLNEQGIQLEVTERIK-TLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred HHHHHHHHHHHHH------HHHHHHCCcEEEECHHHH-HHHHHhcCCCCCChhhHHHHHHHH
Confidence 9999998887532 111111100134666544 34443 345555555555555544
No 154
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=1.2e-10 Score=111.44 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=84.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccccC-------hhHHHHHHHhhcCCcEEEEecccccccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIYS-------NSDLRRILLSTTNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~ 314 (474)
..++||||+|+|||+|.+|+++++ +..++.++..++.. ...+.........--+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~--- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG--- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT---
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC---
Confidence 358999999999999999999875 45677777665531 122333444456778999999998853
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC---CCccccCCCccce--EEEeCCCCHHHHHHHHH
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDPALLRPGRMDV--HINMSYCTVHGFKVLAS 389 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~---Ld~aLlrpGRfd~--~I~~~~p~~~~~~~l~~ 389 (474)
....+..+..++|.+- .. +..+|+.+...|.. ++|.|.. ||.. .+.+..|+.+.+.++++
T Consensus 112 --------~~~~q~~lf~l~n~~~---~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 112 --------KQRTQEELFHLFNRLI---ES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp --------HHHHHHHHHHHHHHHH---HT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHH---hh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHH
Confidence 1112344445555443 22 33555555456654 4577777 7764 88999999999999999
Q ss_pred Hhhccc
Q 011935 390 NYLGIK 395 (474)
Q Consensus 390 ~~l~~~ 395 (474)
......
T Consensus 177 ~~a~~~ 182 (219)
T PF00308_consen 177 KKAKER 182 (219)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988655
No 155
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=1.1e-10 Score=108.82 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=90.7
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC------------------------cEEEEeccc-ccChhHHHHHHHhhc---
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF------------------------DIYDLELTS-IYSNSDLRRILLSTT--- 296 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~------------------------~~~~l~~~~-~~~~~~l~~l~~~~~--- 296 (474)
.+..+|||||||+|||++++++|+.+.. ++..++... ....+.++.++....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4567999999999999999999998743 233333221 113456666554432
Q ss_pred ---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceE
Q 011935 297 ---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVH 373 (474)
Q Consensus 297 ---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~ 373 (474)
.+.|++|||+|.+.. ...+.||..++.. +...++|++||.+..+.+++.+ |+ ..
T Consensus 93 ~~~~~kviiide~~~l~~----------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~ 149 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE----------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QV 149 (188)
T ss_pred ccCCeEEEEEechhhhCH----------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EE
Confidence 356999999998832 3456788888752 2456788888888999999998 77 48
Q ss_pred EEeCCCCHHHHHHHHHHh
Q 011935 374 INMSYCTVHGFKVLASNY 391 (474)
Q Consensus 374 I~~~~p~~~~~~~l~~~~ 391 (474)
++++.|+.++...++...
T Consensus 150 ~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 999999999988888765
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1e-10 Score=127.74 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=131.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLE 278 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~ 278 (474)
-.+|.++|.++.++.+++.+.+.. +.+-+|.|+||+|||.++..+|... +..++.+|
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 468999999999999998877443 4567999999999999999999876 56799999
Q ss_pred cccccC--------hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCce
Q 011935 279 LTSIYS--------NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 348 (474)
Q Consensus 279 ~~~~~~--------~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ 348 (474)
++.+.. ++.++.++.+.. .+.||||||||.+.+..+..+. + ......|--.|. . ++.
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a---~DAaNiLKPaLA--------R-GeL 300 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-A---MDAANLLKPALA--------R-GEL 300 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-c---cchhhhhHHHHh--------c-CCe
Confidence 888763 466777776654 3789999999999863322111 0 111122222221 1 334
Q ss_pred EEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 349 IIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 349 iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
-+|++|..-+ .=|+||-| ||. .|.+..|+.++-..|++-.-.....+|...-.-+++.. .+.+....
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~a-----Av~LS~RY 372 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVA-----AVTLSDRY 372 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHH-----HHHHHHhh
Confidence 4555554221 23899999 995 78999999999888877654443333332111111111 11222323
Q ss_pred h-ccCCHHHHHHHHHHHHHHHHHH
Q 011935 424 M-KADDADVALEGLVNFLKRKRIQ 446 (474)
Q Consensus 424 ~-~~~~~~~al~~l~~~l~~~~~~ 446 (474)
+ ...-|+.|++.+.++....+.+
T Consensus 373 I~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 373 IPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred cccCCCCchHHHHHHHHHHHHHhc
Confidence 3 3335777887777777766654
No 157
>PRK09087 hypothetical protein; Validated
Probab=99.17 E-value=6.8e-10 Score=106.74 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=78.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCch
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNT 326 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~ 326 (474)
+.++||||+|+|||+|++++|+..+..++.. ..+ ....+ . .....+|+|||++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~-~~~~~----~-~~~~~~l~iDDi~~~~~--------------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEI-GSDAA----N-AAAEGPVLIEDIDAGGF--------------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHc-chHHH----H-hhhcCeEEEECCCCCCC--------------C
Confidence 3489999999999999999999876664433 222 11111 1 11225899999997621 1
Q ss_pred hhHHhhHHhhhcCcccCCCCceEEEEecCCCC---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 327 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 327 ~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~---~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+..+..++|.+.. . +..+||.++..|. ...|+|+. |+. ..+++..|+.+.+.+++++.+...
T Consensus 103 ~~~lf~l~n~~~~---~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 103 ETGLFHLINSVRQ---A--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred HHHHHHHHHHHHh---C--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 2335555555432 1 2244444444443 23688888 885 789999999999999999988643
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=1.6e-10 Score=116.99 Aligned_cols=153 Identities=22% Similarity=0.288 Sum_probs=100.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-------CcEE-------
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-------FDIY------- 275 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-------~~~~------- 275 (474)
.|..|+|++++|..+.-.+..+ ...+++|.||||||||++++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4889999999998886544422 235799999999999999999998772 1111
Q ss_pred ------E------------------Eecc------cccChhHHHHHHH-----------hhcCCcEEEEecccccccccc
Q 011935 276 ------D------------------LELT------SIYSNSDLRRILL-----------STTNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 276 ------~------------------l~~~------~~~~~~~l~~l~~-----------~~~~~sIl~iDeiD~l~~~~~ 314 (474)
. +++. .+...-++...+. ...++++|+||||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 0111 1111122222221 11345899999999873
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCCC-CCCccccCCCccceEEEeCCCCH-HH
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HG 383 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~~-~Ld~aLlrpGRfd~~I~~~~p~~-~~ 383 (474)
..+.+.|++.|+. ........+++|+|+|..+ .++++|+. ||.++|.+++|.. ++
T Consensus 145 ------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 145 ------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred ------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 2344556666632 2222223467777777544 69999999 9999999999986 78
Q ss_pred HHHHHHHhhc
Q 011935 384 FKVLASNYLG 393 (474)
Q Consensus 384 ~~~l~~~~l~ 393 (474)
+.+|+++...
T Consensus 211 r~eIL~~~~~ 220 (337)
T TIGR02030 211 RVEIVERRTE 220 (337)
T ss_pred HHHHHHhhhh
Confidence 8889888543
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=9.9e-10 Score=110.60 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=107.0
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-----------------
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF----------------- 272 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~----------------- 272 (474)
.|++|+|++.+++.+...+..- ..+.+|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4889999999999888766521 23568999999999999999999998622
Q ss_pred -cEEEEecccc-----------------------cChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCC
Q 011935 273 -DIYDLELTSI-----------------------YSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASV 322 (474)
Q Consensus 273 -~~~~l~~~~~-----------------------~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~ 322 (474)
+++.+..... ..-+.++.+..... ...|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233322100 01134555543332 35799999999883
Q ss_pred CCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 323 GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 323 ~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
....+.||..++.- + +.++|++|+.++.|-|++++ |+ ..|.|+.++.++..+++....
T Consensus 138 ----~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 138 ----EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ----HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 23457788888753 2 34678888899999999998 88 688999999999988888764
No 160
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=3.7e-10 Score=114.67 Aligned_cols=146 Identities=18% Similarity=0.304 Sum_probs=105.3
Q ss_pred CCccccc-ChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC----------------
Q 011935 210 TFDTLAM-DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF---------------- 272 (474)
Q Consensus 210 ~f~~l~g-~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~---------------- 272 (474)
.|++|+| ++.+++.+...+.. ...+..||||||+|+||+++|+++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 77788877665431 234678999999999999999999988632
Q ss_pred --------cEEEEecccc-cChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhh
Q 011935 273 --------DIYDLELTSI-YSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFI 337 (474)
Q Consensus 273 --------~~~~l~~~~~-~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~i 337 (474)
++..+....- ..-+.++.+..... ..-|++|||+|.+. ....+.||..+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~----------------~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT----------------ASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC----------------HHHHHHHHHHh
Confidence 2333322111 13356666654432 34699999999873 23467888888
Q ss_pred cCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 338 DGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 338 dg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
+. +++..++|++|+.+..|.|++++ |+ ..++|+.|+.++....+..
T Consensus 135 EE----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 75 34567888899999999999998 88 5789999999987766654
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=2.3e-09 Score=108.57 Aligned_cols=124 Identities=18% Similarity=0.290 Sum_probs=94.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC------------------------cEEEEeccc---ccChhHHHHHHHhhc-
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF------------------------DIYDLELTS---IYSNSDLRRILLSTT- 296 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~------------------------~~~~l~~~~---~~~~~~l~~l~~~~~- 296 (474)
.+.++||+||+|+||+++|+++|+.+.. +++.+.... ...-+.++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998743 455554321 224567777665442
Q ss_pred -----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccc
Q 011935 297 -----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 371 (474)
Q Consensus 297 -----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd 371 (474)
..-|++||++|.+. ....+.||..++. ++++.++|++|++++.|.|.+++ |+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~----------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN----------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred ccccCCCeEEEECChhhCC----------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 34588999999883 3456788888875 33568889999999999999999 985
Q ss_pred eEEEeCCCCHHHHHHHHHHh
Q 011935 372 VHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~~ 391 (474)
.+.|+.|+.++....+...
T Consensus 159 -~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHh
Confidence 5899999999887777654
No 162
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=8.5e-11 Score=108.08 Aligned_cols=109 Identities=21% Similarity=0.390 Sum_probs=75.1
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC----cEEEEecccccC----hhHHHHHHHhhc------CCcEEEEecccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF----DIYDLELTSIYS----NSDLRRILLSTT------NRSILVIEDVDCSV 310 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~----~~~~l~~~~~~~----~~~l~~l~~~~~------~~sIl~iDeiD~l~ 310 (474)
|...+||+||+|||||.+|+++|..+.. +++.+|++.+.. ...+..++.... ...||+|||||++.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3457899999999999999999999996 999999999987 444555554432 34699999999986
Q ss_pred cccccCCCCCCCCCchhhHHhhHHhhhcCccc--CCC-----CceEEEEecCCCC
Q 011935 311 EMKDRQNDGASVGSNTKLTLSGILNFIDGLWS--SCG-----DERIIVFTTNHKE 358 (474)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~--~~~-----~~~iiI~tTN~~~ 358 (474)
.. .+...+.......+.||..+|+-.- ..+ .+.++|+|+|--.
T Consensus 82 ~~-----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PS-----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HT-----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc-----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 52 1111122233556777877764221 111 4578999999643
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=8.4e-10 Score=114.44 Aligned_cols=133 Identities=19% Similarity=0.336 Sum_probs=79.8
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc-----EEEEecccccC-
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD-----IYDLELTSIYS- 284 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~-----~~~l~~~~~~~- 284 (474)
++++.+.++..+.+...+. .+++++|+||||||||++|+++|..+... +..+....-.+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5556666666555544333 25789999999999999999999987531 11111111000
Q ss_pred -----------------hhHHHHHHHhh----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhc-----
Q 011935 285 -----------------NSDLRRILLST----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFID----- 338 (474)
Q Consensus 285 -----------------~~~l~~l~~~~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id----- 338 (474)
..-+.+++..+ ..+.+||||||++.-.. ..+..++..|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~---------------kiFGel~~lLE~~~rg 303 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS---------------KVFGEVMMLMEHDKRG 303 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH---------------Hhhhhhhhhccccccc
Confidence 11223333333 25799999999976321 11111111111
Q ss_pred ---------------CcccCCCCceEEEEecCCCC----CCCccccCCCccceEEEeCC
Q 011935 339 ---------------GLWSSCGDERIIVFTTNHKE----RIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 339 ---------------g~~~~~~~~~iiI~tTN~~~----~Ld~aLlrpGRfd~~I~~~~ 378 (474)
.+ ..+.++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 304 ~~~~v~l~y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 304 ENWSVPLTYSENDEERF--YVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred cccceeeeccccccccc--cCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 11 2236789999999887 79999999 995 466653
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=5.3e-10 Score=108.36 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=83.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
...+.+|++.....+..+.+...+..+...- . ....+++|+||||||||+|+.+||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 4456789988755444444555555554321 1 113589999999999999999999988 66777777766
Q ss_pred ccC---------hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEE
Q 011935 282 IYS---------NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVF 352 (474)
Q Consensus 282 ~~~---------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~ 352 (474)
+.. +.....++....+..+|+|||+++... .......+..+++.-- ....-+|+
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~-----------s~~~~~~l~~Ii~~Ry------~~~~~tii 200 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE-----------SRYEKVIINQIVDRRS------SSKRPTGM 200 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC-----------CHHHHHHHHHHHHHHH------hCCCCEEE
Confidence 541 112334555566788999999987632 2233445556665421 12356888
Q ss_pred ecCCC
Q 011935 353 TTNHK 357 (474)
Q Consensus 353 tTN~~ 357 (474)
|||..
T Consensus 201 tSNl~ 205 (244)
T PRK07952 201 LTNSN 205 (244)
T ss_pred eCCCC
Confidence 99964
No 165
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.08 E-value=3.8e-10 Score=105.63 Aligned_cols=140 Identities=21% Similarity=0.354 Sum_probs=65.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEE--EEeccccc----
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIY--DLELTSIY---- 283 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~--~l~~~~~~---- 283 (474)
.|++|+|++.+|..+.-... | ..++||+||||||||++|+++..-+.---. .++...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 38899999999998854333 2 369999999999999999999986621000 00111111
Q ss_pred -----------------ChhHHHHHHHh----------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhh
Q 011935 284 -----------------SNSDLRRILLS----------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNF 336 (474)
Q Consensus 284 -----------------~~~~l~~l~~~----------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~ 336 (474)
.......++-. ...++|||+||+-.+ ...++..|+.-
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef----------------~~~vld~Lr~p 129 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF----------------DRSVLDALRQP 129 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-----------------HHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc----------------CHHHHHHHHHH
Confidence 11222223311 235789999999644 45677888877
Q ss_pred hcCc---------ccCCCCceEEEEecCC-----------------------CCCCCccccCCCccceEEEeCCCCHH
Q 011935 337 IDGL---------WSSCGDERIIVFTTNH-----------------------KERIDPALLRPGRMDVHINMSYCTVH 382 (474)
Q Consensus 337 idg~---------~~~~~~~~iiI~tTN~-----------------------~~~Ld~aLlrpGRfd~~I~~~~p~~~ 382 (474)
++.- .-.-..+.++|+|+|. ..+|...|+. |||.+|.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 7531 0111234578888883 1234556666 88888888776654
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.08 E-value=9e-10 Score=115.11 Aligned_cols=128 Identities=16% Similarity=0.242 Sum_probs=81.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC--cEEEEecc-----cccChhHHHHH-----HHhhc-----CCcEEEEecccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELT-----SIYSNSDLRRI-----LLSTT-----NRSILVIEDVDC 308 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~-----~~~~~~~l~~l-----~~~~~-----~~sIl~iDeiD~ 308 (474)
..++||+||||||||++|+++|..++. ++..+.+. ++.....+... |.... ...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 468999999999999999999997753 23333222 22111111111 11111 234899999986
Q ss_pred cccccccCCCCCCCCCchhhHHhhHHhhhc-CcccCCC-----CceEEEEecCCCC---CCCccccCCCccceEEEeCCC
Q 011935 309 SVEMKDRQNDGASVGSNTKLTLSGILNFID-GLWSSCG-----DERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYC 379 (474)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~l~~LL~~id-g~~~~~~-----~~~iiI~tTN~~~---~Ld~aLlrpGRfd~~I~~~~p 379 (474)
+. ..+.+.||..|. +.....+ ..+++|++||... ...+|+.. ||-+.|.+|+|
T Consensus 119 as----------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 119 AG----------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred CC----------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 63 456788888883 2211111 2357777787432 23358999 99999999999
Q ss_pred C-HHHHHHHHHHh
Q 011935 380 T-VHGFKVLASNY 391 (474)
Q Consensus 380 ~-~~~~~~l~~~~ 391 (474)
+ .+++..|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 7 56678888764
No 167
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.08 E-value=2.4e-09 Score=108.30 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCCCc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCCccceecCCCCCcHHHHHHHHHHHhCC-------cEEEEe
Q 011935 208 PSTFD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLRF-------DIYDLE 278 (474)
Q Consensus 208 ~~~f~-~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGtGKT~la~alA~~l~~-------~~~~l~ 278 (474)
-.-|+ +++|.++.++++.+.+..... |. ..++.++|+||||||||++|++||+.++. ++|.+.
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 34577 899999999999887765542 22 33577899999999999999999999976 888887
Q ss_pred c
Q 011935 279 L 279 (474)
Q Consensus 279 ~ 279 (474)
.
T Consensus 118 ~ 118 (361)
T smart00763 118 W 118 (361)
T ss_pred e
Confidence 6
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.5e-09 Score=109.30 Aligned_cols=143 Identities=19% Similarity=0.229 Sum_probs=99.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---------------------
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR--------------------- 271 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~--------------------- 271 (474)
++++.+.....+.......- ..+..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 34555555555544443221 2233699999999999999999999987
Q ss_pred ---CcEEEEecccccC----hhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhc
Q 011935 272 ---FDIYDLELTSIYS----NSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFID 338 (474)
Q Consensus 272 ---~~~~~l~~~~~~~----~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id 338 (474)
.+++.++.++... .+.++++..... +.-|++|||+|.+.. ...+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----------------~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----------------DAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----------------HHHHHHHHHhc
Confidence 5788888887764 334555544332 346999999998842 33566666665
Q ss_pred CcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 011935 339 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 389 (474)
Q Consensus 339 g~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~ 389 (474)
. +..+..+|++||.+..+-|.+.+ |+ ..+.|+.|+...+....+
T Consensus 135 e----p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 E----PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred c----CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 4 34567899999999999999998 88 578888766555443333
No 169
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=1.1e-09 Score=107.90 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=74.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh----------hHHHHHHHhhcCCcEEEEecccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN----------SDLRRILLSTTNRSILVIEDVDCSVEM 312 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~----------~~l~~l~~~~~~~sIl~iDeiD~l~~~ 312 (474)
+.|++|+||||||||+|+.|||+++ +.+++.++..++... .....++....+..+|+|||+...-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~- 192 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD- 192 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-
Confidence 4679999999999999999999986 677777776654311 11223444455667999999964211
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC-CC----CCccccCCCcc---ceEEEeCCCCH
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-ER----IDPALLRPGRM---DVHINMSYCTV 381 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-~~----Ld~aLlrpGRf---d~~I~~~~p~~ 381 (474)
.. .....|.+.++.... .+..+|+|||.+ +. +++++.. |+ ...|.++-++.
T Consensus 193 ----------t~---~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 193 ----------TE---WAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ----------CH---HHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 11 223344445544322 234588888865 33 4667766 64 34567766664
No 170
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.06 E-value=1.1e-10 Score=100.91 Aligned_cols=106 Identities=25% Similarity=0.297 Sum_probs=61.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHH--HHh-------hcC---CcEEEEeccccccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRI--LLS-------TTN---RSILVIEDVDCSVEMKDR 315 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l--~~~-------~~~---~sIl~iDeiD~l~~~~~~ 315 (474)
++||.|+||+|||++|+++|..++.++..+.++.-...+++... +.. ... ..|+++|||.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 47999999999999999999999999999988643333333211 010 011 3699999998763
Q ss_pred CCCCCCCCCchhhHHhhHHhhhcC-------cccCCCCceEEEEecCCCC-----CCCccccCCCccc
Q 011935 316 QNDGASVGSNTKLTLSGILNFIDG-------LWSSCGDERIIVFTTNHKE-----RIDPALLRPGRMD 371 (474)
Q Consensus 316 ~~~~~~~~~~~~~~l~~LL~~idg-------~~~~~~~~~iiI~tTN~~~-----~Ld~aLlrpGRfd 371 (474)
..+.+.||..|.. ..-..++..+||+|-|..+ .|++|++. ||-
T Consensus 76 -----------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 76 -----------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp -----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred -----------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 3567778877742 2223345578888999776 68888888 873
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=2e-09 Score=116.92 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=119.2
Q ss_pred CCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEE-
Q 011935 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYD- 276 (474)
Q Consensus 198 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~- 276 (474)
..|. ....|.++++|+|+++..+.+...+.... .+..+.+.++|+||||||||++++++|+.++..++.
T Consensus 72 ~pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 72 EPWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred CchH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 3574 46889999999999999988776655322 122334558999999999999999999998865433
Q ss_pred Eecc---c--------------c----cChhHHHHHHHhh------------cCCcEEEEecccccccccccCCCCCCCC
Q 011935 277 LELT---S--------------I----YSNSDLRRILLST------------TNRSILVIEDVDCSVEMKDRQNDGASVG 323 (474)
Q Consensus 277 l~~~---~--------------~----~~~~~l~~l~~~~------------~~~sIl~iDeiD~l~~~~~~~~~~~~~~ 323 (474)
.+.. . + .....+..++..+ .++.||+||||+.++.
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~------------ 209 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY------------ 209 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch------------
Confidence 1110 0 0 0123344444332 2457999999998753
Q ss_pred CchhhHHhhHHh--hhcCcccCCCCceEEEEecCCCC--------C------CCccccCCCccceEEEeCCCCHHHHHHH
Q 011935 324 SNTKLTLSGILN--FIDGLWSSCGDERIIVFTTNHKE--------R------IDPALLRPGRMDVHINMSYCTVHGFKVL 387 (474)
Q Consensus 324 ~~~~~~l~~LL~--~idg~~~~~~~~~iiI~tTN~~~--------~------Ld~aLlrpGRfd~~I~~~~p~~~~~~~l 387 (474)
. ....+..+|. ..+ .+.-.+|+++|..+. . |.++++..-|+ .+|.|++.+....++.
T Consensus 210 r-~~~~lq~lLr~~~~e-----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 210 R-DTRALHEILRWKYVS-----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKF 282 (637)
T ss_pred h-hHHHHHHHHHHHhhc-----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHH
Confidence 1 1123444444 222 111123333332221 1 33677743344 3799999999998888
Q ss_pred HHHhhcccCCCCCcHHHHHhhhcCCCC-CHHHHHHHH-hccCCHHHHHHHHHHHH
Q 011935 388 ASNYLGIKGKSHSLFGEIEGLIQSTDV-TPAEVAEEL-MKADDADVALEGLVNFL 440 (474)
Q Consensus 388 ~~~~l~~~~~~~~l~~~i~~l~~~~~~-tpa~i~~~l-~~~~~~~~al~~l~~~l 440 (474)
+...+...+ .. ......+ ++..+...+ ...+|.+.|+..|.-+.
T Consensus 283 L~rIl~~E~--~~-------~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 283 LNRIVTIEA--KK-------NGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHhhh--hc-------cccccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 888775431 00 0011112 233333322 35678888888776543
No 172
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.1e-09 Score=102.38 Aligned_cols=122 Identities=21% Similarity=0.360 Sum_probs=81.2
Q ss_pred Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhCC-------C-CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGK-------A-WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 211 f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-------~-~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
+|+ ++|++..|+.+.=.+-. .|+++.. . .+.++||.||.|||||.||+.+|..++.||..-|++.
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred hhhheecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 444 67888888866433332 2333321 1 2568999999999999999999999999999999988
Q ss_pred ccC--------hhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc
Q 011935 282 IYS--------NSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL 340 (474)
Q Consensus 282 ~~~--------~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~ 340 (474)
+.. +.-+.+++..+ .+++||+|||||++..... +.+-..+-...-....||..++|.
T Consensus 133 LTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe--N~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 133 LTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC--CCCcccccCchHHHHHHHHHHcCc
Confidence 852 23345555544 3689999999999964221 111111222234456678888775
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=1.7e-09 Score=118.80 Aligned_cols=153 Identities=21% Similarity=0.231 Sum_probs=101.9
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-------------------
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 270 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l------------------- 270 (474)
.|..|+|++.++..+.-.+... ...|+||.||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999887764433311 12479999999999999999999988
Q ss_pred ----------------CCcEEEEecccc----cChhHHHHHHHh-----------hcCCcEEEEecccccccccccCCCC
Q 011935 271 ----------------RFDIYDLELTSI----YSNSDLRRILLS-----------TTNRSILVIEDVDCSVEMKDRQNDG 319 (474)
Q Consensus 271 ----------------~~~~~~l~~~~~----~~~~~l~~l~~~-----------~~~~sIl~iDeiD~l~~~~~~~~~~ 319 (474)
..+++.+.+... ...-++...+.. ....+|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 235555544321 112223332221 1245799999999883
Q ss_pred CCCCCchhhHHhhHHhhhcCc---------ccCCCCceEEEEecCCC-CCCCccccCCCccceEEEeCCCC-HHHHHHHH
Q 011935 320 ASVGSNTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHK-ERIDPALLRPGRMDVHINMSYCT-VHGFKVLA 388 (474)
Q Consensus 320 ~~~~~~~~~~l~~LL~~idg~---------~~~~~~~~iiI~tTN~~-~~Ld~aLlrpGRfd~~I~~~~p~-~~~~~~l~ 388 (474)
..+.+.|+..|+.- .......+++|+|+|.. ..+.++|+. ||+++|.++++. .+++.+++
T Consensus 140 -------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 -------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred -------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 24456677776521 11112346788888854 468899999 999999999886 56677777
Q ss_pred HHhhc
Q 011935 389 SNYLG 393 (474)
Q Consensus 389 ~~~l~ 393 (474)
...+.
T Consensus 211 ~~~~~ 215 (633)
T TIGR02442 211 RRRLA 215 (633)
T ss_pred HHHHh
Confidence 76543
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.04 E-value=4.3e-09 Score=95.96 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=81.6
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh-----------------------CCcEEEEecccc---cChhHHHHHHHhhc-
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL-----------------------RFDIYDLELTSI---YSNSDLRRILLSTT- 296 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l-----------------------~~~~~~l~~~~~---~~~~~l~~l~~~~~- 296 (474)
..+..+||+||+|+||+++|.++|+.+ ..+++.++.... ...+.++.+.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 346689999999999999999999876 134666655543 24577777766543
Q ss_pred -----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccc
Q 011935 297 -----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 371 (474)
Q Consensus 297 -----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd 371 (474)
..-|++|||+|.+. ....+.||..|+.- +...++|++|+.++.+.|.+++ |+
T Consensus 97 ~~~~~~~KviiI~~ad~l~----------------~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc- 153 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT----------------EEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RC- 153 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-----------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TS-
T ss_pred HHhcCCceEEEeehHhhhh----------------HHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hc-
Confidence 34699999999883 35578889888853 4668999999999999999998 88
Q ss_pred eEEEeCCC
Q 011935 372 VHINMSYC 379 (474)
Q Consensus 372 ~~I~~~~p 379 (474)
..|.|+..
T Consensus 154 ~~i~~~~l 161 (162)
T PF13177_consen 154 QVIRFRPL 161 (162)
T ss_dssp EEEEE---
T ss_pred eEEecCCC
Confidence 56777654
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1.2e-09 Score=94.49 Aligned_cols=118 Identities=24% Similarity=0.339 Sum_probs=71.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc---EEEEecccccC--------------------hhHHHHHHHhhc--CCcE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD---IYDLELTSIYS--------------------NSDLRRILLSTT--NRSI 300 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~---~~~l~~~~~~~--------------------~~~l~~l~~~~~--~~sI 300 (474)
+..++|+||||||||++++++|..+... ++.+++..... .......+..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999999775 77777665321 223333444333 3599
Q ss_pred EEEecccccccccccCCCCCCCCCchhhHHhhH--HhhhcCcccCCCCceEEEEecCC-CCCCCccccCCCccceEEEeC
Q 011935 301 LVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGI--LNFIDGLWSSCGDERIIVFTTNH-KERIDPALLRPGRMDVHINMS 377 (474)
Q Consensus 301 l~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~L--L~~idg~~~~~~~~~iiI~tTN~-~~~Ld~aLlrpGRfd~~I~~~ 377 (474)
|+|||++.+.... ........ ....... .......+|+++|. ....+..+.+ |++.++.++
T Consensus 82 iiiDei~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (148)
T smart00382 82 LILDEITSLLDAE------------QEALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLL 145 (148)
T ss_pred EEEECCcccCCHH------------HHHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEec
Confidence 9999999885411 01111000 0000000 11134678888886 3334444455 888888876
Q ss_pred CC
Q 011935 378 YC 379 (474)
Q Consensus 378 ~p 379 (474)
.+
T Consensus 146 ~~ 147 (148)
T smart00382 146 LI 147 (148)
T ss_pred CC
Confidence 55
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.01 E-value=6.4e-09 Score=112.46 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
..+|+.++|.+...+++.+.+..... ....+||+|++||||+++|++|.... +.+++.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35789999999999999998886643 24689999999999999999999875 56899999998843
Q ss_pred hhHHHHHH-H-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc-ccCCC
Q 011935 285 NSDLRRIL-L-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL-WSSCG 345 (474)
Q Consensus 285 ~~~l~~l~-~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~-~~~~~ 345 (474)
..+...+ . ...++++|||||||.+.. .....|+..++.- ....+
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~----------------~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP----------------AFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH----------------HHHHHHHHHHhcCcEEECC
Confidence 3333222 1 123468999999998832 2234555555421 11111
Q ss_pred C------ceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCC--HHHHHHHHHHhhcc
Q 011935 346 D------ERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCT--VHGFKVLASNYLGI 394 (474)
Q Consensus 346 ~------~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~--~~~~~~l~~~~l~~ 394 (474)
+ ++-+|+||+.. ..+.+.|.. |+. ..|.+|+.. .++...|+..|+..
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence 1 24566776643 223334443 443 467777665 45677788887753
No 177
>PRK12377 putative replication protein; Provisional
Probab=99.00 E-value=3.2e-09 Score=103.22 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=63.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC--------hhHHHHHHHhhcCCcEEEEecccccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS--------NSDLRRILLSTTNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~--------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~ 314 (474)
..+++|+||||||||+|+.|||+++ +..++.++..++.. ......++....+..+|+|||+.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~--- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE--- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC---
Confidence 3689999999999999999999987 56666666665532 112334555567788999999975421
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
.......+..+++.-- ....-+|+|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~------~~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRT------ASMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHH------hcCCCEEEEcCCC
Confidence 1223344444444422 1235578899964
No 178
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.2e-08 Score=101.58 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=93.4
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCC-------------------------cEEEEecc------------------
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRF-------------------------DIYDLELT------------------ 280 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~-------------------------~~~~l~~~------------------ 280 (474)
..+.+|||+||+|+||+++|+++|+.+.. +++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45679999999999999999999987732 12223211
Q ss_pred -----------cccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC
Q 011935 281 -----------SIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS 343 (474)
Q Consensus 281 -----------~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~ 343 (474)
....-+.++.+..... ..-|++||++|.+. ...-+.||..++.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------------~~AaNaLLKtLEE---- 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------------VAAANALLKTLEE---- 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------------HHHHHHHHHHhcC----
Confidence 0112356666655432 23599999999883 3456888888874
Q ss_pred CCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHh
Q 011935 344 CGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 344 ~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~ 391 (474)
++.+.++|++|++++.|.|.+++ |+ ..|.|+.|+.++..+.+...
T Consensus 159 Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 45678999999999999999999 99 68999999999888777653
No 179
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.98 E-value=2.2e-09 Score=107.72 Aligned_cols=96 Identities=23% Similarity=0.332 Sum_probs=65.3
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc--
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY-- 283 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~-- 283 (474)
.+|+++...+..+..+......|+..- .. .+..+|++|+||||||||+|+.|||+++ |..+..+..+++.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 567776655544544555455555321 11 1246799999999999999999999998 6777777666543
Q ss_pred -----ChhHHHHHHHhhcCCcEEEEeccccc
Q 011935 284 -----SNSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 284 -----~~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
....+...+....+..+|+|||+...
T Consensus 199 lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12234455666677889999999754
No 180
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-08 Score=101.79 Aligned_cols=93 Identities=20% Similarity=0.370 Sum_probs=67.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--------hhHHHHHHHhh------cCCcEEEEeccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS--------NSDLRRILLST------TNRSILVIEDVDCSVE 311 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~--------~~~l~~l~~~~------~~~sIl~iDeiD~l~~ 311 (474)
+.++||.||+|+|||.|++.||.-++.||...||+.+.. +.-+.+++..+ .+.+|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 468999999999999999999999999999999999862 35566777665 3689999999999963
Q ss_pred ccccCCCCCCCCCchhhHHhhHHhhhcCc
Q 011935 312 MKDRQNDGASVGSNTKLTLSGILNFIDGL 340 (474)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~LL~~idg~ 340 (474)
....-.... +-...-....||..++|.
T Consensus 306 ~~~~i~~~R--DVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSR--DVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccc--cccchhHHHHHHHHhccc
Confidence 221111111 111223445667666653
No 181
>PRK04132 replication factor C small subunit; Provisional
Probab=98.96 E-value=1.4e-08 Score=113.28 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=97.5
Q ss_pred cceecC--CCCCcHHHHHHHHHHHh-----CCcEEEEecccccChhHHHHHHHhhc--------CCcEEEEecccccccc
Q 011935 248 GYLLYG--PPGTGKSSLIAAMANYL-----RFDIYDLELTSIYSNSDLRRILLSTT--------NRSILVIEDVDCSVEM 312 (474)
Q Consensus 248 giLL~G--ppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~~~~l~~l~~~~~--------~~sIl~iDeiD~l~~~ 312 (474)
..+..| |++.||||+|+|+|+++ +.+++.+|.++..+.+.++.++.... +.-|++|||+|.+..
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~- 644 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ- 644 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH-
Confidence 356678 99999999999999998 56899999998767778887765432 125999999998832
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
...+.|+..|+.. +....+|++||.+..+.+++++ |+ ..+.|+.|+.++....+....
T Consensus 645 ---------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 645 ---------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred ---------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 3356777777753 2457899999999999999998 88 688999999988877777655
Q ss_pred c
Q 011935 393 G 393 (474)
Q Consensus 393 ~ 393 (474)
.
T Consensus 703 ~ 703 (846)
T PRK04132 703 E 703 (846)
T ss_pred H
Confidence 4
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.96 E-value=3.2e-09 Score=99.67 Aligned_cols=145 Identities=16% Similarity=0.283 Sum_probs=94.8
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-C----CcEEEE
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-R----FDIYDL 277 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-~----~~~~~l 277 (474)
+.-..|..+++|+|.++..+.+.-... -|- -.++++.||||||||+-+.++|+++ | -.+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~-----------~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 557889999999999999887744322 111 2379999999999999999999986 3 346677
Q ss_pred ecccccChhHHH---HHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCce
Q 011935 278 ELTSIYSNSDLR---RILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 348 (474)
Q Consensus 278 ~~~~~~~~~~l~---~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ 348 (474)
+.++-..-+-++ +.|.+.. ..-||++||+|.+.. ..+ ..|-..|+- +++ ..
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------------gAQ---QAlRRtMEi-yS~---tt 144 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------------GAQ---QALRRTMEI-YSN---TT 144 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------------HHH---HHHHHHHHH-Hcc---cc
Confidence 777765544444 3344332 235999999998742 111 223333332 322 23
Q ss_pred EEEEecCCCCCCCccccCCCccceEEEeCCCCHHH
Q 011935 349 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 383 (474)
Q Consensus 349 iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~ 383 (474)
-+.+++|..+++-+.+.+ |+- .+.+...+..+
T Consensus 145 RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~q 176 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQ 176 (333)
T ss_pred hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHH
Confidence 466788988888777766 664 34555555554
No 183
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.95 E-value=6.8e-09 Score=105.30 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=102.2
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChh
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNS 286 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 286 (474)
-|++++|.+...+.+.+.+..... ....+||+|++||||+++|++|.... +.+++.++|..+. +.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-EN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC-HH
Confidence 367899999999999998887753 24689999999999999999998765 4689999999874 33
Q ss_pred HHHHHH------------------HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-cCCC--
Q 011935 287 DLRRIL------------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-SSCG-- 345 (474)
Q Consensus 287 ~l~~l~------------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~~~~-- 345 (474)
.+...+ ....+.+.|||||||.+.. .....|++.++.-. ...+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~----------------~~Q~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------------LVQEKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH----------------HHHHHHHHHHhcCcEEeCCCC
Confidence 333222 1223568999999998832 23344555554211 1111
Q ss_pred ----CceEEEEecCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHhhc
Q 011935 346 ----DERIIVFTTNHK-------ERIDPALLRPGRM-DVHINMSYCTV--HGFKVLASNYLG 393 (474)
Q Consensus 346 ----~~~iiI~tTN~~-------~~Ld~aLlrpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 393 (474)
.++-||+||+.. ..+.+.|.. || ...|++|+... ++...|+.+|+.
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 135667777653 345566776 77 45677766543 335666777664
No 184
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.94 E-value=4.7e-08 Score=97.05 Aligned_cols=66 Identities=30% Similarity=0.428 Sum_probs=50.3
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC--CcEEEEeccccc
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR--FDIYDLELTSIY 283 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~--~~~~~l~~~~~~ 283 (474)
.=|.++|+.+.++..-=.++ ..+ -|+-..+|+|+.||||||||.||-+||++|| .||..++.+.++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~-mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVK-MIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred cCCcccchHHHHHhhhHHHH-HHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 34678999998886533333 222 2445678999999999999999999999996 577777777776
No 185
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.94 E-value=1.2e-08 Score=102.51 Aligned_cols=66 Identities=30% Similarity=0.436 Sum_probs=45.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC--CcEEEEeccccc
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR--FDIYDLELTSIY 283 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~--~~~~~l~~~~~~ 283 (474)
..+.++|+.+.++..--.++ ..+. |+-..+++||.||||||||.||-+||++|| .||..++.++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~-mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVD-MIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHH-HHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHH-HHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 35789999999998754444 3322 334568999999999999999999999996 567777666665
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.94 E-value=5e-09 Score=106.31 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=96.1
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHHH
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLRR 290 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~ 290 (474)
++|.....+.+.+.+..... ....+||+|++||||+++|++|.... +.+++.+||..+. +..+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~-~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS-ENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC-hHHHHH
Confidence 46777778888777776642 24679999999999999999998765 4689999999874 333332
Q ss_pred -HH-----------------HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-cC------CC
Q 011935 291 -IL-----------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-SS------CG 345 (474)
Q Consensus 291 -l~-----------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~~------~~ 345 (474)
+| ....+.++|||||||.+.. .....|+..++.-. .. ..
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~----------------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL----------------LVQEKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH----------------HHHHHHHHHHHcCcEEecCCCceec
Confidence 22 1223578999999998832 22344555553211 11 11
Q ss_pred CceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCC--HHHHHHHHHHhhc
Q 011935 346 DERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCT--VHGFKVLASNYLG 393 (474)
Q Consensus 346 ~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~--~~~~~~l~~~~l~ 393 (474)
.++-+|++||.. ..+.+.|.. |+. ..|++|+.. .++...|+.+|+.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 235677777643 234556666 664 466676655 3456667777664
No 187
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.94 E-value=5.9e-09 Score=95.59 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=61.8
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHHH
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLRR 290 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~ 290 (474)
|+|.+...+.+++.+..... .+..+||+|++||||+.+|++|.+.. +.+++.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 57788888888888876653 34789999999999999999999865 46899999998843322233
Q ss_pred HHH-----------------hhcCCcEEEEecccccc
Q 011935 291 ILL-----------------STTNRSILVIEDVDCSV 310 (474)
Q Consensus 291 l~~-----------------~~~~~sIl~iDeiD~l~ 310 (474)
+|- +..+.++||||||+.+.
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhH
Confidence 442 12356899999999984
No 188
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.93 E-value=1.5e-08 Score=111.91 Aligned_cols=91 Identities=20% Similarity=0.167 Sum_probs=69.5
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecccccCh
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIYSN 285 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~~~ 285 (474)
.+|++++|.+...+.+.+.+...... ...+||+|++||||+++|++|.+... .+++.+||..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 35889999999999888888766532 35799999999999999999998753 68999999998532
Q ss_pred hHHHHHHHh--------------hcCCcEEEEecccccc
Q 011935 286 SDLRRILLS--------------TTNRSILVIEDVDCSV 310 (474)
Q Consensus 286 ~~l~~l~~~--------------~~~~sIl~iDeiD~l~ 310 (474)
.-...+|.. ..++++||||||+.+-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~ 429 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS 429 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC
Confidence 212234321 2356899999999883
No 189
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=4.3e-09 Score=112.96 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=83.9
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE----ecccccChhHHHH----------HHHhhcCCcEEEEeccccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL----ELTSIYSNSDLRR----------ILLSTTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l----~~~~~~~~~~l~~----------l~~~~~~~sIl~iDeiD~l~~~~ 313 (474)
++||+|+||||||.+++++++......+.. ++..+.. ..++. -.....+.++++|||+|.+-.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~-- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD-- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCH--
Confidence 699999999999999999999876544432 2211210 00111 001123578999999998732
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCc---------ccCCCCceEEEEecCCCC-------------CCCccccCCCccc
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHKE-------------RIDPALLRPGRMD 371 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~---------~~~~~~~~iiI~tTN~~~-------------~Ld~aLlrpGRfd 371 (474)
...+.|+..|+.- ...-.....||+|+|..+ .|++++++ |||
T Consensus 315 --------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 315 --------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred --------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 2345556655421 111123457888999653 58999999 999
Q ss_pred eEEE-eCCCCHHHHHHHHHHhhcc
Q 011935 372 VHIN-MSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 372 ~~I~-~~~p~~~~~~~l~~~~l~~ 394 (474)
.... +++|+.+...+|+++.+..
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHHHh
Confidence 8554 4899999999999886643
No 190
>PRK08181 transposase; Validated
Probab=98.90 E-value=4.7e-09 Score=103.25 Aligned_cols=94 Identities=23% Similarity=0.362 Sum_probs=63.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC-------hhHHHHHHHhhcCCcEEEEeccccccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS-------NSDLRRILLSTTNRSILVIEDVDCSVEMKDR 315 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~ 315 (474)
..+++|+||||||||+|+.|+|+++ |..++.++..++.. +..+.+.+....+..+|+|||++....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~---- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK---- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC----
Confidence 4689999999999999999999865 66777776655532 123445555666788999999987632
Q ss_pred CCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 316 QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 316 ~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
.......+..+++..- .. .-+|+|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~---~~----~s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARY---ER----RSILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHH---hC----CCEEEEcCCC
Confidence 1222344555555432 21 2478899865
No 191
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-08 Score=98.48 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=52.6
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
-|+|+++.|+.+.-.+..-..+...-..+. --.|+++|+.||.|+|||.+|+.+|+-.+.||+.+..+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 378999999998766664443332222221 1247899999999999999999999999999998876554
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.7e-09 Score=106.44 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=99.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe-ccccc------ChhHHHHHHHhhc--CCcEEEEeccccccccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE-LTSIY------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDR 315 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~-~~~~~------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~ 315 (474)
+-.++||+||||+|||+||..+|...++|++.+- ..++. ....+++.|.++. .-+||++|||+.+++..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-- 614 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-- 614 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--
Confidence 3457999999999999999999999999998763 22332 2356788898885 35899999999997522
Q ss_pred CCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCc-cccCCCccceEEEeCCCCH-HHHHHHHHHh
Q 011935 316 QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRPGRMDVHINMSYCTV-HGFKVLASNY 391 (474)
Q Consensus 316 ~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~-aLlrpGRfd~~I~~~~p~~-~~~~~l~~~~ 391 (474)
.-++..+..++..|+..+..... .|...+|++||...+-|.. .++. .|+..|++|..+. ++..+++...
T Consensus 615 ----pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 615 ----PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred ----ccCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHHc
Confidence 12256778888888888876432 2334556667766554432 4555 8999999998876 5666666543
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=1.4e-08 Score=110.69 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=88.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC--cEEEEecccc----cChhHHHHHHH-----------hhcCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTSI----YSNSDLRRILL-----------STTNRSILVIEDVDCS 309 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~~----~~~~~l~~l~~-----------~~~~~sIl~iDeiD~l 309 (474)
.++||.|+||||||++++++++.+.. +++.+.+... .+.-.+...+. ...+.++||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998764 4776664211 11112221111 1134579999999988
Q ss_pred ccccccCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCCC---CCCccccCCCccceEEEeC
Q 011935 310 VEMKDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHKE---RIDPALLRPGRMDVHINMS 377 (474)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~~---~Ld~aLlrpGRfd~~I~~~ 377 (474)
- ..+.+.|+..|+. ..........||+|+|..+ .|.++|+. ||+.+|.+.
T Consensus 97 ~----------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 97 D----------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred C----------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 3 2455667777752 1111223467888888765 79999999 999999987
Q ss_pred CC-CHHHHHHHHHHhh
Q 011935 378 YC-TVHGFKVLASNYL 392 (474)
Q Consensus 378 ~p-~~~~~~~l~~~~l 392 (474)
++ +.+++.+|+++++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 65 5666899998876
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3.2e-08 Score=99.74 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=93.2
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC------------------------cEEEEecc--cccChhHHHHHHHhhc--
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF------------------------DIYDLELT--SIYSNSDLRRILLSTT-- 296 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~------------------------~~~~l~~~--~~~~~~~l~~l~~~~~-- 296 (474)
.+.++||+||+|+||+++|+++|+.+-. +++.+... ....-+.++.+.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4568999999999999999999987622 24444321 1124566776655432
Q ss_pred ----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccce
Q 011935 297 ----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDV 372 (474)
Q Consensus 297 ----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~ 372 (474)
..-|++||++|.+. ...-+.||..++. ++.+.++|++|++++.|.|.+++ |+ .
T Consensus 103 ~~~g~~KV~iI~~a~~m~----------------~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT----------------EAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred cccCCceEEEEechhhhC----------------HHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 24599999999883 3456788888875 45678999999999999999998 88 5
Q ss_pred EEEeCCCCHHHHHHHHHHh
Q 011935 373 HINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 373 ~I~~~~p~~~~~~~l~~~~ 391 (474)
.+.|+.|+.++..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7899999999887766654
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.81 E-value=6e-08 Score=99.74 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=98.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----CcEEEEe
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FDIYDLE 278 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~~~~l~ 278 (474)
...+..+|++++..+.-.... ......... .|. ....++||||.|.|||+|++|++++.. ..++.+.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~-aa~~~va~~------~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAY-AAAKAVAEN------PGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHH-HHHHHHHhc------cCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 355666899977554433322 112222211 122 345689999999999999999999873 2344444
Q ss_pred cccccChhHHH-------HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 279 LTSIYSNSDLR-------RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 279 ~~~~~~~~~l~-------~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
...... .-+. .-|.+..+--+++||||+.+.+ ....+..+..++|.+-. . ++ -||
T Consensus 151 se~f~~-~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g-----------k~~~qeefFh~FN~l~~---~--~k-qIv 212 (408)
T COG0593 151 SEDFTN-DFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG-----------KERTQEEFFHTFNALLE---N--GK-QIV 212 (408)
T ss_pred HHHHHH-HHHHHHHhhhHHHHHHhhccCeeeechHhHhcC-----------ChhHHHHHHHHHHHHHh---c--CC-EEE
Confidence 333321 1111 1122222445999999999864 12224445555555532 2 22 444
Q ss_pred EecC-CCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTN-HKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN-~~~~---Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+|+. .|.. ++|.|.+ ||. ..+.+..|+.+.+..++.......
T Consensus 213 ltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 213 LTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred EEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 5554 5544 4588888 877 478899999999999999865544
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=6.2e-08 Score=98.42 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=93.3
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC------------------------cEEEEecc---cccChhHHHHHHHhhc-
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF------------------------DIYDLELT---SIYSNSDLRRILLSTT- 296 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~------------------------~~~~l~~~---~~~~~~~l~~l~~~~~- 296 (474)
.+.++||+||+|+||+++|.++|..+-. +++.+... ....-+.++.+.....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 4668999999999999999999987721 34444322 1124566776665442
Q ss_pred -----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccc
Q 011935 297 -----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 371 (474)
Q Consensus 297 -----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd 371 (474)
..-|++||++|++. ...-+.||..++. ++.+.++|++|++++.|.|.+++ |+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~----------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT----------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred ccccCCceEEEEcchHhhC----------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 34599999999883 2456788888875 45678999999999999999999 986
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 011935 372 VHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~ 390 (474)
.+.|+.|+.++....+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -cccCCCCCHHHHHHHHHH
Confidence 689999999888776654
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8.8e-08 Score=96.37 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC-----------------------CcEEEEeccc---ccChhHHHHHHHhhc-
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR-----------------------FDIYDLELTS---IYSNSDLRRILLSTT- 296 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~-----------------------~~~~~l~~~~---~~~~~~l~~l~~~~~- 296 (474)
..+.++||+||+|+||+++|.++|+.+- -+++.+.... ....+.++.+.....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 3466899999999999999999998762 2455554421 124456666544332
Q ss_pred -----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccc
Q 011935 297 -----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 371 (474)
Q Consensus 297 -----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd 371 (474)
..-|++||++|.+. ...-+.||..++. ++.+.++|++|++++.|.|.+++ |+
T Consensus 103 ~~~~~~~kV~iI~~ae~m~----------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S--RC- 159 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN----------------ESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS--RC- 159 (319)
T ss_pred CcccCCceEEEecchhhhC----------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--cc-
Confidence 24699999999883 3456788888875 45678999999999999999999 98
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 011935 372 VHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~ 390 (474)
..+.|+.|+.++..+.+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eeEeCCCCCHHHHHHHHHH
Confidence 4889999999987776654
No 198
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.80 E-value=9e-08 Score=102.27 Aligned_cols=208 Identities=18% Similarity=0.277 Sum_probs=119.7
Q ss_pred CCCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 197 GGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 197 ~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
...|- ....|.+.++|+......++|...+...+. +..+.+-+||+||||||||++++++|++++..+..
T Consensus 6 ~~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 34674 467899999999998888888777765432 33445667899999999999999999999987765
Q ss_pred E-eccccc----------C-----h------hHHHHH-HHh-------------hcCCcEEEEecccccccccccCCCCC
Q 011935 277 L-ELTSIY----------S-----N------SDLRRI-LLS-------------TTNRSILVIEDVDCSVEMKDRQNDGA 320 (474)
Q Consensus 277 l-~~~~~~----------~-----~------~~l~~l-~~~-------------~~~~sIl~iDeiD~l~~~~~~~~~~~ 320 (474)
- +..... + . ...... +.. ..++.||+|||+-.++.
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~--------- 146 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH--------- 146 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc---------
Confidence 3 222210 0 0 011111 110 02467999999976643
Q ss_pred CCCCchhhHHhhHHhhhcCcccCCCC-ceEEEEe-c------CCCC--------CCCccccCCCccceEEEeCCCCHHHH
Q 011935 321 SVGSNTKLTLSGILNFIDGLWSSCGD-ERIIVFT-T------NHKE--------RIDPALLRPGRMDVHINMSYCTVHGF 384 (474)
Q Consensus 321 ~~~~~~~~~l~~LL~~idg~~~~~~~-~~iiI~t-T------N~~~--------~Ld~aLlrpGRfd~~I~~~~p~~~~~ 384 (474)
......-..|..++.. ... .+|||+| + |... -+++.++...++ .+|.|.+-...-.
T Consensus 147 ---~~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~m 218 (519)
T PF03215_consen 147 ---RDTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFM 218 (519)
T ss_pred ---hhHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHH
Confidence 1112222223333332 112 4666666 1 1111 345666654445 4789999888887
Q ss_pred HHHHHHhhcccCCCCCcHHHHHhhhcCCCC--CHHHHHHHHhc--cCCHHHHHHHHHHHHH
Q 011935 385 KVLASNYLGIKGKSHSLFGEIEGLIQSTDV--TPAEVAEELMK--ADDADVALEGLVNFLK 441 (474)
Q Consensus 385 ~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~--tpa~i~~~l~~--~~~~~~al~~l~~~l~ 441 (474)
++.+.+...... ... ..... .+.++.+.+.. .+|.+.|+..|.=+..
T Consensus 219 kKaL~rI~~~E~---------~~~-~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 219 KKALKRILKKEA---------RSS-SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHHh---------hhh-cCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 777777654320 001 11111 22444444443 3677777766654443
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.79 E-value=3.2e-08 Score=100.12 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=64.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh---------hHHHHHHHhhcCCcEEEEeccccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN---------SDLRRILLSTTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~---------~~l~~l~~~~~~~sIl~iDeiD~l~~~~ 313 (474)
..+++||||||||||+|+.|||+++ +..++.++..++... ......+......-+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~-- 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI-- 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC--
Confidence 3789999999999999999999987 667777776665311 11122234445668999999976532
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC-CC----CCccccC
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-ER----IDPALLR 366 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-~~----Ld~aLlr 366 (474)
.......+..+++.. .. .+.-+|+|||.+ +. +++.+..
T Consensus 261 ---------t~~~~~~Lf~iin~R---~~---~~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 261 ---------TEFSKSELFNLINKR---LL---RQKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred ---------CHHHHHHHHHHHHHH---HH---CCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 122233344444432 21 124477888854 32 4555555
No 200
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.79 E-value=3.1e-08 Score=106.20 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LRFDIYDL 277 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~-----------l~~~~~~l 277 (474)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+.+|++|.+. .+.+++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999999999998888766432 368999999999999999999887 45699999
Q ss_pred ecccccChhHHHHH-H------------------HhhcCCcEEEEecccccc
Q 011935 278 ELTSIYSNSDLRRI-L------------------LSTTNRSILVIEDVDCSV 310 (474)
Q Consensus 278 ~~~~~~~~~~l~~l-~------------------~~~~~~sIl~iDeiD~l~ 310 (474)
||+.+.. ..+... | .+....+.||||||+.+.
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 9998853 333222 2 112346799999999883
No 201
>PRK06526 transposase; Provisional
Probab=98.77 E-value=7.5e-09 Score=101.16 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=45.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC-------hhHHHHHHHhhcCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS-------NSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
+.+++|+||||||||+|+.+|+.++ |..++.....++.. ...+...+....+..+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999875 55555554443321 1123344445556789999999876
No 202
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=9.4e-08 Score=96.23 Aligned_cols=123 Identities=15% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC---------------------cEEEEe--cccc-------cChhHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF---------------------DIYDLE--LTSI-------YSNSDLRRILLS 294 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~---------------------~~~~l~--~~~~-------~~~~~l~~l~~~ 294 (474)
.+.++||+||+|+||+++|.++|+.+-. +++.++ ...- ..-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4568999999999999999999986621 244442 1110 123456665544
Q ss_pred hc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCC
Q 011935 295 TT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPG 368 (474)
Q Consensus 295 ~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpG 368 (474)
.. ..-|++||++|.+. ...-+.||..++. ++.+.++|++|+.++.|.|.+++
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~----------------~~AaNaLLKtLEE----Pp~~~~fiL~~~~~~~lLpTIrS-- 162 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN----------------RAACNALLKTLEE----PSPGRYLWLISAQPARLPATIRS-- 162 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC----------------HHHHHHHHHHhhC----CCCCCeEEEEECChhhCchHHHh--
Confidence 32 23599999999883 2446788888875 34568889999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHH
Q 011935 369 RMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 369 Rfd~~I~~~~p~~~~~~~l~~~ 390 (474)
|+ ..|.|+.|+.++....+..
T Consensus 163 RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hh-eEeeCCCcCHHHHHHHHHH
Confidence 98 5789999999887766654
No 203
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.77 E-value=3.8e-08 Score=105.52 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=100.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~ 283 (474)
...+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.+++.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999999999998888766432 3689999999999999999998764 5689999999884
Q ss_pred ChhHHHH-HHH------------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-cC
Q 011935 284 SNSDLRR-ILL------------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-SS 343 (474)
Q Consensus 284 ~~~~l~~-l~~------------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~~ 343 (474)
. ..+.. +|. +....+.||||||+.+.. .....|+..++.-. ..
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~----------------~~Q~~Ll~~L~~~~~~r 338 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL----------------PLQTRLLRVLEEREVVR 338 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH----------------HHHHHHHHHHhcCcEEe
Confidence 2 33332 221 223467999999998832 22344555553210 00
Q ss_pred CC------CceEEEEecCCC-C-CC-----CccccCCCccc-eEEEeCCCCH--HHHHHHHHHhhcc
Q 011935 344 CG------DERIIVFTTNHK-E-RI-----DPALLRPGRMD-VHINMSYCTV--HGFKVLASNYLGI 394 (474)
Q Consensus 344 ~~------~~~iiI~tTN~~-~-~L-----d~aLlrpGRfd-~~I~~~~p~~--~~~~~l~~~~l~~ 394 (474)
.| -++-+|++||.. . .+ .+.|.. |+. ..|++|+... ++...|+.+|+..
T Consensus 339 ~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 339 VGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred cCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 01 123466776653 2 12 223333 443 4666766543 3466677777754
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.76 E-value=4.7e-08 Score=95.58 Aligned_cols=91 Identities=25% Similarity=0.506 Sum_probs=60.1
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh--
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN-- 285 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~-- 285 (474)
+.++-+.+...+.....+..+. ++|. -+.+++||||||||||+|+.|||+++ |..++.+..+++...
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3344455555555544444443 2222 35799999999999999999999987 677888887776521
Q ss_pred -----hHHH-HHHHhhcCCcEEEEeccccc
Q 011935 286 -----SDLR-RILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 286 -----~~l~-~l~~~~~~~sIl~iDeiD~l 309 (474)
.... ++.....+.-+|+|||+-..
T Consensus 150 ~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 150 AAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 1111 22333566789999999765
No 205
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.75 E-value=1.1e-08 Score=90.53 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=56.3
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC---cEEEEecccccChhHHHHH
Q 011935 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF---DIYDLELTSIYSNSDLRRI 291 (474)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~---~~~~l~~~~~~~~~~l~~l 291 (474)
+|.....+++.+.+..... ....+||+|+|||||+++|++|....+. +++.++|.... .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~ 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AEL 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHH
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHH
Confidence 4666777888887776643 2467999999999999999999987754 45555666543 334
Q ss_pred HHhhcCCcEEEEecccccc
Q 011935 292 LLSTTNRSILVIEDVDCSV 310 (474)
Q Consensus 292 ~~~~~~~sIl~iDeiD~l~ 310 (474)
+.. ..++.|+|+|||.+.
T Consensus 65 l~~-a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 65 LEQ-AKGGTLYLKNIDRLS 82 (138)
T ss_dssp HHH-CTTSEEEEECGCCS-
T ss_pred HHH-cCCCEEEECChHHCC
Confidence 444 378899999999983
No 206
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=4e-08 Score=100.74 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=124.8
Q ss_pred HHhhhHHHHHHHHHHHhcccEEEEeecCCCCCCCCCCCCCCCCCcc-cccCCCCCCcccccChhHHHHHHHHHHHHHhhH
Q 011935 157 ICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGS-INLEHPSTFDTLAMDPELKQMILDDLDRFLRRK 235 (474)
Q Consensus 157 l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~ 235 (474)
...++..+.......+...+.+.......++.. ........-.. -.......+++|+|....-+++++.++.+-
T Consensus 24 vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~LIG~~~~~~~~~eqik~~a--- 98 (403)
T COG1221 24 VSHELNGLGREGDLAKINGRPVIFLPSEAFSMS--ELTELQALLPQARPYLKSEALDDLIGESPSLQELREQIKAYA--- 98 (403)
T ss_pred hHHHHHhhhhhhhHHHhcCCCchhHHHHHhhhh--hhhhhhhcccchhhhccchhhhhhhccCHHHHHHHHHHHhhC---
Confidence 345566677777777776666633322221100 00000000000 012234568999999999999999888731
Q ss_pred HHHHHhCCCCCccceecCCCCCcHHHHHHHHHHH----hCCcEEEEecccccChhHHHHHHHh-----------------
Q 011935 236 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY----LRFDIYDLELTSIYSNSDLRRILLS----------------- 294 (474)
Q Consensus 236 ~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~----l~~~~~~l~~~~~~~~~~l~~l~~~----------------- 294 (474)
+....+|++|++||||+.+|++|... .+.+++.+||+.+..+.....+|-.
T Consensus 99 --------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe 170 (403)
T COG1221 99 --------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFE 170 (403)
T ss_pred --------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchhe
Confidence 33467999999999999999999743 3668999999999876666666532
Q ss_pred hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-ccc------CCCCceEEEEecC-CC-CCCCc--c
Q 011935 295 TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-LWS------SCGDERIIVFTTN-HK-ERIDP--A 363 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-~~~------~~~~~~iiI~tTN-~~-~~Ld~--a 363 (474)
..+.++||+|||..+-. ..+ ..|+..+|. .+. ....++-+|++|| .+ +.+-. .
T Consensus 171 ~A~GGtLfLDEI~~LP~-------------~~Q---~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~d 234 (403)
T COG1221 171 QANGGTLFLDEIHRLPP-------------EGQ---EKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGAD 234 (403)
T ss_pred ecCCCEEehhhhhhCCH-------------hHH---HHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcc
Confidence 13468999999998832 223 345555542 111 1223455666665 33 22222 3
Q ss_pred cc-CCCccceEEEeCCCCH--HHHHHHHHHhhcc
Q 011935 364 LL-RPGRMDVHINMSYCTV--HGFKVLASNYLGI 394 (474)
Q Consensus 364 Ll-rpGRfd~~I~~~~p~~--~~~~~l~~~~l~~ 394 (474)
|. | |+...|++|+... .++..++++|+..
T Consensus 235 l~~r--l~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 235 LTRR--LNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred hhhh--hcCceecCCChhhchhhHHHHHHHHHHH
Confidence 43 4 6777777776553 3356677777654
No 207
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.74 E-value=1.3e-07 Score=101.92 Aligned_cols=157 Identities=14% Similarity=0.241 Sum_probs=97.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~ 283 (474)
...+|++++|.+...+.+.+.+..... ....+||+|++||||+++|+++.... +.+++.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 345799999999988888887775533 23579999999999999999987654 3589999999875
Q ss_pred ChhHHH-HHHH-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-cccCC
Q 011935 284 SNSDLR-RILL-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-LWSSC 344 (474)
Q Consensus 284 ~~~~l~-~l~~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-~~~~~ 344 (474)
. ..+. .+|. +..+.+.|||||||.+.. ..+ ..|++++.. .....
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-------------~~Q---~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-------------RMQ---AKLLRFLNDGTFRRV 330 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-------------HHH---HHHHHHHhcCCcccC
Confidence 3 2232 2231 123468899999998832 222 344555532 11111
Q ss_pred C------CceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHhhc
Q 011935 345 G------DERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCTV--HGFKVLASNYLG 393 (474)
Q Consensus 345 ~------~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 393 (474)
| .++-||+||+.. ..+.+.|.. |+. ..|++|+... ++...|+..|+.
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 1 124566666643 223445555 654 4555555443 234556666654
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.73 E-value=9e-09 Score=95.31 Aligned_cols=64 Identities=27% Similarity=0.554 Sum_probs=47.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc-------ChhHHHHHHHhhcCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY-------SNSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~-------~~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
+.|++|+||||||||+||.|+|+++ |..+..++..++. ......+.+.......+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 5789999999999999999999876 7778888777664 22334455666667889999999643
No 209
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=6.1e-08 Score=98.11 Aligned_cols=124 Identities=13% Similarity=0.202 Sum_probs=89.3
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC-------------------------CcEEEEeccc----------ccChhHH
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR-------------------------FDIYDLELTS----------IYSNSDL 288 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~-------------------------~~~~~l~~~~----------~~~~~~l 288 (474)
..+.++||+||+|+|||++|+++|+.+. -+++.++... -..-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3466899999999999999999998763 2455565421 1134566
Q ss_pred HHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCc
Q 011935 289 RRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 362 (474)
Q Consensus 289 ~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~ 362 (474)
+.+...+. ..-|++||+++.+- ....+.|+..++... .+..+|++|++++.+.|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN----------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC----------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChH
Confidence 77665543 34589999999883 233456666666532 34668889999999999
Q ss_pred cccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 363 ALLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 363 aLlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
.+.+ |+ ..+.|+.|+.++....+..
T Consensus 159 ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 159 TIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 9988 88 5789999999987766643
No 210
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.67 E-value=4.6e-08 Score=96.62 Aligned_cols=138 Identities=24% Similarity=0.419 Sum_probs=78.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc---EEEEecccccChhHHHHHHHhh-------------cCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD---IYDLELTSIYSNSDLRRILLST-------------TNRSILVIEDVDCS 309 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~---~~~l~~~~~~~~~~l~~l~~~~-------------~~~sIl~iDeiD~l 309 (474)
.+.+||+||+|||||++++..-..+.-. +..++++...+...+.+++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4789999999999999998876665433 3345555544444454444321 13479999999855
Q ss_pred ccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC------CceEEEEecCCC---CCCCccccCCCccceEEEeCCCC
Q 011935 310 VEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG------DERIIVFTTNHK---ERIDPALLRPGRMDVHINMSYCT 380 (474)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~------~~~iiI~tTN~~---~~Ld~aLlrpGRfd~~I~~~~p~ 380 (474)
.. +.-+ ....-..|.++++. .|.+.... .++.+|+++|.. ..+++.++| .| ..+.+++|+
T Consensus 113 ~~--d~yg-----tq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~ 181 (272)
T PF12775_consen 113 QP--DKYG-----TQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPS 181 (272)
T ss_dssp -----TTS-------HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----T
T ss_pred CC--CCCC-----CcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCC
Confidence 32 1100 00111223333322 24443321 245677887753 247788888 77 478999999
Q ss_pred HHHHHHHHHHhhcc
Q 011935 381 VHGFKVLASNYLGI 394 (474)
Q Consensus 381 ~~~~~~l~~~~l~~ 394 (474)
.+....|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99988888877653
No 211
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.67 E-value=1.1e-06 Score=85.30 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=43.4
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC--CcEEEEecccc
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR--FDIYDLELTSI 282 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~--~~~~~l~~~~~ 282 (474)
+.++|+...++.- ..+...++.+. -..|++||.||||||||.||-+|++++| .+|..+..+.+
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 5678988888764 23333443332 2468999999999999999999999984 34444444433
No 212
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.65 E-value=3.9e-07 Score=101.49 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=68.7
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN 285 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~ 285 (474)
..|++++|.....+.+.+.+..... ...++||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 5688999999999999988886643 23589999999999999999998865 56899999998742
Q ss_pred hHHHH-HH-----------------HhhcCCcEEEEeccccc
Q 011935 286 SDLRR-IL-----------------LSTTNRSILVIEDVDCS 309 (474)
Q Consensus 286 ~~l~~-l~-----------------~~~~~~sIl~iDeiD~l 309 (474)
..+.. +| .+...+++||||||+.+
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 11111 11 12345689999999988
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=5e-07 Score=88.72 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=72.2
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCC-cEEEEec--cccc----------------C---h----hHHHHHHHh---hcCC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRF-DIYDLEL--TSIY----------------S---N----SDLRRILLS---TTNR 298 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~-~~~~l~~--~~~~----------------~---~----~~l~~l~~~---~~~~ 298 (474)
.++|+||+|+|||++++.+++.+.. .+..... .... . . ..+...+.. ...+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998863 2221111 0110 0 0 011121211 2356
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC--CCCCCC----ccccCCCccce
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN--HKERID----PALLRPGRMDV 372 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN--~~~~Ld----~aLlrpGRfd~ 372 (474)
.+|+|||++.+.. .....+..|.+.... . +..+.||++.. ..+.+. ..+.+ |+..
T Consensus 125 ~vliiDe~~~l~~-------------~~~~~l~~l~~~~~~---~-~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------------ELLEELRMLSNFQTD---N-AKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred eEEEEECcccCCH-------------HHHHHHHHHhCcccC---C-CCeEEEEEcCCHHHHHHHcCchhHHHHh--heee
Confidence 7999999998732 112223333332111 1 12223333332 112221 23555 8888
Q ss_pred EEEeCCCCHHHHHHHHHHhhccc
Q 011935 373 HINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 373 ~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.++++..+.++...++...+...
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~ 208 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERA 208 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999998887643
No 214
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.64 E-value=7.9e-08 Score=102.41 Aligned_cols=142 Identities=17% Similarity=0.198 Sum_probs=86.8
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc--EEEEecccccC--
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD--IYDLELTSIYS-- 284 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~--~~~l~~~~~~~-- 284 (474)
..|+++.|+...++.+.-.+ .....++|.||||||||+++++++..+.-. -..++...+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999988876553322 123579999999999999999999754210 00111111100
Q ss_pred ----------------------hhH-------HHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 285 ----------------------NSD-------LRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 285 ----------------------~~~-------l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
... .+--......+++|||||++.+- ...+..|+.
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~----------------~~~~~~L~~ 317 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK----------------RSVLDALRE 317 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC----------------HHHHHHHHH
Confidence 000 01111223456899999999762 234455555
Q ss_pred hhcCcc---------cCCCCceEEEEecCCC-----C------------------CCCccccCCCccceEEEeCCCCHHH
Q 011935 336 FIDGLW---------SSCGDERIIVFTTNHK-----E------------------RIDPALLRPGRMDVHINMSYCTVHG 383 (474)
Q Consensus 336 ~idg~~---------~~~~~~~iiI~tTN~~-----~------------------~Ld~aLlrpGRfd~~I~~~~p~~~~ 383 (474)
.|+.-. .....+..+|+++|.- + ++...|+. |||.++.++.++.++
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 553210 0112346788888842 1 57788889 999999999987664
No 215
>PRK06921 hypothetical protein; Provisional
Probab=98.64 E-value=2e-07 Score=91.83 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=44.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh----CCcEEEEecccccCh-----hHHHHHHHhhcCCcEEEEecccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTSIYSN-----SDLRRILLSTTNRSILVIEDVDC 308 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~~~~~-----~~l~~l~~~~~~~sIl~iDeiD~ 308 (474)
..+++|+||||||||+|+.|||+++ +..++.+...++... ..+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999986 556666665544211 11222334445678999999954
No 216
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.63 E-value=3e-07 Score=88.58 Aligned_cols=175 Identities=23% Similarity=0.246 Sum_probs=97.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGS 324 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~ 324 (474)
..|-.++||+|||||..++++|..+|..++.++|++..+...+.++|..+. ..+-+++||++++-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 456789999999999999999999999999999999999999999997765 589999999998832
Q ss_pred chhhHHhhHHhhh-cCcccCC------C------CceEEEEecC----CCCCCCccccCCCccceEEEeCCCCHHHHHHH
Q 011935 325 NTKLTLSGILNFI-DGLWSSC------G------DERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVL 387 (474)
Q Consensus 325 ~~~~~l~~LL~~i-dg~~~~~------~------~~~iiI~tTN----~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l 387 (474)
..-..+++.+..+ +.+.... + .+.-++.|.| ....||+.|.. +-+-|.|..||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHH
Confidence 1111222222222 1111000 0 1123455666 23568877765 447889999998876655
Q ss_pred HHHhhcccCCCCCcHHHHHhhhcCCCCCHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Q 011935 388 ASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM-KADDADVALEGLVNFLKRKRI 445 (474)
Q Consensus 388 ~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~-~~~~~~~al~~l~~~l~~~~~ 445 (474)
.-.-.+... ...+...+..+.. +...++ +...-+..|+.+...|..+..
T Consensus 176 ~L~s~GF~~-a~~La~kl~~l~~--------l~~~~lS~q~hydfgLRalk~vl~~a~~ 225 (231)
T PF12774_consen 176 LLLSQGFKD-AKSLAKKLVSLFQ--------LCKEQLSKQDHYDFGLRALKSVLRMAGS 225 (231)
T ss_dssp HHHCCCTSS-HHHHHHHHHHHHH--------HHHHCS-SSTT---SHHHHHHHHHHHHH
T ss_pred HHHHcCchh-HHHHHHHHHHHHH--------HHHHhhccCccccccHHHHHHHHHHHHH
Confidence 544443221 2233333333322 223223 223455667777666665544
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.61 E-value=4.3e-07 Score=97.68 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=98.1
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChh
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNS 286 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 286 (474)
.+++++|.....+.+.+.+..... .+..+||+|++||||+.+|++|.... +.+++.+||..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 468899999999999998886543 24689999999999999999999875 46899999998853 2
Q ss_pred HHH-HHHH-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-cC----
Q 011935 287 DLR-RILL-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-SS---- 343 (474)
Q Consensus 287 ~l~-~l~~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~~---- 343 (474)
.+. .+|. +..+++.|||||||.+.. .....|+..++.-. ..
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~----------------~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL----------------ALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH----------------HHHHHHHHHHhcCCEeeCCCC
Confidence 222 2221 123567899999998832 22344555553211 00
Q ss_pred --CCCceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHhhc
Q 011935 344 --CGDERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCTV--HGFKVLASNYLG 393 (474)
Q Consensus 344 --~~~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 393 (474)
...++-||++||.. ..+.+.|.. |+. ..|++|+... ++...|+.+|+.
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 01134567777653 234444444 543 3466655442 234566666654
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.60 E-value=7.3e-08 Score=81.61 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=39.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSV 310 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~ 310 (474)
+.||||||+|||++++.||..+.-.+-......+.....-.+.+..-....++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 57999999999999999998775333111111221111122344445567899999998663
No 219
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=2e-07 Score=81.45 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=71.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC--CcEEEEecccccChh----HHHHHHHhh--cCCcEEEEecccccccccccCCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR--FDIYDLELTSIYSNS----DLRRILLST--TNRSILVIEDVDCSVEMKDRQND 318 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~--~~~~~l~~~~~~~~~----~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~ 318 (474)
+.++|+||+|+|||++++.+++.+. .++..+++.+..... ++.+.+.+. .++.+||||||+.+-+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~------- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD------- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc-------
Confidence 4678999999999999999998886 778888877664221 133444443 3578999999987721
Q ss_pred CCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCC----CccccCCCccceEEEeCCCCHHHH
Q 011935 319 GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI----DPALLRPGRMDVHINMSYCTVHGF 384 (474)
Q Consensus 319 ~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~L----d~aLlrpGRfd~~I~~~~p~~~~~ 384 (474)
....+..+.+. . .+.-+|+|+.....+ ...+ +||.. .+++.+.+..++
T Consensus 76 -------~~~~lk~l~d~-------~-~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 -------WEDALKFLVDN-------G-PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFREF 127 (128)
T ss_pred -------HHHHHHHHHHh-------c-cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHHh
Confidence 22223333331 1 223344444433222 2333 56885 788988888764
No 220
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.57 E-value=5.8e-07 Score=91.70 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=103.3
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEec---------
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL--------- 279 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~--------- 279 (474)
-.|..++|++..|..|...... |--.|+|+-|+.|||||++++|||.-|.--.....|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4578899999999988654331 234689999999999999999999987321111111
Q ss_pred -----------------------------ccccChh------HHHHHHHh-----------hcCCcEEEEeccccccccc
Q 011935 280 -----------------------------TSIYSNS------DLRRILLS-----------TTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 280 -----------------------------~~~~~~~------~l~~l~~~-----------~~~~sIl~iDeiD~l~~~~ 313 (474)
....++. ++.+.+.. ..+++||+|||+..+-+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH--
Confidence 0000111 12222221 13578999999987732
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhh---------cCcccCCCCceEEEEecCCC-CCCCccccCCCccceEEEeCCCC-HH
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFI---------DGLWSSCGDERIIVFTTNHK-ERIDPALLRPGRMDVHINMSYCT-VH 382 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~i---------dg~~~~~~~~~iiI~tTN~~-~~Ld~aLlrpGRfd~~I~~~~p~-~~ 382 (474)
.....||+.+ +|+.-....++++|+|+|.- ..|=|-|+. ||...|.+.+|. .+
T Consensus 159 --------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 159 --------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred --------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 3345555554 34444445568999999954 678899999 999999997664 66
Q ss_pred HHHHHHHHhhcc
Q 011935 383 GFKVLASNYLGI 394 (474)
Q Consensus 383 ~~~~l~~~~l~~ 394 (474)
++.++.++-...
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 688888876654
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=98.56 E-value=1.4e-07 Score=92.69 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=45.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC-------hhHHHHHHHh-hcCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS-------NSDLRRILLS-TTNRSILVIEDVDCS 309 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~-------~~~l~~l~~~-~~~~sIl~iDeiD~l 309 (474)
..+++|+||||||||+|+.++|..+ |..+..++..++.. ...+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4679999999999999999998764 66676666555431 1123344444 456789999999865
No 222
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.2e-06 Score=82.16 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=81.1
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC----------------------CcEEEEecc-cccChhHHHHHHHhh---c-
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR----------------------FDIYDLELT-SIYSNSDLRRILLST---T- 296 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~----------------------~~~~~l~~~-~~~~~~~l~~l~~~~---~- 296 (474)
.++.++||+||+|+||..+|.++|..+- -+++.+... .....+.++.+.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4578899999999999999999998762 123332211 111335555554432 1
Q ss_pred ---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceE
Q 011935 297 ---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVH 373 (474)
Q Consensus 297 ---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~ 373 (474)
..-|++|+++|.+. ....+.||..++. ++.+.++|++|+.++.+.|.+++ |+. .
T Consensus 85 e~~~~KV~II~~ae~m~----------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~ 141 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS--RCV-Q 141 (261)
T ss_pred hcCCCEEEEeccHhhhC----------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--hee-e
Confidence 24699999999883 3456888888875 45678999999999999999999 984 4
Q ss_pred EEeCCC
Q 011935 374 INMSYC 379 (474)
Q Consensus 374 I~~~~p 379 (474)
+.++.+
T Consensus 142 ~~~~~~ 147 (261)
T PRK05818 142 YVVLSK 147 (261)
T ss_pred eecCCh
Confidence 667766
No 223
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.54 E-value=1.5e-07 Score=99.93 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=87.2
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc--EEEEecccccC---
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD--IYDLELTSIYS--- 284 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~--~~~l~~~~~~~--- 284 (474)
.|..+.|....++.+.-. ......++|+||||||||++++.++..+.-. -..++.+.+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 677778876666543211 1234579999999999999999999866311 01112111110
Q ss_pred ------------------hhHHHHH----------HHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhh
Q 011935 285 ------------------NSDLRRI----------LLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNF 336 (474)
Q Consensus 285 ------------------~~~l~~l----------~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~ 336 (474)
......+ ........+|||||++.+- ..++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~----------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE----------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC----------------HHHHHHHHHH
Confidence 0011111 2233457899999998652 3456667766
Q ss_pred hcC-cc--c------CCCCceEEEEecCCCC---------------------CCCccccCCCccceEEEeCCCCHH
Q 011935 337 IDG-LW--S------SCGDERIIVFTTNHKE---------------------RIDPALLRPGRMDVHINMSYCTVH 382 (474)
Q Consensus 337 idg-~~--~------~~~~~~iiI~tTN~~~---------------------~Ld~aLlrpGRfd~~I~~~~p~~~ 382 (474)
|+. .. . ....+..+|+|+|... ++..+++. |||.++.+++++.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 632 11 1 1123568899999642 47778999 99999999999876
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2e-06 Score=95.78 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=81.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc-----
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY----- 283 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~----- 283 (474)
.|+|++++...|.+.+...... ++.+ +.-.+||.||.|+|||-||+|+|..+ .-.++.+|++.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 5788888888888877755321 1222 45568999999999999999999987 3468888888632
Q ss_pred --------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCCC-----C
Q 011935 284 --------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSCG-----D 346 (474)
Q Consensus 284 --------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~~-----~ 346 (474)
.....-++..... ..+||+|||||..- ...++.|+..+|.-. .+.| .
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh----------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH----------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC----------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 1222333333333 45999999999762 234566666666322 2222 3
Q ss_pred ceEEEEecCC
Q 011935 347 ERIIVFTTNH 356 (474)
Q Consensus 347 ~~iiI~tTN~ 356 (474)
+.|||||+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 5799999885
No 225
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=2.6e-06 Score=87.66 Aligned_cols=201 Identities=16% Similarity=0.081 Sum_probs=125.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccccC
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIYS 284 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~ 284 (474)
.=+++.|.+..+..+.+++...+... .++++.+.|-||||||.+...+-..+ ....+.++|.++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 34678899999988888777766533 35778999999999999988776544 23567888887653
Q ss_pred hhH---------------------HHHHHHhh----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC
Q 011935 285 NSD---------------------LRRILLST----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG 339 (474)
Q Consensus 285 ~~~---------------------l~~l~~~~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg 339 (474)
... ....|... ..+-++|+||+|.++.. .+.++- .+..
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr-------------~~~vLy----~lFe 281 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR-------------SQTVLY----TLFE 281 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc-------------ccceee----eehh
Confidence 211 12222222 23569999999999631 111222 2222
Q ss_pred cccCCCCceEEEEecCCCCCCCcccc----CCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCC
Q 011935 340 LWSSCGDERIIVFTTNHKERIDPALL----RPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVT 415 (474)
Q Consensus 340 ~~~~~~~~~iiI~tTN~~~~Ld~aLl----rpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~t 415 (474)
+....+..+++|+.+|..+.-|..|- |-+--...+.|++++.++..+|+...+........+...++-.
T Consensus 282 wp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~------- 354 (529)
T KOG2227|consen 282 WPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELC------- 354 (529)
T ss_pred cccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHH-------
Confidence 22334466889999998876664443 2344556889999999999999999887542111111111111
Q ss_pred HHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHH
Q 011935 416 PAEVAEEL-MKADDADVALEGLVNFLKRKRIQA 447 (474)
Q Consensus 416 pa~i~~~l-~~~~~~~~al~~l~~~l~~~~~~~ 447 (474)
|+-. ...+|.+.|++....+++....+.
T Consensus 355 ----ArKvaa~SGDlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 355 ----ARKVAAPSGDLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred ----HHHhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 1111 135688888877776666654443
No 226
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.51 E-value=3.1e-06 Score=90.78 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=104.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEecccccChhHH----------------------HHHHH-
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLELTSIYSNSDL----------------------RRILL- 293 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~~~~~~~~~~l----------------------~~l~~- 293 (474)
..+++.|-||||||..++.+-+.| .++++.+|.-.+.+..++ ..-|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 357889999999999999998866 467777776666543222 22222
Q ss_pred --hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccC---CC
Q 011935 294 --STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLR---PG 368 (474)
Q Consensus 294 --~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlr---pG 368 (474)
.-..++||+|||+|.|+. ..+.+| -|++|... ..+...+||+..|..+. ++.++- ..
T Consensus 503 ~k~~~~~~VvLiDElD~Lvt-------------r~QdVl---Yn~fdWpt-~~~sKLvvi~IaNTmdl-PEr~l~nrvsS 564 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVT-------------RSQDVL---YNIFDWPT-LKNSKLVVIAIANTMDL-PERLLMNRVSS 564 (767)
T ss_pred CCCCCCCEEEEeccHHHHhc-------------ccHHHH---HHHhcCCc-CCCCceEEEEecccccC-HHHHhccchhh
Confidence 112468999999999974 123333 34444332 22345666676665442 333221 11
Q ss_pred ccc-eEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q 011935 369 RMD-VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQA 447 (474)
Q Consensus 369 Rfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 447 (474)
|++ ..|.|.+++.+|.++|+...|... .+- ..+.-+|+. .....-.+|++.|++-..++.+.+....
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL~~~--~~f-~~~aielva---------rkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARLKGL--DAF-ENKAIELVA---------RKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhhcch--hhc-chhHHHHHH---------HHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 554 367899999999999999988643 111 111111111 0111235788888888888777766555
Q ss_pred h
Q 011935 448 D 448 (474)
Q Consensus 448 ~ 448 (474)
.
T Consensus 633 ~ 633 (767)
T KOG1514|consen 633 V 633 (767)
T ss_pred c
Confidence 4
No 227
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.4e-07 Score=97.56 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=39.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
...|.||.|++..|+.+.-... -..++||+||||||||++|+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999998854332 24789999999999999999997654
No 228
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=9.7e-07 Score=85.16 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=106.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-CCcE---------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-RFDI--------- 274 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-~~~~--------- 274 (474)
...|.+|+.+.+..+....+..... . . . -.++++|||+|+||-+.+.++-+++ |..+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~-~---~--------d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS-T---G--------D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc-c---C--------C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 4568889999888888777655322 0 0 0 1479999999999999999998876 2111
Q ss_pred -------------------EEEecccccC--hhHHHHHHHhhc---------C--CcEEEEecccccccccccCCCCCCC
Q 011935 275 -------------------YDLELTSIYS--NSDLRRILLSTT---------N--RSILVIEDVDCSVEMKDRQNDGASV 322 (474)
Q Consensus 275 -------------------~~l~~~~~~~--~~~l~~l~~~~~---------~--~sIl~iDeiD~l~~~~~~~~~~~~~ 322 (474)
+.++.++... ..-+.+++.+.. + --+++|-|+|.+.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 1222222221 122344444432 1 1489999999883
Q ss_pred CCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccC
Q 011935 323 GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG 396 (474)
Q Consensus 323 ~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 396 (474)
+....+|-..|+...+. .-+|+.+|....+-+++.. |+ ..|.+|.|+.++...++...+...+
T Consensus 141 ----~dAQ~aLRRTMEkYs~~----~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 141 ----RDAQHALRRTMEKYSSN----CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred ----HHHHHHHHHHHHHHhcC----ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 23345566667665444 4477888999999999998 87 6799999999999999988887663
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.44 E-value=3.5e-06 Score=83.29 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=86.3
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccCh
Q 011935 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSN 285 (474)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~ 285 (474)
+|.+..++ +.+.+...+..|. ..-..++||+|++|.|||++++.++... ..+++.+....--++
T Consensus 37 IgY~~A~~-~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKE-ALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHH-HHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 45555555 3455665555442 2334689999999999999999998754 245666665444333
Q ss_pred hHHHHHH------------------------HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc
Q 011935 286 SDLRRIL------------------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW 341 (474)
Q Consensus 286 ~~l~~l~------------------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~ 341 (474)
..+...+ ...-+.-+|+|||++.++... ...+ ..++|.+..+.
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----------~~~q---r~~Ln~LK~L~ 176 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----------YRKQ---REFLNALKFLG 176 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----------HHHH---HHHHHHHHHHh
Confidence 2222111 122356799999999976411 1112 23333333332
Q ss_pred cCCCCceEEEEecCC--CCCCCccccCCCccceEEEeCCCC-HHHHHHHHHHhhc
Q 011935 342 SSCGDERIIVFTTNH--KERIDPALLRPGRMDVHINMSYCT-VHGFKVLASNYLG 393 (474)
Q Consensus 342 ~~~~~~~iiI~tTN~--~~~Ld~aLlrpGRfd~~I~~~~p~-~~~~~~l~~~~l~ 393 (474)
+...-.++.|+|-.- .=.-|+-+-+ ||+. +.+|.-. -+++..++..+-.
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFER 228 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHH
Confidence 222223455554332 2234777877 9974 4555433 2346666666543
No 230
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.43 E-value=3.7e-07 Score=93.53 Aligned_cols=99 Identities=16% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhCCc-EEEEeccccc------------ChhHHHHHHHhhcCC-cEEEEecccc
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLRFD-IYDLELTSIY------------SNSDLRRILLSTTNR-SILVIEDVDC 308 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~~~-~~~l~~~~~~------------~~~~l~~l~~~~~~~-sIl~iDeiD~ 308 (474)
.+.++|++||||+|+|||+|.-...+.+... --.+....+. ....+..+.....+. .+|+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 4578999999999999999999999877541 1111111111 112233333333444 4999999974
Q ss_pred cccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC-CCC
Q 011935 309 SVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-ERI 360 (474)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-~~L 360 (474)
- +......+..|+..+=. .++++|+|+|++ +.|
T Consensus 139 ~-------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 139 T-------------DIADAMILKRLFEALFK------RGVVLVATSNRPPEDL 172 (362)
T ss_pred c-------------chhHHHHHHHHHHHHHH------CCCEEEecCCCChHHH
Confidence 4 23345677778776632 458999999964 444
No 231
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.43 E-value=1.2e-06 Score=86.27 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=100.1
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc------EEE
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD------IYD 276 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~------~~~ 276 (474)
+.-..|.+++++++.++....+.+.. +.+.-.+.|+|||||||||+.+.+.|..+-.+ +..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 34678889999999988877775541 12222289999999999999999999987542 223
Q ss_pred EecccccCh---hHHHHHHHhhc---------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 277 LELTSIYSN---SDLRRILLSTT---------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 277 l~~~~~~~~---~~l~~l~~~~~---------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
++.++-..- ..-.+.|..+. ..-.+++||.|+... ..-++|-..+....
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------------~AQnALRRviek~t--- 159 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------------DAQNALRRVIEKYT--- 159 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----------------HHHHHHHHHHHHhc---
Confidence 333332211 12223344433 346899999998842 22334444444432
Q ss_pred CCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 345 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 345 ~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.+.-+...+|++..+-|++.. ||.. ..|...+..+......+....
T Consensus 160 -~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 160 -ANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred -cceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhc
Confidence 345566789999999999997 7753 456666666666666665543
No 232
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=2.6e-06 Score=80.91 Aligned_cols=133 Identities=26% Similarity=0.343 Sum_probs=70.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc----EEEEeccccc--------------------------------------
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD----IYDLELTSIY-------------------------------------- 283 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~----~~~l~~~~~~-------------------------------------- 283 (474)
.+.++|+||+|+|||+|++.+.+.+.-. +|........
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4679999999999999999999988321 1111111100
Q ss_pred --ChhHHHHHHHh---hcCCcEEEEecccccc-cccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 --SNSDLRRILLS---TTNRSILVIEDVDCSV-EMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 --~~~~l~~l~~~---~~~~sIl~iDeiD~l~-~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
....+..++.. ...+.||+|||++.+. . .......+..|.+.++..... .++.+|+++...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~--~~~~~v~~~S~~ 166 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA-----------SEEDKDFLKSLRSLLDSLLSQ--QNVSIVITGSSD 166 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC-----------TTTTHHHHHHHHHHHHH------TTEEEEEEESSH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc-----------ccchHHHHHHHHHHHhhcccc--CCceEEEECCch
Confidence 01112222222 2245899999999986 2 112244556666666653332 334444433321
Q ss_pred ----C--CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 358 ----E--RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 358 ----~--~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
+ .-...+.. |+.. +.+++.+.++..+++...+..
T Consensus 167 ~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 167 SLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp HHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHH
Confidence 1 12233444 8877 999999999999999987643
No 233
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.40 E-value=1.9e-06 Score=91.79 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=95.6
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhH
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSD 287 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~ 287 (474)
+.+++|.....+.+...+.... +....+++.|++||||+++|+++.... +.+++.++|+.+. ...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HHH
Confidence 5578888877777776665432 224579999999999999999999876 4689999999883 333
Q ss_pred HHHHH-H-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCCC--
Q 011935 288 LRRIL-L-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSCG-- 345 (474)
Q Consensus 288 l~~l~-~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~~-- 345 (474)
+...+ . ....++.|||||||.+.. .....|+..++.-. ...+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~----------------~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL----------------DVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH----------------HHHHHHHHHHhcCcEEeCCCCC
Confidence 33332 1 122467899999998832 22334555554211 1001
Q ss_pred ---CceEEEEecCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHhhc
Q 011935 346 ---DERIIVFTTNHK-------ERIDPALLRPGRM-DVHINMSYCTV--HGFKVLASNYLG 393 (474)
Q Consensus 346 ---~~~iiI~tTN~~-------~~Ld~aLlrpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 393 (474)
.++-||+||+.. ..+.+.|.. |+ ...|++|+... ++...|+.+|+.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 123566777643 234556665 66 35666665432 345567777764
No 234
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=7.2e-07 Score=77.49 Aligned_cols=39 Identities=33% Similarity=0.551 Sum_probs=30.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh--------CCcEEEEecccccC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL--------RFDIYDLELTSIYS 284 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l--------~~~~~~l~~~~~~~ 284 (474)
++.++++||||+|||++++.++..+ +.+++.+++....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRT 50 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCC
Confidence 3568899999999999999999987 67788887766553
No 235
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=7.8e-06 Score=80.99 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC----------------cEEEEeccc---ccChhHHHHHHHhhc------CCc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF----------------DIYDLELTS---IYSNSDLRRILLSTT------NRS 299 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~----------------~~~~l~~~~---~~~~~~l~~l~~~~~------~~s 299 (474)
.+.+|||+||+|+||+.+|.++|..+-. +++.+.... ...-+.++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4568999999999999999999987632 344442221 123455666554442 235
Q ss_pred EEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCC
Q 011935 300 ILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC 379 (474)
Q Consensus 300 Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p 379 (474)
|++||++|.+. ...-+.||..++. ++++.++|+.|+.++.|.|.+++ |+ ..+.|+.+
T Consensus 98 v~ii~~ad~mt----------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT----------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcC----------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 99999999884 2446788888875 45678999999999999999998 88 46677754
No 236
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.39 E-value=1.6e-06 Score=90.98 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=86.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
+..+.+|++|+|......++.+.++.... ....+|+.|.+||||..+|++|-+.. +-+|+.+||+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 44566899999999999999887776543 34689999999999999999999865 56999999999
Q ss_pred ccChhHHHH-HH------------------HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC--c
Q 011935 282 IYSNSDLRR-IL------------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG--L 340 (474)
Q Consensus 282 ~~~~~~l~~-l~------------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg--~ 340 (474)
+- +.-|.. +| .+..+.+-||+|||..+- ......||..+.. +
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp----------------l~LQaKLLRVLQEkei 369 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP----------------LPLQAKLLRVLQEKEI 369 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC----------------HHHHHHHHHHHhhceE
Confidence 84 222222 22 112346799999998762 2333456655531 1
Q ss_pred c---c--CCCCceEEEEecCCC
Q 011935 341 W---S--SCGDERIIVFTTNHK 357 (474)
Q Consensus 341 ~---~--~~~~~~iiI~tTN~~ 357 (474)
+ + ...-++-||++||..
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred EecCCCCceeeEEEEEeccCcC
Confidence 1 1 111246688999963
No 237
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.38 E-value=7.4e-07 Score=99.35 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=78.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC-------cEEEEecccccC-hh------HHHHHHHhhcCCcEEEEecccccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF-------DIYDLELTSIYS-NS------DLRRILLSTTNRSILVIEDVDCSVEM 312 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~-------~~~~l~~~~~~~-~~------~l~~l~~~~~~~sIl~iDeiD~l~~~ 312 (474)
.++||.|+||||||.+++++++.... +...+.++.... .. .+..-.......++++|||+|.+..
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~- 571 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN- 571 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH-
Confidence 36999999999999999999986533 333333333210 00 0000001123568999999998832
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCCC-------------CCCccccCCCcc
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHKE-------------RIDPALLRPGRM 370 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~~-------------~Ld~aLlrpGRf 370 (474)
.....|+..|+. +...-....-||+|+|..+ .|+++|+. ||
T Consensus 572 ---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 572 ---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred ---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 233455666542 1111123467889999642 36799999 99
Q ss_pred ceE-EEeCCCCHHHHHHHHHHhh
Q 011935 371 DVH-INMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 371 d~~-I~~~~p~~~~~~~l~~~~l 392 (474)
|.. +-++.|+.+.=+.|+.+.+
T Consensus 635 DLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cEEEEecCCCChHHHHHHHHHHH
Confidence 865 4568888877666665554
No 238
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.1e-06 Score=82.49 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC-----------C--cEEEEe--cccccChhHHHHHHHhhc-------CCcEEE
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR-----------F--DIYDLE--LTSIYSNSDLRRILLSTT-------NRSILV 302 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~-----------~--~~~~l~--~~~~~~~~~l~~l~~~~~-------~~sIl~ 302 (474)
.+..|||+|+.|+||+.+++++|+.+- . ++..++ ... ...+.++.+....+ .+-|++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEE
Confidence 456899999999999999999999871 1 233344 222 24456776665542 456999
Q ss_pred EecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHH
Q 011935 303 IEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVH 382 (474)
Q Consensus 303 iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~ 382 (474)
||++|.+. ....+.||..++. +++..++|++|+.++.+-|+++. |+ ..++|+.++.+
T Consensus 96 I~~~e~m~----------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 96 IKNIEKTS----------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred EecccccC----------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 99998773 2346778888875 34567888888888999999988 87 57899999988
Q ss_pred HHHHHHHH
Q 011935 383 GFKVLASN 390 (474)
Q Consensus 383 ~~~~l~~~ 390 (474)
+....+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 87766654
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.37 E-value=2.3e-06 Score=90.79 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=95.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHH
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDL 288 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 288 (474)
..++|......++...+.... .....+++.|.+||||+++++++.... +.+++.++|..+. .+.+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 357787777777776665432 223578999999999999999998765 4689999999883 3333
Q ss_pred HHHH-H-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc-ccCCC----
Q 011935 289 RRIL-L-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL-WSSCG---- 345 (474)
Q Consensus 289 ~~l~-~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~-~~~~~---- 345 (474)
...+ . ....++.|||||||.+.. .....|+..++.- ....+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~----------------~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL----------------DAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH----------------HHHHHHHHHHhcCcEEECCCCce
Confidence 3332 1 122468999999998832 2234455555421 11001
Q ss_pred --CceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCC--HHHHHHHHHHhhcc
Q 011935 346 --DERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCT--VHGFKVLASNYLGI 394 (474)
Q Consensus 346 --~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~--~~~~~~l~~~~l~~ 394 (474)
.++-||+||+.. ..+.+.|.. |+. .+|++|+.. .++...++..|+..
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 124466666643 233344444 554 478888776 56677788777653
No 240
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2e-05 Score=78.27 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=84.5
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC------------------------CcEEEEeccc-ccChhHHHHHHHhhc--
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR------------------------FDIYDLELTS-IYSNSDLRRILLSTT-- 296 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~------------------------~~~~~l~~~~-~~~~~~l~~l~~~~~-- 296 (474)
..+.+|||+|| +||+.+|.++|..+- -+++.+.... ...-+.++.+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34678999996 689999999998652 1233333221 113466776655432
Q ss_pred ----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccce
Q 011935 297 ----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDV 372 (474)
Q Consensus 297 ----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~ 372 (474)
..-|++||++|.+. ...-+.||..++. ++.+.++|++|+.++.+-|.+++ |+ .
T Consensus 100 p~~~~~kV~II~~ad~m~----------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q 156 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKS--RT-Q 156 (290)
T ss_pred cccCCcEEEEeehhhhcC----------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHH--cc-e
Confidence 34699999999884 2456888888875 44668999999999999999999 98 5
Q ss_pred EEEeCCCCHHHHHHHHH
Q 011935 373 HINMSYCTVHGFKVLAS 389 (474)
Q Consensus 373 ~I~~~~p~~~~~~~l~~ 389 (474)
+|.|+. +.+...+++.
T Consensus 157 ~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 157 IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeeCCC-cHHHHHHHHH
Confidence 788876 5555555554
No 241
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.34 E-value=1.2e-06 Score=95.76 Aligned_cols=51 Identities=35% Similarity=0.424 Sum_probs=41.3
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
..-+++++|+++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3568899999998887665444 12589999999999999999999998654
No 242
>PF05729 NACHT: NACHT domain
Probab=98.32 E-value=3.7e-06 Score=75.59 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=71.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC---------cEEEEecccccChh---HHHHHH------------------Hhhc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF---------DIYDLELTSIYSNS---DLRRIL------------------LSTT 296 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~---------~~~~l~~~~~~~~~---~l~~l~------------------~~~~ 296 (474)
|-++++|+||+|||++++.++..+.. -++.+.+.+..... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 34789999999999999999987621 12233333332111 222222 2234
Q ss_pred CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC-CCCccccCCCccceEEE
Q 011935 297 NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHIN 375 (474)
Q Consensus 297 ~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~-~Ld~aLlrpGRfd~~I~ 375 (474)
.+.+|+||.+|.+...... .........+..++. .- ...+-.++|.+..+.. .+...+.. ...++
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~---~~--~~~~~~liit~r~~~~~~~~~~~~~----~~~~~ 146 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP---QA--LPPGVKLIITSRPRAFPDLRRRLKQ----AQILE 146 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh---hc--cCCCCeEEEEEcCChHHHHHHhcCC----CcEEE
Confidence 5679999999988541110 000111122333332 20 1112233433332221 22222222 15688
Q ss_pred eCCCCHHHHHHHHHHhhc
Q 011935 376 MSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 376 ~~~p~~~~~~~l~~~~l~ 393 (474)
++..+.++.+++++.++.
T Consensus 147 l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ECCCCHHHHHHHHHHHhh
Confidence 999999999999999985
No 243
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.30 E-value=3.9e-06 Score=88.88 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=61.8
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhH
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSD 287 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~ 287 (474)
+..++|.......+.+.+..... ....+|++|++||||+++|+++.... +.+++.++|..+. +..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~-~~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP-ESL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC-HHH
Confidence 34567776666666665554432 23579999999999999999998764 4689999999884 333
Q ss_pred HHHH-HHh-----------------hcCCcEEEEecccccc
Q 011935 288 LRRI-LLS-----------------TTNRSILVIEDVDCSV 310 (474)
Q Consensus 288 l~~l-~~~-----------------~~~~sIl~iDeiD~l~ 310 (474)
+... |.. ....++|||||||.+.
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~ 250 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP 250 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC
Confidence 3322 211 1245799999999984
No 244
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.30 E-value=1e-05 Score=84.64 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=118.5
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecccccChh
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIYSNS 286 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~~~~ 286 (474)
.+..++|.....+++.+.+..... ....+|++|++||||..+|++|.+... -+|+.+||..+- +.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-EN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-HH
Confidence 356889999999999888776543 246899999999999999999988764 599999999984 33
Q ss_pred HHH-HHHHh-----------------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhc-CcccCCC--
Q 011935 287 DLR-RILLS-----------------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFID-GLWSSCG-- 345 (474)
Q Consensus 287 ~l~-~l~~~-----------------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id-g~~~~~~-- 345 (474)
-+. .+|-. ..+.+.||||||..+. - .....||..+. +-...-|
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-------------l---~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-------------L---ELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC-------------H---HHHHHHHHHHHcCeeEecCCC
Confidence 332 24421 1356899999998772 1 22344555553 1111111
Q ss_pred ----CceEEEEecCCC--C-----CCCccccCCCccceEEEeCCCCHHH----HHHHHHHhhcccCCCCCcHHHHHhh-h
Q 011935 346 ----DERIIVFTTNHK--E-----RIDPALLRPGRMDVHINMSYCTVHG----FKVLASNYLGIKGKSHSLFGEIEGL-I 409 (474)
Q Consensus 346 ----~~~iiI~tTN~~--~-----~Ld~aLlrpGRfd~~I~~~~p~~~~----~~~l~~~~l~~~~~~~~l~~~i~~l-~ 409 (474)
-++-||++||.. + .+=+.|.- |+. ++.+..|.-.+ .--|+.+|+.... .+. .
T Consensus 271 ~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~---------~~~~~ 338 (464)
T COG2204 271 KPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFA---------AELGR 338 (464)
T ss_pred cccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHH---------HHcCC
Confidence 135588888863 1 12223332 443 34455555444 3456666654321 111 2
Q ss_pred cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q 011935 410 QSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQA 447 (474)
Q Consensus 410 ~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 447 (474)
....++|..+ ..|+.+.-|- .+++|.+.++..-...
T Consensus 339 ~~~~~s~~a~-~~L~~y~WPG-NVREL~N~ver~~il~ 374 (464)
T COG2204 339 PPKGFSPEAL-AALLAYDWPG-NVRELENVVERAVILS 374 (464)
T ss_pred CCCCCCHHHH-HHHHhCCCCh-HHHHHHHHHHHHHhcC
Confidence 2345777665 4455554433 3677777777665443
No 245
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.26 E-value=5e-06 Score=87.83 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChh
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNS 286 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 286 (474)
.+..++|.....+.+...+.... ....+++++|++||||+.+|+++.... +.+++.++|..+. +.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~-~~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP-EN 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC-hH
Confidence 34567777777777766555332 224678999999999999999998765 4689999999884 33
Q ss_pred HHHHHHHh------------------hcCCcEEEEecccccc
Q 011935 287 DLRRILLS------------------TTNRSILVIEDVDCSV 310 (474)
Q Consensus 287 ~l~~l~~~------------------~~~~sIl~iDeiD~l~ 310 (474)
.+...+.. ..++++||||||+.+.
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 33332211 1346899999999883
No 246
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.26 E-value=7.7e-06 Score=87.38 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=94.6
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc--------cc
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS--------IY 283 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~--------~~ 283 (474)
+|.+.+++|+.+.-.+ |-.....+...| ...--++||+|.||||||.+.+.+++-+....|.---.+ +.
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4567778887764322 222222223322 112246999999999999999999998765555321100 00
Q ss_pred ChhHHHHHHHhh-----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhc---------CcccCCCCceE
Q 011935 284 SNSDLRRILLST-----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFID---------GLWSSCGDERI 349 (474)
Q Consensus 284 ~~~~l~~l~~~~-----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id---------g~~~~~~~~~i 349 (474)
.+.+-++++.+. ...+|-+|||+|++.. .+-+.|+..|+ |+..+-....-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d----------------StrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD----------------STRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH----------------HHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 122333443332 4678999999999843 11233344333 22222222334
Q ss_pred EEEecCCCC-------------CCCccccCCCccceEE-EeCCCCHHHHHHHHHHhhccc
Q 011935 350 IVFTTNHKE-------------RIDPALLRPGRMDVHI-NMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 350 iI~tTN~~~-------------~Ld~aLlrpGRfd~~I-~~~~p~~~~~~~l~~~~l~~~ 395 (474)
|+++.|..+ .|+|.|++ |||.+. -+..||...=+.|..+....+
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhc
Confidence 788888432 47899999 999654 447788775556666655443
No 247
>PHA02624 large T antigen; Provisional
Probab=98.20 E-value=5.2e-06 Score=88.78 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCC
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
|+|.++.+|||||||||||+++.+|++.++-.++.++.+. +.++--+.-+...-+.+|||+-.-.-.... -
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~-----L 497 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKD-----L 497 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccccccc-----C
Confidence 6778889999999999999999999999966666666443 233334444556779999998633210000 0
Q ss_pred CCCchhhHHhhHHhhhcCcccCC-----CCc-----eEEEEecCCCCCCCccccCCCccceEEEeCC
Q 011935 322 VGSNTKLTLSGILNFIDGLWSSC-----GDE-----RIIVFTTNHKERIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~idg~~~~~-----~~~-----~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~ 378 (474)
.++..-..+.-|.+.+||-..-+ .+. --.|.|||. ..||..+.- ||-.++.|..
T Consensus 498 p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 498 PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 01111223567788888851100 001 135678885 567888888 9998888864
No 248
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=1.2e-05 Score=87.18 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=84.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC--cEEEEeccc----ccChhHHHHHHHh-----------hcCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTS----IYSNSDLRRILLS-----------TTNRSILVIEDVDCS 309 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~----~~~~~~l~~l~~~-----------~~~~sIl~iDeiD~l 309 (474)
.|+||-|++|||||+++++++.-+.. ++..+..+. +...-+|...+.. ...++||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999998864 666554332 1122333333322 224689999999866
Q ss_pred ccccccCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCCceEEEEecCCC---CCCCccccCCCccceEEEeC
Q 011935 310 VEMKDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDVHINMS 377 (474)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd~~I~~~ 377 (474)
- ..+++.|+..|+. .........++|+|-|.. +.|.++++. ||+++|.++
T Consensus 106 ~----------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 106 E----------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred C----------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 2 4678888888853 222233456778875432 568999999 999999999
Q ss_pred CCCHHHH
Q 011935 378 YCTVHGF 384 (474)
Q Consensus 378 ~p~~~~~ 384 (474)
+|+..+.
T Consensus 168 ~~~~~~~ 174 (584)
T PRK13406 168 GLALRDA 174 (584)
T ss_pred CCChHHh
Confidence 9987753
No 249
>PRK15115 response regulator GlrR; Provisional
Probab=98.18 E-value=8.4e-06 Score=86.12 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLR 289 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~ 289 (474)
.++|.......+.+.+.... .....++++|++||||+++|+++.... +.+++.++|..+. +..+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~ 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLE 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHH
Confidence 35555555555544444322 123578999999999999999998875 4789999999883 33333
Q ss_pred HH-HH-----------------hhcCCcEEEEecccccc
Q 011935 290 RI-LL-----------------STTNRSILVIEDVDCSV 310 (474)
Q Consensus 290 ~l-~~-----------------~~~~~sIl~iDeiD~l~ 310 (474)
.. |. ...++++|||||||.+.
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 241 (444)
T PRK15115 203 SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 (444)
T ss_pred HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC
Confidence 32 21 12246799999999983
No 250
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.18 E-value=6.3e-06 Score=80.55 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=59.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCcc--ceecCCCCCcHHHHHHHHHHHhCCcEEEE----------ecc
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG--YLLYGPPGTGKSSLIAAMANYLRFDIYDL----------ELT 280 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg--iLL~GppGtGKT~la~alA~~l~~~~~~l----------~~~ 280 (474)
.|.|+.-+++.|...++.++.++. +.+. +=|||+|||||+.+++.||+.+-.....- ++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 578999999999999998887652 2333 44899999999999999999773222111 111
Q ss_pred cccC----hhHHHHHHHhh---cCCcEEEEeccccc
Q 011935 281 SIYS----NSDLRRILLST---TNRSILVIEDVDCS 309 (474)
Q Consensus 281 ~~~~----~~~l~~l~~~~---~~~sIl~iDeiD~l 309 (474)
.-.. ..+|+.-+... -+++|.++||+|++
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111 12333333322 36899999999998
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=4.7e-05 Score=89.72 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=90.3
Q ss_pred CcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcE---EE
Q 011935 200 WGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDI---YD 276 (474)
Q Consensus 200 w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~---~~ 276 (474)
|......++..++.++|.++..+++...+. .+....+-+-++||+|+|||+||+++++.+...+ +.
T Consensus 172 ~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf 240 (1153)
T PLN03210 172 LGKLNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF 240 (1153)
T ss_pred HHhhccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE
Confidence 333444556778999999988888766543 1223346688999999999999999998774322 11
Q ss_pred Eecccc------cC---------hhH-----HHHHHH--------------h-hcCCcEEEEecccccccccccCCCCCC
Q 011935 277 LELTSI------YS---------NSD-----LRRILL--------------S-TTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 277 l~~~~~------~~---------~~~-----l~~l~~--------------~-~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
++...+ .. ... +..++. . ..++.+||+||+|..
T Consensus 241 v~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------ 308 (1153)
T PLN03210 241 IDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------ 308 (1153)
T ss_pred eeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------
Confidence 111000 00 000 111110 0 124678999998743
Q ss_pred CCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 322 VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..+..+....+ |.. .+--||+||... .+++...++..++++.|+.++..+++..+..
T Consensus 309 ------~~l~~L~~~~~--~~~--~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 ------DVLDALAGQTQ--WFG--SGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred ------HHHHHHHhhCc--cCC--CCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 12333332222 111 223455566643 3333335677899999999998888888753
No 252
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.13 E-value=1.3e-05 Score=90.04 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=110.3
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHh-hHHHHHHhCCCC-Cc-cceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLR-RKEFYRRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~-~~~~~~~~g~~~-~r-giLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.|.. -..|.....+.|....-..+.+.+...-. .+.-|...+... .. .+|++||||.|||+.+.+.|.++|+.++
T Consensus 309 ~~~~--k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 309 GWTE--KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred cccc--ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 4543 45566667787777776666665554411 111222221111 12 3689999999999999999999999999
Q ss_pred EEecccccChhHHHHHHHhhc--------------------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 276 DLELTSIYSNSDLRRILLSTT--------------------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 276 ~l~~~~~~~~~~l~~l~~~~~--------------------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
..|.+...+...+...+..+. ...||++||+|-++. .+|.. -..++++..
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~---------v~~l~~l~~ 456 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG---------VSKLSSLCK 456 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh---------HHHHHHHHH
Confidence 999998876655554443321 124999999998864 22211 112333333
Q ss_pred hhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
. ..+-+|+|+|..+......+. |-..-|+|+.|+.+.+..-+..+...
T Consensus 457 k---------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 457 K---------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred h---------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcc
Confidence 1 225688999987776654444 54577899999999877666655543
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=5.7e-05 Score=79.28 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=55.4
Q ss_pred CCCCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 196 GGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 196 ~~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.+..|- .-..|.+.++|+-......+|...+..+.... .....+-+||+||+|||||+.++.||.++|+.+.
T Consensus 68 ~~elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 68 EFELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ccchhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 345674 35679999999998888888877776332211 1122356889999999999999999999998877
Q ss_pred EEe
Q 011935 276 DLE 278 (474)
Q Consensus 276 ~l~ 278 (474)
.-.
T Consensus 140 Ew~ 142 (634)
T KOG1970|consen 140 EWS 142 (634)
T ss_pred eec
Confidence 543
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=1.6e-05 Score=70.87 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=24.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++++||||+|||+++..++..+ +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 5899999999999999999877 344554443
No 255
>PHA02774 E1; Provisional
Probab=98.09 E-value=2.3e-05 Score=83.70 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=42.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEE-EecccccChhHHHHHHHhhcCCcEEEEecc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYD-LELTSIYSNSDLRRILLSTTNRSILVIEDV 306 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~-l~~~~~~~~~~l~~l~~~~~~~sIl~iDei 306 (474)
|.|.+++++||||||||||+++.+|++.++..++. +|..+- --+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~-------FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH-------FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc-------cccchhccCCEEEEecC
Confidence 55666789999999999999999999999755543 443211 11334445679999998
No 256
>PHA00729 NTP-binding motif containing protein
Probab=98.08 E-value=5.1e-06 Score=79.30 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=39.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc----------cChhHHHHHHHhh----cCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI----------YSNSDLRRILLST----TNRSILVIEDVDCS 309 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~----------~~~~~l~~l~~~~----~~~sIl~iDeiD~l 309 (474)
.+++|+|+||||||++|.+||+.++..+..+..... .+.+.+...+..+ ....+|+|||+-.-
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~ 94 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIW 94 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchh
Confidence 479999999999999999999998644333211111 1223333333222 22368999997544
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.05 E-value=7.1e-05 Score=78.88 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=60.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLR 289 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~ 289 (474)
.++|.......+.+.+.... .....++++|.+||||+++++++.... +.+++.++|..+. ...+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHH
Confidence 35566666666655554321 224679999999999999999998665 4689999999874 34444
Q ss_pred HHHHh------------------hcCCcEEEEecccccc
Q 011935 290 RILLS------------------TTNRSILVIEDVDCSV 310 (474)
Q Consensus 290 ~l~~~------------------~~~~sIl~iDeiD~l~ 310 (474)
..+.. ..++++|||||||.+.
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~ 246 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC
Confidence 33311 1246899999999984
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=5.9e-05 Score=74.56 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCccceecCCCCCcHHHHHHHHHHH--hC--Cc-EEEEecccccChh------------------------HHHHHHHhh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANY--LR--FD-IYDLELTSIYSNS------------------------DLRRILLST 295 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~--l~--~~-~~~l~~~~~~~~~------------------------~l~~l~~~~ 295 (474)
..+-+.|+|++|+|||+||..+++. .. ++ ++.+++....+.. .+...+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3456889999999999999999977 32 22 3334443322111 111222221
Q ss_pred --cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceE
Q 011935 296 --TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVH 373 (474)
Q Consensus 296 --~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~ 373 (474)
..+++|||||++... .+..+...+... ..+.-||+||....-. ...- .-...
T Consensus 98 L~~~~~LlVlDdv~~~~------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~~---~~~~~ 151 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSLG---GTDKV 151 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------------HH-------HCH----HSS-EEEEEESCGGGG-TTHH---SCEEE
T ss_pred hccccceeeeeeecccc------------------cccccccccccc----cccccccccccccccc-cccc---ccccc
Confidence 247899999987542 122222222111 1123455677653221 1111 11568
Q ss_pred EEeCCCCHHHHHHHHHHhhccc
Q 011935 374 INMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 374 I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++++..+.++..+++..+....
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSH
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999997654
No 259
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.96 E-value=2.8e-05 Score=80.80 Aligned_cols=91 Identities=11% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
...+..|||......++.+.++....+ ...+||.|.+||||..+|++|-+.. +-+++.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 446789999999999999988865432 3689999999999999999998876 56899999999842
Q ss_pred hhHHHHHHH-------h----------hcCCcEEEEeccccc
Q 011935 285 NSDLRRILL-------S----------TTNRSILVIEDVDCS 309 (474)
Q Consensus 285 ~~~l~~l~~-------~----------~~~~sIl~iDeiD~l 309 (474)
.---.++|- . ..+++-||+|||..+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 111122331 1 235789999999876
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.91 E-value=6.1e-06 Score=83.91 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=83.9
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc----cc-----
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS----IY----- 283 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~----~~----- 283 (474)
+|.|.+.+|..|.-.+..-...... ........-++||.|.||||||.|.+.+++.....+|..--.. +.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 5667788877764433211110000 0000111246999999999999999988876665554331111 10
Q ss_pred C----hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc---------cCCCCceEE
Q 011935 284 S----NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW---------SSCGDERII 350 (474)
Q Consensus 284 ~----~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~---------~~~~~~~ii 350 (474)
+ +..+..-..-..+++|++|||+|.+-. .....|+..|+.-. ..-....-|
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~~~----------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKMKE----------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT--C----------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccceeEEeCCchhcccCceeeecccccccc----------------hHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 0 111111111224679999999998732 23456666665311 000122357
Q ss_pred EEecCCCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHhhccc
Q 011935 351 VFTTNHKE-------------RIDPALLRPGRMDVHINM-SYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 351 I~tTN~~~-------------~Ld~aLlrpGRfd~~I~~-~~p~~~~~~~l~~~~l~~~ 395 (474)
++++|... .++++|+. |||..+.+ ..++.+.=..+.++.+...
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 78888654 47889999 99988665 6677766667777766554
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=7.4e-06 Score=70.22 Aligned_cols=31 Identities=35% Similarity=0.723 Sum_probs=27.3
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
|++.||||+|||++++.+|+.+|++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988776543
No 262
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.87 E-value=1.9e-05 Score=75.41 Aligned_cols=23 Identities=48% Similarity=0.846 Sum_probs=20.3
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
+.-+|+||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34599999999999999999974
No 263
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.86 E-value=2.9e-05 Score=72.81 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=58.6
Q ss_pred ceecCCCCCcHHHHHHHH-HHH-h--CCcEEEEeccccc-----C--hhHH------------------HHHHHhhcCCc
Q 011935 249 YLLYGPPGTGKSSLIAAM-ANY-L--RFDIYDLELTSIY-----S--NSDL------------------RRILLSTTNRS 299 (474)
Q Consensus 249 iLL~GppGtGKT~la~al-A~~-l--~~~~~~l~~~~~~-----~--~~~l------------------~~l~~~~~~~s 299 (474)
++++|.||+|||+.|-.. ... + |.+++. +...+. . ...+ -......+..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 332 2 555554 444221 0 0000 11112223689
Q ss_pred EEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCC
Q 011935 300 ILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC 379 (474)
Q Consensus 300 Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p 379 (474)
+|||||+...++.+..... . ....++.+... ...+.-||++|-++..+|+.+++ .++.++++..+
T Consensus 82 liviDEa~~~~~~r~~~~~------~----~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK------K----VPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc------c----chHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999873322100 0 11222333221 12346788999999999999987 89988887654
No 264
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=2.2e-05 Score=78.58 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcE-EEEeccccc--ChhHHHHHH----------Hh-hcCCcEEEEeccccc
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDI-YDLELTSIY--SNSDLRRIL----------LS-TTNRSILVIEDVDCS 309 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~-~~l~~~~~~--~~~~l~~l~----------~~-~~~~sIl~iDeiD~l 309 (474)
.+++|+.||||-|.|||.|.-.....+...- ..+....++ .-..+..+- .+ +.+--||+|||+.-.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4679999999999999999999888775432 112111111 011111111 11 123469999998743
Q ss_pred ccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC-CCCC
Q 011935 310 VEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH-KERI 360 (474)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~-~~~L 360 (474)
+-.....++.|++.+=. .++++|+|+|. |+.|
T Consensus 143 -------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 143 -------------DIADAMILGRLLEALFA------RGVVLVATSNTAPDNL 175 (367)
T ss_pred -------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCChHHh
Confidence 33446778888887743 46899999995 3444
No 265
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.82 E-value=0.00023 Score=69.75 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC--cEEEEeccccc
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTSIY 283 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~~~ 283 (474)
...-+.++|+-..++..--.++.. +-|+-..|.+|+.|+||||||.+|-.+|+.+|- ||..+..+.++
T Consensus 36 ~~~s~GmVGQ~~AR~Aagvi~kmi--------~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 36 RYVSEGMVGQVKARKAAGVILKMI--------REGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred ccccccchhhHHHHHHhHHHHHHH--------HcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceee
Confidence 334456777766665442222211 224556789999999999999999999999864 45555444443
No 266
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.82 E-value=2.6e-05 Score=67.46 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCcc--ceecCCCCCcHHHHHHHHHHHh
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG--YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg--iLL~GppGtGKT~la~alA~~l 270 (474)
.|.|++-+++.|...+..++..+ .+++. +-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57899999999999999998654 23333 4499999999999999999985
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.82 E-value=7.4e-05 Score=70.61 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.8
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
|++...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56667779999999999999999888543 55677777654
No 268
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.80 E-value=0.0013 Score=61.21 Aligned_cols=132 Identities=13% Similarity=0.237 Sum_probs=92.2
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHhhcCCCc-ccceeecccC----------------------CCCceeEeccCCCee
Q 011935 59 NLTLVFDEWSGMSRNQVFDAAELYLRTKINPD-TERLKVSKTS----------------------RQKNFTVSIEKGEEV 115 (474)
Q Consensus 59 ~~~~~i~e~~~~~~n~~y~a~~~YL~~~~~~~-~~~l~~~~~~----------------------~~~~~~~~~~~~~~v 115 (474)
..++.|+.. +++|+.+-.+|+...... .+++.+.... +.+.+.+.+..| ..
T Consensus 26 ~~sv~I~~~-----D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 26 TSSVEIPSD-----DEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEEECCC-----CHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 457777764 489999999999875444 5666665522 355788999999 78
Q ss_pred EEeecCceeEEEEEEecCCCCCC-----CcceEEEEEecccchhhHHHhhhHHHHHHHHHH--HhcccEEEEeecCCCCC
Q 011935 116 TDSFQNVQLQWKFVCKEPQNNHS-----GEKRYFELSFHKKHKQTVICYYLPHVVERAKEI--KQEEKVVKLYNRECPYD 188 (474)
Q Consensus 116 ~d~f~g~~~~w~~~~~~~~~~~~-----~~~~~~~l~f~~~~~~~~l~~yl~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 188 (474)
...|+| +|..+.+..++... .+.+.++|++..++++ +|+. +++++++. +..+..+.+|.....
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~-~l~~----ll~ear~~~~~~~~~~t~Iy~~~~~-- 169 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPK-PLKD----LLEEAREYYLKKQKGKTTIYRADGS-- 169 (187)
T ss_pred EEEECC---EEEEEEEEeccccccccCCCCceEEEEEEecCCHH-HHHH----HHHHHHHHHHHhcCCcEEEEeCCCC--
Confidence 889999 68777776533221 2478899999998775 4444 55555543 444556779988531
Q ss_pred CCCCCCCCCCCCcccccCCCCCCccc
Q 011935 189 DDDDGGGGGGMWGSINLEHPSTFDTL 214 (474)
Q Consensus 189 ~~~~~~~~~~~w~~~~~~~~~~f~~l 214 (474)
+..|..+...+++++++|
T Consensus 170 --------~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 --------EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred --------CCCCcCCCCcCCCCCCCC
Confidence 126999888888999886
No 269
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=1.7e-05 Score=72.22 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+.+..++|+||||||||++++++|+.+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999988654
No 270
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.80 E-value=0.00033 Score=72.38 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=52.6
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCC-------------------CCcHHHHHhhhcCCC--CCH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS-------------------HSLFGEIEGLIQSTD--VTP 416 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~-------------------~~l~~~i~~l~~~~~--~tp 416 (474)
..|..|| |+|.-..|.++.++++.-+..+...|...... .....+++..+...+ ++.
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltD 274 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTD 274 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHH
Confidence 4566677 66888999999999999999988888654110 134455555554333 333
Q ss_pred HH-HHHHHhccCCHHHHHHHHHHH
Q 011935 417 AE-VAEELMKADDADVALEGLVNF 439 (474)
Q Consensus 417 a~-i~~~l~~~~~~~~al~~l~~~ 439 (474)
-+ +++.+....+|+.|++.+++.
T Consensus 275 Le~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 275 LEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32 233334566899999998863
No 271
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.79 E-value=0.00014 Score=83.92 Aligned_cols=127 Identities=20% Similarity=0.324 Sum_probs=90.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHH--------------------HHhhcCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRI--------------------LLSTTNRSILVIED 305 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l--------------------~~~~~~~sIl~iDe 305 (474)
.+++||.|.||+|||+|+.|+|+..|-.++.+++++-. +|-.+ +..+.+..-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 46899999999999999999999999999999988653 22222 33345678899999
Q ss_pred ccccccccccCCCCCCCCCchhhHHhhHHhhhcC-----------cccCCCCceEEEEecCCC------CCCCccccCCC
Q 011935 306 VDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-----------LWSSCGDERIIVFTTNHK------ERIDPALLRPG 368 (474)
Q Consensus 306 iD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-----------~~~~~~~~~iiI~tTN~~------~~Ld~aLlrpG 368 (474)
+... ++.++.+|-..+|. ..+ +..+..|++|-|.- ..||..++.
T Consensus 1620 iNLa----------------SQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1620 INLA----------------SQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred hhhh----------------HHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 9744 24455555555442 222 22345565666633 358899998
Q ss_pred ccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 369 RMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 369 Rfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
||. .|.|...+.+....|+...++..
T Consensus 1681 RFs-vV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1681 RFS-VVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred hhh-eEEecccccchHHHHHHhhCCcc
Confidence 995 68899999999888888877643
No 272
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.77 E-value=2.7e-05 Score=83.06 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=50.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-CcEEEEec
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-FDIYDLEL 279 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-~~~~~l~~ 279 (474)
.....|+++.|.+++++.|.+.+...... + ...++-++|.||||+|||+|+++||+.+. +++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~g------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQG------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHh------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 44556999999999999999877644322 1 12345688999999999999999999773 57776644
No 273
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00018 Score=80.65 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=94.7
Q ss_pred CcccccC-hhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 011935 211 FDTLAMD-PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLEL 279 (474)
Q Consensus 211 f~~l~g~-~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~~ 279 (474)
++.++|. ++..+.+++.+.+ .-+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6788887 6666666665542 224788999999999999999999876 345667777
Q ss_pred ccccC--------hhHHHHHHHh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCce
Q 011935 280 TSIYS--------NSDLRRILLS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 348 (474)
Q Consensus 280 ~~~~~--------~~~l~~l~~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ 348 (474)
..+.. +..++.+... ...+.||+|||++.+.+.... ....-...+|..+-. . ++.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---------~~~~d~~nlLkp~L~---r--g~l 317 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---------YGAIDAANLLKPLLA---R--GGL 317 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---------chHHHHHHhhHHHHh---c--CCe
Confidence 65442 3455666654 335779999999999762211 001112222222211 1 226
Q ss_pred EEEEecCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 349 IIVFTTNHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 349 iiI~tTN~~-----~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
.+|+||..- -.-||+|-| ||+. +.++.|+.+....++..
T Consensus 318 ~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 318 WCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPG 361 (898)
T ss_pred EEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhh
Confidence 677765532 234899999 9985 57899987764444443
No 274
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=4.3e-05 Score=70.26 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=61.2
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKL 328 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~ 328 (474)
+++.|+||+|||++++.|+..++.+++.+|.-... +. - . ......
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~--------------~~---------------~----~--~~~~~~ 47 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ--------------PN---------------W----Q--ERDDDD 47 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec--------------cc---------------c----c--cCCHHH
Confidence 68999999999999999999998887665432110 00 0 0 000011
Q ss_pred HHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 329 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 329 ~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.+..+...+.+ + . +|+-.|+...+-+..+. ++|..|.+..|.......+++..+.
T Consensus 48 ~~~~~~~~~~~------~-~-wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 48 MIADISNFLLK------H-D-WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHHHHhC------C-C-EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 12222222221 2 2 45555554433234444 7899999999999888888888764
No 275
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.71 E-value=0.00016 Score=77.08 Aligned_cols=164 Identities=17% Similarity=0.230 Sum_probs=97.3
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC--CccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-----
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW--KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY----- 283 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~--~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~----- 283 (474)
|-.|.|.+.+|.-|.-.+ +..-..+..-|.+. --++++.|.||||||-+.++.++.+...+|..--++-.
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 566777777777664322 12111111112222 23599999999999999999999998888754211110
Q ss_pred ---ChhHHHHHHHhh-----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC---------cccCCCC
Q 011935 284 ---SNSDLRRILLST-----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG---------LWSSCGD 346 (474)
Q Consensus 284 ---~~~~l~~l~~~~-----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg---------~~~~~~~ 346 (474)
.++.-.....++ ...+|-.|||+|++-. .. -..++..|+. +..+-+.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-------------~d---qvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-------------KD---QVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh-------------Hh---HHHHHHHHHhheehheecceEEeecc
Confidence 011111111111 3678999999998832 11 1234555542 1111111
Q ss_pred ceEEEEecCCCC-------------CCCccccCCCccce-EEEeCCCCHHHHHHHHHHhhccc
Q 011935 347 ERIIVFTTNHKE-------------RIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 347 ~~iiI~tTN~~~-------------~Ld~aLlrpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
.--|++++|... .+.++++. |||. .|-+..|++..=..|.++.+..+
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 223677788542 36788999 9995 56679999998888888877653
No 276
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=6.4e-05 Score=68.84 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=29.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
-+++.||||+|||++|+.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 47899999999999999999999999888873
No 277
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.00014 Score=83.26 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=89.3
Q ss_pred CCCccceecCCCCCcHHHH-HHHHHHHhCCcEEEEecccccChhHHHHHHHhh-------------c----CCcEEEEec
Q 011935 244 AWKRGYLLYGPPGTGKSSL-IAAMANYLRFDIYDLELTSIYSNSDLRRILLST-------------T----NRSILVIED 305 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~l-a~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~-------------~----~~sIl~iDe 305 (474)
...|+|+++||||+|||++ .-++-+++-+.++.+|.+.-...+.....+.+. + +..|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 3468999999999999995 568889999999999988765444333444332 1 135999999
Q ss_pred ccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC------CceEEEEecCCCCCC-----CccccCCCccceEE
Q 011935 306 VDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG------DERIIVFTTNHKERI-----DPALLRPGRMDVHI 374 (474)
Q Consensus 306 iD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~------~~~iiI~tTN~~~~L-----d~aLlrpGRfd~~I 374 (474)
|. +-. .+.-... ..-.-+..|+ .-.|+|++.. .++++++++|.+.+. ...++| -...|
T Consensus 1572 In-Lp~--~~~y~~~----~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r---~~v~v 1640 (3164)
T COG5245 1572 IN-LPY--GFEYYPP----TVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR---KPVFV 1640 (3164)
T ss_pred cC-Ccc--ccccCCC----ceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc---CceEE
Confidence 98 321 1111111 1111111222 2245665433 347888899977542 234443 24678
Q ss_pred EeCCCCHHHHHHHHHHhhcc
Q 011935 375 NMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 375 ~~~~p~~~~~~~l~~~~l~~ 394 (474)
.+.+|.......|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 89999999999998887754
No 278
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.0032 Score=64.14 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=76.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC-----hh-------------------------------
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS-----NS------------------------------- 286 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~-----~~------------------------------- 286 (474)
+.-+.++||..+|||++...+.+.+ |+..+.+|+..+.+ ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4567899999999999999987665 67778888776532 00
Q ss_pred -HHHHH-----HHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC-----Cc-eEEEEec
Q 011935 287 -DLRRI-----LLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG-----DE-RIIVFTT 354 (474)
Q Consensus 287 -~l~~l-----~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~-----~~-~iiI~tT 354 (474)
..... +....+|-||+|||||++++. .. ....++..+........ .. +++++-+
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~-----------~~---~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY-----------PQ---IADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC-----------cc---hHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 01111 122246789999999999751 11 11233333322211111 11 2233322
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 355 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 355 N~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
..+......-..|=.+...|+++.-+.++...|++.|-
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 22211111112343456688899999999999998874
No 279
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.0004 Score=72.45 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=77.2
Q ss_pred HhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe-cccccChhHHHHH---HHhhc--CCcEEEEeccccccccc
Q 011935 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE-LTSIYSNSDLRRI---LLSTT--NRSILVIEDVDCSVEMK 313 (474)
Q Consensus 240 ~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~-~~~~~~~~~l~~l---~~~~~--~~sIl~iDeiD~l~~~~ 313 (474)
.....++ -++++||.+||||++++.+...+.-.++.++ +........+... +.... .+..||||||+++-+
T Consensus 32 ~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~-- 108 (398)
T COG1373 32 KLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD-- 108 (398)
T ss_pred hcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh--
Confidence 3334444 7899999999999999888887755444443 3333333333222 22222 458999999998722
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCC-CccccCCCccceEEEeCCCCHHHHHH------
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI-DPALLRPGRMDVHINMSYCTVHGFKV------ 386 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~L-d~aLlrpGRfd~~I~~~~p~~~~~~~------ 386 (474)
....+..|.+. +..-++|.++|..-.+ ..+-.=|||. ..+++.+.+..++..
T Consensus 109 ------------W~~~lk~l~d~--------~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~ 167 (398)
T COG1373 109 ------------WERALKYLYDR--------GNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEI 167 (398)
T ss_pred ------------HHHHHHHHHcc--------ccceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhccccc
Confidence 22223333322 1113455555543222 2222237795 678888899999854
Q ss_pred -------HHHHhhccc
Q 011935 387 -------LASNYLGIK 395 (474)
Q Consensus 387 -------l~~~~l~~~ 395 (474)
++..|+...
T Consensus 168 ~~~~~~~~f~~Yl~~G 183 (398)
T COG1373 168 EPSKLELLFEKYLETG 183 (398)
T ss_pred chhHHHHHHHHHHHhC
Confidence 677887654
No 280
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00024 Score=63.73 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.+.||||+|||+++.-+|+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3458899999999999999999877
No 281
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.61 E-value=0.00036 Score=69.91 Aligned_cols=132 Identities=14% Similarity=0.242 Sum_probs=91.8
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEE
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIY 275 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~ 275 (474)
....+...+...|+.+++.....+.+.+....+.. ....+|+.|..||||-.+|++--... ..+|+
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 44455566777899999999998888876665532 23468999999999999999865433 57899
Q ss_pred EEecccccChhHHHHHHHh------------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhh-cCccc
Q 011935 276 DLELTSIYSNSDLRRILLS------------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFI-DGLWS 342 (474)
Q Consensus 276 ~l~~~~~~~~~~l~~l~~~------------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~i-dg~~~ 342 (474)
.+||+.+-.+..-.++|-. ..+.+.+|+|||.-+.+ .....||.++ ||...
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp----------------~lQaKLLRFL~DGtFR 323 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP----------------RLQAKLLRFLNDGTFR 323 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH----------------HHHHHHHHHhcCCcee
Confidence 9999999755444455533 34567899999976632 3344566666 45544
Q ss_pred CCCCc------eEEEEecCCC
Q 011935 343 SCGDE------RIIVFTTNHK 357 (474)
Q Consensus 343 ~~~~~------~iiI~tTN~~ 357 (474)
.-|++ +-||+||..+
T Consensus 324 RVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 324 RVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred ecCCcceEEEEEEEEeccccc
Confidence 44432 5678888754
No 282
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00011 Score=80.31 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=75.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecc----ccc----ChhHHHHHHHh-----hcCCcEEEEecccccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT----SIY----SNSDLRRILLS-----TTNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~----~~~----~~~~l~~l~~~-----~~~~sIl~iDeiD~l~~~~~ 314 (474)
++||.|.||||||.|.+.+++.+...+|.---+ .+. .+....+...+ ...++|.+|||+|.+-.
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~--- 397 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE--- 397 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh---
Confidence 589999999999999999999887766633111 110 01110111111 13689999999998732
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcCc---------ccCCCCceEEEEecCCCC-------------CCCccccCCCccce
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHKE-------------RIDPALLRPGRMDV 372 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg~---------~~~~~~~~iiI~tTN~~~-------------~Ld~aLlrpGRfd~ 372 (474)
.....+...|+.- ...-....-|++++|... .|+++|+. |||.
T Consensus 398 -------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 398 -------------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred -------------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 1123444444421 000011123667777553 36788999 9997
Q ss_pred EEEe-CCCCHHHHHHHHHHhhcc
Q 011935 373 HINM-SYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 373 ~I~~-~~p~~~~~~~l~~~~l~~ 394 (474)
..-+ ..|+.+.=..++.+.+..
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHH
Confidence 6555 567766545555555443
No 283
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.60 E-value=0.00017 Score=66.28 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=46.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChh-----------------------HHHHHHHh-hcCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNS-----------------------DLRRILLS-TTNRSILVI 303 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~-----------------------~l~~l~~~-~~~~sIl~i 303 (474)
-+|+.||||+|||++|..++..++.+++.+.......++ ++..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 378999999999999999999988777766655443221 24444444 344668999
Q ss_pred eccccccc
Q 011935 304 EDVDCSVE 311 (474)
Q Consensus 304 DeiD~l~~ 311 (474)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 98887753
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.59 E-value=0.00041 Score=63.96 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
+|++||||||||+++..++... |..++.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999887643 44444443
No 285
>PRK13947 shikimate kinase; Provisional
Probab=97.56 E-value=6.1e-05 Score=68.72 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=29.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
+++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999987763
No 286
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.56 E-value=0.00042 Score=65.11 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=52.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh----------hHHHHHHHhh-----------cCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN----------SDLRRILLST-----------TNRSILV 302 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~----------~~l~~l~~~~-----------~~~sIl~ 302 (474)
+..++.||||||||++++.++..+ +..++.+..+..... ..+...+... ....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 467889999999999999988655 566776665543211 1122222111 2347999
Q ss_pred EecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 303 IEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 303 iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
|||+..+. ...+..|+..+.. .+..+++|+-.+.
T Consensus 99 VDEasmv~----------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD----------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B----------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC----------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99997663 3446666666543 2345677776554
No 287
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.54 E-value=6.8e-05 Score=66.94 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=28.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999999988665
No 288
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.53 E-value=0.00019 Score=65.89 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.2
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
.++|.|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999888
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.001 Score=68.94 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=43.6
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC-------CcEEEEeccccc----------------------ChhHHHHHHHhh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR-------FDIYDLELTSIY----------------------SNSDLRRILLST 295 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~-------~~~~~l~~~~~~----------------------~~~~l~~l~~~~ 295 (474)
.++.++|+||+|+|||+.+.-+|..+. ..+..+++.... ....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456789999999999999999998652 333333332211 124445555555
Q ss_pred cCCcEEEEeccccc
Q 011935 296 TNRSILVIEDVDCS 309 (474)
Q Consensus 296 ~~~sIl~iDeiD~l 309 (474)
....+|+||.+...
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 56789999998765
No 290
>PRK03839 putative kinase; Provisional
Probab=97.52 E-value=6.7e-05 Score=69.27 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=27.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
++|.|+||+|||++++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987654
No 291
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.52 E-value=0.00039 Score=71.98 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=38.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh-CCcEEEEecccccChhHHHHHHHhhcCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL-RFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l-~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
..++++.||||||||+++.+++.+. -..-.....+.+..+-. .+.+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 4689999999999999999998772 11101112222211100 122333446789999999875
No 292
>PRK00625 shikimate kinase; Provisional
Probab=97.52 E-value=7.1e-05 Score=68.99 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=29.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999999876
No 293
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.50 E-value=0.00022 Score=64.55 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+-.+++.||+|||||+|.+++|+-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3458999999999999999999864
No 294
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.49 E-value=0.00051 Score=65.37 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
|++...-++++||||+|||+++..+|... +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666669999999999999999998765 455555544
No 295
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.49 E-value=0.00031 Score=67.23 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
|++...-++++||||+|||+++..+|... +..++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666678999999999999999998754 6667777665
No 296
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.49 E-value=0.0015 Score=65.26 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=95.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHH-HH--HHhCCcEEEEecccccCh----
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAA-MA--NYLRFDIYDLELTSIYSN---- 285 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~a-lA--~~l~~~~~~l~~~~~~~~---- 285 (474)
.+.|..+..+.+.+.++.-.-.. -..++++.||.|+|||.++.. ++ ++.|-+++.+.+......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45566667777766665443222 246899999999999997763 33 478888887766544311
Q ss_pred -----------------------hHHHHHHHhh------c-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHh
Q 011935 286 -----------------------SDLRRILLST------T-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILN 335 (474)
Q Consensus 286 -----------------------~~l~~l~~~~------~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~ 335 (474)
+.+..++... + .+.|.++||||...+ ...+.. |-|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------h~rQtl---lYn 160 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------HSRQTL---LYN 160 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------chhhHH---HHH
Confidence 1222222211 1 234666789998764 111222 335
Q ss_pred hhcCcccCCCCceEEEEecCCCC---CCCccccCCCccceE-EEe-CCCCHHHHHHHHHHhhcccC
Q 011935 336 FIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRMDVH-INM-SYCTVHGFKVLASNYLGIKG 396 (474)
Q Consensus 336 ~idg~~~~~~~~~iiI~tTN~~~---~Ld~aLlrpGRfd~~-I~~-~~p~~~~~~~l~~~~l~~~~ 396 (474)
.+|-..+ ....+.||+.|.+-+ .|...+.. ||... |+| |.....+...++++.+....
T Consensus 161 lfDisqs-~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~~ 223 (408)
T KOG2228|consen 161 LFDISQS-ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVPA 223 (408)
T ss_pred HHHHHhh-cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCCc
Confidence 5554332 234578888777654 45567777 88865 776 44467889999999987653
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00068 Score=69.74 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=61.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh----C-CcEEEEecccc----------------------cChhHHHHHHHhhcCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL----R-FDIYDLELTSI----------------------YSNSDLRRILLSTTNR 298 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l----~-~~~~~l~~~~~----------------------~~~~~l~~l~~~~~~~ 298 (474)
+..++|.||+|+|||+++..||..+ | ..+..+..... .....+...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568899999999999999999764 3 23433433322 1223455556666677
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccc
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 364 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aL 364 (474)
.+|+||...... ....+...+..+.+... +-+..+|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~~---------------~d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMSQ---------------RDRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCCc---------------ccHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 899999885331 12234555555544321 112344555666776665443
No 298
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.48 E-value=5.6e-05 Score=69.38 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=36.6
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc---EEEEecccc
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD---IYDLELTSI 282 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~---~~~l~~~~~ 282 (474)
++|.++..+++...+. ... ...++.++++||||+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4677777777766554 211 1235789999999999999999998876444 666766665
No 299
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=4.9e-05 Score=66.95 Aligned_cols=27 Identities=41% Similarity=0.686 Sum_probs=23.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
++++||||+|||++++.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999994443
No 300
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.0004 Score=70.05 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc---------------------ChhHHHHHH---Hh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY---------------------SNSDLRRIL---LS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~---~~ 294 (474)
|++..+-++++||||||||+|+..++... +..+..++..... ..+....++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999988765443 4445444432211 111111122 22
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
.....+||||-+-++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 23578999999998865
No 301
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=7.6e-05 Score=68.11 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=30.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
++++|.|++|+|||++.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57899999999999999999999999999886
No 302
>PRK13949 shikimate kinase; Provisional
Probab=97.45 E-value=9e-05 Score=68.01 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=29.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++|.||||+|||++++.+|+.+++++++.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 303
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.45 E-value=0.00068 Score=62.22 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=44.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-----------------------hhHHHHHHHhhcCCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-----------------------NSDLRRILLSTTNRSILVIED 305 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-----------------------~~~l~~l~~~~~~~sIl~iDe 305 (474)
+|+.||||+|||++|..++...+.+.+.+....-.+ ..++.+.+.+...+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999999999988777777665544332 123444444334566899998
Q ss_pred cccccc
Q 011935 306 VDCSVE 311 (474)
Q Consensus 306 iD~l~~ 311 (474)
+..+..
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887654
No 304
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.45 E-value=0.00046 Score=65.06 Aligned_cols=64 Identities=14% Similarity=0.327 Sum_probs=41.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh-----CCcEE-------------EEecc-ccc--------ChhHHHHHHHhhc--
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL-----RFDIY-------------DLELT-SIY--------SNSDLRRILLSTT-- 296 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l-----~~~~~-------------~l~~~-~~~--------~~~~l~~l~~~~~-- 296 (474)
.+.++|.||+|+|||++++.|+... |.++- .+... ++. .-..+..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 3578999999999999999998533 33220 00000 000 0134566677767
Q ss_pred CCcEEEEeccccc
Q 011935 297 NRSILVIEDVDCS 309 (474)
Q Consensus 297 ~~sIl~iDeiD~l 309 (474)
+|.+|++||.-.-
T Consensus 105 ~p~llllDEp~~g 117 (199)
T cd03283 105 EPVLFLLDEIFKG 117 (199)
T ss_pred CCeEEEEecccCC
Confidence 8999999997543
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.44 E-value=0.00042 Score=73.33 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=46.9
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc--------------------ChhHHHHHHHhh--c
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY--------------------SNSDLRRILLST--T 296 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~~--~ 296 (474)
|++...-++|+||||+|||+|+..+|... +..++.++..+-. .+..+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 46666678999999999999999998765 5566666543211 111222333222 3
Q ss_pred CCcEEEEeccccccc
Q 011935 297 NRSILVIEDVDCSVE 311 (474)
Q Consensus 297 ~~sIl~iDeiD~l~~ 311 (474)
++.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 678999999998754
No 306
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.43 E-value=0.00079 Score=69.23 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHhC
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~ 271 (474)
.+++||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78999999999999999998764
No 307
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.43 E-value=0.00066 Score=63.95 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=63.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCC
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
|......++|.|+.|+|||++++.|+.+. +.-+.....+.+. .......-|+.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~----~~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDF----LEQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHH----HHHHHHhHheeHHHHhhcch----------
Confidence 44445567899999999999999997662 2111222212222 22334457899999987631
Q ss_pred CCCchhhHHhhHHhhhc-Cc---c----cCCCCceEEEEecCCCCCC-CccccCCCccceEEEeCC
Q 011935 322 VGSNTKLTLSGILNFID-GL---W----SSCGDERIIVFTTNHKERI-DPALLRPGRMDVHINMSY 378 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~id-g~---~----~~~~~~~iiI~tTN~~~~L-d~aLlrpGRfd~~I~~~~ 378 (474)
.....+-.++..-. .+ + .......++|+|||..+-| |+.--| || ..|+++.
T Consensus 110 ---~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ---KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 11122333332221 11 1 1111234788999998755 555667 77 4556654
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.43 E-value=0.00059 Score=65.78 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
|++.+..++++||||||||+++..++... +..++.++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 67777889999999999999999996542 44444443
No 309
>PRK13948 shikimate kinase; Provisional
Probab=97.42 E-value=0.00013 Score=67.81 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=32.2
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
++++.++|.|++|+|||++++.+|+.++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35688999999999999999999999999999877
No 310
>PRK05973 replicative DNA helicase; Provisional
Probab=97.39 E-value=0.0012 Score=63.81 Aligned_cols=36 Identities=22% Similarity=-0.031 Sum_probs=27.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDL 277 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l 277 (474)
|.++..-+++.|+||+|||+++-.+|... |.+++.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 56666779999999999999998876544 5444433
No 311
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.00058 Score=68.92 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc---------------------ChhHHHHHH---Hh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY---------------------SNSDLRRIL---LS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~---~~ 294 (474)
|+|..+-+.+|||||||||+|+..++... +...+.++...-. +.+.+..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666668899999999999999876433 4555555542211 111122222 22
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 24578999999998875
No 312
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.38 E-value=0.00024 Score=77.91 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=43.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
..+|..|++++|+++.++.+...+.. +++++|+||||||||++++++|+.+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34578899999999998877654431 247999999999999999999998753
No 313
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00014 Score=64.34 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=35.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILL 293 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~ 293 (474)
..++|++|-||||||+++.++|..+++..+. ++++..+.++..-+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~--isd~vkEn~l~~gyD 52 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE--ISDLVKENNLYEGYD 52 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEe--hhhHHhhhcchhccc
Confidence 3589999999999999999999999988765 455544444444443
No 314
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.00014 Score=67.01 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+++.||||+|||++++.||..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 5899999999999999999999875544
No 315
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.0046 Score=71.09 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=92.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
+.+|..-..++-.+.+.+.+.+ ....+-++++||+|.|||+++...+...+ ++.-+++..-.+
T Consensus 7 ~~~p~~~~~~~~R~rl~~~l~~----------------~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~ 69 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLAKLSG----------------ANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDN 69 (903)
T ss_pred cCCCCCccccCcchHHHHHHhc----------------ccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccC
Confidence 4455555566665555554421 11235689999999999999999887776 665555432110
Q ss_pred h--------------------------------hH----HHHHHHh---hcCCcEEEEecccccccccccCCCCCCCCCc
Q 011935 285 N--------------------------------SD----LRRILLS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSN 325 (474)
Q Consensus 285 ~--------------------------------~~----l~~l~~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~ 325 (474)
+ .. +..++.. ...|.+|||||++.+-+ ..
T Consensus 70 ~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~------------~~ 137 (903)
T PRK04841 70 QPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITN------------PE 137 (903)
T ss_pred CHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCC------------hH
Confidence 0 00 1112222 24588999999997731 11
Q ss_pred hhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCc-cccCCCccceEEEeC----CCCHHHHHHHHHHhhcccCCCCC
Q 011935 326 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRPGRMDVHINMS----YCTVHGFKVLASNYLGIKGKSHS 400 (474)
Q Consensus 326 ~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~-aLlrpGRfd~~I~~~----~p~~~~~~~l~~~~l~~~~~~~~ 400 (474)
....+..|+..+ +.+..+|+|+...-.++- .+...| ..+++. ..+.++..+++...++.. .
T Consensus 138 ~~~~l~~l~~~~-------~~~~~lv~~sR~~~~~~~~~l~~~~---~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~ 203 (903)
T PRK04841 138 IHEAMRFFLRHQ-------PENLTLVVLSRNLPPLGIANLRVRD---QLLEIGSQQLAFDHQEAQQFFDQRLSSP----I 203 (903)
T ss_pred HHHHHHHHHHhC-------CCCeEEEEEeCCCCCCchHhHHhcC---cceecCHHhCCCCHHHHHHHHHhccCCC----C
Confidence 223344444432 233455556654222221 111111 233444 668888888887766532 2
Q ss_pred cHHHHHhhhcCCCCCHHHH
Q 011935 401 LFGEIEGLIQSTDVTPAEV 419 (474)
Q Consensus 401 l~~~i~~l~~~~~~tpa~i 419 (474)
..++++.+...++--|.-+
T Consensus 204 ~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 204 EAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CHHHHHHHHHHhCChHHHH
Confidence 3345555655555555544
No 316
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.35 E-value=0.00083 Score=65.71 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=53.9
Q ss_pred CCccceecCCCCCcHHHHHHHHHH------HhCCcEEEEecccccChhHHHHHHHhh-----------------cCCcEE
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMAN------YLRFDIYDLELTSIYSNSDLRRILLST-----------------TNRSIL 301 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~------~l~~~~~~l~~~~~~~~~~l~~l~~~~-----------------~~~sIl 301 (474)
....+||.||.|.|||.|++.|.. .+.-.++.++|..+..+..+..+|-.. ...++|
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 345799999999999999999874 456789999999998887777776432 346899
Q ss_pred EEecccccc
Q 011935 302 VIEDVDCSV 310 (474)
Q Consensus 302 ~iDeiD~l~ 310 (474)
|+|||..+.
T Consensus 287 fldeigelg 295 (531)
T COG4650 287 FLDEIGELG 295 (531)
T ss_pred ehHhhhhcC
Confidence 999998774
No 317
>PRK14532 adenylate kinase; Provisional
Probab=97.32 E-value=0.00016 Score=67.19 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=26.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.++|.||||+|||++++.||+.+|+..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 478999999999999999999998776543
No 318
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.32 E-value=0.00064 Score=64.92 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++...-+.|+||||+|||+++..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56666678999999999999999988653
No 319
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.32 E-value=0.0006 Score=63.59 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.++-++|.||||+|||+|++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998875
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.32 E-value=0.0011 Score=63.98 Aligned_cols=27 Identities=33% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHH
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~ 268 (474)
|++...-+++.||||||||+++..++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 466667799999999999999755544
No 321
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.31 E-value=0.00039 Score=70.13 Aligned_cols=58 Identities=28% Similarity=0.312 Sum_probs=42.9
Q ss_pred cChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..++.++.+.+.++..+... ....++..++|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAG-----RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhh-----hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555666666666544322 12455678999999999999999999999999999654
No 322
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.00018 Score=66.67 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=27.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-|+|.|+||+|||+++++|+..++++++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3789999999999999999999999877654
No 323
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00017 Score=64.28 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
++|+||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 5799999999999999999998876553
No 324
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.30 E-value=0.00019 Score=65.07 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=24.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
++|.||||+|||++++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986654
No 325
>PRK14531 adenylate kinase; Provisional
Probab=97.30 E-value=0.0002 Score=66.39 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+-++++||||+|||++++.+|..+|+..+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999876543
No 326
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.30 E-value=0.00052 Score=69.86 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=63.0
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCC
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
|+|.+..++|||||+||||+++-.+-+.++-.++..--+. -+--+......-|-+|||+-.-.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~------ShFWLqPL~d~Ki~llDDAT~~c----------- 320 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK------SHFWLQPLADAKIALLDDATYPC----------- 320 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT------SCGGGGGGCT-SSEEEEEE-HHH-----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC------CcccccchhcCcEEEEcCCcccH-----------
Confidence 7788888999999999999999999999988876531111 01112223345688899875321
Q ss_pred CCCchhhHHhhHHhhhcCcccCC---CC------ceEEEEecCCCCCCCcc---ccCCCccceEEEeCCC
Q 011935 322 VGSNTKLTLSGILNFIDGLWSSC---GD------ERIIVFTTNHKERIDPA---LLRPGRMDVHINMSYC 379 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~idg~~~~~---~~------~~iiI~tTN~~~~Ld~a---LlrpGRfd~~I~~~~p 379 (474)
-.-.-..|-|.+||-.-+- .. -.-++.|||.-=.-++. |.+ |+ ..++||.|
T Consensus 321 ----W~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~ 383 (432)
T PF00519_consen 321 ----WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNP 383 (432)
T ss_dssp ----HHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-
T ss_pred ----HHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCc
Confidence 1111133567788731100 00 01366788854333443 345 77 45677654
No 327
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.29 E-value=0.00089 Score=63.82 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=56.4
Q ss_pred ccceecCCCCCcHHHHHHHHHH-----HhCCcE---------EEEecccccC-----------h---hHHHHHHHhhcCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN-----YLRFDI---------YDLELTSIYS-----------N---SDLRRILLSTTNR 298 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~-----~l~~~~---------~~l~~~~~~~-----------~---~~l~~l~~~~~~~ 298 (474)
+.++|.||.|+|||++.+.++. ..|..+ ++-....+.. . ..+..++..+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6789999999999999999983 223221 1111111111 1 2233334445689
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCcc
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 363 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~a 363 (474)
++++|||+..-.+ .......+..++..+-. .......+|++|...+.+...
T Consensus 110 slvllDE~~~gtd-----------~~~~~~~~~ail~~l~~---~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 110 SLVLIDEFGKGTD-----------TEDGAGLLIATIEHLLK---RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cEEEeccccCCCC-----------HHHHHHHHHHHHHHHHh---cCCCCcEEEEEcChHHHHHhh
Confidence 9999999875432 11122333344444421 101234677888876554433
No 328
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.29 E-value=0.00077 Score=69.60 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc--------------------ChhHHHHHHHh--hc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY--------------------SNSDLRRILLS--TT 296 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~--~~ 296 (474)
|+++..-++|+||||+|||+++..+|..+ +..++.++..+-. .+..+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 46666678999999999999999998765 2355555432211 11122233222 24
Q ss_pred CCcEEEEeccccccc
Q 011935 297 NRSILVIEDVDCSVE 311 (474)
Q Consensus 297 ~~sIl~iDeiD~l~~ 311 (474)
++.+|+||.|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 688999999988753
No 329
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.28 E-value=0.0002 Score=63.17 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.9
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998776
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.26 E-value=0.0011 Score=65.92 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh----C-CcEEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL----R-FDIYDLELTS 281 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l----~-~~~~~l~~~~ 281 (474)
++.++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3468899999999999999999866 3 5565555544
No 331
>PRK13946 shikimate kinase; Provisional
Probab=97.26 E-value=0.0002 Score=66.50 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=31.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
++.++|.|+||||||++++.+|+.+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999998763
No 332
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0017 Score=66.47 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.6
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
-.++.||||||||+|++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 369999999999999999998773
No 333
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.24 E-value=0.00023 Score=66.10 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.8
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+++.||||+|||++++.||..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998776543
No 334
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0045 Score=59.57 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=94.3
Q ss_pred CccceecCCCC-CcHHHHHHHHHHHhC---------CcEEEEeccc-------ccChhHHHHHHHhhc------CCcEEE
Q 011935 246 KRGYLLYGPPG-TGKSSLIAAMANYLR---------FDIYDLELTS-------IYSNSDLRRILLSTT------NRSILV 302 (474)
Q Consensus 246 ~rgiLL~GppG-tGKT~la~alA~~l~---------~~~~~l~~~~-------~~~~~~l~~l~~~~~------~~sIl~ 302 (474)
...|||.|..+ +||..++.-++..+. -+++.+.... ...-+.+|++..... ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46799999998 999999988887652 2455554321 224566676655432 346999
Q ss_pred EecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHH
Q 011935 303 IEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVH 382 (474)
Q Consensus 303 iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~ 382 (474)
|+++|.+. ....+.||..++. ++.+.++|++|..++.+.|.+++ |+ ..+.|+.|...
T Consensus 95 I~~ae~mt----------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~ 151 (263)
T PRK06581 95 IYSAELMN----------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILH 151 (263)
T ss_pred EechHHhC----------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHH
Confidence 99999884 2456788888875 44668888999999999999998 88 58899999998
Q ss_pred HHHHHHHHhhccc
Q 011935 383 GFKVLASNYLGIK 395 (474)
Q Consensus 383 ~~~~l~~~~l~~~ 395 (474)
.-.+++..++...
T Consensus 152 ~~~e~~~~~~~p~ 164 (263)
T PRK06581 152 AYNELYSQFIQPI 164 (263)
T ss_pred HHHHHHHHhcccc
Confidence 8888777776543
No 335
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.23 E-value=0.00026 Score=65.11 Aligned_cols=34 Identities=38% Similarity=0.665 Sum_probs=30.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
+..++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4568999999999999999999999999887764
No 336
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.22 E-value=0.0011 Score=74.79 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=54.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHH-----hCC----------cEEEEecccccC--------------hhHHHHHHHhhcC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY-----LRF----------DIYDLELTSIYS--------------NSDLRRILLSTTN 297 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~-----l~~----------~~~~l~~~~~~~--------------~~~l~~l~~~~~~ 297 (474)
+.++|+||.+.|||++.+.++-. +|. ++++--+.++.. -..+..++..+..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCc
Confidence 56899999999999999988743 232 121111111111 1223344555568
Q ss_pred CcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC
Q 011935 298 RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 359 (474)
Q Consensus 298 ~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~ 359 (474)
++++++||+..-.+ +.........++..+.. .+..+|+||++++.
T Consensus 408 ~sLvLlDE~~~GtD-----------p~eg~ala~aile~l~~------~~~~vIitTH~~el 452 (782)
T PRK00409 408 NSLVLFDELGAGTD-----------PDEGAALAISILEYLRK------RGAKIIATTHYKEL 452 (782)
T ss_pred CcEEEecCCCCCCC-----------HHHHHHHHHHHHHHHHH------CCCEEEEECChHHH
Confidence 99999999864432 11122222345555432 12567788887543
No 337
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.19 E-value=0.00032 Score=64.08 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=29.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..++|.|+||+|||++++.+|..+++++++.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35789999999999999999999999998765
No 338
>PTZ00202 tuzin; Provisional
Probab=97.19 E-value=0.0094 Score=62.14 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT 280 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~ 280 (474)
|....+.+|.+.....+...+.. .....++-+.|.||+|||||++++.++..++...+.+|+.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 55567888998888888765542 1223345678999999999999999999999888888777
No 339
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.19 E-value=0.0041 Score=65.46 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
+.+.+.+.+...+.......... ..|..++|+||||+|||+++..+|..+ +..+..+++..
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 44555555554443221111111 346678999999999999999999877 45555555443
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.17 E-value=0.00075 Score=66.48 Aligned_cols=90 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc---EEEEec-ccc
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD---IYDLEL-TSI 282 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~---~~~l~~-~~~ 282 (474)
.+.+++++.......+.+.+.+..... ...++++.||+|+|||++++++..++... ++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 444788888777666666665554332 24689999999999999999999987433 443321 111
Q ss_pred c-------------ChhHHHHHHHhh--cCCcEEEEeccc
Q 011935 283 Y-------------SNSDLRRILLST--TNRSILVIEDVD 307 (474)
Q Consensus 283 ~-------------~~~~l~~l~~~~--~~~sIl~iDeiD 307 (474)
. ....+.+++..+ ..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 0 223455666554 368999999996
No 341
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0011 Score=63.91 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-+-|.||+|||||||.+.||...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999999865
No 342
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.17 E-value=0.0017 Score=62.18 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEe
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLE 278 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~ 278 (474)
|+|.+..+|+.||||||||+++..++... |..++.+.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 66777789999999999999998765322 55555444
No 343
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.0013 Score=61.98 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=39.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH-----hCCc--------------EEEEeccccc---------ChhHHHHHHHhhcCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY-----LRFD--------------IYDLELTSIY---------SNSDLRRILLSTTNR 298 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~-----l~~~--------------~~~l~~~~~~---------~~~~l~~l~~~~~~~ 298 (474)
.-++|.||.|+|||++.+.|+.- .|.. +..+...+.. .-..+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 45899999999999999999932 2211 1111111100 013344445556789
Q ss_pred cEEEEecccccc
Q 011935 299 SILVIEDVDCSV 310 (474)
Q Consensus 299 sIl~iDeiD~l~ 310 (474)
.++++||.-.-.
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999986543
No 344
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.15 E-value=0.0015 Score=67.36 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+++.||||+|||++++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4489999999999999999999764
No 345
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.15 E-value=0.0013 Score=74.10 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56899999999999999999865
No 346
>PRK06762 hypothetical protein; Provisional
Probab=97.14 E-value=0.00033 Score=63.66 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=27.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
|.-++|+|+||+|||++|+.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 345789999999999999999999965555554
No 347
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00036 Score=66.40 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.++|.||||+|||++++.||..++++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999876643
No 348
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00092 Score=60.19 Aligned_cols=27 Identities=41% Similarity=0.584 Sum_probs=23.3
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+..-+.|.||+|+|||+|+++|++.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998764
No 349
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.11 E-value=0.0028 Score=55.67 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
++.-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568899999999999999999998753
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.10 E-value=0.00034 Score=64.37 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=27.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+-++|.||||+|||+++++++..++..++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 46889999999999999999999887665443
No 351
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.09 E-value=0.003 Score=64.09 Aligned_cols=132 Identities=19% Similarity=0.308 Sum_probs=78.7
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh----------------------------hHHHHHHHh-
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN----------------------------SDLRRILLS- 294 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~----------------------------~~l~~l~~~- 294 (474)
..|..+.|||-.|||||.+++.+-+.++.+.+.+++-+..+- .....+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 346678999999999999999999999988888876654421 111222333
Q ss_pred --hc---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCc
Q 011935 295 --TT---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGR 369 (474)
Q Consensus 295 --~~---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGR 369 (474)
+. +...|++|.+|.+-+ .....++.|+..-.-+. . ..+.||+..-..+ +.-+.+-|-
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD-------------~~a~ll~~l~~L~el~~-~--~~i~iils~~~~e--~~y~~n~g~ 169 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD-------------MDAILLQCLFRLYELLN-E--PTIVIILSAPSCE--KQYLINTGT 169 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc-------------cchHHHHHHHHHHHHhC-C--CceEEEEeccccH--HHhhcccCC
Confidence 11 245889999998842 12344555544332221 1 1223333222111 112223344
Q ss_pred cc-eEEEeCCCCHHHHHHHHHHhhc
Q 011935 370 MD-VHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 370 fd-~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
++ ..++||.++.++.++|+.+-..
T Consensus 170 ~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 170 LEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CCceEEecCCCCHHHHHHHHhcCCc
Confidence 44 5789999999998888876544
No 352
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.09 E-value=0.0013 Score=66.89 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=22.8
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+|+|++|||.-|||||+|.-.....+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 358999999999999999998776433
No 353
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00042 Score=62.24 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=25.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+-+.||||||||++++-||..+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999875
No 354
>PRK08233 hypothetical protein; Provisional
Probab=97.08 E-value=0.0018 Score=59.30 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=24.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC-CcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR-FDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~-~~~~~l~ 278 (474)
-+.+.|+||+||||+++.|+..++ ..++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 466889999999999999999985 3444443
No 355
>PRK04296 thymidine kinase; Provisional
Probab=97.07 E-value=0.0031 Score=58.91 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL---RFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l---~~~~~~l 277 (474)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36899999999999998888765 4455544
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.06 E-value=0.00048 Score=63.56 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
-+++.||||+|||++++.+|..+|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999999876553
No 357
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00036 Score=63.37 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=26.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
++++|.||||||++++.++ ++|+..+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6899999999999999999 9999887654
No 358
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00056 Score=62.96 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=29.2
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..+.-+++.||||+|||++++.+++.++..++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999987776544
No 359
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.05 E-value=0.0078 Score=63.35 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=40.5
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEeccccc----------------------ChhHHHHHHHhhcCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIY----------------------SNSDLRRILLSTTNR 298 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~----------------------~~~~l~~l~~~~~~~ 298 (474)
++.++|.||+|+|||+++..||..+ +..+..+++.... +..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 3568899999999999999988754 2455555544321 123344444444556
Q ss_pred cEEEEeccc
Q 011935 299 SILVIEDVD 307 (474)
Q Consensus 299 sIl~iDeiD 307 (474)
-+|+||..-
T Consensus 301 DlVlIDt~G 309 (424)
T PRK05703 301 DVILIDTAG 309 (424)
T ss_pred CEEEEeCCC
Confidence 788888764
No 360
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.04 E-value=0.00047 Score=65.29 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.8
Q ss_pred ceecCCCCCcHHHHHHHHHHHh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l 270 (474)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777777665
No 361
>PRK02496 adk adenylate kinase; Provisional
Probab=97.04 E-value=0.00046 Score=63.87 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=26.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999876644
No 362
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.04 E-value=0.0034 Score=63.22 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
..+..+.|+||=|+|||++++.+-+++.-.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456788999999999999999998877544
No 363
>PRK14528 adenylate kinase; Provisional
Probab=97.02 E-value=0.00052 Score=63.92 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.+++.||||+|||++++.+|..++++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 478999999999999999999999876543
No 364
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.02 E-value=0.0019 Score=60.80 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.5
Q ss_pred ccceecCCCCCcHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMA 267 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA 267 (474)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999998
No 365
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.02 E-value=0.0016 Score=62.58 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccChhHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSNSDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 294 (474)
|++...-+.|+||||||||+++..+|... +..++.++..+-.....+.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~ 76 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER 76 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH
Confidence 45666668999999999999999997543 256677776654455566655543
No 366
>PRK09354 recA recombinase A; Provisional
Probab=97.01 E-value=0.0024 Score=65.08 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH---hCCcEEEEeccccc---------------------ChhHHHHHH---Hh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LRFDIYDLELTSIY---------------------SNSDLRRIL---LS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~---l~~~~~~l~~~~~~---------------------~~~~l~~l~---~~ 294 (474)
|++..+-+++|||||||||+|+..++.. .+...+.++...-. +.+....++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4566666889999999999999876543 24444444433211 111111121 22
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
.....+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24578999999998864
No 367
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.00 E-value=0.0017 Score=63.75 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
|++....++++||||||||+++..+|... |.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56667779999999999999999876542 5566666654
No 368
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.00 E-value=0.00055 Score=65.97 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=26.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
-++|.||||+|||++++.+|+.++++.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999877654
No 369
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.0026 Score=61.06 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=41.3
Q ss_pred CccceecCCCCCcHHHHHHHHHH-Hh----CCc---------EE-----EEecc-ccc--------ChhHHHHHHHhhcC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN-YL----RFD---------IY-----DLELT-SIY--------SNSDLRRILLSTTN 297 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~-~l----~~~---------~~-----~l~~~-~~~--------~~~~l~~l~~~~~~ 297 (474)
.+-++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-..+..++..+.+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 35689999999999999999987 22 211 11 11111 010 11445667777888
Q ss_pred CcEEEEecccc
Q 011935 298 RSILVIEDVDC 308 (474)
Q Consensus 298 ~sIl~iDeiD~ 308 (474)
+++++|||+.+
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999864
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.00 E-value=0.0013 Score=59.85 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+...+.|.||+|+|||+|.+.|+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999865
No 371
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.99 E-value=0.0012 Score=66.93 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=48.1
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-CcEEEEecccc
Q 011935 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-FDIYDLELTSI 282 (474)
Q Consensus 211 f~-~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-~~~~~l~~~~~ 282 (474)
|+ ++.|.++.++++.+.+.....+ +-.-++-++|.||+|+|||++++.+.+.+. +++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 7999999999998876644321 123456788999999999999999998773 46776644433
No 372
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.98 E-value=0.00097 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l 270 (474)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999996
No 373
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.011 Score=57.07 Aligned_cols=140 Identities=17% Similarity=0.224 Sum_probs=78.5
Q ss_pred Ccc-ceecCCCCCcHHHHHHHHHHHhCCc---EEEEecccccC--------------------------hhHHHHHHHhh
Q 011935 246 KRG-YLLYGPPGTGKSSLIAAMANYLRFD---IYDLELTSIYS--------------------------NSDLRRILLST 295 (474)
Q Consensus 246 ~rg-iLL~GppGtGKT~la~alA~~l~~~---~~~l~~~~~~~--------------------------~~~l~~l~~~~ 295 (474)
.+| +.++|+-|||||.+++|+...++-+ ++.++-..+.. ...|..++..-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 455 4589999999999999887777543 22233222211 01122223333
Q ss_pred cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC-CCc---cccCCCccc
Q 011935 296 TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER-IDP---ALLRPGRMD 371 (474)
Q Consensus 296 ~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~-Ld~---aLlrpGRfd 371 (474)
..|.++++||.+.+.. ..-..+.-|.|.-++... .-.+++|+-..--.+ --+ .+.. |++
T Consensus 130 ~r~v~l~vdEah~L~~-------------~~le~Lrll~nl~~~~~~--~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ 192 (269)
T COG3267 130 KRPVVLMVDEAHDLND-------------SALEALRLLTNLEEDSSK--LLSIVLIGQPKLRPRLRLPVLRELEQ--RID 192 (269)
T ss_pred CCCeEEeehhHhhhCh-------------hHHHHHHHHHhhcccccC--ceeeeecCCcccchhhchHHHHhhhh--eEE
Confidence 4568999999998843 111222223333222111 122444442211111 111 2334 898
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcccCCCCCcH
Q 011935 372 VHINMSYCTVHGFKVLASNYLGIKGKSHSLF 402 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~ 402 (474)
..|++++.+.++-...++..++..+...+++
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~ 223 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLF 223 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccC
Confidence 8899999999988888998888766555554
No 374
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.01 Score=61.38 Aligned_cols=49 Identities=27% Similarity=0.467 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 218 PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 218 ~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.++++.+.+.+...+..+..+ ...++-++|.||+|+|||+++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 345555555555444332111 1224678999999999999999999876
No 375
>PF13245 AAA_19: Part of AAA domain
Probab=96.96 E-value=0.001 Score=52.60 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=21.4
Q ss_pred cceecCCCCCcHH-HHHHHHHHHh------CCcEEEEecc
Q 011935 248 GYLLYGPPGTGKS-SLIAAMANYL------RFDIYDLELT 280 (474)
Q Consensus 248 giLL~GppGtGKT-~la~alA~~l------~~~~~~l~~~ 280 (474)
-+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3456999999999 5555666555 3445555433
No 376
>PLN02200 adenylate kinase family protein
Probab=96.96 E-value=0.00071 Score=65.44 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
+.-+++.||||+|||++++.+|..+|+.. ++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 34578999999999999999999998754 444443
No 377
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.96 E-value=0.0006 Score=64.66 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+++.||||+|||++++.||..+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6899999999999999999999887664
No 378
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.94 E-value=0.0088 Score=57.88 Aligned_cols=126 Identities=17% Similarity=0.303 Sum_probs=76.6
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC---cEEEEeccc---------------ccChhHHH-----------HHHHhh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF---DIYDLELTS---------------IYSNSDLR-----------RILLST 295 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~---~~~~l~~~~---------------~~~~~~l~-----------~l~~~~ 295 (474)
-+-.+++.||+|||||+++..+-..+.. +++.+.... +.....+. +.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999999988876643 222221100 00111111 111111
Q ss_pred -----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCcc
Q 011935 296 -----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRM 370 (474)
Q Consensus 296 -----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRf 370 (474)
..+.+|++||+-.- ...+..+..+++. | ..-++-+|+++...-.|||.++. -+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~--------------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~--n~ 149 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK--------------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRS--NI 149 (241)
T ss_pred cccCCCCCeEEEEeCCCCc--------------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhh--cc
Confidence 12579999997421 1112345566543 1 12346788888888899999877 78
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhc
Q 011935 371 DVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 371 d~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
+.++-++ -+...++.+++++..
T Consensus 150 ~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 150 DYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred eEEEEec-CcHHHHHHHHHhccc
Confidence 8888776 477778888888754
No 379
>PRK06696 uridine kinase; Validated
Probab=96.93 E-value=0.0025 Score=61.10 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=33.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNS 286 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~ 286 (474)
+.-|.+.|+||+|||++|+.|+..+ |..++.+.+.++....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 4457799999999999999999998 6677777777776443
No 380
>PRK13695 putative NTPase; Provisional
Probab=96.92 E-value=0.0063 Score=55.79 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=19.9
Q ss_pred ceecCCCCCcHHHHHHHHHHHh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l 270 (474)
++|.|+||+|||++++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988765
No 381
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00053 Score=63.47 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.7
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
.+++.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 378999999999999999999954 444544443
No 382
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.92 E-value=0.00072 Score=64.36 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=26.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999776653
No 383
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.91 E-value=0.0021 Score=63.47 Aligned_cols=25 Identities=32% Similarity=0.584 Sum_probs=23.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.++++.||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998874
No 384
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0024 Score=56.88 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCc---EE-----EEec-ccccChhHHHHHH-H--hhcCCcEEEEecccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFD---IY-----DLEL-TSIYSNSDLRRIL-L--STTNRSILVIEDVDCSV 310 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~---~~-----~l~~-~~~~~~~~l~~l~-~--~~~~~sIl~iDeiD~l~ 310 (474)
....+.+.||+|+|||+|++++++.+... ++ .+.. ..+ +....+++. . -..+|.++++||-..-+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 34568899999999999999999876321 10 0110 112 333333332 1 23589999999977554
No 385
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.0028 Score=58.93 Aligned_cols=62 Identities=15% Similarity=0.296 Sum_probs=38.7
Q ss_pred ceecCCCCCcHHHHHHHHHH-----HhCCcE---------E-----EEeccccc---------ChhHHHHHHHhhcCCcE
Q 011935 249 YLLYGPPGTGKSSLIAAMAN-----YLRFDI---------Y-----DLELTSIY---------SNSDLRRILLSTTNRSI 300 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~-----~l~~~~---------~-----~l~~~~~~---------~~~~l~~l~~~~~~~sI 300 (474)
++|+||.|.|||++.+.++- ..|..+ + .+...+.. .-..+..++..+.+|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 223211 1 11111111 01234455555668999
Q ss_pred EEEecccccc
Q 011935 301 LVIEDVDCSV 310 (474)
Q Consensus 301 l~iDeiD~l~ 310 (474)
+++||.-.-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999987543
No 386
>PF13479 AAA_24: AAA domain
Probab=96.89 E-value=0.0014 Score=62.33 Aligned_cols=60 Identities=32% Similarity=0.484 Sum_probs=37.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecc-------------cccChhHHHHHHHhh----cCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT-------------SIYSNSDLRRILLST----TNRSILVIEDVDCS 309 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~-------------~~~~~~~l~~l~~~~----~~~sIl~iDeiD~l 309 (474)
-.++||||||+|||+++..+-+-+ +++++.. .+.+-.++.+.+... ..--.||||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 358999999999999998872211 2222222 111345566655432 23469999988865
No 387
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.88 E-value=0.0023 Score=59.38 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=22.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
+-++|.||||+||+++++.|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 568999999999999999999986
No 388
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.88 E-value=0.002 Score=60.95 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999974
No 389
>PRK04040 adenylate kinase; Provisional
Probab=96.88 E-value=0.0008 Score=62.84 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=25.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh--CCcEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL--RFDIY 275 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l--~~~~~ 275 (474)
+.-++++|+||||||++++.+++.+ ++.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3467899999999999999999999 55543
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.88 E-value=0.0014 Score=70.74 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.2
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+++..+|+.||+|||||+|.||||+-.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445569999999999999999999854
No 391
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.87 E-value=0.026 Score=56.97 Aligned_cols=97 Identities=9% Similarity=0.097 Sum_probs=51.4
Q ss_pred CcEEEEecccccccccccCCCCCC-CCCchhhHHhhHHhhhcCcccCCCCceEE--EEecC---CCC--CCCccccC-CC
Q 011935 298 RSILVIEDVDCSVEMKDRQNDGAS-VGSNTKLTLSGILNFIDGLWSSCGDERII--VFTTN---HKE--RIDPALLR-PG 368 (474)
Q Consensus 298 ~sIl~iDeiD~l~~~~~~~~~~~~-~~~~~~~~l~~LL~~idg~~~~~~~~~ii--I~tTN---~~~--~Ld~aLlr-pG 368 (474)
|.++.||++.+++....-...... .....-.....|+..+.+-..-. ++.++ +.+|. .+. .++.+|.. ++
T Consensus 157 PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~-nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 157 PVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFK-NGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred ceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccC-CCeEEEEEeccccccccCCccchhhhccccC
Confidence 678889999999874322222111 11122233344555544322211 22333 44433 222 45556553 11
Q ss_pred c-----cc-------------eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 369 R-----MD-------------VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 369 R-----fd-------------~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
+ |. ..|+++..+.++.+.+++.|....
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 1 10 167899999999999999987643
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.86 E-value=0.00061 Score=58.43 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.8
Q ss_pred ceecCCCCCcHHHHHHHHHHHh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l 270 (474)
|+|.|+||||||++++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998
No 393
>PRK14527 adenylate kinase; Provisional
Probab=96.85 E-value=0.00074 Score=63.02 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=26.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.-++++||||+|||++++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3458999999999999999999999876543
No 394
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.85 E-value=0.003 Score=60.32 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=38.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHH-----hCCc---------EEEEecccccC-------h-------hHHHHHHHhhcCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY-----LRFD---------IYDLELTSIYS-------N-------SDLRRILLSTTNR 298 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~-----l~~~---------~~~l~~~~~~~-------~-------~~l~~l~~~~~~~ 298 (474)
+-++|.||.|+|||++.+.+|.. .+.. ++.--...+.. . ..+..++..+.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 45789999999999999999741 2211 11100111110 0 1345566666789
Q ss_pred cEEEEeccc
Q 011935 299 SILVIEDVD 307 (474)
Q Consensus 299 sIl~iDeiD 307 (474)
+++++||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 395
>PRK04182 cytidylate kinase; Provisional
Probab=96.84 E-value=0.00087 Score=61.30 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=26.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
++|.|+||+|||++++.+|..+++++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6899999999999999999999998875
No 396
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.84 E-value=0.0039 Score=66.14 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=44.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc--------------------ChhHHHHHHHh--hc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY--------------------SNSDLRRILLS--TT 296 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~l~~~--~~ 296 (474)
|+++..-+|++|+||+|||+|+..+|..+ +.+++.++..+-. .+..+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666678999999999999999987755 3455555432211 11122222222 23
Q ss_pred CCcEEEEecccccc
Q 011935 297 NRSILVIEDVDCSV 310 (474)
Q Consensus 297 ~~sIl~iDeiD~l~ 310 (474)
++.+|+||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 68899999998874
No 397
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.83 E-value=0.00071 Score=60.55 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.6
Q ss_pred ecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 251 LYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 251 L~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.||||+|||++++.||..+++..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999875443
No 398
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.82 E-value=0.0029 Score=63.47 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=40.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC-----CcEEEEecc-ccc-------------ChhHHHHHHHhh--cCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR-----FDIYDLELT-SIY-------------SNSDLRRILLST--TNRSILVIE 304 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~-----~~~~~l~~~-~~~-------------~~~~l~~l~~~~--~~~sIl~iD 304 (474)
+.++++.||+|+|||++++++++++. ..++.++-. ++. ....+..++..+ ..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 333333211 100 011444555443 368889999
Q ss_pred ccc
Q 011935 305 DVD 307 (474)
Q Consensus 305 eiD 307 (474)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 885
No 399
>PRK01184 hypothetical protein; Provisional
Probab=96.80 E-value=0.00097 Score=61.66 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
-++|+||||+|||++++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 46799999999999987 788999877654
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.0023 Score=60.17 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|+-++|.||+|+|||+.+.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999999999766
No 401
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.78 E-value=0.0023 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
++++++||+|+|||.++...+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888877655
No 402
>PLN02199 shikimate kinase
Probab=96.76 E-value=0.0018 Score=64.27 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=30.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++++|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 568999999999999999999999999999876
No 403
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.74 E-value=0.0053 Score=61.70 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=51.6
Q ss_pred Cccccc-ChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEE----EecccccCh
Q 011935 211 FDTLAM-DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYD----LELTSIYSN 285 (474)
Q Consensus 211 f~~l~g-~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~----l~~~~~~~~ 285 (474)
++++.+ ++++++-+.+.+-..+... .+...-++|+|+.|+|||+++..|..-+|-.... +.+.++.+.
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~ 119 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH 119 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC
Confidence 344443 4455655555544433321 3455678999999999999999999888754322 111221110
Q ss_pred hHHHHHHHhhcCCcEEEEecccc
Q 011935 286 SDLRRILLSTTNRSILVIEDVDC 308 (474)
Q Consensus 286 ~~l~~l~~~~~~~sIl~iDeiD~ 308 (474)
+-.+.....+.+++.+|++.
T Consensus 120 ---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 120 ---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred ---CchhhhhcCCEEEEecCCCC
Confidence 01122344677888999863
No 404
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.74 E-value=0.0012 Score=59.97 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=26.2
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+.++|+||+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67999999999999999999999987653
No 405
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.73 E-value=0.00099 Score=60.39 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=20.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
|.|+|+||||||+|+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 579999999999999999998 77765
No 406
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.71 E-value=0.0015 Score=67.42 Aligned_cols=45 Identities=27% Similarity=0.571 Sum_probs=37.7
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
++++-...+.+++.+.+- .+|+|+.||||.|||++|+|+|..+..
T Consensus 245 ~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 245 SLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred chhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 678888888888877552 369999999999999999999998744
No 407
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.71 E-value=0.0068 Score=59.72 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=51.9
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEe------c
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLE------L 279 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~------~ 279 (474)
.+++++...++..+.+.+.+. .....+++.||+|+|||++++++..++. ..++.++ +
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 467788777776665543322 1123478999999999999999987774 2344442 1
Q ss_pred cccc-----C--hhHHHHHHHhh--cCCcEEEEeccc
Q 011935 280 TSIY-----S--NSDLRRILLST--TNRSILVIEDVD 307 (474)
Q Consensus 280 ~~~~-----~--~~~l~~l~~~~--~~~sIl~iDeiD 307 (474)
..+. . .......+..+ .+|.+|+|+||.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1110 0 11233333333 368999999995
No 408
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.69 E-value=0.0013 Score=65.78 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-CCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-RFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-~~~~~~ 276 (474)
.-++|.||||||||++++.++..+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 457899999999999999999998 555444
No 409
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.69 E-value=0.0054 Score=56.46 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.+..+.|.||+|+|||+|+++|++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999865
No 410
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.68 E-value=0.0015 Score=61.57 Aligned_cols=149 Identities=18% Similarity=0.153 Sum_probs=63.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHH---HHHHHhhcCCcEEEEecccccccccccCCCCCCCCC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDL---RRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGS 324 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l---~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~ 324 (474)
-++++||+|||||.++-++|+.+|.+++..|--..+.+-.+ +..-.+...--=++|||-.-.-+ .-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G-----------~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDG-----------II 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG------------S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCC-----------Cc
Confidence 37899999999999999999999999999986555421110 00000111111266665332100 11
Q ss_pred chhhHHhhHHhhhcCcccCCCCceEEEEecCC-CCCC--CccccCCCccceEEEeCCCCHHHHH----HHHHHhhcccCC
Q 011935 325 NTKLTLSGILNFIDGLWSSCGDERIIVFTTNH-KERI--DPALLRPGRMDVHINMSYCTVHGFK----VLASNYLGIKGK 397 (474)
Q Consensus 325 ~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~-~~~L--d~aLlrpGRfd~~I~~~~p~~~~~~----~l~~~~l~~~~~ 397 (474)
........|+..++.+.. .+.+|+=+-+.. ...+ ++-..-+.+. ..+.++.|+.+.+. +-++.++.....
T Consensus 72 ~a~ea~~~Li~~v~~~~~--~~~~IlEGGSISLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~ 148 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSA--HGGLILEGGSISLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQMLRPDSS 148 (233)
T ss_dssp -HHHHHHHHHHHHHTTTT--SSEEEEEE--HHHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHHHHS--SS
T ss_pred CHHHHHHHHHHHHHhccc--cCceEEeCchHHHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHHhcCCCCC
Confidence 233455667777776544 222333222111 0000 1111122222 23456888888753 333444544444
Q ss_pred CCCcHHHHHhhhc
Q 011935 398 SHSLFGEIEGLIQ 410 (474)
Q Consensus 398 ~~~l~~~i~~l~~ 410 (474)
...+.+++.++-.
T Consensus 149 ~~Sll~EL~~lW~ 161 (233)
T PF01745_consen 149 GPSLLEELVALWN 161 (233)
T ss_dssp S--HHHHHHHHHT
T ss_pred CCcHHHHHHHHHh
Confidence 5567777776654
No 411
>PRK14526 adenylate kinase; Provisional
Probab=96.68 E-value=0.0014 Score=62.38 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.9
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
++|.||||+|||++++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876543
No 412
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.67 E-value=0.0059 Score=61.77 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcE
Q 011935 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSI 300 (474)
Q Consensus 221 k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sI 300 (474)
.+.|.+.++.... .+|.+|.+||-||-.||||++|+|+-+.+|-....+|+.. ++|.--+--+-..-.
T Consensus 138 ~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEE
Confidence 3445555554443 3467899999999999999999999999988777777653 234333333446678
Q ss_pred EEEecccccccccccCCCCCC-CCCchhhHHhhHHhhhcCcccC-----CCCce-----EEEEecCCCCCCCccccCCCc
Q 011935 301 LVIEDVDCSVEMKDRQNDGAS-VGSNTKLTLSGILNFIDGLWSS-----CGDER-----IIVFTTNHKERIDPALLRPGR 369 (474)
Q Consensus 301 l~iDeiD~l~~~~~~~~~~~~-~~~~~~~~l~~LL~~idg~~~~-----~~~~~-----iiI~tTN~~~~Ld~aLlrpGR 369 (474)
++|||+- +....... .++..-..|..|...+||...- .-+.+ --|.|.|. -.||..+.- |
T Consensus 206 VvFEDVK------Gq~~~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--R 276 (417)
T PF06431_consen 206 VVFEDVK------GQPSDNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--R 276 (417)
T ss_dssp EEEEEE--------SSTTTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--T
T ss_pred EEEEecC------CCcCCCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--e
Confidence 8999874 22211111 1233445677788888874210 00111 24667775 467888888 9
Q ss_pred cceEEEeCC
Q 011935 370 MDVHINMSY 378 (474)
Q Consensus 370 fd~~I~~~~ 378 (474)
|...+.|..
T Consensus 277 f~~~~~F~~ 285 (417)
T PF06431_consen 277 FCKVLDFRP 285 (417)
T ss_dssp EEEEEE---
T ss_pred eEeeEeccc
Confidence 999888864
No 413
>PRK04328 hypothetical protein; Provisional
Probab=96.67 E-value=0.011 Score=57.74 Aligned_cols=48 Identities=27% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH---hCCcEEEEecccccChhHHHHH
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LRFDIYDLELTSIYSNSDLRRI 291 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~---l~~~~~~l~~~~~~~~~~l~~l 291 (474)
|++.+..+|++||||||||.|+..++.+ -|.+.+.++... +...+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~ 69 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRN 69 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHH
Confidence 5777778999999999999999876543 256677776554 33344443
No 414
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0018 Score=58.05 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=25.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
++++|+||+|||++++.++..+ +...+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5799999999999999999988 55555554
No 415
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.67 E-value=0.0026 Score=62.85 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=33.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc----------ChhHHHHHHHh----h-cCCcEEEEeccccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY----------SNSDLRRILLS----T-TNRSILVIEDVDCS 309 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~----------~~~~l~~l~~~----~-~~~sIl~iDeiD~l 309 (474)
++|+|.||+|||++|+.|+..+ +..+..++-..+. .+..++..+.. . ....|+++|+..-+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6899999999999999999875 4566655533222 13334433322 2 35689999987644
No 416
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.66 E-value=0.012 Score=66.12 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=53.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---C--CcEEEEeccccc----------ChhHHHHHHHhh------------cCCc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---R--FDIYDLELTSIY----------SNSDLRRILLST------------TNRS 299 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~--~~~~~l~~~~~~----------~~~~l~~l~~~~------------~~~s 299 (474)
+-++|.|+||||||++++++...+ + ..++.+-.+... ....+++++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 467899999999999999987655 3 445544333221 123344444321 1346
Q ss_pred EEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 300 ILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 300 Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
+|+|||+..+. ...+..|+..+. .+..+++|+=.+.
T Consensus 419 llIvDEaSMvd----------------~~~~~~Ll~~~~-----~~~rlilvGD~~Q 454 (720)
T TIGR01448 419 LLIVDESSMMD----------------TWLALSLLAALP-----DHARLLLVGDTDQ 454 (720)
T ss_pred EEEEeccccCC----------------HHHHHHHHHhCC-----CCCEEEEECcccc
Confidence 99999997662 334566666542 2344666664443
No 417
>PHA00350 putative assembly protein
Probab=96.66 E-value=0.0048 Score=63.89 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=59.8
Q ss_pred ceecCCCCCcHHHHHHH--HHH--HhCCcEEEEecccccChhHHH---------------------------HHHHhhcC
Q 011935 249 YLLYGPPGTGKSSLIAA--MAN--YLRFDIYDLELTSIYSNSDLR---------------------------RILLSTTN 297 (474)
Q Consensus 249 iLL~GppGtGKT~la~a--lA~--~l~~~~~~l~~~~~~~~~~l~---------------------------~l~~~~~~ 297 (474)
++++|.||+|||.-+-. |-. .-|..++. ++..+. .+.+. ..+...+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 57899999999997765 322 23554442 443321 11111 11122346
Q ss_pred CcEEEEecccccccccccCCCCC----CCCCc---hhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCcc
Q 011935 298 RSILVIEDVDCSVEMKDRQNDGA----SVGSN---TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRM 370 (474)
Q Consensus 298 ~sIl~iDeiD~l~~~~~~~~~~~----~~~~~---~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRf 370 (474)
.++|||||+..+++.+....... ..... ....-..+++++... ...+.=||++|-++..||..++. ++
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H---RH~G~DIiliTQ~~~~Id~~iR~--lv 156 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH---RHYNWDIILLTPNIRKIHSDIRA--MI 156 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh---cccCceEEEEeCCHHHhhHHHHH--hh
Confidence 78999999999987442211100 00000 000011222222211 11224477888888899887765 55
Q ss_pred ce
Q 011935 371 DV 372 (474)
Q Consensus 371 d~ 372 (474)
+.
T Consensus 157 E~ 158 (399)
T PHA00350 157 EM 158 (399)
T ss_pred hh
Confidence 54
No 418
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.66 E-value=0.0051 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.-+++.||+|+|||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445899999999999999999998754
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.64 E-value=0.0056 Score=56.61 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCc--EEEEec-------ccc-cChhHHHHH-HH--hhcCCcEEEEecccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFD--IYDLEL-------TSI-YSNSDLRRI-LL--STTNRSILVIEDVDCSV 310 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~--~~~l~~-------~~~-~~~~~l~~l-~~--~~~~~sIl~iDeiD~l~ 310 (474)
...-+.|.||.|+|||+|++.|++.+..+ -+.++. ... .+...-+++ +. -..+|.++++||--.-+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 34457899999999999999999875321 111111 110 122222222 11 23579999999976544
No 420
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.64 E-value=0.0066 Score=62.34 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.63 E-value=0.0055 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=19.2
Q ss_pred ccceecCCCCCcHHH-HHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSS-LIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~-la~alA~~l~ 271 (474)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 588999999999999 5555555443
No 422
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.62 E-value=0.0058 Score=57.53 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=27.0
Q ss_pred hHHHHHHhC--CCCCccceecCCCCCcHHHHHHHHHH
Q 011935 234 RKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 234 ~~~~~~~~g--~~~~rgiLL~GppGtGKT~la~alA~ 268 (474)
+.+.-+++| +|.+.=+++.|+.|||||.|++.+|-
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHH
Confidence 455566665 45555588999999999999999874
No 423
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.62 E-value=0.0069 Score=59.75 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=54.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh----hHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN----SDL 288 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~----~~l 288 (474)
+++.-+++.+.|.. +.+-+. .+..+.||.|.+|+||+++++..|.-.++.++.+..+.-++- ++|
T Consensus 9 ~lVlf~~ai~hi~r-i~RvL~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIAR-ISRVLS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHH-HHHHHC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHHH-HHHHHc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 45555666666544 232332 234568999999999999999999999999999987765432 456
Q ss_pred HHHHHhhc---CCcEEEEeccc
Q 011935 289 RRILLSTT---NRSILVIEDVD 307 (474)
Q Consensus 289 ~~l~~~~~---~~sIl~iDeiD 307 (474)
+.++..+. ++.+++|+|-+
T Consensus 78 k~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHhccCCCeEEEecCcc
Confidence 66666553 57888888754
No 424
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0073 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
++..-+.|.||+|+|||+|.++|++.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344568899999999999999999875
No 425
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.60 E-value=0.0081 Score=55.03 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||+|+|||+|.++|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458899999999999999999865
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.59 E-value=0.0017 Score=63.23 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=25.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++|+|+||+|||++|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 5799999999999999999987 456665543
No 427
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.59 E-value=0.0016 Score=60.48 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=25.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
..++|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 357899999999999999999988765543
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.024 Score=52.34 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=40.9
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC--CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 011935 372 VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST--DVTPAEVAEELMKADDADVALEGLVNFLKRKRIQ 446 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~--~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 446 (474)
..|.+-+|+.++.++-+... ..+..+.|+.-+..+ ++...+--++.+-+++.+.|+..+...+...+..
T Consensus 116 v~IFi~pPs~eeL~~RL~~R------gtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~~l~~ii~aer~~ 186 (191)
T COG0194 116 VSIFILPPSLEELERRLKGR------GTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELKSIILAERLR 186 (191)
T ss_pred EEEEEcCCCHHHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHHHHHHHHHHHHHH
Confidence 46788889988766555433 333444554443321 1222222233456889999999999888776443
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.56 E-value=0.022 Score=57.72 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568899999999999999999876 344444443
No 430
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.54 E-value=0.006 Score=61.73 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccChhHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSNSDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 294 (474)
|++.+.-++++||||||||.++..+|-.. +..++.++...-.....+.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 46666678899999999999999988653 336777777665556667666543
No 431
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=58.80 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999886
No 432
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.53 E-value=0.0026 Score=66.40 Aligned_cols=168 Identities=19% Similarity=0.145 Sum_probs=87.9
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC--CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA--WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRR 290 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~--~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~ 290 (474)
.|.|.+++|+.+.-.+.- ..+.-..-|.. -.-+++|.|.||+.||.|.+.+.+-.....|.---.+- .-.|..
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS--GVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS--GVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC--ccccch
Confidence 456777777766543331 11100000111 11248999999999999999999877666654321110 111111
Q ss_pred HHHh---------------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 291 ILLS---------------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 291 l~~~---------------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
...+ ....+|-+|||+|++.. .+|..--. --.+.+++- .-.|+.-.-....-|++++|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-~DRtAIHE---VMEQQTISI---aKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-SDRTAIHE---VMEQQTISI---AKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh-hhhHHHHH---HHHhhhhhh---hhhccccchhhhHHhhhhcC
Confidence 1111 13578999999999854 11110000 000001110 00111111112234666777
Q ss_pred CCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHhhcc
Q 011935 356 HKE-------------RIDPALLRPGRMDVHINM-SYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 356 ~~~-------------~Ld~aLlrpGRfd~~I~~-~~p~~~~~~~l~~~~l~~ 394 (474)
... .||+||++ |||...-+ ..|+.+.=..|+++..-+
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhh
Confidence 421 47899999 99976555 778888878888876544
No 433
>PLN02674 adenylate kinase
Probab=96.53 E-value=0.0021 Score=62.36 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=26.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
+..++|.||||+||+++++.||..+++..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 356899999999999999999999986554
No 434
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.52 E-value=0.0068 Score=55.00 Aligned_cols=65 Identities=23% Similarity=0.433 Sum_probs=39.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---------------CCcEEEEe----cc--cccC-h---hHHHHHHHhhc--CCc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---------------RFDIYDLE----LT--SIYS-N---SDLRRILLSTT--NRS 299 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---------------~~~~~~l~----~~--~~~~-~---~~l~~l~~~~~--~~s 299 (474)
+..++.||.|+|||++.++++-.+ +..+-..+ .. .+.. . ..+...+.... +|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 467899999999999999986433 22222222 00 1111 1 22334444433 789
Q ss_pred EEEEeccccccc
Q 011935 300 ILVIEDVDCSVE 311 (474)
Q Consensus 300 Il~iDeiD~l~~ 311 (474)
++++||+..-.+
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 435
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.51 E-value=0.0073 Score=57.78 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=41.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHH-----hCC---------cEE-----EEeccc-cc--------ChhHHHHHHHhhcC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY-----LRF---------DIY-----DLELTS-IY--------SNSDLRRILLSTTN 297 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~-----l~~---------~~~-----~l~~~~-~~--------~~~~l~~l~~~~~~ 297 (474)
++.++|+||.|.|||++.+.++.- .|. +++ .+...+ +. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 456899999999999999988753 221 111 111111 11 11455677788889
Q ss_pred CcEEEEecccc
Q 011935 298 RSILVIEDVDC 308 (474)
Q Consensus 298 ~sIl~iDeiD~ 308 (474)
+++++|||+.+
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 436
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.51 E-value=0.016 Score=68.07 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=83.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHH---------------HHHHHh-hcCCcEEEEeccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDL---------------RRILLS-TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l---------------~~l~~~-~~~~sIl~iDeiD~l~~ 311 (474)
.+|+-||..+|||+++..+|.+.|..++.++-.....-.+. ...+.+ ..+.--|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLA-- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLA-- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccC--
Confidence 58999999999999999999999999999986554311111 112222 345567899998744
Q ss_pred ccccCCCCCCCCCchhhHHhhHHhhhcCcccC-------CCCceEEEEecCCCC------CCCccccCCCccceEEEeCC
Q 011935 312 MKDRQNDGASVGSNTKLTLSGILNFIDGLWSS-------CGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~-------~~~~~iiI~tTN~~~------~Ld~aLlrpGRfd~~I~~~~ 378 (474)
+...-..+++||.--..+.-. +..+..+++|-|.|. .|..|++. || ..++|..
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 233445566666433222211 123456667777663 35677877 88 5677877
Q ss_pred CCHHHHHHHHHHhh
Q 011935 379 CTVHGFKVLASNYL 392 (474)
Q Consensus 379 p~~~~~~~l~~~~l 392 (474)
-..++...|+....
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 77777777776543
No 437
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.01 Score=56.44 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+.|+.||||||||++.+-+|.-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 467899999999999999999765
No 438
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.04 Score=57.54 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=25.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELT 280 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~ 280 (474)
+.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 3458899999999999999999754 3444444433
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.49 E-value=0.0024 Score=60.16 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDI 274 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~ 274 (474)
+.-+++.|+||+|||++++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34678999999999999999999988654
No 440
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.48 E-value=0.0024 Score=68.14 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=40.9
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc--c------ChhHHHHHHHh-----hcCCcEEEEeccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI--Y------SNSDLRRILLS-----TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~--~------~~~~l~~l~~~-----~~~~sIl~iDeiD~l~~ 311 (474)
++||+|.||||||.+.+.+++-....++.--...- . .+.--++.-.+ ...++|-+|||+|++-+
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 49999999999999999999877665553321110 0 00001111111 23678999999999853
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.0078 Score=64.52 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++....+|+.||||||||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56667779999999999999999887654
No 442
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.42 E-value=0.0044 Score=69.01 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+++..-+.+.|++|||||||++.+.+..
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444459999999999999999999865
No 443
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.42 E-value=0.0034 Score=57.52 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.-+.|.|+||+|||++++.++..+ +..+..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3467899999999999999999987 333444443
No 444
>PRK14529 adenylate kinase; Provisional
Probab=96.42 E-value=0.0023 Score=61.40 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=25.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
++|.||||+|||++++.||..++++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999998765
No 445
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0022 Score=57.21 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=35.4
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHH
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRI 291 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l 291 (474)
+.+-.+++-|++|||||+++++++.+++++|++ ..++...++..++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHH
Confidence 345568899999999999999999999999875 4455555554443
No 446
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.0061 Score=61.38 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~ 281 (474)
|++...-++++||||+|||+++..+|-.. +-.++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45666668899999999999999888653 23566666555
No 447
>PLN02459 probable adenylate kinase
Probab=96.41 E-value=0.0031 Score=61.69 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=25.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
.++|.||||+|||++++.+|+.+++..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47889999999999999999999876553
No 448
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.41 E-value=0.0027 Score=58.64 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+.|+|+||+|||++++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 888776654
No 449
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.40 E-value=0.0084 Score=60.52 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=38.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH---------hCCcEEEEecccccChhHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LRFDIYDLELTSIYSNSDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~---------l~~~~~~l~~~~~~~~~~l~~l~~~ 294 (474)
|++...-+.++||||+|||.++..+|-. .+..++.++...-.+.+.+.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4666667889999999999999887732 2456777777665566777766544
No 450
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.40 E-value=0.0039 Score=60.28 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH---hCCcEEEEecc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LRFDIYDLELT 280 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~---l~~~~~~l~~~ 280 (474)
|++....+|++||||||||+++..++.+ -|.+.+.+.+.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6777888999999999999999876543 25556555543
No 451
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.38 E-value=0.007 Score=61.77 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=38.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccChhHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSNSDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 294 (474)
|++...-+.|+||||||||.|+..+|-.. +..++.++...-.....+.++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 45556667899999999999999887322 246777777665567777776544
No 452
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.38 E-value=0.0041 Score=60.97 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
|.+..+.+|++|+||||||+++..++... |.+++.+....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 56777889999999999999999887543 55566655443
No 453
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.37 E-value=0.0031 Score=68.44 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=29.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
-++|.|+||+|||++.+.+|+.++++++++|-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999873
No 454
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.35 E-value=0.011 Score=60.92 Aligned_cols=28 Identities=46% Similarity=0.717 Sum_probs=24.3
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
.+..+++.||.|||||+++++|.+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3567899999999999999999988844
No 455
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.35 E-value=0.097 Score=58.32 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=87.9
Q ss_pred CCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh--CCcEE
Q 011935 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL--RFDIY 275 (474)
Q Consensus 198 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l--~~~~~ 275 (474)
..|...++.+|......+-.+.+.+.+.. ..-.|-+||.-|.|.|||+++...+... +..+.
T Consensus 5 ~~~~~sk~~~P~~~~~~v~R~rL~~~L~~----------------~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~ 68 (894)
T COG2909 5 LMLIPSKLVRPVRPDNYVVRPRLLDRLRR----------------ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVA 68 (894)
T ss_pred CCCCccccCCCCCcccccccHHHHHHHhc----------------CCCceEEEEeCCCCCcHHHHHHHHHHhcCccccee
Confidence 34555566666655555555554444322 1124668999999999999999998533 44455
Q ss_pred EEecccccCh------------------------------------hHHHHHHHhh---cCCcEEEEecccccccccccC
Q 011935 276 DLELTSIYSN------------------------------------SDLRRILLST---TNRSILVIEDVDCSVEMKDRQ 316 (474)
Q Consensus 276 ~l~~~~~~~~------------------------------------~~l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~ 316 (474)
-+++.+-.++ .-+..+|.+. ..|..|||||.+.+-+
T Consensus 69 Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~----- 143 (894)
T COG2909 69 WLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISD----- 143 (894)
T ss_pred EeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCc-----
Confidence 4444433211 0112233322 3689999999997742
Q ss_pred CCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeC----CCCHHHHHHHHHHhh
Q 011935 317 NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMS----YCTVHGFKVLASNYL 392 (474)
Q Consensus 317 ~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~----~p~~~~~~~l~~~~l 392 (474)
......+..|++.. ++++.+|+||...-.+.-+=+| -=|..++++ ..+.++-.+++....
T Consensus 144 -------~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l~la~lR--lr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 144 -------PALHEALRFLLKHA-------PENLTLVVTSRSRPQLGLARLR--LRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred -------ccHHHHHHHHHHhC-------CCCeEEEEEeccCCCCccccee--ehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 33445556666553 3557777777643333222222 112233333 245566666666554
Q ss_pred c
Q 011935 393 G 393 (474)
Q Consensus 393 ~ 393 (474)
+
T Consensus 208 ~ 208 (894)
T COG2909 208 S 208 (894)
T ss_pred C
Confidence 3
No 456
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.34 E-value=0.0058 Score=67.07 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.1
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
++++.-+.+.||+|+|||+|++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999999876
No 457
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.013 Score=62.59 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEeccc--c--------------------cChhHHHHHHHhhcC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTS--I--------------------YSNSDLRRILLSTTN 297 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~--~--------------------~~~~~l~~l~~~~~~ 297 (474)
++..+.|.||+|+|||+++..||..+ +..+..++... . .....+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34568899999999999999998754 22343333221 1 022445555665566
Q ss_pred CcEEEEecccc
Q 011935 298 RSILVIEDVDC 308 (474)
Q Consensus 298 ~sIl~iDeiD~ 308 (474)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 77888887753
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.32 E-value=0.0053 Score=53.23 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
...-++|+|+=|+|||++++++|..+|.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456899999999999999999999864
No 459
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0057 Score=55.88 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=30.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI 282 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~ 282 (474)
+..+.|.|.+|+|||++|.+++..| |++.|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3467899999999999999999877 788888876554
No 460
>PRK12338 hypothetical protein; Provisional
Probab=96.30 E-value=0.003 Score=63.52 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=25.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDI 274 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~ 274 (474)
|.-+++.|+||||||++|+++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45788999999999999999999998754
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.28 E-value=0.0028 Score=58.24 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=22.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~ 272 (474)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4689999999999999999998764
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=96.28 E-value=0.2 Score=52.83 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEecccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTSI 282 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~~ 282 (474)
.|.-+++.||+|+|||+++..+|..+ |..+..+++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 35678999999999999888888765 556666666543
No 463
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.27 E-value=0.0035 Score=56.61 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=28.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI 282 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~ 282 (474)
.-++|.|.||+|||++|+++...| +.+++.++...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 347899999999999999999876 667777765544
No 464
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.27 E-value=0.011 Score=66.20 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=42.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHH---HhCCcEEEEeccccc---------------------ChhHHHHHHH---h
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN---YLRFDIYDLELTSIY---------------------SNSDLRRILL---S 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~---~l~~~~~~l~~~~~~---------------------~~~~l~~l~~---~ 294 (474)
|++..+-++++||||||||+|+..++. ..|..++.++...-. +.+....++. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 466667789999999999999965443 224444444332211 1122212221 1
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+|+||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23578999999998874
No 465
>PLN02165 adenylate isopentenyltransferase
Probab=96.26 E-value=0.0035 Score=63.40 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=30.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
+..++|.||+|+|||+|+..||..++..++..|--.++
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvY 80 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVY 80 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeE
Confidence 34588999999999999999999999877766544343
No 466
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.018 Score=52.68 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||+|+|||+|.+.||+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 467
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.22 E-value=0.013 Score=59.21 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=39.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEe-ccccc------------ChhHHHHHHHhh--cCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLE-LTSIY------------SNSDLRRILLST--TNRSILVIED 305 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~-~~~~~------------~~~~l~~l~~~~--~~~sIl~iDe 305 (474)
+.++++.||+|+|||+++++++.++ ...++.++ ..++. ..-.+..++..+ ..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4789999999999999999999874 12233221 11110 112344555443 3688999999
Q ss_pred cc
Q 011935 306 VD 307 (474)
Q Consensus 306 iD 307 (474)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 85
No 468
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.22 E-value=0.016 Score=56.03 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=53.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-----CC----cEE----------EEecc-ccc--------ChhHHHHHHHhhcCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-----RF----DIY----------DLELT-SIY--------SNSDLRRILLSTTNR 298 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-----~~----~~~----------~l~~~-~~~--------~~~~l~~l~~~~~~~ 298 (474)
+.++|+||...|||++.+.+|-.. |. .-. .+... ++. .-..+..++..+.++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 578999999999999999998532 31 111 11111 111 014566778778889
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 359 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~ 359 (474)
++|+|||+-+-.. +.........++..+... .+..+++||+..+-
T Consensus 124 sLvliDE~g~gT~-----------~~eg~ai~~aile~l~~~-----~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 124 SLVLIDELGRGTN-----------PEEGIAIAIAILEYLLEK-----SGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEEESTTTTSS-----------HHHHHHHHHHHHHHHHHT-----TT-EEEEEES-GGG
T ss_pred eeeecccccCCCC-----------hhHHHHHHHHHHHHHHHh-----ccccEEEEeccchh
Confidence 9999999964321 112223333455554321 12457778887643
No 469
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.20 E-value=0.004 Score=58.51 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=27.2
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.++|++|+|||++++.+++.+|+++++.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3679999999999999999998898887554
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.20 E-value=0.0069 Score=55.93 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.-+.+.||+|+|||++++++++.++.. .++...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~ 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLH 38 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccC
Confidence 347899999999999999999998874 33444443
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.20 E-value=0.0038 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.4
Q ss_pred cCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 252 YGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 252 ~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.||||||||++++++++.++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998765544
No 472
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.19 E-value=0.0049 Score=57.01 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=27.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhC---CcEEEEeccccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIY 283 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~ 283 (474)
+.+.|+||+|||++++.|+..++ .++..+++.++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 56899999999999999999874 455556555554
No 473
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.02 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=21.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-.+.+.||.|+|||+|.|.||.-+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3457799999999999999999865
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.19 E-value=0.0056 Score=57.84 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=27.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC-CcEEEEecccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR-FDIYDLELTSI 282 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~-~~~~~l~~~~~ 282 (474)
+.-+.|.||||+|||+|+++|++.++ ..+..++....
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 34578999999999999999999984 34444444443
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.18 E-value=0.018 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.2
Q ss_pred CCccceecCCCCCcHHHHHHHHHH
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~ 268 (474)
.+.-+.|.||.|+|||+|.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 344578999999999999999964
No 476
>PRK10646 ADP-binding protein; Provisional
Probab=96.18 E-value=0.037 Score=49.82 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.-++|.|+=|+|||++++++++.+|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345889999999999999999999975
No 477
>PRK13808 adenylate kinase; Provisional
Probab=96.17 E-value=0.0039 Score=63.14 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=25.6
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++|+||||+|||++++.||..+++..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998765543
No 478
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.17 E-value=0.0039 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=30.2
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh-CCcEEEEeccccc
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL-RFDIYDLELTSIY 283 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l-~~~~~~l~~~~~~ 283 (474)
..|.-+++.|+||+|||+++..+...+ +-+++.++...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 346778999999999999999999988 7777778776654
No 479
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.15 E-value=0.011 Score=62.25 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
.|.-++++|+||+|||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46778999999999999999999999985
No 480
>PTZ00035 Rad51 protein; Provisional
Probab=96.14 E-value=0.014 Score=59.56 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccChhHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSNSDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~~~ 294 (474)
|++...-+.++||||||||+++..+|... +..++.++.........+.++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~ 175 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAER 175 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHH
Confidence 45666668899999999999999887533 234556666554556667666544
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.14 E-value=0.011 Score=60.51 Aligned_cols=26 Identities=38% Similarity=0.744 Sum_probs=22.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
...+++.||+|+|||++++++.+++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34578999999999999999998774
No 482
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.12 E-value=0.0093 Score=59.51 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=26.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
.|--+++.||+|||||++|..+|..++.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999887
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.11 E-value=0.0043 Score=58.26 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
++.-++|.||+|+|||+|++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456688999999999999999999876
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.10 E-value=0.0038 Score=58.02 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=23.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
...+++.||+|+|||++++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999998764
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.10 E-value=0.0069 Score=65.56 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.5
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+++.-+.+.||+|+|||||++.+++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445569999999999999999999765
No 486
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.09 E-value=0.076 Score=63.99 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=63.1
Q ss_pred CCCCcc-cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChh
Q 011935 208 PSTFDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNS 286 (474)
Q Consensus 208 ~~~f~~-l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~ 286 (474)
+.++++ .+-.+.+++.+.+.......+ +..+||-||.|+|||++++-+|...+..+..++.....+-.
T Consensus 412 ~~~~~~~~i~T~~vq~~la~~~~a~~~~-----------~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~q 480 (1856)
T KOG1808|consen 412 LTSEATHYIITPRVQKNLADLARAISSG-----------KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQ 480 (1856)
T ss_pred cccccceeeccHHHHHHHHHHHHHHhcC-----------CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHH
Confidence 444555 556666666665555444322 24799999999999999999999999999988766654322
Q ss_pred HHHH----------------HHHhhcCCcEEEEeccccc
Q 011935 287 DLRR----------------ILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 287 ~l~~----------------l~~~~~~~sIl~iDeiD~l 309 (474)
++.. +...+.+...+|+|++...
T Consensus 481 eyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 481 EYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred HHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 2221 2233456789999999855
No 487
>PRK13764 ATPase; Provisional
Probab=96.09 E-value=0.0056 Score=66.72 Aligned_cols=26 Identities=38% Similarity=0.765 Sum_probs=23.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.++|++||||+|||+++++++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999998875
No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.013 Score=58.02 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
.++-++|.||||+|||+++..+|..+ +..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34668889999999999999999876 4555555544
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.07 E-value=0.0068 Score=56.72 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred ceecCCCCCcHHHHHHHHHHHhC-CcEEEEecccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLR-FDIYDLELTSI 282 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~-~~~~~l~~~~~ 282 (474)
+.|.||+|+|||+++++|++.++ ..+..++..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 46899999999999999999873 33444444443
No 490
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.07 E-value=0.0069 Score=58.38 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~ 279 (474)
|+++..-++|.||||+|||+++..+|... +.+++.+++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67777789999999999999999887644 677766654
No 491
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.05 E-value=0.0071 Score=55.27 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=27.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI 282 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~ 282 (474)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5789999999999999999876 566777766544
No 492
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.05 E-value=0.0046 Score=59.11 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred ceecCCCCCcHHHHHHHHHHHh
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l 270 (474)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 493
>PRK06761 hypothetical protein; Provisional
Probab=96.04 E-value=0.0056 Score=60.69 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=27.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
+-+++.||||+|||++++.++..+....+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 357899999999999999999999766555543
No 494
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.04 E-value=0.033 Score=64.17 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=54.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH---hCCcEEEEeccccc----------ChhHHHHHHHh-------hcCCcEEEEeccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY---LRFDIYDLELTSIY----------SNSDLRRILLS-------TTNRSILVIEDVD 307 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~---l~~~~~~l~~~~~~----------~~~~l~~l~~~-------~~~~sIl~iDeiD 307 (474)
-++|.|+||||||++++++... .|+.++.+-++... ....+..++.. .....+|||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999999887654 36677766544332 12334444322 1234699999997
Q ss_pred ccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 308 CSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
.+. ...+..||..... .+..+|+|+=++..
T Consensus 444 Mv~----------------~~~m~~LL~~a~~----~garvVLVGD~~QL 473 (988)
T PRK13889 444 MVG----------------TRQLERVLSHAAD----AGAKVVLVGDPQQL 473 (988)
T ss_pred cCC----------------HHHHHHHHHhhhh----CCCEEEEECCHHHc
Confidence 552 3345666655432 23456777755543
No 495
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.02 E-value=0.012 Score=57.83 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=55.1
Q ss_pred ecCCCCCcHHHHHHHHHHHh---------CCcEEEEecccccChhHHHHHH-----------------------------
Q 011935 251 LYGPPGTGKSSLIAAMANYL---------RFDIYDLELTSIYSNSDLRRIL----------------------------- 292 (474)
Q Consensus 251 L~GppGtGKT~la~alA~~l---------~~~~~~l~~~~~~~~~~l~~l~----------------------------- 292 (474)
|+||||+|||.|+..+|-.. +..++.+|...-.+...+.++.
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 99999999999999887543 3347777765544333332222
Q ss_pred Hh------hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 293 LS------TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 293 ~~------~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
.. ..+-.+|+||-|-.++... ..+. +........+..++..+..+.... ++.||.|
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIaalfr~e-~~~~--~~~~~R~~~L~~~~~~L~~lA~~~--~iaVvvT 184 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIAALFRSE-FSGR--GDLAERQRMLARLARILKRLARKY--NIAVVVT 184 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSSHHHHHH-SGST--TTHHHHHHHHHHHHHHHHHHHHHT--T-EEEEE
T ss_pred HHHHhhccccceEEEEecchHHHHHHH-Hccc--hhhHHHHHHHHHHHHHHHHHHHhC--CceEEee
Confidence 11 1234799999999887421 1110 001223455666666666654432 2444443
No 496
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.01 E-value=0.0053 Score=57.27 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHh-CCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL-RFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l-~~~~~ 275 (474)
+.+.|+||+|||++|+.++..+ +..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 4678999999999999999998 34443
No 497
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.01 E-value=0.024 Score=62.13 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+++.-+.+.||+|+|||+|++.|++.+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445669999999999999999999876
No 498
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.01 E-value=0.0064 Score=61.51 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.++|+.||+|+|||+++++++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.00 E-value=0.0053 Score=46.48 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=20.2
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
..+|+||.|+|||++..|+.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987654
No 500
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.99 E-value=0.0061 Score=57.13 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=26.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.|+|++|+|||++++.++. +|+++++.|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 478999999999999999998 888777665
Done!